Citrus Sinensis ID: 048829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970------
Protein Sequence
REKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFNDDSTKED
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHcccccEEccccccEEEcHHHHHHHHHHHHccEEEEEEccccccccccccccEEEEEEcccccccccccccccccccEEEEEccccccccccccccHHHHHcccccEEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccccccccccEEEcccccccHHHHccccccccEEEEcccccccccHHHHHHccccccccccEEEEEcccccccccccHHHHHHHccccccccccccEEEEEcccccccccccccccccEEEEEEEccccccccccccccccccEEEEccccccEEEcccccccccccccccccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEccccccccccccccccEEEEccccccEEcccccccccccEEEEcccccccccccccccccccEEEEEccccccEEcHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccEEEEEcccccccHHHcccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHHcccccccccccccccEEEEccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEEccccccccccccHHcHHcccEEEEccccccccccHHHHHHHHHHHHcEEEEEEEcccccccccccHccccHEEEEEcccccHcccccHHHHHHHHHHHHHcccHHHHHccHHHHccccccEEEccccccHHcccccccccHcccEccEEEEcccccccHHHHHcHHHcccEEEEccccccccHHHHHHHHHHccccccEEEEEEccccccccccccccHHHHHHHcccccccEEEEEEccccccccccccccccHHcEEEEEcccccccccccccccccccEEEEcccccEEEccHHHcccccccccccccEEEEcccHHHHHcccccccccccccccccEEEEcccHHHHcccccccccccEEEEcccccccccccccccccEEEEEccccccccccccccHHcEEEEccccccccccccccccccccEEEEccccccEEcccHcccccccccccccccccEEEEccccccccccccccccccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccEEEEcccHcHHHccHHHHHccccccccccccccEEEEccccccccccccccccHHHHHcccccccccccEEEEccccccccccccccccccccEEEEcccccHccccccccccccccEEEEccccccccccccccccccccEEEEcccHHHHcccHHccccccccEEEEccccccccccccccccccEEEEcccHHHHHHHHHcHccccccccccEEEEccccccccccccccccHcccHcccccccccEEEEcccccHHHccccccccccccEEEEcccccHcccccccccccccEEEEcccHHHHHHHHcccccccccEEEccEEEEcccEEEcccccccc
Coil and Loop (DISEMBL)
REKTGEDLGLEIFKELhsrsffqqssndaSRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLsyipeyyvggkrfgdlyDIQHLRTFLpvmltdsspgylapsilpkLLKLQRLRVFSLrgyhiselpdsvgdlRYLRYLNlsgtnirtlpESVNKLYNLHSLLLEDCDRLKKLCADMGNliklhhlnnsntdsleetplgigkLTCLQTLCNfvvgkdsgsglSELKLLMHLRGaleisklenvkdvgnakeARLDGKKNLKELLLRWTrstdgsssreaetemgvldmlkphknleqfgicgyggtkfptwlgdslfsnlvtlefedcgmctalpsvgqlpslkhltvRGVSRvkrlgsefygddspipfpcletlrfedlQEWEVWIshgsgqgvegfpklrelhilecpklrgtfpehlPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWesatghlgsqnsvvcrdtsnqshdgLLQDICSlksleirgcpklqsLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLvklpqsslslsslkeieiykcsslvsfpevalpsklkkIEIRECdalkslpepwmcdtsssleilkiwdchsltyiaevqlplslkrldIQRCNKIRTLTVEegiqssssrrYTSSLLEnlaisscpsltcifsknelpatleslevgnlppsvkvldvygcpklESIAErldnntsletinisncenLKILSSGLHNLCqlqqigiggcgnlesfpegglpcaklrrleiydckrlealpkglhnltSLQQLTIiggelpsleedglptnlhsLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIrgcdddmvsfppepedrrlgttlplpasltslsiaffpnleslsSSIVdlqnltkltlydcpklkyfpekglpsslLQLRIyrcplieekcrkdggqYWDLLTHipyariagkwvfnddstked
Flexible Loop (DISEMBL)
REKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGyhiselpdsvgdlRYLRYLNLSgtnirtlpeSVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGAleisklenvkdvgnakearldgkknlkelllrwtrstdgsssreaETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALpsvgqlpslkhltVRGVSRVKRlgsefygddspipfPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATghlgsqnsvvCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDalkslpepwMCDTSSSLEILKIWDCHSLTYIAEVqlplslkrldIQRCNKIRTltveegiqssssrRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAerldnntslETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLkyfpekglpsslLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPyariagkwvfnddstked
Low Complexity Region (SEG)
REKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQsslslsslKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQssssrrytssLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHnlcqlqqigiggcgnlESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRlgttlplpasltslsIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFNDDSTKED
Disordered region (IsUnstruct)
***********IFKEL************ASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDV**************KELLLRW******************LDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDT***SHDGLLQDICSLKSLEIRGCPKLQSLV********QQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGI*******YTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVS************TLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFN*******
Disordered Region (DISOPRED)
*EKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSE*****SFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTD*******ETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLT**************SSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMI****GFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWV*********
Disordered Region (DISEMBL)
REKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWT*************EMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLV*********QLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVE***********TSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFNDDSTKED
Disordered Region (DISPRO)
***TGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFNDDS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
REKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFNDDSTKED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	976	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.929	0.636	0.323	2e-96
Q9LRR4	1054	Putative disease resistan	no	no	0.552	0.511	0.360	2e-78
Q7XA42	979	Putative disease resistan	N/A	no	0.493	0.492	0.318	4e-53
Q7XA39	988	Putative disease resistan	N/A	no	0.503	0.496	0.310	7e-51
Q7XA40	992	Putative disease resistan	N/A	no	0.508	0.5	0.314	9e-51
Q7XBQ9	970	Disease resistance protei	N/A	no	0.475	0.478	0.339	1e-50
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.390	0.292	0.251	5e-09
P0CB16	1201	Putative disease resistan	no	no	0.572	0.465	0.224	1e-07
Q38834	852	Disease resistance RPP13-	no	no	0.255	0.292	0.268	1e-07
Q8W3K3	910	Putative disease resistan	no	no	0.278	0.298	0.303	3e-07

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  354 bits (909), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 329/1016 (32%), Positives = 488/1016 (48%), Gaps = 109/1016 (10%)

Query: 6    EDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSF 65
            ED+G +   +L ++SFFQ+     + FVMHDL+NDLA   +G+  F +E     +     
Sbjct: 459  EDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLED----DNIPEI 514

Query: 66   SRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSIL------PKLL 119
                RH S+          F  +   + LRT LP     +SP  L    L      P L 
Sbjct: 515  PSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPF----NSPTSLESLQLTEKVLNPLLN 570

Query: 120  KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCD 179
             L  LR+ SL  Y I+ LP S+  L+ LRYL+LS T I+ LPE V  L NL +LLL +C 
Sbjct: 571  ALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCR 630

Query: 180  RLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKL 239
             L  L   +  LI L  L+   T  L E P GI KL  LQ L NFV+G+ SG+GL ELK 
Sbjct: 631  DLTSLPKSIAELINLRLLDLVGT-PLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKE 689

Query: 240  LMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRS----TDGSSSREAETEM 295
            L HLRG L IS+L+NV     AK+A L  K  L  L+L+WT        GS +  A  + 
Sbjct: 690  LSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQK 749

Query: 296  GVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSL 355
             VL ML+PH +L+ F I  Y G  FP WLGDS F  + ++    C +C +LP VGQLPSL
Sbjct: 750  EVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSL 809

Query: 356  KHLTVRGVSRVKRLGSEFY---GDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFP 412
            K+L++   + ++++G +F+    +   +PF  L+ L+F  +  W+ WI      G+  FP
Sbjct: 810  KYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FP 867

Query: 413  KLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLV---------SVLSLPALCKFLIG 463
             L++L I  CP LR  FPE LP    + I  C    V         S+ ++P      I 
Sbjct: 868  CLQKLIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVSGGENSFRRSLTNIPE-SPASIP 926

Query: 464  GCKKVVWESATGHLGSQNSVVCR---DTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAE 520
               +    S TG+  S  S   +    +S+QS+D    D     +  +   PK +     
Sbjct: 927  SMSRRELSSPTGNPKSDASTSAQPGFASSSQSND----DNEVTSTSSLSSLPKDRQ---T 979

Query: 521  EEKDQ-QQQLCELSCRLE---YLRLRYCEGLVKLP--------QSSLSLSSLKEIEIYKC 568
            E+ DQ + QL  L  + E    +  RY   +  +P        ++SL      E  I   
Sbjct: 980  EDFDQYETQLGSLPQQFEEPAVISARYSGYISDIPSTLSPYMSRTSLVPDPKNEGSILPG 1039

Query: 569  SSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQL 628
            SS   + +  + S +     R  +A+K  P  +  D  + +E LK+ D   L     ++L
Sbjct: 1040 SSSYQYHQYGIKSSVPS--PRSSEAIK--PSQYD-DDETDMEYLKVTDISHL-----MEL 1089

Query: 629  PLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPAT 688
            P +L+ L I  C+ + +L   E +  S         L  L I +C SL   F  +  P T
Sbjct: 1090 PQNLQSLHIDSCDGLTSLP--ENLTESYPN------LHELLIIACHSLES-FPGSHPPTT 1140

Query: 689  LESLEVG-----NLPPSVKVLDVYGCPKLESIAERLDNNTS--------LETINISNCEN 735
            L++L +      N   S++    Y   +   I     N  +        L +++I +CE+
Sbjct: 1141 LKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFPLSLFPKLRSLSIRDCES 1200

Query: 736  LKILS--SGL-HNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLH 792
             K  S  +GL  +   L+ + I  C NLE+FP+GGLP  KL  + + +CK+L+ALP+ L 
Sbjct: 1201 FKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLF 1260

Query: 793  NLTSLQQLTIIG-GELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGR-GFHRFSSLRYL 850
             LTSL  L II   E+ ++   G P+NL +L I     +   +  R   G     +LR L
Sbjct: 1261 GLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCI----SLCDKLTPRIEWGLRDLENLRNL 1316

Query: 851  LIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLS-SSIVDLQNLTKLT 909
             I G ++D+ SFP E           LP S+ SL I+ F NL++L+     D + +  + 
Sbjct: 1317 EIDGGNEDIESFPEEGL---------LPKSVFSLRISRFENLKTLNRKGFHDTKAIETME 1367

Query: 910  LYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGK 965
            +  C KL+   ++ LP  L  LRI  C L+ E   +   +++ +L +IPY  I G+
Sbjct: 1368 ISGCDKLQISIDEDLP-PLSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEIDGE 1421

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  294 bits (753), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 309/585 (52%), Gaps = 46/585 (7%)

Query: 3    KTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQ 62
            K  E+LG E F EL SRS  Q++    +R++MHD IN+LA +A+GE  F+ ++      Q
Sbjct: 464  KNLEELGNEYFSELESRSLLQKTK---TRYIMHDFINELAQFASGE--FSSKFEDGCKLQ 518

Query: 63   QSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGY-LAPSILPKLL-K 120
               S   R+LSY+ + Y     F  L +++ LRTFLP+ LT+SS    L   +  KLL  
Sbjct: 519  --VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPT 576

Query: 121  LQRLRVFSLRGYHISELP-DSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCD 179
            L RLRV SL  Y I+ LP D   ++ + R+L+LS T +  LP+S+  +YNL +LLL  C 
Sbjct: 577  LTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCS 636

Query: 180  RLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKL 239
             LK+L  D+ NLI L +L+   T  L + P   G+L  LQTL  F V    GS +SEL  
Sbjct: 637  SLKELPTDISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGG 695

Query: 240  LMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW----TRSTDGSSSREAETEM 295
            L  L G L+I +L+ V DV +A EA L+ KK+L+E+   W    + S + ++    + E 
Sbjct: 696  LHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEA 755

Query: 296  GVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSL 355
             V + L+PH+++E+  I  Y G +FP WL D  FS +V +   +C  CT+LPS+GQLP L
Sbjct: 756  EVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCL 815

Query: 356  KHLTVRGVSRVKRLGSEFY------GDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVE 409
            K L + G+  ++ +G +FY       D    PF  LETLRF++L +W+ W+     +G +
Sbjct: 816  KELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-D 874

Query: 410  GFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEEL------------LVSVLSLPAL 457
             FP L++L IL CP+L GT P  LP L  L I  C  L             +  LS+ + 
Sbjct: 875  LFPSLKKLFILRCPELTGTLPTFLPSLISLHIYKCGLLDFQPDHHEYSYRNLQTLSIKSS 934

Query: 458  CKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSL 517
            C  L+              +    S+   + SN+     L+   +L++L I  C  LQ L
Sbjct: 935  CDTLVKFPLNHFANLDKLEVDQCTSLYSLELSNEH----LRGPNALRNLRINDCQNLQLL 990

Query: 518  VAEEEKDQQQQLCELSCRLEYLRL------RYCEGLVKLPQSSLS 556
                   Q  Q+   +CR  YLR       +Y      LP+S++S
Sbjct: 991  PKLNALPQNLQVTITNCR--YLRQPMEQQPQYHHPQFHLPRSNVS 1033

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  210 bits (535), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 193/606 (31%), Positives = 283/606 (46%), Gaps = 124/606 (20%)

Query: 6   EDLGLEIFKELHSRSFFQQSSNDASR--FVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQ 63
           ED+G E++ EL+ RSFFQ+   ++ +  F MHDLI+DLA             TS  +   
Sbjct: 442 EDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLA-------------TSLFSANT 488

Query: 64  SFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQR 123
           S S  +R ++   + Y+    F ++                      +PS+L K + L  
Sbjct: 489 S-SSNIREINANYDGYMMSIGFAEVV------------------SSYSPSLLQKFVSL-- 527

Query: 124 LRVFSLRGYHISELPDSVGDLRYLRYLNLSGT-NIRTLPESVNKLYNLHSLLLEDCDRLK 182
            RV +LR  ++++LP S+GDL +LRYL+LSG   IR LP+ + KL NL +L L  CD L 
Sbjct: 528 -RVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLS 586

Query: 183 KLCADMGNLIKLHHLNNSNTD--SLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLL 240
            L        KL  L N   D  SL  TP  IG LTCL++L  FV+GK  G  L ELK L
Sbjct: 587 CLPKQTS---KLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNL 643

Query: 241 MHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDM 300
            +L G++ I+KL+ VK   +AKEA L  K NL  L L W    DG    ++E    VL+ 
Sbjct: 644 -NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW--DLDGKHRYDSE----VLEA 696

Query: 301 LKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTV 360
           LKPH NL+   I G+GG + P W+  S+  N+V++    C  C+ LP  G+LP L+ L +
Sbjct: 697 LKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLEL 756

Query: 361 R-GVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHI 419
             G + V+      Y +D+  P                       G+    FP LR+L I
Sbjct: 757 HTGSADVE------YVEDNVHP-----------------------GR----FPSLRKLVI 783

Query: 420 LECPKLRGTFP----EHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATG 475
            +   L+G       +  PVLE +    C   ++  LS     K ++             
Sbjct: 784 WDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKTLKVIV------------- 830

Query: 476 HLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCR 535
                ++ V R  SN         + +L SL+I    +  SL  E  K            
Sbjct: 831 ----TDATVLRSISN---------LRALTSLDISDNVEATSLPEEMFKSL--------AN 869

Query: 536 LEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALP--SKLKKIEIRECDA 593
           L+YL++ +   L +LP S  SL++LK ++   C +L S PE  +   + L ++ +  C  
Sbjct: 870 LKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMM 929

Query: 594 LKSLPE 599
           LK LPE
Sbjct: 930 LKCLPE 935

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  203 bits (516), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 188/605 (31%), Positives = 279/605 (46%), Gaps = 114/605 (18%)

Query: 6   EDLGLEIFKELHSRSFFQQ--SSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQ 63
           ED+G E++ EL+ RSFFQ+  + +  + F +HDLI+DLA             TS  +   
Sbjct: 444 EDVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLA-------------TSLFSASA 490

Query: 64  SFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQR 123
           S                G  R  ++ D +H  +     +  S     +PS+L K + L  
Sbjct: 491 S---------------CGNIREINVKDYKHTVSIGFAAVVSS----YSPSLLKKFVSL-- 529

Query: 124 LRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK 183
            RV +L    + +LP S+GDL +LRYL+LS  N R+LPE + KL NL +L + +C  L  
Sbjct: 530 -RVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQTLDVHNCYSLNC 588

Query: 184 LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 243
           L      L  L HL       L  TP  IG LTCL+TL  F+VG   G  L ELK L +L
Sbjct: 589 LPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNL-NL 646

Query: 244 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKP 303
            G++ I+ LE VK+  +A EA L  K NL+ L + W    DG +  E++ E+ VL+ LKP
Sbjct: 647 CGSISITHLERVKNDTDA-EANLSAKANLQSLSMSW--DNDGPNRYESK-EVKVLEALKP 702

Query: 304 HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGV 363
           H NL+   I  +GG +FP+W+  S+   ++++  + C  C  LP  G+LP L++L ++  
Sbjct: 703 HPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLELQNG 762

Query: 364 SRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHG-----SGQGVEGFPKLRELH 418
           S       E   DD    F    +  F  L++  +W           +G E FP L E+ 
Sbjct: 763 SAEVEYVEE---DDVHSRFSTRRS--FPSLKKLRIWFFRSLKGLMKEEGEEKFPMLEEMA 817

Query: 419 ILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLG 478
           IL CP     FP                      +L ++ K  + G              
Sbjct: 818 ILYCPLF--VFP----------------------TLSSVKKLEVHG-------------- 839

Query: 479 SQNSVVCRDTSNQSHDGL--LQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRL 536
                      N +  GL  + ++ +L SL I    +  SL        ++    L+  L
Sbjct: 840 -----------NTNTRGLSSISNLSTLTSLRIGANYRATSL-------PEEMFTSLT-NL 880

Query: 537 EYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALP--SKLKKIEIRECDAL 594
           E+L     + L  LP S  SL++LK ++I  C SL SFPE  L   + L ++ ++ C  L
Sbjct: 881 EFLSFFDFKNLKDLPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKML 940

Query: 595 KSLPE 599
           K LPE
Sbjct: 941 KCLPE 945

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  202 bits (515), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 283/605 (46%), Gaps = 109/605 (18%)

Query: 6   EDLGLEIFKELHSRSFFQQSSNDASR--FVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQ 63
           ED+G E++ EL+ RSFFQ+    + +  F MHDLI+DLA              + +    
Sbjct: 442 EDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLA--------------TSMFSAS 487

Query: 64  SFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQR 123
           + SR +R ++   +  +       ++ + + +  + +  ++    Y +PS+  + + L  
Sbjct: 488 ASSRSIRQINVKDDEDM-------MFIVTNYKDMMSIGFSEVVSSY-SPSLFKRFVSL-- 537

Query: 124 LRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK 183
            RV +L      +LP SVGDL +LRYL+LSG  I +LP+ + KL NL +L L +C  L  
Sbjct: 538 -RVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSC 596

Query: 184 LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 243
           L      L  L +L   +   L   P  IG LTCL+TL  FVVG+  G  L EL+ L +L
Sbjct: 597 LPKQTSKLCSLRNLVLDHC-PLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NL 654

Query: 244 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKP 303
           RGA+ I+ LE VK+   AKEA L  K NL  L + W R      +R    E+ VL+ LKP
Sbjct: 655 RGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDR-----PNRYESEEVKVLEALKP 709

Query: 304 HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGV 363
           H NL+   I  + G   P W+  S+  N+V++    C  C+ LP  G+L           
Sbjct: 710 HPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGEL----------- 758

Query: 364 SRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGV---EGFPKLRELHIL 420
                              PCLE+L   +LQ+  V + +    G      FP LR+LHI 
Sbjct: 759 -------------------PCLESL---ELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIG 796

Query: 421 ECPKLRG----TFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGH 476
               L+G       E  PVLE + I  C   +   LS  ++ K  I G      E+  G 
Sbjct: 797 GFCNLKGLQRMKGAEQFPVLEEMKISDCPMFVFPTLS--SVKKLEIWG------EADAGG 848

Query: 477 LGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRL 536
           L S                 + ++ +L SL+I     + SL+ E  K+ +         L
Sbjct: 849 LSS-----------------ISNLSTLTSLKIFSNHTVTSLLEEMFKNLEN--------L 883

Query: 537 EYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALP--SKLKKIEIRECDAL 594
            YL + + E L +LP S  SL++LK ++I  C +L S PE  L   S L ++ +  C+ L
Sbjct: 884 IYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNML 943

Query: 595 KSLPE 599
           K LPE
Sbjct: 944 KCLPE 948

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  202 bits (514), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 186/548 (33%), Positives = 264/548 (48%), Gaps = 84/548 (15%)

Query: 6   EDLGLEIFKELHSRSFFQQ--SSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQ 63
           ED+G E++KEL+ RSFFQ+    +  + F MHDLI+DLA         T  +++  N   
Sbjct: 443 EDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLA---------TSLFSA--NTSS 491

Query: 64  SFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQR 123
           S  R +   SY     +G       Y                         LP L K   
Sbjct: 492 SNIREINKHSYTHMMSIGFAEVVFFY------------------------TLPPLEKFIS 527

Query: 124 LRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK 183
           LRV +L     ++LP S+GDL +LRYLNL G+ +R+LP+ + KL NL +L L+ C +L  
Sbjct: 528 LRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCC 587

Query: 184 LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 243
           L  +   L  L +L    + SL   P  IG LTCL+TL  FVVG+  G  L EL  L +L
Sbjct: 588 LPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNL-NL 646

Query: 244 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKP 303
            G+++IS LE VK+  +AKEA L  K NL  L + W  +  G    E+E E+ VL+ LKP
Sbjct: 647 YGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSW--NNFGPHIYESE-EVKVLEALKP 703

Query: 304 HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVR-G 362
           H NL    I G+ G   P W+  S+  N+V++   +   C+ LP  G LP L+ L +  G
Sbjct: 704 HSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWG 763

Query: 363 VSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGV------EGFPKLRE 416
            + V+ +  E    D    FP    +RF  L++ ++W   GS +G+      E FP L E
Sbjct: 764 SADVEYV--EEVDIDVHSGFPT--RIRFPSLRKLDIW-DFGSLKGLLKKEGEEQFPVLEE 818

Query: 417 LHILECP-------------------KLRGTFPE----HLPVLEMLVIEGC---EELLVS 450
           + I ECP                   K+  +FPE    +L  L+ L I  C   +EL  S
Sbjct: 819 MIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKELPTS 878

Query: 451 VLSLPALCKFLIGGCKKV--VWESATGHLGSQNSVVCRDTSNQS--HDGLLQDICSLKSL 506
           + SL AL    I  C  +  + E     L S   +     +      +G LQ + +L SL
Sbjct: 879 LASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEG-LQHLTTLTSL 937

Query: 507 EIRGCPKL 514
           +IRGCP+L
Sbjct: 938 KIRGCPQL 945

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 192/433 (44%), Gaps = 52/433 (12%)

Query: 539  LRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLP 598
            L ++Y + L KL + +L L SLKE+ +   ++L   P+++L   L+++++  C +L +LP
Sbjct: 595  LIMKYSK-LEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVTLP 653

Query: 599  EPWMCDTSSSLEILKIWDCHSL-TYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSS 657
                   ++ L  L + DC  L ++  ++ L  SL+ L++  C  +R       I+   S
Sbjct: 654  SS--IQNATKLIYLDMSDCKKLESFPTDLNLE-SLEYLNLTGCPNLRNFP---AIKMGCS 707

Query: 658  RRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGN-------LPPSVKVLDVYGCP 710
                      + +  C      F    LPA L+ L+           P  +  L+V G  
Sbjct: 708  DVDFPEGRNEIVVEDC------FWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGY- 760

Query: 711  KLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPC 770
            K E + E + +  SLE +++S  ENL  +   L    +L+ + +  C +L + P      
Sbjct: 761  KHEKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTIGNL 819

Query: 771  AKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG----GELPSLEEDGLPTNLHSLRIE- 825
             +L RLE+ +C  LE LP  + NL+SL+ L + G       P +  + +   L +  IE 
Sbjct: 820  HRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEE 878

Query: 826  -----GNMG-IWKSMIERGRGFH------RFSSLRYLLIRGCDDDMVSFPPEPEDRR--- 870
                 GN+  + +  +++  G          SSL  L + GC   + SFP   E  +   
Sbjct: 879  IPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGC-SSLRSFPLISESIKWLY 937

Query: 871  LGTT-------LPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKG 923
            L  T       L    +L +L +    +L +L ++I +LQ L    + +C  L+  P   
Sbjct: 938  LENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDV 997

Query: 924  LPSSLLQLRIYRC 936
              SSL+ L +  C
Sbjct: 998  NLSSLMILDLSGC 1010

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 160/714 (22%), Positives = 276/714 (38%), Gaps = 155/714 (21%)

Query: 118  LLKLQRLRVFSLR---------------GYHISE---------LPDS-VGDLRYLRYLNL 152
            L KL++LRV  +R               G H+ E         +PD    ++  L+ LNL
Sbjct: 464  LSKLKKLRVLVIRDCDLIDNIDKLSGLQGLHVLEVSGASSLVNIPDDFFKNMTQLQSLNL 523

Query: 153  SGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGI 212
            SG  I++ P ++ KL  L   +L  C  L+ L   +    KL  ++      LE      
Sbjct: 524  SGLAIKSSPSTIEKLSMLRCFILRHCSELQDLPNFIVETRKLEVIDIHGARKLE------ 577

Query: 213  GKLTCLQTLCNFVVGKDSGSGLSELKLLMHLR-GALEISKLE--NVKDVGNAKEARLDGK 269
               +    + ++   K      ++L+LL HL     +I +L   ++KD  N         
Sbjct: 578  ---SYFDRVKDWKDYKGKNKNFAQLQLLEHLDFSETKIIRLPIFHLKDSTND----FSTM 630

Query: 270  KNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGIC----------GYGGTK 319
              L  LLLR              T + +LD       +E   +C              T 
Sbjct: 631  PILTRLLLRNCTRLKRLPQLRPLTNLQILDACGATDLVEMLEVCLEEKKELRILDMSKTS 690

Query: 320  FPTWLGDSL--FSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDD 377
             P  L D++    NL  L   +C +   LPS+ +L  L+   V G  ++K +   F G+ 
Sbjct: 691  LPE-LADTIADVVNLNKLLLRNCSLIEELPSIEKLTHLEVFDVSGCIKLKNINGSF-GEM 748

Query: 378  SPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFP--EHLPV 435
            S +    L      +L +            +     L+EL I +C KL+ T P  E L  
Sbjct: 749  SYLHEVNLSETNLSELPD-----------KISELSNLKELIIRKCSKLK-TLPNLEKLTN 796

Query: 436  LEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDG 495
            LE+  + GC EL                       E +  +L   + V   +T+      
Sbjct: 797  LEIFDVSGCTEL--------------------ETIEGSFENLSCLHKVNLSETNLGELPN 836

Query: 496  LLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSL 555
             + ++ +LK L +R C KL++L   E+             L    +  C  L K+ +S  
Sbjct: 837  KISELSNLKELILRNCSKLKALPNLEK----------LTHLVIFDVSGCTNLDKIEESFE 886

Query: 556  SLSSLKEIEIYKCSSLVSFPEVALPSKL---KKI--------------EIRECDALKSLP 598
            S+S L E+ +   ++L +FPE+   S L   K+I              +I+EC   KS  
Sbjct: 887  SMSYLCEVNL-SGTNLKTFPELPKQSILCSSKRIVLADSSCIERDQWSQIKECLTSKSEG 945

Query: 599  EPWMCDTSSSLEILKIWDCHSLTY-IAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSS-- 655
              +      + E L     H   Y + + ++PL++  +DI+R   ++T  + +    S  
Sbjct: 946  SSFSNVGEKTREKLLY---HGNRYRVIDPEVPLNIDIVDIKRSTDLKTEYIAKAEYVSIA 1002

Query: 656  -SSRRYTSSLLENLAISS--------CPSLTCIFSKNEL-------PATLESLEVGNLP- 698
             +  +  SSL + L ++S        C ++  +F  +E          +L++L + NLP 
Sbjct: 1003 ENGSKSVSSLFDELQMASVKGCWVERCKNMDVLFESDEQLEKEKSSSPSLQTLWISNLPL 1062

Query: 699  -------------PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL 739
                          ++K L V  CP ++ +   + +N  LE + +  C+ L+ L
Sbjct: 1063 LTSLYSSKGGFIFKNLKKLSVDCCPSIKWLFPEIPDN--LEILRVKFCDKLERL 1114

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 49/298 (16%)

Query: 134 ISELPDSVGDLRYLRYLNLSGTN-IRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI 192
           +SE+ D +  L++L  L+LS T+ +   P S+  L+NL  L    C  LK+L   +    
Sbjct: 575 LSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFK 634

Query: 193 KLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGK-DSGSGLSELKLLMHLRG-ALEIS 250
           KL  L+ +N  SLE  P GIG L  L+ L  F   + ++G  LSE+K L +LR   L ++
Sbjct: 635 KLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLSEVKNLTNLRKLGLSLT 694

Query: 251 KLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQF 310
           + + +      +E  LD   NL +L+       D       +  +  +D L P   L + 
Sbjct: 695 RGDQI------EEEELDSLINLSKLMSISINCYDSY----GDDLITKIDALTPPHQLHEL 744

Query: 311 GICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLG 370
            +  Y G   P+WL                       S  +LP L+++++   + VK + 
Sbjct: 745 SLQFYPGKSSPSWL-----------------------SPHKLPMLRYMSICSGNLVK-MQ 780

Query: 371 SEFYGDDSP---IPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKL 425
             F+G+++    I    L +L   D+ +WEV          +  P LR +    CP+L
Sbjct: 781 EPFWGNENTHWRIEGLMLSSLSDLDM-DWEVL--------QQSMPYLRTVTANWCPEL 829

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 144/323 (44%), Gaps = 51/323 (15%)

Query: 118 LLKLQRLRVFSL--RGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLL 175
            ++L+ LRV  L    +    LP  +G L +LRYLNL    +  LP S   L NL  L+ 
Sbjct: 577 FIRLELLRVLDLYKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPSS---LGNLRLLIY 633

Query: 176 EDCDRLKKLCADMGNLIKLHHLNNSNT--DSLEETPLGIGKLTCLQTLCNFVVGKDSGSG 233
            D +   K       L+ +H L       ++ +E  LG+  L  L+TL NF       S 
Sbjct: 634 LDINVCTKSLFVPNCLMGMHELRYLRLPFNTSKEIKLGLCNLVNLETLENF---STENSS 690

Query: 234 LSELKLLMHLRGALEISKLENVKDVGNAKE---ARLDGKKNLKELLLRWTRSTDGSSSRE 290
           L +L+ ++ LR  L I   +++     +KE   A + G ++L+ L +   R+ DGSS  +
Sbjct: 691 LEDLRGMVSLR-TLTIGLFKHI-----SKETLFASILGMRHLENLSI---RTPDGSSKFK 741

Query: 291 AETEMG-VLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLF-SNLVTLEFEDCGMC-TALP 347
              E G VLD +    +L+Q  +  Y     P    +  F S+L ++  + C +    LP
Sbjct: 742 RIMEDGIVLDAI----HLKQLNLRLY----MPKLPDEQHFPSHLTSISLDGCCLVEDPLP 793

Query: 348 SVGQLPSLKHLTVRGVSRV---KRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWI-SHG 403
            + +L  LK   VR   R    KR+ S   G      FP L  L    L EWE WI   G
Sbjct: 794 ILEKLLELKE--VRLDFRAFCGKRMVSSDGG------FPQLHRLYIWGLAEWEEWIVEEG 845

Query: 404 SGQGVEGFPKLRELHILECPKLR 426
           S       P+L  L I  C KL+
Sbjct: 846 S------MPRLHTLTIWNCQKLK 862

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	976
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.951	0.652	0.431	0.0
400131587	1388	FB_MR5 [Malus x robusta]	0.903	0.635	0.424	1e-178
225449649	1418	PREDICTED: putative disease resistance p	0.929	0.639	0.408	1e-164
356554923	1399	PREDICTED: putative disease resistance R	0.937	0.654	0.398	1e-160
359487225	1373	PREDICTED: putative disease resistance R	0.906	0.644	0.385	1e-153
225450023	1396	PREDICTED: putative disease resistance p	0.901	0.630	0.386	1e-151
451798992	1440	disease resistance protein At3g14460-lik	0.911	0.618	0.379	1e-150
359495024	1390	PREDICTED: putative disease resistance p	0.915	0.643	0.389	1e-150
359487416	1472	PREDICTED: putative disease resistance p	0.903	0.599	0.379	1e-149
359495026	2204	PREDICTED: uncharacterized protein LOC10	0.896	0.397	0.388	1e-148

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1000 (43%), Positives = 581/1000 (58%), Gaps = 71/1000 (7%)

Query: 2    EKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNK 61
            +K  EDLG E F++L SRSFFQQSS++ SRFVMHDLI DLA W AG  YF +E   + N+
Sbjct: 459  DKPMEDLGGEYFRDLLSRSFFQQSSSNKSRFVMHDLITDLAQWVAGISYFRLETKLKGNE 518

Query: 62   QQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-K 120
            Q   S   RHLS++   Y G K+F  + + +HLRTFLP+M       YL+  I+ +LL K
Sbjct: 519  QSKVSSKARHLSFVGSRYDGAKKFEAISEFKHLRTFLPLMAPYVGYSYLSYHIINQLLPK 578

Query: 121  LQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDR 180
            LQ LRV SL GY I  LP ++GDL++LRYL+LS T +R+LP S++ LYNL +LLLE+C  
Sbjct: 579  LQNLRVLSLSGYRIVYLPQTIGDLKHLRYLDLSCTQLRSLPTSISTLYNLQTLLLENCTS 638

Query: 181  LKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGK-DSGSGLSELKL 239
            LK L  D G L  L HLN   ++ LE  PL IG L+ LQTL NFVVGK DS   + EL  
Sbjct: 639  LKFLPPDFGKLFNLRHLNIFGSNLLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGP 698

Query: 240  LMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLD 299
            L+HLRG L ISKLENV     A+++ L GK++L E+++ W  S++ + S++ ET++ VL+
Sbjct: 699  LVHLRGTLCISKLENVTKAQEARDSYLYGKQDLNEVVMEW--SSNLNESQDEETQLEVLN 756

Query: 300  MLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLT 359
            ML+P+  L++  +  YGGTKFPTW+GD  FSNLV L FE+C  C +LP VGQLP LK L 
Sbjct: 757  MLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLL 816

Query: 360  VRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHI 419
            ++G++ VK +G EFYG+    PF  LETL FED+  W  WI  G     E F  L +L I
Sbjct: 817  IKGMAGVKSVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPLGVN---EAFACLHKLSI 873

Query: 420  LECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGS 479
            + C  L    P+HLP L+ LVI GC  ++VSV +LP LC  +I GCK+V  ES+ G  GS
Sbjct: 874  IRCHNLVRKLPDHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESSVG-FGS 932

Query: 480  QNSVVCRDTS--NQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLE 537
              S+     S    +  GL+  +  ++ L+I    KL +L                    
Sbjct: 933  PYSMAFSKISEFGNATAGLMHGVSKVEYLKIVDSEKLTTLWE------------------ 974

Query: 538  YLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKS- 596
                       K+P+    L  L+E+ I  C +LVSFP    PS LK I+I+ C  LKS 
Sbjct: 975  -----------KIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKSCSGLKSL 1023

Query: 597  LPEPWMCDTSSS-LEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTL-------TV 648
            LPE  +    ++ LE L +  C S+  IA  QLP +LK+L+I  C  ++ +       + 
Sbjct: 1024 LPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSSS 1083

Query: 649  EEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESL------------EVGN 696
              G+        + + L+ L I SCPSLT + S  +LPATL  L              G 
Sbjct: 1084 SSGMHDEDINNRSKTHLQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGK 1143

Query: 697  LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGG 756
            LP +++ L++    KL+ IAERL  NTSLE I I NC  LK L   LHNL +L+Q  I  
Sbjct: 1144 LPAALQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFW 1203

Query: 757  CGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG--GELPSLEEDG 814
            C +  SFP  GLP + LR L I +CK L+ALP G+ NLTSLQ+L I      LPS +E G
Sbjct: 1204 CQSFSSFPAAGLP-SNLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQE-G 1261

Query: 815  LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTT 874
            LPTNL  L +  ++  +K M E   G  + +SL  L I G   D+ S+P E E+   G  
Sbjct: 1262 LPTNLIELNMH-DLKFYKPMFE--WGLQQPTSLIKLSIHGECLDVDSYPGEREN---GVM 1315

Query: 875  LPLPASLTSLSIAFFPNLESLS-SSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRI 933
            + LP SL+ L I++F NLE LS     +L +L +L +Y+C KL   P++GLP SL QL I
Sbjct: 1316 MLLPNSLSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEI 1375

Query: 934  YRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFNDDST 973
              CPL+ + C  + GQ W  + HIP   I  K++    +T
Sbjct: 1376 RNCPLLSQHCNNEKGQEWSKIAHIPCVLIDNKFIHETVTT 1415

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 430/1014 (42%), Positives = 570/1014 (56%), Gaps = 132/1014 (13%)

Query: 2    EKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNK 61
            +K  EDLG + F++L SRS FQ+S+   S++VMHDLI DLA WAAGEI F +E     + 
Sbjct: 459  KKQIEDLGADYFRDLVSRSLFQKSTKCISKYVMHDLIGDLARWAAGEICFRLEDKQNDDG 518

Query: 62   QQ--SFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL 119
            +Q   F +  RH SYI     G KRF    ++++LRTFLP+   DS   YL+  +   LL
Sbjct: 519  EQLRCFPKA-RHSSYIRGLSDGVKRFEVFSELKYLRTFLPLR-KDSFWNYLSRQVAFDLL 576

Query: 120  -KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDC 178
             KLQ LRV S   Y I+ELPDS+GDLRYLRYL+LS T+I +LP+S + LYNL +L+LE C
Sbjct: 577  PKLQYLRVLSFNCYKITELPDSIGDLRYLRYLDLSYTDITSLPKSTSTLYNLQTLILEGC 636

Query: 179  DRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSG---SGLS 235
             +LK L  DM NL+ L HLNNSN   LE+ P  +G+L  LQ+L  FVV    G   SG+ 
Sbjct: 637  SKLKALPIDMSNLVNLRHLNNSNVSLLEDMPPQLGRLVNLQSLTKFVVSGGGGGDRSGIR 696

Query: 236  ELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEM 295
            EL+ LMHLRG L IS+LENV DV +A+ A L+ K+ L  L+L W+ S+D       ETE 
Sbjct: 697  ELEFLMHLRGTLCISRLENVTDVEDAQRANLNCKERLDSLVLEWSHSSDTR-----ETES 751

Query: 296  GVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSL 355
             VLDML+PH  L++  I  Y G +F +W+G  LFSN+V +  E+C  C +LP +G+LP L
Sbjct: 752  AVLDMLQPHTKLKELTIKSYAGKEFSSWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHL 811

Query: 356  KHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLR 415
            K L +RG++ V+ +G+EFYG+ S +PFP LETL F D+Q W+VW+   +      FP L+
Sbjct: 812  KELYIRGMNAVESVGAEFYGECS-LPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLK 870

Query: 416  ELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESA-- 473
             L + +C KL G  PE+L  L  L I  CEELLVS+ +   L +  I GCK VV  +A  
Sbjct: 871  TLLVRKCSKLEGKLPENLDSLASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKV 930

Query: 474  ------------TGHLGS-QNSVVCRDTSNQSHD-----------------GLLQDICSL 503
                           L S Q   +CR+  N   D                  LLQ + SL
Sbjct: 931  EFELLESLYLSNISELTSLQTGELCRNGLNMVRDLKINGCEELTSSLKNEAILLQQLISL 990

Query: 504  KSLEIRGCPKLQSLVAEE---EKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSL 560
              LEI       SL+ EE   E D+  QL  L C+LE+L+L+ C+ L+KLP+    LSSL
Sbjct: 991  GRLEIED----NSLLVEELGKEADELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSL 1046

Query: 561  KEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSL 620
            +E+ I++CSSLVSFP+V LP  LK IEI EC                          HSL
Sbjct: 1047 QELRIHECSSLVSFPDVGLPPSLKDIEITEC--------------------------HSL 1080

Query: 621  TYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIF 680
             Y A+ Q+P +L+R+ I+ C  +R+L   E + S SS  +    LE L I  C SLT + 
Sbjct: 1081 IYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSHNC--LEYLNIERCQSLTLLS 1138

Query: 681  SKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER--LDNNTS--LETINISNCENL 736
              ++L   L            + LD+Y C +LE +A      NNT+  LE   I  C+NL
Sbjct: 1139 LSDQLVRAL------------RELDIYDCEQLEFLAPDGLFCNNTNYFLENFRIRRCQNL 1186

Query: 737  KILSSGLHNLCQLQQIGIGGCGNLESFPE--GGLPCAKLRRLEIYDCKRLEALPKGLHNL 794
            K                        S P   GG+  + LR + I DC RLEALP+ +HN 
Sbjct: 1187 K------------------------SLPRLSGGIRGSNLREIRITDCDRLEALPEDMHNF 1222

Query: 795  TSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854
             SL++L I   E  +      P NL SL I   +   KS+ E   G HR +SLRYL I G
Sbjct: 1223 NSLEKLIIDYREGLTC---SFPANLTSLMI-WKVKSCKSLWELEWGLHRLTSLRYLWIGG 1278

Query: 855  CDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVD-LQNLTKLTLYDC 913
             D DMVSFPP+    R+ T LP   SLT LSI  FPNL+ LSS     L +L  L L+DC
Sbjct: 1279 EDPDMVSFPPDM--VRMETLLP--KSLTELSIGGFPNLKKLSSKGFQFLTSLESLELWDC 1334

Query: 914  PKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWV 967
            PKL   P++GLP SL +L IY CP+++E+C+   G+YW  ++HIPY  I  K +
Sbjct: 1335 PKLASIPKEGLPLSLTELCIYGCPVLKERCQPGKGRYWHKISHIPYIDIDWKMI 1388

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 407/997 (40%), Positives = 561/997 (56%), Gaps = 90/997 (9%)

Query: 2    EKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNK 61
            +K  ED+G + F EL SRSFFQ SS + SRFVMHDLINDLA + + EI F +E + + N+
Sbjct: 467  KKQMEDMGSDYFCELLSRSFFQLSSCNGSRFVMHDLINDLAQYVSEEICFHLEDSLDSNQ 526

Query: 62   QQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFL--PVMLTDSSPGYLAPSILPKLL 119
            + +FS  +RH S+    Y   ++F D Y  ++LRTFL  P+ +      +L   +   LL
Sbjct: 527  KHTFSGSVRHSSFARCKYEVFRKFEDFYKAKNLRTFLALPIHMQYYDFFHLTDKVSHDLL 586

Query: 120  -KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDC 178
             KL+ LRV SL  Y I ELP+S+GDL++LRYLNLS T I+ LP+S++ L+NL +L+L  C
Sbjct: 587  PKLRYLRVLSLSHYEIRELPNSIGDLKHLRYLNLSCTIIQELPDSLSDLHNLQTLVLFRC 646

Query: 179  DRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELK 238
             RL +L     NLI L HL+ ++T  LE  P  +GKL  LQTL  F+VGK    G+ EL 
Sbjct: 647  RRLNRLPRGFKNLINLRHLDIAHTHQLEVMPPQMGKLKSLQTLSKFIVGKSKELGIKELG 706

Query: 239  LLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVL 298
             L+HLRG L I  L+NV D+ +A++A L  K +L+ELL+ W+ +    S  E   E+ VL
Sbjct: 707  DLLHLRGKLSILDLQNVVDIQDARDANLKDKHHLEELLMEWSSNMFDDSQNET-IELNVL 765

Query: 299  DMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHL 358
              L+P+ NL++  I  YGG  FP W+GD  FS +V LE   C  CT LPS+G+L SLK L
Sbjct: 766  HFLQPNTNLKKLTIQSYGGLTFPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSLKKL 825

Query: 359  TVRGVSRVKRLGSEFYGDDSPI--PFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRE 416
             V+G+  VK +G EFYG+ S    PFP LE LRFED+ EWE W S       E +P+LRE
Sbjct: 826  CVKGMQGVKSVGIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWCSS------ESYPRLRE 879

Query: 417  LHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGH 476
            L I  CPKL    P HLP L  L I  C +L+  + SLP L   ++  C + +  S  G 
Sbjct: 880  LEIHHCPKLIQKLPSHLPSLVKLDIIDCPKLVAPLPSLPFLRDLIVAECNEAMLRSG-GD 938

Query: 477  LGSQNSVVCRDTSNQS--HDGLLQDICSLKSLEIRGCPK----LQSLVAEEEKDQQQQLC 530
            L S  ++   + SN +  ++GL++ + +L+ LEI  C +    LQS V  E     + L 
Sbjct: 939  LTSLITLRLENISNLTFLNEGLVRFLGALEVLEICNCSELKFLLQSGVGFENLSCIRHLV 998

Query: 531  --------------ELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE 576
                           L C LEYL +  C  L KLP    SL+SL+E+ I KC  L S  E
Sbjct: 999  IVMCPKLVLLAEDQPLPCNLEYLEINKCASLEKLPIGLQSLTSLRELSIQKCPKLCSLAE 1058

Query: 577  VALPSKLKKIEIRECDALKSLPEPWMCDTSSS----LEILKIWDCHSLTYIAEVQLPLSL 632
            +  P  L  +E+ +C+ L+SLP+  M +  +     LE LKI  C SL      +LP  L
Sbjct: 1059 MDFPPMLISLELYDCEGLESLPDGMMINGENRNFCLLECLKIVHCPSLICFPRGELPSKL 1118

Query: 633  KRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESL 692
            K L+I  C K+++L   EG+       +    LE L I  CP L+  F +  LP+T++ L
Sbjct: 1119 KELEIIDCAKLQSLP--EGLILGDHTCH----LEFLRIHRCPLLSS-FPRGLLPSTMKRL 1171

Query: 693  EVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSG-LHNLCQLQQ 751
            E+ N            C +LESI+  L ++T+LE + I   + LKI  SG LH+L  L +
Sbjct: 1172 EIRN------------CKQLESIS-LLSHSTTLEYLRI---DRLKINFSGCLHSLKHLIE 1215

Query: 752  IGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSL 810
            + I  C  LESFPE G     L+ L I DCK L++LP  + + TSL+ L I     L S 
Sbjct: 1216 LHIYSCSGLESFPERGFSSPNLKMLHIDDCKNLKSLPLQMQSFTSLRDLRIYDCPNLVSF 1275

Query: 811  EEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG----CDDDMVSFPPEP 866
             E+GL  NL S  I     +   + +   G H  +SL+  +I      CD D        
Sbjct: 1276 AEEGLSLNLTSFWIRNCKNLKMPLYQ--WGLHGLTSLQTFVINNVAPFCDHD-------- 1325

Query: 867  EDRRLGTTLP-LPASLTSLSIAFFPNLESLSSSIVDLQNLTK---LTLYDCPKLKYF-PE 921
                   +LP LP +LT LSI+ F NLESLSS  + LQNLT    L +Y CPKL+ F P+
Sbjct: 1326 -------SLPLLPRTLTYLSISKFHNLESLSS--MGLQNLTSLEILEIYSCPKLQTFLPK 1376

Query: 922  KGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIP 958
            +GL ++L  LRI  CP+IE +CRK+ G+ W +++HIP
Sbjct: 1377 EGLSATLSNLRIKFCPIIEARCRKNKGEDWPMISHIP 1413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 395/991 (39%), Positives = 566/991 (57%), Gaps = 76/991 (7%)

Query: 2    EKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTME--YTSEV 59
            +K  ED+G E F+EL S S FQ+SS++ S +VMHDLINDLA W AGE  F ++  + S  
Sbjct: 461  QKQMEDVGHEYFQELLSASLFQKSSSNRSLYVMHDLINDLAQWVAGESCFKLDNNFQSHK 520

Query: 60   NKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPV---------MLTDSSPGYL 110
             K++  S+  R+ SY+   Y G + F    + + LRTFLP+          +T+  P  L
Sbjct: 521  QKKKKISKMTRYASYVGGEYDGIQMFQAFKEAKSLRTFLPLKHRRLEEWSYITNHVPFEL 580

Query: 111  APSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNL 170
             P       +L+ LR  SL GY IS+LP+SV +L  LRYLNLS T++R LPES+  L NL
Sbjct: 581  LP-------ELRCLRALSLSGYFISKLPNSVSNLNLLRYLNLSSTDLRQLPESICSLCNL 633

Query: 171  HSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDS 230
             +LLL DC  L++L ++M +LI L HL+ + + SL   P GIGKLT LQTL NFVVG   
Sbjct: 634  QTLLLRDCFNLEELPSNMSDLINLRHLDITRSHSLTRMPHGIGKLTHLQTLSNFVVG--- 690

Query: 231  GSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSRE 290
             SG+ EL  L ++RG L +S+LE+V D   A EA ++ K  +  L L+WT   +  S  E
Sbjct: 691  SSGIGELMKLSNIRGVLSVSRLEHVTDTREASEAMINKKVGIDVLKLKWTSCMNNQSHTE 750

Query: 291  AETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVG 350
               E  VL ML+PHKNL +  I  YGGT FP W+GD  + +LV L+ +DC  CT+LP++G
Sbjct: 751  RAKE--VLQMLQPHKNLAKLTIKCYGGTSFPKWIGDPSYKSLVFLKLKDCAHCTSLPALG 808

Query: 351  QLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEG 410
             L +LK L + G+  V  +  EF G+    PFP LE L F D+++WE W    + +  + 
Sbjct: 809  NLHALKELYIIGMKEVCCIDGEFCGNACLRPFPSLERLYFMDMEKWENWFLSDNNEQNDM 868

Query: 411  FPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVW 470
            F  L++L I++CPKL G  PE+LP L+ ++++ CE+LLV++ SLP L K  I GCK +V 
Sbjct: 869  FSSLQQLFIVKCPKLLGKLPENLPSLKHVIVKECEQLLVTISSLPVLYKLEIEGCKGLVL 928

Query: 471  ESATGHLGSQNSVVCRDTSNQSH--DGLLQDICSLKSLEIRGCPKLQSLVAE---EEKDQ 525
              A     S NS+        +   + L+Q   +++ L+I  C   ++++ +    E   
Sbjct: 929  NCA-NEFNSLNSMSVSRILEFTFLMERLVQAFKTVEELKIVSCALDETVLNDLWVNEVWL 987

Query: 526  QQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSS-LKEIEIYKCSSLVSFPEVALPSKLK 584
            ++    LS  L  + +R C  +  +P+  +  S  L+ + I  C S+V      LP  LK
Sbjct: 988  EKNPHGLSSILRLIEIRNCNIMKSIPKVLMVNSHFLERLYICHCDSIVFVTMDQLPHSLK 1047

Query: 585  KIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIR 644
             +EI  C  L+ L +   C TSSS+ +      H  T I+       L+ + I  C  + 
Sbjct: 1048 SLEISNCKNLRCLLDNGTC-TSSSIIMHDDNVQHGSTIISH------LEYVYIGWCPSLT 1100

Query: 645  TLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVL 704
             ++    +  S         +++L I +C  L+C+  K +LP ++E LE+          
Sbjct: 1101 CISRSGELPES---------VKHLFIWNCSELSCLSMKGQLPKSIERLEIQ--------- 1142

Query: 705  DVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP 764
                CPKLESIA RL  NTSLE+I I NCENLK L  GLH L  L++I I GC NL SFP
Sbjct: 1143 ---SCPKLESIANRLHRNTSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGCPNLVSFP 1199

Query: 765  EGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLE---EDGLPTNLHS 821
            E GLP + L  L I  C++L ALP  ++NL SL++L I  G  PS++   E   P NL S
Sbjct: 1200 EEGLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEI--GYCPSIQYFPEINFPDNLTS 1257

Query: 822  LRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASL 881
            L I  +    ++M     G ++ S LR L I G +  M   P E    +LGT   LP++L
Sbjct: 1258 LWINDHNAC-EAMF--NWGLYKLSFLRDLTIIGGNLFM---PLE----KLGTM--LPSTL 1305

Query: 882  TSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIE 940
            TSL++  FP+LE+LSS     L +L+KL++Y+CPKL   PEKGLPSSLL+L I  CP ++
Sbjct: 1306 TSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPSSLLELYIQDCPFLK 1365

Query: 941  EKCRKDGGQYWDLLTHIPYARIAGKWVFNDD 971
            E+CRKD G+ W  +  +PY  I GK++++ D
Sbjct: 1366 EQCRKDKGRDWLKIADVPYVEIDGKFIYDSD 1396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487225|ref|XP_002268551.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 378/980 (38%), Positives = 528/980 (53%), Gaps = 95/980 (9%)

Query: 6    EDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSF 65
            EDLG + F +L SRSFFQ SS ++SR+VMHDLINDLA   AGEIYF ++   E NKQ + 
Sbjct: 470  EDLGSKYFNDLFSRSFFQHSSRNSSRYVMHDLINDLAQSVAGEIYFHLDGAWENNKQSTI 529

Query: 66   SRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTF--LPVMLTDSSPGYLAPSILPKLLK-LQ 122
            S   RH S+  ++    ++F   + ++ LRT   LP+     S GY++  +L  LLK ++
Sbjct: 530  SEKTRHSSFNRQHSETQRKFEPFHKVKCLRTLVALPMDQPVFSSGYISSKVLDDLLKEVK 589

Query: 123  RLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLK 182
             LRV SL GY I  LPDS+G+L+YLRYLNLSG++IR LP+SV  LYNL +L+L DC  L 
Sbjct: 590  YLRVLSLSGYKIYGLPDSIGNLKYLRYLNLSGSSIRRLPDSVCHLYNLQALILSDCKDLT 649

Query: 183  KLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMH 242
             L   +GNLI L HL+  +T  L+E P   G LT LQTL  F+VG+ +  GL ELK L  
Sbjct: 650  TLPVGIGNLINLRHLHIFDTWKLQEMPSQTGNLTKLQTLSKFIVGEGNNLGLRELKNLFD 709

Query: 243  LRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLK 302
            LRG L I  L NV ++ + ++A L+ K  ++EL + W  S D  +SR    E  VL+ L+
Sbjct: 710  LRGQLSILGLHNVMNIRDGRDANLESKHGIEELTMEW--SDDFGASRNEMHERNVLEQLR 767

Query: 303  PHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRG 362
            PH+NL++  I  YGG+ FP W+ D  F  +  L  +DC  CT+LP++GQ+ SLK L ++G
Sbjct: 768  PHRNLKKLTIASYGGSGFPNWMKDPSFPIMTHLILKDCKRCTSLPALGQISSLKVLHIKG 827

Query: 363  VSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILEC 422
            +S V+ +  EFYG     PFP LE+L FE + EWE W    +    E FP LR L I +C
Sbjct: 828  MSEVRTINEEFYGGIVK-PFPSLESLTFEVMAEWEYWFCPDAVNEGELFPCLRLLTIRDC 886

Query: 423  PKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNS 482
             KL     + LP         C         LP+  K  I  C  + + S+      +  
Sbjct: 887  RKL-----QQLP--------NC---------LPSQVKLDISCCPNLGFASSRFASLGEQR 924

Query: 483  VVCRDTSNQSHDGL--------LQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSC 534
            + C     + HD          LQ +  L+ L+I GCP L+              CEL  
Sbjct: 925  LPCNLKMLRIHDDANLEKLPNGLQTLTCLEQLDITGCPSLRCFPN----------CELPT 974

Query: 535  RLEYLRLRYCEGLVKLPQSSL---SLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIREC 591
             L+ L ++ C+ L  LP+  +   S   L+E++I  C  L SFP+  LP  L+++E+ EC
Sbjct: 975  TLKSLCIKDCKNLEALPEGMMHHDSTCCLEELKIEGCPRLESFPDTGLPPLLRRLEVSEC 1034

Query: 592  DALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEG 651
              LKSLP  +   +S +LE L+I DC SL      +LP +LK + IQ C  + +L   EG
Sbjct: 1035 KGLKSLPHNY---SSCALESLEISDCPSLRCFPNGELPTTLKSIWIQDCENLESLP--EG 1089

Query: 652  IQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPK 711
            +    S    +  LE + I  CP L       ELP+TL+ LE            + GCP 
Sbjct: 1090 MMHHDS----TCCLEEVIIMGCPRLESFPDTGELPSTLKKLE------------ICGCPD 1133

Query: 712  LESIAERL-DNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPC 770
            LES++E +  NN++L+ + +    NLKIL   LH+L  LQ I    C  LE FP  GL  
Sbjct: 1134 LESMSENMCPNNSALDNLVLEGYPNLKILPECLHSLKSLQII---NCEGLECFPARGLST 1190

Query: 771  AKLRRLEIYDCKRLEALPKGLHNLTSLQQLTII---GGELPSLEEDGLPTNLHSLRIEGN 827
              L  L I  C+ L++LP  + +L SL+ LTI+   G E  S  EDG+P NL SL I   
Sbjct: 1191 PTLTSLRIEGCENLKSLPHQMRDLKSLRDLTILFCPGVE--SFPEDGMPPNLISLEISYC 1248

Query: 828  MGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIA 887
              + K +      FH  +SL  L I     DMVSF  E           LP SLTSL I 
Sbjct: 1249 ENLKKPI----SAFHTLTSLFSLTIENVFPDMVSFRDE--------ECLLPISLTSLRIT 1296

Query: 888  FFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDG 947
               +L  L  S+ +L +L  L +  CP L       +P++L +L I+ CP++EE+  K+ 
Sbjct: 1297 AMESLAYL--SLQNLISLQYLEVATCPNLGSL--GSMPATLEKLEIWCCPILEERYSKEK 1352

Query: 948  GQYWDLLTHIPYARIAGKWV 967
            G+YW  + HIP   + G+++
Sbjct: 1353 GEYWPKIAHIPCIAMRGQFI 1372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450023|ref|XP_002272823.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi|451798994|gb|AGF69195.1| disease resistance protein At3g14460-like protein 2 [Vitis labrusca]

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 387/1002 (38%), Positives = 538/1002 (53%), Gaps = 122/1002 (12%)

Query: 6    EDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSF 65
            EDLG   F+EL SRSFFQ SS++ S+FVMHDL+NDLA +  GEI F++E   E N+QQ+ 
Sbjct: 476  EDLGANYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEKNLEGNQQQTI 535

Query: 66   SRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTD-SSPGYLAPSILPKLL-KLQR 123
            S+  RH S+I + Y   K+F   Y +++LRTF+ + +       +L+  +L  L+ KL+R
Sbjct: 536  SKKARHSSFIRDRYDIFKKFEAFYGMENLRTFIALPIDPLWDYNWLSNKVLEGLMPKLRR 595

Query: 124  LRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK 183
            LRV  L GY ISE+P SVGDL++LRYLNLS T ++ LP+S+  L+NL +L+L +C +L +
Sbjct: 596  LRVLLLSGYRISEIPSSVGDLKHLRYLNLSRTKVKRLPDSLGNLHNLETLILSNCRKLIR 655

Query: 184  LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 243
            L   +GNL  L HL+ +NT+ LEE P  I KL  LQ L NF+VGKD+G  + EL+ +  L
Sbjct: 656  LPLSIGNLNNLRHLDVTNTN-LEEMPPRICKLKGLQVLSNFIVGKDNGLNVKELRNMPQL 714

Query: 244  RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKP 303
            +G L ISKLENV +V +A++A L+ K+ L+EL + W  S   + S  A  +  VLD L+P
Sbjct: 715  QGGLCISKLENVANVQDARDASLNKKQKLEELTIEW--SAGLNDSHNARNQKDVLDSLQP 772

Query: 304  HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGV 363
            H NL +  I  YGG +FP W+GD  FS +V +   +C  CT+LP +G LP LKH+ + G+
Sbjct: 773  HFNLNKLKIEYYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGL 832

Query: 364  SRVKRLGSEFYGDD--SPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILE 421
              VK +G EFYG+      PFP LE+L F  + +WE W S       E +P L  L I+ 
Sbjct: 833  KEVKIVGREFYGETCLPNKPFPSLESLSFSAMSQWEDWESPSLS---EPYPCLLHLEIIN 889

Query: 422  CPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWES-----ATGH 476
            CPKL    P +LP L    I  C +L+  +  LP+L K  +  C + V  S     +   
Sbjct: 890  CPKLIKKLPTNLPSLVHFSIGTCPQLVSPLERLPSLSKLRVQDCNEAVLRSGLELPSLTE 949

Query: 477  LGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSC-- 534
            LG    V       + H+G +Q +  L+ L+I  C KL  L  E   D  QQL   SC  
Sbjct: 950  LGIDRMV----GLTRLHEGCMQLLSGLQVLDIDRCDKLTCL-WENGFDGIQQLQTSSCPE 1004

Query: 535  --------------RLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALP 580
                          +L+ L++R+C  L KLP     L+ L E+EIY C  LVSFPE+  P
Sbjct: 1005 LVSLGEKEKHELPSKLQSLKIRWCNNLEKLPNGLYRLTCLGELEIYDCPKLVSFPELGFP 1064

Query: 581  SKLKKIEIRECDALKSLPEPWMC---DTSSS------LEILKIWDCHSLTYIAEVQLPLS 631
              L+++ I  C+ L+ LP+ WM    D S++      LE L I  C SL    E +LP +
Sbjct: 1065 PMLRRLVIHSCEGLRCLPD-WMMVMKDGSNNGSDVCLLEYLHIHTCPSLIGFPEGELPTT 1123

Query: 632  LKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES 691
            LK L I RC K+ +L        S++   TS  L  L I  CPSLT  F   + P+TL+ 
Sbjct: 1124 LKELKIWRCEKLESLPGGMMHHDSNTTTATSGGLHVLDIWKCPSLT-FFPTGKFPSTLKK 1182

Query: 692  LEVGNLPPSVKVLDVYGCPKLESIAERL--DNNTSLETINISNCENLKILSSGLHNLCQL 749
            LE            ++ C +LESI++     NN+SLE ++I +   LKI+   L+     
Sbjct: 1183 LE------------IWDCAQLESISKETFHSNNSSLEYLSIRSYPCLKIVPDCLY----- 1225

Query: 750  QQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPS 809
                                  KLR LEI +C+ +E LP  L NLT+L  L I   E   
Sbjct: 1226 ----------------------KLRELEINNCENVELLPHQLQNLTALTSLGIYRCE--- 1260

Query: 810  LEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDR 869
                          I+  +  W        G    +SL+ L I G    + SF       
Sbjct: 1261 -------------NIKMPLSRW--------GLATLTSLKELTIGGIFPRVASFSD----- 1294

Query: 870  RLGTTLP-LPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYF-PEKGLPS 926
              G   P LP +LT LSI  F NL+SLSS ++  L +L  L +  CPKL+ F P +GLP 
Sbjct: 1295 --GQRPPILPTTLTFLSIQDFQNLKSLSSLALQTLTSLEDLWIQRCPKLQSFCPREGLPD 1352

Query: 927  SLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVF 968
            +L +L I  CPL++++C K  GQ W  + HIPY  I  K VF
Sbjct: 1353 TLSRLYITDCPLLKQRCSKGKGQDWPNIAHIPYVEIDDKNVF 1394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798992|gb|AGF69194.1| disease resistance protein At3g14460-like protein 1 [Vitis labrusca]

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 380/1002 (37%), Positives = 536/1002 (53%), Gaps = 112/1002 (11%)

Query: 6    EDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSF 65
            E+LG + F+EL SRSFFQ SS++ S+FVMHDL+NDLA   AGE+ F++    E ++    
Sbjct: 477  ENLGDDCFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKSVAGEMCFSLAEKLESSQPHII 536

Query: 66   SRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDS-SPGYLAPSILPKLL-KLQR 123
            S+  RH S+I   +   K+F   Y +++LRTF+ + +  S S  +L+  +L  L+ KL R
Sbjct: 537  SKKARHSSFIRGPFDVFKKFEAFYRMEYLRTFIALPIDASWSYRWLSNKVLEGLMPKLWR 596

Query: 124  LRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK 183
            LRV SL GY ISE+P S+GDL++LRYLNLSGT ++ LP+S+  LYNL +L+L  C +L +
Sbjct: 597  LRVLSLSGYQISEIPSSIGDLKHLRYLNLSGTRVKWLPDSIGNLYNLETLILSYCSKLIR 656

Query: 184  LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 243
            L   + NL  L HL+ ++T+ LEE PL I KL  LQ L  F+VGKD+G  + EL+ + HL
Sbjct: 657  LPLSIENLNNLRHLDVTDTN-LEEMPLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHL 715

Query: 244  RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKP 303
            +G L IS LENV +V +A++A L+ K+ L+EL + W+   D   S  A  ++ VL  L+P
Sbjct: 716  QGELCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLD--DSHNARNQIDVLGSLQP 773

Query: 304  HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGV 363
            H NL +  I  YGG +FP W+GD  FS +V +   +C  CT+LP +G LP LKH+ + G+
Sbjct: 774  HFNLNKLKIENYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGL 833

Query: 364  SRVKRLGSEFYGDD--SPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILE 421
              VK +G EFYG+      PFP LE+L F D+ +WE W    S    E +P L  L I++
Sbjct: 834  KEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDW---ESPTLSEPYPCLLHLKIVD 890

Query: 422  CPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQN 481
            CPKL    P +LP L  L I GC + +  +  L +L K  +  C + V  S         
Sbjct: 891  CPKLIKKLPTNLPSLVHLSILGCPQWVPPLERLSSLSKLRVKDCNEAVLRSGLELPSLTE 950

Query: 482  SVVCRDTS-NQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSC------ 534
              + R     + H+G +Q +  L+ L+I GC +L  L  E   D  QQL   SC      
Sbjct: 951  LRIERIVGLTRLHEGCMQLLSGLQVLDICGCDELTCL-WENGFDGIQQLQTSSCPELVSL 1009

Query: 535  ----------RLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLK 584
                      +L+ L +  C  L KLP     L+ L E+EIY C  LVSFPE+  P  L+
Sbjct: 1010 GEKEKHEMPSKLQSLTISGCNNLEKLPNGLHRLTCLGELEIYGCPKLVSFPELGFPPMLR 1069

Query: 585  KIEIRECDALKSLPEPWMC---DTSSS------LEILKIWDCHSLTYIAEVQLPLSLKRL 635
            ++ I  C+ L+ LP+ WM    D S++      LE LKI  C SL    E +LP +LK+L
Sbjct: 1070 RLVIVGCEGLRCLPD-WMMVMKDGSNNGSDVCLLEYLKIDTCPSLIGFPEGELPTTLKQL 1128

Query: 636  DIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVG 695
             I  C K+ +L        S++   TS  L  L I  CPSLT  F   + P+TL+ LE  
Sbjct: 1129 RIWECEKLESLPGGMMHHDSNTTTATSGGLHVLDIWDCPSLT-FFPTGKFPSTLQKLE-- 1185

Query: 696  NLPPSVKVLDVYGCPKLESIAERL--DNNTSLETINISNCENLKILSSGLHNLCQLQQIG 753
                      ++ C +LESI+E +   NN+SLE ++IS+   LKI+   L+         
Sbjct: 1186 ----------IWDCAQLESISEEMFHSNNSSLEYLSISSYPCLKIVPDCLY--------- 1226

Query: 754  IGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED 813
                              KLR L+I  C+ +E  P  L NLT+L  LTI   E       
Sbjct: 1227 ------------------KLRELKINKCENVELQPYHLQNLTALTSLTISDCE------- 1261

Query: 814  GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGT 873
                      I+  +  W        G    +SL+ L I G       FPP         
Sbjct: 1262 ---------NIKTPLSRW--------GLATLTSLKKLTIGGI------FPPVASFSDGQR 1298

Query: 874  TLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYF-PEKGLPSSLLQL 931
               LP +LT LSI  F NL+SLSS ++  L +L +L +  CPKL+ F P +GLP +L +L
Sbjct: 1299 PPILPTTLTLLSINDFQNLKSLSSLALQTLTSLEELWIRCCPKLESFCPREGLPDTLSRL 1358

Query: 932  RIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFNDDST 973
             I  CPL++++C K  GQ W  + HIPY +   K V  +D T
Sbjct: 1359 YIKDCPLLKQRCSKRKGQDWPNIAHIPYVQTDDKNVLKEDGT 1400

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 375/963 (38%), Positives = 541/963 (56%), Gaps = 69/963 (7%)

Query: 2    EKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNK 61
            +K  EDLG + F EL SRSFFQQSSN   RF+MHDLI+DLA   AG +   +E   E N 
Sbjct: 469  KKRMEDLGSKYFSELLSRSFFQQSSNIMPRFMMHDLIHDLAQSIAGNVCLNLEDKLE-NN 527

Query: 62   QQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDS---SPGYLAPSILPKL 118
            +  F +  RHLS+I +     K+F  +   ++LRTFL + ++ S   S  ++   +   L
Sbjct: 528  ENIFQKA-RHLSFIRQANEIFKKFEVVDKGKYLRTFLALPISVSFMKSLSFITTKVTHDL 586

Query: 119  L-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLED 177
            L +++ LRV SL GY +S+LP S+ +L +LRYLNL  ++I+ LP SV  LYNL +L+L D
Sbjct: 587  LMEMKCLRVLSLSGYKMSDLPSSIDNLSHLRYLNLCRSSIKRLPNSVGHLYNLQTLILRD 646

Query: 178  CDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSEL 237
            C  L ++   MGNLI L HL+ + T  LEE P  +G LT LQTL  F+VGK +GS + EL
Sbjct: 647  CWSLTEMPVGMGNLINLRHLDIAGTSQLEEMPPRMGSLTNLQTLSKFIVGKGNGSSIQEL 706

Query: 238  KLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGV 297
            K L+ L+G L I  L NV++  +A +A L  K +++EL + W  S D   SR    EM V
Sbjct: 707  KHLLDLQGELSIQGLHNVRNTRDAMDACLKNKCHIEELTMGW--SGDFDDSRNELNEMLV 764

Query: 298  LDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKH 357
            L++L+P +NL++  +  YGG KFP+W+G+  FS + +L  ++CG CT+LP +G+L  LK 
Sbjct: 765  LELLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKA 824

Query: 358  LTVRGVSRVKRLGSEFYGDDSPI-PFPCLETLRFEDLQEWEVWISHGSGQGVEG-FPKLR 415
            L ++G+ +VK +G EF+G+ S   PFPCLE+LRFED+ EWE W      +  EG F  LR
Sbjct: 825  LRIQGMCKVKTIGDEFFGEVSLFQPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLR 884

Query: 416  ELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATG 475
            EL I ECPKL G+ P  LP L  L I  C +L  ++  L  +C   +  C +VV  +   
Sbjct: 885  ELRIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD 944

Query: 476  HLGSQNSVVCRDTSNQS--HDGLLQDICSLKSLEIRGCPKLQSLVAE----------EEK 523
             L S  ++  +  S  +   +G  Q + +L+ L IRGC ++ SL             E  
Sbjct: 945  -LSSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFGLECLRGLESI 1003

Query: 524  DQQQ-------QLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE 576
            D  Q       +   L C L++L++  C  L +LP     L+ L+E+ +  C  L SFPE
Sbjct: 1004 DIWQCHGLVSLEEQRLPCNLKHLKIENCANLQRLPNGLQRLTCLEELSLQSCPKLESFPE 1063

Query: 577  VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLD 636
            + LP  L+ + +++C+ LK LP  +    S  LE L+I  C  L    E +LP SLK+L 
Sbjct: 1064 MGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGELPASLKQLK 1120

Query: 637  IQRCNKIRTLTVEEGIQSSSSRRYTSS-LLENLAISSCPSLTCIFSKNELPATLESLEVG 695
            I+ C  ++TL   EG+   +S    +S  LE L I  C SL              SL  G
Sbjct: 1121 IKDCANLQTLP--EGMTHHNSMVSNNSCCLEVLEIRKCSSLP-------------SLPTG 1165

Query: 696  NLPPSVKVLDVYGCPKLESIAER-LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGI 754
             LP ++K L+++ C + + I+E+ L +NT+LE ++ISN  N+KIL   LH+L  L    I
Sbjct: 1166 ELPSTLKRLEIWDCRQFQPISEKMLHSNTALEHLSISNYPNMKILPGFLHSLTYLY---I 1222

Query: 755  GGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGE-LPSLEED 813
             GC  L SFPE GLP   LR L I +C+ L++LP  + NL SLQ+L I   + L S  E 
Sbjct: 1223 YGCQGLVSFPERGLPTPNLRDLYINNCENLKSLPHQMQNLLSLQELNIRNCQGLESFPEC 1282

Query: 814  GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGT 873
            GL  NL SL I   + +   + E   G HR +SL  L I G    + S     +D  L  
Sbjct: 1283 GLAPNLTSLSIRDCVNLKVPLSE--WGLHRLTSLSSLYISGVCPSLASL---SDDECL-- 1335

Query: 874  TLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRI 933
               LP +L+ L I+   +L  L  ++ +L +L ++++Y CPKL+     GLP +L +L I
Sbjct: 1336 ---LPTTLSKLFISKLDSLVCL--ALKNLSSLERISIYRCPKLRSI---GLPETLSRLEI 1387

Query: 934  YRC 936
              C
Sbjct: 1388 RDC 1390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487416|ref|XP_002272889.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 377/994 (37%), Positives = 532/994 (53%), Gaps = 112/994 (11%)

Query: 6    EDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSF 65
            E+LG + F+EL SRSFFQ SS++ S+FVMHDL+NDLA   AGE+ F++    E ++    
Sbjct: 477  ENLGDDCFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKSVAGEMCFSLAEKLESSQPHII 536

Query: 66   SRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDS-SPGYLAPSILPKLL-KLQR 123
            S+  RH S+I   +   K+F   Y +++LRTF+ + +  S S  +L+  +L  L+ KL R
Sbjct: 537  SKKARHSSFIRGPFDVFKKFEAFYRMEYLRTFIALPIDASWSYRWLSNKVLEGLMPKLWR 596

Query: 124  LRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK 183
            LRV SL GY ISE+P S+GDL++LRYLNLSGT ++ LP+S+  LYNL +L+L  C +L +
Sbjct: 597  LRVLSLSGYQISEIPSSIGDLKHLRYLNLSGTRVKWLPDSIGNLYNLETLILSYCSKLIR 656

Query: 184  LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 243
            L   + NL  L HL+ ++T+ LEE PL I KL  LQ L  F+VGKD+G  + EL+ + HL
Sbjct: 657  LPLSIENLNNLRHLDVTDTN-LEEMPLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHL 715

Query: 244  RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKP 303
            +G L IS LENV +V +A++A L+ K+ L+EL + W+   D   S  A  ++ VL  L+P
Sbjct: 716  QGELCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLD--DSHNARNQIDVLGSLQP 773

Query: 304  HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGV 363
            H NL +  I  YGG +FP W+GD  FS +V +   +C  CT+LP +G LP LKH+ + G+
Sbjct: 774  HFNLNKLKIENYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGL 833

Query: 364  SRVKRLGSEFYGDD--SPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILE 421
              VK +G EFYG+      PFP LE+L F D+ +WE W S       E +P L  L I++
Sbjct: 834  KEVKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPTLS---EPYPCLLHLKIVD 890

Query: 422  CPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQN 481
            CPKL    P +LP L  L I GC + +  +  L +L K  +  C + V  S         
Sbjct: 891  CPKLIKKLPTNLPSLVHLSILGCPQWVPPLERLSSLSKLRVKDCNEAVLRSGLELPSLTE 950

Query: 482  SVVCRDTS-NQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSC------ 534
              + R     + H+G +Q +  L+ L+I GC +L  L  E   D  QQL   SC      
Sbjct: 951  LRIERIVGLTRLHEGCMQLLSGLQVLDICGCDELTCL-WENGFDGIQQLQTSSCPELVSL 1009

Query: 535  ----------RLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLK 584
                      +L+ L +  C  L KLP     L+ L E+EIY C  LVSFPE+  P  L+
Sbjct: 1010 GEKEKHEMPSKLQSLTISGCNNLEKLPNGLHRLTCLGELEIYGCPKLVSFPELGFPPMLR 1069

Query: 585  KIEIRECDALKSLPEPWMC---DTSSS------LEILKIWDCHSLTYIAEVQLPLSLKRL 635
            ++ I  C+ L+ LP+ WM    D S++      LE LKI  C SL    E +LP +LK+L
Sbjct: 1070 RLVIVGCEGLRCLPD-WMMVMKDGSNNGSDVCLLEYLKIDTCPSLIGFPEGELPTTLKQL 1128

Query: 636  DIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVG 695
             I  C K+ +L        S++   TS  L  L I  CPSLT  F   + P+TL+ LE  
Sbjct: 1129 RIWECEKLESLPGGMMHHDSNTTTATSGGLHVLDIWDCPSLT-FFPTGKFPSTLQKLE-- 1185

Query: 696  NLPPSVKVLDVYGCPKLESIAERL--DNNTSLETINISNCENLKILSSGLHNLCQLQQIG 753
                      ++ C +LESI+E +   NN+SLE ++IS+   LKI+   L+         
Sbjct: 1186 ----------IWDCAQLESISEEMFHSNNSSLEYLSISSYPCLKIVPDCLY--------- 1226

Query: 754  IGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED 813
                              KLR L+I  C+ +E  P  L NLT+L  LTI   E       
Sbjct: 1227 ------------------KLRELKINKCENVELQPYHLQNLTALTSLTISDCE------- 1261

Query: 814  GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGT 873
                      I+  +  W        G    +SL+ L I G       FPP         
Sbjct: 1262 ---------NIKTPLSRW--------GLATLTSLKKLTIGGI------FPPVASFSDGQR 1298

Query: 874  TLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYF-PEKGLPSSLLQL 931
               LP +LT LSI  F NL+SLSS ++  L +L +L +  CPKL+ F P +GLP +L +L
Sbjct: 1299 PPILPTTLTLLSINDFQNLKSLSSLALQTLTSLEELWIRCCPKLESFCPREGLPDTLSRL 1358

Query: 932  RIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGK 965
             I  CPL++++C K  GQ W  + HIPY +   K
Sbjct: 1359 YIKDCPLLKQRCSKRKGQDWPNIAHIPYVQTDDK 1392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495026|ref|XP_003634900.1| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera]

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 368/947 (38%), Positives = 535/947 (56%), Gaps = 72/947 (7%)

Query: 2    EKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNK 61
            +K  EDLG + F EL SRSFFQQSS+   RF+MHDLI+DLA   AG + F +E   E N 
Sbjct: 468  KKRMEDLGSKYFSELLSRSFFQQSSDVMPRFMMHDLIHDLAQSIAGNVSFNLEDKLE-NN 526

Query: 62   QQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDS---SPGYLAPSILPKL 118
            +  F +  RHLS+I +     K+F  +   ++LRTFL + ++ S   S  ++   +   L
Sbjct: 527  ENIFQKA-RHLSFIRQANEIFKKFEVVDKGKYLRTFLALPISVSFMKSLSFITTKVTHDL 585

Query: 119  L-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLED 177
            L +++ LRV SL GY +SELP S+ +L +LRYLNL  ++I+ LP SV  LYNL +L+L D
Sbjct: 586  LMEMKCLRVLSLSGYKMSELPSSIDNLSHLRYLNLCRSSIKRLPNSVGHLYNLQTLILRD 645

Query: 178  CDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSEL 237
            C  L ++   MGNLI L HL+ + T  LEE P  +G LT LQTL  F+VGK +GS + EL
Sbjct: 646  CWSLTEMPVGMGNLINLRHLDIAGTSQLEEMPPRMGCLTNLQTLSKFIVGKGNGSSIQEL 705

Query: 238  KLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGV 297
            K L+ L+G L I  L NV++  +A +A L  K +++EL + W  S D   SR    EM V
Sbjct: 706  KHLLDLQGELSIQGLHNVRNTRDAVDACLKNKCHIEELTMGW--SGDFDDSRNELNEMLV 763

Query: 298  LDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKH 357
            L++L+P +NL++  +  YGG KFP+W+G+  FS + +L  ++CG CT+LP +G+L  LK 
Sbjct: 764  LELLQPQRNLKKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKA 823

Query: 358  LTVRGVSRVKRLGSEFYGDDSPI-PFPCLETLRFEDLQEWEVWISHGSGQGVEG-FPKLR 415
            L ++G+ +VK +G EF+G+ S   PFPCLE+LRFED+ EWE W      +  EG F  LR
Sbjct: 824  LRIQGMCKVKTIGDEFFGEVSLFKPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLR 883

Query: 416  ELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATG 475
            EL I ECPKL G+ P  LP L  L I  C +L  ++  L  +C   +  C +VV  +   
Sbjct: 884  ELRIRECPKLTGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD 943

Query: 476  HLGSQNSVVCRDTSNQS--HDGLLQDICSLKSLEIRGCPKLQSLVAEE------------ 521
             L S  ++  +  S  +   +G  Q + +L+ L IRGC ++ SL                
Sbjct: 944  -LSSLTTLNIQRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFGLECLRGLESI 1002

Query: 522  --------EKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVS 573
                    E  ++Q+   L C L++L++  C  L +LP    SL+ L+E+ +  C  L S
Sbjct: 1003 DIWQCHGLESLEEQR---LPCNLKHLKIENCANLQRLPNGLQSLTCLEELSLQSCPKLES 1059

Query: 574  FPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLK 633
            FPE+ LP  L+ + +++C+ LK LP  +    S  LE L+I  C  L    E +LP SLK
Sbjct: 1060 FPEMGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGELPASLK 1116

Query: 634  RLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE 693
            +L I+ C  ++TL  E  +  +S     S  LE L I  C SL              SL 
Sbjct: 1117 QLKIKDCANLQTLP-EGMMHHNSMVSNNSCCLEVLEIRKCSSLP-------------SLP 1162

Query: 694  VGNLPPSVKVLDVYGCPKLESIAER-LDNNTSLETINISNCENLKILSSGLHNLCQLQQI 752
             G LP ++K L+++ C + + I+E+ L +NT+LE ++ISN  N+KIL   LH+L  L   
Sbjct: 1163 TGELPSTLKRLEIWDCRQFQPISEKMLHSNTALEHLSISNYPNMKILPGFLHSLTYLY-- 1220

Query: 753  GIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGE-LPSLE 811
             + GC  L SFPE GLP   LR L I +C+ L++LP  + NL SLQ+L I   + L S  
Sbjct: 1221 -MYGCQGLVSFPERGLPTPNLRDLYINNCENLKSLPHQMQNLLSLQELNIRNCQGLESFP 1279

Query: 812  EDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRL 871
            E GL  NL SL I   + +   + E   G HR +SL  L I G    + S     +D  L
Sbjct: 1280 ECGLAPNLTSLSIRDCVNLKVPLSE--WGLHRLTSLSSLYISGVCPSLASL---SDDDCL 1334

Query: 872  GTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLK 917
                 LP++L+ L   F   L+SL+  ++ +L +L ++++Y CPKL+
Sbjct: 1335 -----LPSTLSKL---FISKLDSLACLALKNLSSLERISIYRCPKLR 1373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	976
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.938	0.643	0.312	5.2e-89
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.536	0.497	0.371	1e-77
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.647	0.350	0.264	8.6e-16
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.165	0.104	0.346	1.5e-11
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.313	0.235	0.222	3.8e-11
TAIR|locus:2117149	1201	AT4G19050 [Arabidopsis thalian	0.396	0.322	0.252	5.2e-11
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.322	0.159	0.240	5.8e-11
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.232	0.175	0.251	8.1e-11
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.401	0.283	0.261	1e-08
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.302	0.248	0.232	1.1e-08

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 5.2e-89, P = 5.2e-89
 Identities = 317/1014 (31%), Positives = 480/1014 (47%)

Query:     6 EDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQSF 65
             ED+G +   +L ++SFFQ+     + FVMHDL+NDLA   +G+  F +E    + +  S 
Sbjct:   459 EDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLE-DDNIPEIPST 517

Query:    66 SRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGY-LAPSILPKLLK-LQR 123
             +R   H S+          F  +   + LRT LP     S     L   +L  LL  L  
Sbjct:   518 TR---HFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSG 574

Query:   124 LRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK 183
             LR+ SL  Y I+ LP S+  L+ LRYL+LS T I+ LPE V  L NL +LLL +C  L  
Sbjct:   575 LRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTS 634

Query:   184 LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 243
             L   +  LI L  L+   T  L E P GI KL  LQ L NFV+G+ SG+GL ELK L HL
Sbjct:   635 LPKSIAELINLRLLDLVGTP-LVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHL 693

Query:   244 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRS----TDGSSSREAETEMGVLD 299
             RG L IS+L+NV     AK+A L  K  L  L+L+WT        GS +  A  +  VL 
Sbjct:   694 RGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLR 753

Query:   300 MLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLT 359
             ML+PH +L+ F I  Y G  FP WLGDS F  + ++    C +C +LP VGQLPSLK+L+
Sbjct:   754 MLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLS 813

Query:   360 VRGVSRVKRLGSEFY-GDDSP--IPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRE 416
             +   + ++++G +F+ G+++   +PF  L+ L+F  +  W+ WI      G+  FP L++
Sbjct:   814 IEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQK 871

Query:   417 LHILECPKLRGTFPEHLPVLEMLVIEGCEELLVS---------VLSLPALCKFLIGGCKK 467
             L I  CP LR  FPE LP    + I  C    VS         + ++P     +    ++
Sbjct:   872 LIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVSGGENSFRRSLTNIPESPASIPSMSRR 931

Query:   468 VVWESATGHLGSQNSVVCRD---TSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKD 524
              +  S TG+  S  S   +    +S+QS+D    ++ S  SL     PK +     E+ D
Sbjct:   932 EL-SSPTGNPKSDASTSAQPGFASSSQSNDD--NEVTSTSSLS--SLPKDRQT---EDFD 983

Query:   525 QQQ-QLCELSCRLE---YLRLRYCEGLVKLPQXXXXXXXXKEI--EIYKCSSLV----SF 574
             Q + QL  L  + E    +  RY   +  +P           +  +     S++    S+
Sbjct:   984 QYETQLGSLPQQFEEPAVISARYSGYISDIPSTLSPYMSRTSLVPDPKNEGSILPGSSSY 1043

Query:   575 PEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKR 634
                    K      R  +A+K  P  +  D  + +E LK+ D   L     ++LP +L+ 
Sbjct:  1044 QYHQYGIKSSVPSPRSSEAIK--PSQYD-DDETDMEYLKVTDISHL-----MELPQNLQS 1095

Query:   635 LDIQRCNKIRTLTVEEGIQXXXXXXXXXXLLENLAISSCPSLTCIFSKNELPATLESLEV 694
             L I  C+ + +L   E +            L  L I +C SL   F  +  P TL++L +
Sbjct:  1096 LHIDSCDGLTSLP--ENLTESYPN------LHELLIIACHSLES-FPGSHPPTTLKTLYI 1146

Query:   695 G-----NLPPSVKVLDVYGCPKLESIAERLDNNTS--------LETINISNCENLKILS- 740
                   N   S++    Y   +   I     N  +        L +++I +CE+ K  S 
Sbjct:  1147 RDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFPLSLFPKLRSLSIRDCESFKTFSI 1206

Query:   741 -SGLHXXXXXXXXXXXXXX-XXESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQ 798
              +GL                  E+FP+GGLP  KL  + + +CK+L+ALP+ L  LTSL 
Sbjct:  1207 HAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLL 1266

Query:   799 QLTIIG-GELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGR-GFHRFSSLRYLLIRGCD 856
              L II   E+ ++   G P+NL +L I     +   +  R   G     +LR L I G +
Sbjct:  1267 SLFIIKCPEIETIPGGGFPSNLRTLCIS----LCDKLTPRIEWGLRDLENLRNLEIDGGN 1322

Query:   857 DDMVSFPPEPEDRRXXXXXXXXXXXXXXXIAFFPNLESLS-SSIVDLQNLTKLTLYDCPK 915
             +D+ SFP E                    I+ F NL++L+     D + +  + +  C K
Sbjct:  1323 EDIESFPEE---------GLLPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDK 1373

Query:   916 LKYFPEKGLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIAGKWVFN 969
             L+   ++ LP  L  LRI  C L+ E   +   +++ +L +IPY  I G+ +F+
Sbjct:  1374 LQISIDEDLPP-LSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEIDGE-IFS 1424

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 209/562 (37%), Positives = 305/562 (54%)

Query:     3 KTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQ 62
             K  E+LG E F EL SRS  Q++    +R++MHD IN+LA +A+GE  F+ ++      Q
Sbjct:   464 KNLEELGNEYFSELESRSLLQKTK---TRYIMHDFINELAQFASGE--FSSKFEDGCKLQ 518

Query:    63 QSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGY-LAPSILPKLLK- 120
                S   R+LSY+ + Y     F  L +++ LRTFLP+ LT+SS    L   +  KLL  
Sbjct:   519 --VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPT 576

Query:   121 LQRLRVFSLRGYHISELP-DSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCD 179
             L RLRV SL  Y I+ LP D   ++ + R+L+LS T +  LP+S+  +YNL +LLL  C 
Sbjct:   577 LTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCS 636

Query:   180 RLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKL 239
              LK+L  D+ NLI L +L+   T  L + P   G+L  LQTL  F V    GS +SEL  
Sbjct:   637 SLKELPTDISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGG 695

Query:   240 LMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW----TRSTDGSSSREAETEM 295
             L  L G L+I +L+ V DV +A EA L+ KK+L+E+   W    + S + ++    + E 
Sbjct:   696 LHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEA 755

Query:   296 GVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSL 355
              V + L+PH+++E+  I  Y G +FP WL D  FS +V +   +C  CT+LPS+GQLP L
Sbjct:   756 EVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCL 815

Query:   356 KHLTVRGVSRVKRLGSEFYGDDSPI------PFPCLETLRFEDLQEWEVWISHGSGQGVE 409
             K L + G+  ++ +G +FY  D  +      PF  LETLRF++L +W+ W+     +G +
Sbjct:   816 KELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-D 874

Query:   410 GFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEEL-------LVSVLSLPALCKFLI 462
              FP L++L IL CP+L GT P  LP L  L I  C  L         S  +L  L   + 
Sbjct:   875 LFPSLKKLFILRCPELTGTLPTFLPSLISLHIYKCGLLDFQPDHHEYSYRNLQTLS--IK 932

Query:   463 GGCKKVVWESATGHLGSQNSV-VCRDTSNQS---HDGLLQDICSLKSLEIRGCPKLQSLV 518
               C  +V +    H  + + + V + TS  S    +  L+   +L++L I  C  LQ L 
Sbjct:   933 SSCDTLV-KFPLNHFANLDKLEVDQCTSLYSLELSNEHLRGPNALRNLRINDCQNLQLLP 991

Query:   519 AEEEKDQQQQLCELSCRLEYLR 540
                   Q  Q+   +CR  YLR
Sbjct:   992 KLNALPQNLQVTITNCR--YLR 1011

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 257 (95.5 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
 Identities = 187/708 (26%), Positives = 283/708 (39%)

Query:     6 EDLGLEIFKELHSRSFFQQ--SSNDASR-FVMHDLINDLAHWAAGEIYFTMEYTSEVNKQ 62
             E  G +   EL +  F QQ  S+  +S  FVMHDL++DLA   +   Y T++  SE  + 
Sbjct:   596 EQKGWKYLAELVNSGFLQQVESTRFSSEYFVMHDLMHDLAQKVSQTEYATID-GSECTEL 654

Query:    63 QSFSRYLRHLS---YIPEYY-------VGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAP 112
                 R+L  ++   Y  E Y       V  KR   +     LR+ + +   DS   +   
Sbjct:   655 APSIRHLSIVTDSAYRKEKYRNISRNEVFEKRLMKVKSRSKLRSLVLIGQYDS---HFFK 711

Query:   113 SILPKLLKLQRLRVFSLRG-YHISE-LPDSVGDLRYLRYLNL-SGTNIRTLPESVNKLYN 169
                    + Q LR+  +   Y  S+    S+ +  +LRYL + +  + RTLP S+ K Y+
Sbjct:   712 YFKDAFKEAQHLRLLQITATYADSDSFLSSLVNSTHLRYLKIVTEESGRTLPRSLRKYYH 771

Query:   170 LHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKD 229
             L  L +     + ++  D+ NL+ L HL     D +  +   IGK+T LQ L NF+V  +
Sbjct:   772 LQVLDIGYRFGIPRISNDINNLLSLRHL--VAYDEVCSSIANIGKMTSLQELGNFIVQNN 829

Query:   230 -SGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSS 288
              SG  +++LK +  L   L +S+LENV+    A  A+L  K++L++L L W  + +G  S
Sbjct:   830 LSGFEVTQLKSMNKLV-QLSVSQLENVRTQEEACGAKLKDKQHLEKLHLSWKDAWNGYDS 888

Query:   289 REA-ETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALP 347
              E+ E E G  DM    +  E+  +    G +       ++ S L + E  + G+    P
Sbjct:   889 DESYEDEYGS-DMNIETEG-EELSVGDANGAQ-SLQHHSNISSELASSEVLE-GL---EP 941

Query:   348 SVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFP----CLETLRFEDLQEWEVWISHG 403
               G    LK+L + G          + G  SP   P    CL+TL  E   +W++     
Sbjct:   942 HHG----LKYLRISG----------YNGSTSPTWLPSSLTCLQTLHLEKCGKWQILPLER 987

Query:   404 SGQGVE-GFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEEL-----LVSVLSLPAL 457
              G  V+    K+R    L  P L       LP L          L     ++ + + P L
Sbjct:   988 LGLLVKLVLIKMRNATELSIPSLEELVLIALPSLNTCSCTSIRNLNSSLKVLKIKNCPVL 1047

Query:   458 CKF-LIGGCKKVVWESATGHLGSQNSVVCRDTSNQS-HDGLLQDICSLKSLEIRGC--PK 513
               F L    +K   E  +  L   + +   +      H  L     S    E   C  P+
Sbjct:  1048 KVFPLFEISQKFEIERTSSWLPHLSKLTIYNCPLSCVHSSLPPSAISGYG-EYGRCTLPQ 1106

Query:   514 -LQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQXXXXX-XXXKEIEIYKCSSL 571
              L+ L   E   +  Q C  S  L  LR  +  G   L           +E+ I  C SL
Sbjct:  1107 SLEELYIHEYSQETLQPC-FSGNLTLLRKLHVLGNSNLVSLQLHSCTALEELIIQSCESL 1165

Query:   572 VSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLS 631
              S   + L   L+ +    C  L    E   C    SLE L I   H   Y  E   P  
Sbjct:  1166 SSLDGLQLLGNLRLLRAHRC--LSGHGEDGRCILPQSLEELYI---HE--YSQETLQPCF 1218

Query:   632 LKRLDIQRCNKIRTLTVEEGIQXXXXXXXXXXLLENLAISSCPSLTCI 679
                L +     +R L V                LE L I SC SL+ +
Sbjct:  1219 SGNLTL-----LRKLHVLGNSNLVSLQLHSCTALEELIIQSCESLSSL 1261

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 60/173 (34%), Positives = 81/173 (46%)

Query:   111 APSILP-KLLKLQRLRVFSLRGYH-ISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLY 168
             A S LP  + +LQ+L   SL G   I ELP  VG L  L  L L  T +R LP S+  L 
Sbjct:   949 AISNLPYSIFRLQKLEKLSLMGCRSIEELPSCVGYLTSLEDLYLDDTALRNLPSSIGDLK 1008

Query:   169 NLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL----CNF 224
             NL  L L  C  L  +   +  L+ L  L   N  ++EE P+  G L CL  L    C F
Sbjct:  1009 NLQKLHLMRCTSLSTIPETINKLMSLKELF-INGSAVEELPIETGSLLCLTDLSAGDCKF 1067

Query:   225 VVGKDSGSGLSELKLLMHLR-GALEISKL-ENVKDVGNAKEARLDGKKNLKEL 275
             +  K   S +  L  L+ L+  +  I  L E + D+   ++  L   K+LK L
Sbjct:  1068 L--KQVPSSIGGLNSLLQLQLDSTPIEALPEEIGDLHFIRQLDLRNCKSLKAL 1118

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
 Identities = 79/355 (22%), Positives = 151/355 (42%)

Query:   413 KLRELHILECPKLRGTFPE--HLPVLEMLVIEGCEELLVSVLSLPALCKFLIG-GCKKVV 469
             +L  L + EC  L    P   +L  LE L + GC     S+ S P +   ++    +   
Sbjct:   821 RLVRLEMKECTGLE-VLPTDVNLSSLETLDLSGCS----SLRSFPLISTNIVWLYLENTA 875

Query:   470 WESATGHLGSQNSVVCRDTSNQSHDGLLQ---DICSLKSLEIRGCPKLQS--LVAEE--- 521
              E     +G+ + +V  +    +   +L    ++ SL++L++ GC  L+S  L++E    
Sbjct:   876 IEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISESIKW 935

Query:   522 ---EKDQQQQLCELS--CRLEYLRLRYCEGLVKLPQXXXXXXXXKEIEIYKCSSLVSFP- 575
                E    +++ +LS    L+ L+L  C+ LV LP            E+ +C+ L   P 
Sbjct:   936 LYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPI 995

Query:   576 EVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLS---- 631
             +V L S L  +++  C +L++ P   +  T+       +W     T I E+   +     
Sbjct:   996 DVNL-SSLMILDLSGCSSLRTFP---LISTNI------VWLYLENTAIEEIPSTIGNLHR 1045

Query:   632 LKRLDIQRCNKIRTLTVEEGIQXXXXXXXXX-XLLENLAISSCPSLTCIFSKN----ELP 686
             L +L+++ C  +  L  +  +             L    + S   + C++ +N    E+P
Sbjct:  1046 LVKLEMKECTGLEVLPTDVNLSSLMILDLSGCSSLRTFPLIST-RIECLYLQNTAIEEVP 1104

Query:   687 ATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCEN-LKILS 740
               +E          + VL +Y C +L++I+  +   T LE  + ++C   +K LS
Sbjct:  1105 CCIEDFT------RLTVLMMYCCQRLKTISPNIFRLTRLELADFTDCRGVIKALS 1153

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
 Identities = 112/444 (25%), Positives = 181/444 (40%)

Query:   115 LPKLLKLQRLRVFSLRGYH-ISELPDSV-GDLRYLRYLNLSGTNIRTLPESVNKLYNLHS 172
             + KL  LQ L V  + G   +  +PD    ++  L+ LNLSG  I++ P ++ KL  L  
Sbjct:   484 IDKLSGLQGLHVLEVSGASSLVNIPDDFFKNMTQLQSLNLSGLAIKSSPSTIEKLSMLRC 543

Query:   173 LLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPL-GIGKL-TCLQTLCNFVVGKDS 230
              +L  C  L+    D+ N I         T  LE   + G  KL +    + ++   K  
Sbjct:   544 FILRHCSELQ----DLPNFIV-------ETRKLEVIDIHGARKLESYFDRVKDWKDYKGK 592

Query:   231 GSGLSELKLLMHLRGALEISKLENVK-DVGNAKEARLDGKKN--LKELLLR-WTRSTDGS 286
                 ++L+LL HL    + S+ + ++  + + K++  D      L  LLLR  TR     
Sbjct:   593 NKNFAQLQLLEHL----DFSETKIIRLPIFHLKDSTNDFSTMPILTRLLLRNCTRLKRLP 648

Query:   287 SSREAETEMGVLDMLKPHKNLEQFGIC----------GYGGTKFPTWLGDSLFS--NLVT 334
               R   T + +LD       +E   +C              T  P  L D++    NL  
Sbjct:   649 QLRPL-TNLQILDACGATDLVEMLEVCLEEKKELRILDMSKTSLPE-LADTIADVVNLNK 706

Query:   335 LEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQ 394
             L   +C +   LPS+ +L  L+   V G  ++K +   F G+ S +    L      +L 
Sbjct:   707 LLLRNCSLIEELPSIEKLTHLEVFDVSGCIKLKNINGSF-GEMSYLHEVNLSETNLSELP 765

Query:   395 EWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFP--EHLPVLEMLVIEGCEELLV--- 449
             +    IS  S         L+EL I +C KL+ T P  E L  LE+  + GC EL     
Sbjct:   766 DK---ISELSN--------LKELIIRKCSKLK-TLPNLEKLTNLEIFDVSGCTELETIEG 813

Query:   450 SVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIR 509
             S  +L  L K  +         +    L +   ++ R+ S       L+ +  L   ++ 
Sbjct:   814 SFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALPNLEKLTHLVIFDVS 873

Query:   510 GCPKLQSLVAEEEKDQQQQLCELS 533
             GC  L  +  EE  +    LCE++
Sbjct:   874 GCTNLDKI--EESFESMSYLCEVN 895

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
 Identities = 85/353 (24%), Positives = 143/353 (40%)

Query:   472 SATGHLGSQNSVVCRD--TSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQL 529
             S  G LG    V+C    TS        +++  L+SL++  C  L  L +        Q 
Sbjct:   705 SCVGKLGKLQ-VLCLHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQN 763

Query:   530 CELSCRLEYLRLRYCEGLVKLPQXXXXXXXXKEIEIYKCSSLVSFPEVALPSKLKKIEIR 589
              +L C      LR    L+KLP         K+  +  CSSLV  P +   + L+ +++ 
Sbjct:   764 LDLGC------LR----LLKLPLSIVKFTNLKKFILNGCSSLVELPFMGNATNLQNLDLG 813

Query:   590 ECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAE-VQLPLSLKRLDIQRCNKIRTLTV 648
              C +L  LP       + +L+ L + +C SL  +   +    +L+ LD+++C+ +  +  
Sbjct:   814 NCSSLVELPSS--IGNAINLQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPT 871

Query:   649 EEGIQXXXXXXXXXXLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKV----- 703
               G             L  L +S C SL  + S     + L+ L + N    VK+     
Sbjct:   872 SIG---------HVTNLWRLDLSGCSSLVELPSSVGNISELQVLNLHNCSNLVKLPSSFG 922

Query:   704 -------LDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHXXXXXXXXXXXX 756
                    LD+ GC  L  +   + N T+L+ +N+ NC NL  L S +             
Sbjct:   923 HATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNLVKLPSSIGNLHLLFTLSLAR 982

Query:   757 XXXXESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPS 809
                 E+ P   +    L RL++ DC + ++ P+   N+  L        E+PS
Sbjct:   983 CQKLEALPSN-INLKSLERLDLTDCSQFKSFPEISTNIECLYLDGTAVEEVPS 1034

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
 Identities = 64/254 (25%), Positives = 119/254 (46%)

Query:   561 KEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSL 620
             K++++ +C  LV  P+++  + L+++ +  C +L         + + S++ LK   C  L
Sbjct:   628 KKMDLSRCKYLVEVPDLSKATNLEELNLSYCQSL--------VEVTPSIKNLKGLSCFYL 679

Query:   621 TYIAEVQ-LPL-----SLKRLDIQRCNKIRTLTVEEGIQXXXXXXXXXXLLENLAISSCP 674
             T   +++ +P+     SL+ + +  C+ ++     E              +E L  SS  
Sbjct:   680 TNCIQLKDIPIGIILKSLETVGMSGCSSLKHFP--EISWNTRRLYLSSTKIEELP-SSIS 736

Query:   675 SLTCI----FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINI 730
              L+C+     S  +   TL S  +G+L  S+K L++ GC +LE++ + L N TSLET+ +
Sbjct:   737 RLSCLVKLDMSDCQRLRTLPSY-LGHLV-SLKSLNLDGCRRLENLPDTLQNLTSLETLEV 794

Query:   731 SNCENLKILSSGLHXXXXXXXXXXXXXXXXESFPEGGLPCAKLRRLEIYDCKRLEALPKG 790
             S C N+    +                   E  P      ++LR L+I + KRL +LP  
Sbjct:   795 SGCLNV----NEFPRVSTSIEVLRISETSIEEIPARICNLSQLRSLDISENKRLASLPVS 850

Query:   791 LHNLTSLQQLTIIG 804
             +  L SL++L + G
Sbjct:   851 ISELRSLEKLKLSG 864

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 116/443 (26%), Positives = 178/443 (40%)

Query:   115 LPKLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSL 173
             LP+ + +LQ L + SLRG  I ELP  +G L+ L  L L  T ++ LP S+  L NL  L
Sbjct:   780 LPESINRLQNLEILSLRGCKIQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDL 839

Query:   174 LLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVG-----K 228
              L  C  L K+   +  L  L  L   N  ++EE PL   K + L +L +F  G     K
Sbjct:   840 HLVRCTSLSKIPDSINELKSLKKLF-INGSAVEELPL---KPSSLPSLYDFSAGDCKFLK 895

Query:   229 DSGSGLSELKLLMHLRGALEISKLENV-KDVGNAKEARLDGKKNLKELLLRWTRSTDGSS 287
                S +  L  L+ L+  L  + +E + +++G     R    +N K   L++   + G  
Sbjct:   896 QVPSSIGRLNSLLQLQ--LSSTPIEALPEEIGALHFIRELELRNCK--FLKFLPKSIG-- 949

Query:   288 SREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALP 347
                   +M  L  L    NLE   I      + P   G      LV L   +C M   LP
Sbjct:   950 ------DMDTLYSL----NLEGSNI-----EELPEEFGK--LEKLVELRMSNCKMLKRLP 992

Query:   348 -SVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQ 406
              S G L SL  L ++  + V  L   F    + +    L+   F  + E  V  +    +
Sbjct:   993 ESFGDLKSLHRLYMKE-TLVSELPESFGNLSNLMVLEMLKKPLFR-ISESNVPGTSEEPR 1050

Query:   407 GVE---GFPKLRELHILE-CP-KLRGTFPEHLPVLEMLVIEGC-----EELLVSVLSLPA 456
              VE    F KL +L  L+ C  ++ G  P+ L  L  L+           L  S++ L  
Sbjct:  1051 FVEVPNSFSKLLKLEELDACSWRISGKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVKLSN 1110

Query:   457 LCKFLIGGCKKVV-WESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQ 515
             L +  +  C+++         L   N   C    + S    L ++  L  L +  C K+ 
Sbjct:  1111 LQELSLRDCRELKRLPPLPCKLEQLNLANCFSLESVSD---LSELTILTDLNLTNCAKVV 1167

Query:   516 SLVAEEEKDQQQQLCELSCRLEY 538
              +   E     ++L    C   Y
Sbjct:  1168 DIPGLEHLTALKRLYMTGCNSNY 1190

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 72/310 (23%), Positives = 128/310 (41%)

Query:   536 LEYLRLRYCEGLVKLPQXXXXXXXXKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDAL 594
             L+ LRL  C  LV+LP          E+++  CSSLV  P  +   + LKK+ +  C +L
Sbjct:   682 LQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSL 741

Query:   595 KSLPEPWMCDTSSSLEILKIWDCHSLTYI-AEVQLPLSLKRLDIQRCNKIRTLTVEEGIQ 653
               LP  +     +SL+ L +  C SL  I + +   ++LK++    C+ +  L    G  
Sbjct:   742 VKLPSSF--GNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIG-- 797

Query:   654 XXXXXXXXXXLLENLAISSCPSLTCIFSKNE---LPATLESLEVGNLPPSVKVLDVY--G 708
                       LL   ++  CPS     ++ E   L   L  +++ ++   + +  +Y   
Sbjct:   798 -NNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSD 856

Query:   709 CPKLESIAERLDNNTSLETINISNCENLKILSSGLHXXXXXXXXXXXXXXXXESFPEGGL 768
             C  L  +   ++N T+L+T+ +  C NL  L S +                 +  P    
Sbjct:   857 CSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVE 916

Query:   769 PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEEDGLPTNLHSLRIEGN 827
                 L+ L +  C  L  LP  +  +++L  L +     L  L     P    SL ++  
Sbjct:   917 NAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSLILDA- 975

Query:   828 MGIWKSMIER 837
              G  +S+++R
Sbjct:   976 -GDCESLVQR 984

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	976
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-10
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 64.5 bits (157), Expect = 2e-10
 Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 44/240 (18%)

Query: 701 VKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNL 760
           ++ +D+ G   L+ I + L   T+LET+ +S+C +L  L S +  L +L+ + +  C NL
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694

Query: 761 ESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLH 820
           E  P G +    L RL +  C RL++ P    N++ L     +     ++EE   P+NL 
Sbjct: 695 EILPTG-INLKSLYRLNLSGCSRLKSFPDISTNISWL----DLDET--AIEE--FPSNLR 745

Query: 821 SLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPL--- 877
                                    +L  L+       +     E    R+    PL   
Sbjct: 746 -----------------------LENLDELI-------LCEMKSEKLWERVQPLTPLMTM 775

Query: 878 -PASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRC 936
              SLT L ++  P+L  L SSI +L  L  L + +C  L+  P      SL  L +  C
Sbjct: 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 45/234 (19%)

Query: 532 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIREC 591
           ++  LE L+L  C  LV+LP S   L+ L+++++ +C +L   P       L ++ +  C
Sbjct: 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714

Query: 592 DALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEG 651
             LKS P     D S+++  L + +    T I E    L L+ LD     ++++  + E 
Sbjct: 715 SRLKSFP-----DISTNISWLDLDE----TAIEEFPSNLRLENLDELILCEMKSEKLWER 765

Query: 652 IQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPK 711
           +Q           L  L     PSLT +F  + +P+ +E      LP S++         
Sbjct: 766 VQ----------PLTPLMTMLSPSLTRLFLSD-IPSLVE------LPSSIQ--------- 799

Query: 712 LESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE 765
                    N   LE + I NC NL+ L +G+ NL  L+ + + GC  L +FP+
Sbjct: 800 ---------NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 58.0 bits (140), Expect = 2e-08
 Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 39/235 (16%)

Query: 583 LKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLS------LKRLD 636
           L+ I++R    LK +P+  M   +++LE LK+ DC SL     V+LP S      L+ LD
Sbjct: 636 LRNIDLRGSKNLKEIPDLSM---ATNLETLKLSDCSSL-----VELPSSIQYLNKLEDLD 687

Query: 637 IQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCI--FSKNELPATLESLEV 694
           + RC  +  L     ++S          L  L +S C  L      S N     L+   +
Sbjct: 688 MSRCENLEILPTGINLKS----------LYRLNLSGCSRLKSFPDISTNISWLDLDETAI 737

Query: 695 GNLPPSVKVLDVYGCPKLESIAERLDNNT------------SLETINISNCENLKILSSG 742
              P ++++ ++      E  +E+L                SL  + +S+  +L  L S 
Sbjct: 738 EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797

Query: 743 LHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSL 797
           + NL +L+ + I  C NLE+ P  G+    L  L++  C RL   P    N++ L
Sbjct: 798 IQNLHKLEHLEIENCINLETLPT-GINLESLESLDLSGCSRLRTFPDISTNISDL 851

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.9 bits (119), Expect = 8e-06
 Identities = 89/343 (25%), Positives = 141/343 (41%), Gaps = 62/343 (18%)

Query: 118 LLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGT-NIRTLPESVNKLYNLHSLLLE 176
           L+KLQ      ++G  + +L D V  L  LR ++L G+ N++ +P+ ++   NL +L L 
Sbjct: 613 LVKLQ------MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665

Query: 177 DCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSE 236
           DC  L +L + +  L KL  L+ S  ++LE  P GI     L++L      + + SG S 
Sbjct: 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKSL-----YRLNLSGCSR 716

Query: 237 LKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMG 296
           LK    +   +    L+           RL+   NL EL+L   +S       +  T + 
Sbjct: 717 LKSFPDISTNISWLDLDETAIEEFPSNLRLE---NLDELILCEMKSEKLWERVQPLTPL- 772

Query: 297 VLDMLKPHKNLEQFGICGYGGTKFPTW--LGDSL--FSNLVTLEFEDCGMCTALPSVGQL 352
            + ML P  +L +  +     +  P+   L  S+     L  LE E+C     LP+   L
Sbjct: 773 -MTMLSP--SLTRLFL-----SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL 824

Query: 353 PSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLET------LRFEDLQEWEVWISHGSGQ 406
            SL+ L + G SR++              FP + T      L    ++E   WI      
Sbjct: 825 ESLESLDLSGCSRLR-------------TFPDISTNISDLNLSRTGIEEVPWWI------ 865

Query: 407 GVEGFPKLRELHILECPKLRGTFPE--HLPVLEMLVIEGCEEL 447
             E F  L  L +  C  L+        L  LE +    C  L
Sbjct: 866 --EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 67/253 (26%), Positives = 101/253 (39%), Gaps = 61/253 (24%)

Query: 529 LCELSCRLEYLR------LRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVA---- 578
           L EL   ++YL       +  CE L  LP + ++L SL  + +  CS L SFP+++    
Sbjct: 670 LVELPSSIQYLNKLEDLDMSRCENLEILP-TGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

Query: 579 -----------LPSKLKK---IEIRECDAL-------KSLPEPWMCDTSSSLEILKIWDC 617
                       PS L+     E+  C+              P M   S SL  L + D 
Sbjct: 729 WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788

Query: 618 HSLTYIAEVQLPLS------LKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAIS 671
            SL     V+LP S      L+ L+I+ C  + TL    GI   S        LE+L +S
Sbjct: 789 PSL-----VELPSSIQNLHKLEHLEIENCINLETLPT--GINLES--------LESLDLS 833

Query: 672 SCPSLTCI--FSKNELPATLESLEVGNLPPSVK------VLDVYGCPKLESIAERLDNNT 723
            C  L      S N     L    +  +P  ++       LD+ GC  L+ ++  +    
Sbjct: 834 GCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893

Query: 724 SLETINISNCENL 736
            LET++ S+C  L
Sbjct: 894 HLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 133 HISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI 192
            +S+LP  + +L  L  L+LSG  I  LP  +  L  L  L L + + + +L + + NL 
Sbjct: 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLK 232

Query: 193 KLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
            L  L  SN   LE+ P  IG L+ L+TL
Sbjct: 233 NLSGLELSNN-KLEDLPESIGNLSNLETL 260

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 123 RLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCD 179
            L+   L    ++ +PD     L  L+ L+LSG N+ ++ PE+ + L +L SL L   +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 48/217 (22%), Positives = 77/217 (35%), Gaps = 45/217 (20%)

Query: 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQ----LQQI 752
           L   ++ L++Y CP  +   ++L N   L+ + +       I   GL  L Q    LQ +
Sbjct: 26  LHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGS--KLIDDEGLIALAQSCPNLQVL 83

Query: 753 GIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE 812
            +  C N+      G+            C +L+ +  G H    L    I    L +L +
Sbjct: 84  DLRACENITDS---GIVALATN------CPKLQTINLGRHRNGHL----ITDVSLSALGK 130

Query: 813 DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLG 872
               T L ++   G     K + E   G     SL  L +  C              R  
Sbjct: 131 --NCTFLQTVGFAGCDVTDKGVWELASG--CSKSLERLSLNNC--------------RNL 172

Query: 873 TTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLT 909
           T   +PA L S     FPNL     S+++ +    +T
Sbjct: 173 TDQSIPAILASNY---FPNL-----SVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	976
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.52
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.45
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.15
KOG4341	483	consensus F-box protein containing LRR [General fu	98.97
KOG4341	483	consensus F-box protein containing LRR [General fu	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.77
PRK15386	426	type III secretion protein GogB; Provisional	98.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.69
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.64
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.61
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.6
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
PLN03150	623	hypothetical protein; Provisional	98.34
PRK15386	426	type III secretion protein GogB; Provisional	98.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.3
PLN03150	623	hypothetical protein; Provisional	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.06
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.06
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.83
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.7
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.1
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.8
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.32
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.31
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.57
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.52
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.75
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.62
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.59
smart00370	26	LRR Leucine-rich repeats, outliers.	91.59
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.91
smart00370	26	LRR Leucine-rich repeats, outliers.	85.91

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-40  Score=416.59  Aligned_cols=301  Identities=16%  Similarity=0.131  Sum_probs=174.0

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEIL  612 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L  612 (976)
                      ++|+.|++++|.....+|..+..+++|+.|++++|.....+|. ...+++|+.|++++|.....+|....  .+++|+.|
T Consensus       284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L  361 (968)
T PLN00113        284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--KHNNLTVL  361 (968)
T ss_pred             cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh--CCCCCcEE
Confidence            5777777777777777887888888888888888544444443 34467788888888775445554433  56677777


Q ss_pred             EEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccc
Q 048829          613 KIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES  691 (976)
Q Consensus       613 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  691 (976)
                      ++++|.....++.. ....+|+.|++++|...+.+  |..+..                                     
T Consensus       362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~--p~~~~~-------------------------------------  402 (968)
T PLN00113        362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI--PKSLGA-------------------------------------  402 (968)
T ss_pred             ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC--CHHHhC-------------------------------------
Confidence            77766443333332 22344555555555432222  111111                                     


Q ss_pred             ccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCC
Q 048829          692 LEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCA  771 (976)
Q Consensus       692 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  771 (976)
                           + ++|+.|++++|++.+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+ ..+
T Consensus       403 -----~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~  475 (968)
T PLN00113        403 -----C-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSK  475 (968)
T ss_pred             -----C-CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccc
Confidence                 0 556666666666666666666666667777776665555556555666667777777665555555432 345


Q ss_pred             CccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829          772 KLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY  849 (976)
Q Consensus       772 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  849 (976)
                      +|+.|++++|...+.+|..+.++++|++|++++|.+....+.  ..+++|++|++++|.+....+    ..+..+++|+.
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~  551 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQ  551 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC----hhHhCcccCCE
Confidence            666667766666566666666666666666666666532211  234455555555555554444    23455555555


Q ss_pred             EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcccc
Q 048829          850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLS  896 (976)
Q Consensus       850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  896 (976)
                      |++++ |...+.+|...         ..+++|+.|++++|+..+.+|
T Consensus       552 L~Ls~-N~l~~~~p~~l---------~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        552 LDLSQ-NQLSGEIPKNL---------GNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             EECCC-CcccccCChhH---------hcCcccCEEeccCCcceeeCC
Confidence            55555 33334444433         244555555555544444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.8e-40  Score=410.92  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829          700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY  779 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  779 (976)
                      +|+.|++++|++.+.+|..+.++++|++|++++|...+.+|..+.++++|++|++++|...+.+|..+..+++|+.|+++
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence            45555555555555555555555555555555554444555555555555555555554444455545555555555555


Q ss_pred             CCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829          780 DCKRLEALPKGLHNLTSLQQLTIIGGELP  808 (976)
Q Consensus       780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~  808 (976)
                      +|...+.+|..+..+++|+.|++++|.+.
T Consensus       556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             CCcccccCChhHhcCcccCEEeccCCcce
Confidence            55555555555555555555555554443

>PLN03210 Resistant to P

Probab=99.97  E-value=4.3e-29  Score=310.78  Aligned_cols=204  Identities=18%  Similarity=0.193  Sum_probs=132.0

Q ss_pred             HHHHHhCCCceeecCCCCcEEEchhHHHHHHHHhccce-------EEEecccc--cccccccccceeEEEeecccccCCc
Q 048829           13 FKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIY-------FTMEYTSE--VNKQQSFSRYLRHLSYIPEYYVGGK   83 (976)
Q Consensus        13 ~~~L~~r~l~~~~~~~~~~~~mHDlv~dla~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~r~ls~~~~~~~~~~   83 (976)
                      ++.|+++||++...   ..++|||++||||+++++++.       +.+.....  .........+++++++.........
T Consensus       472 l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~  548 (1153)
T PLN03210        472 LKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH  548 (1153)
T ss_pred             hHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence            88999999998764   469999999999999987653       22222100  0001122356777776554332211


Q ss_pred             -ccccccCCCCccEeccccccCCCCCCCccccccccccC-CcccEEEccCCccccccccccCCCcccEEecCCCCccccc
Q 048829           84 -RFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKL-QRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP  161 (976)
Q Consensus        84 -~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp  161 (976)
                       ...+|.++++||.|.+..............+|.++..+ ..||+|++.++.+..+|..| ...+|++|++++|.+..+|
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc
Confidence             12346677888887665432100111223455555533 46888888888777777776 4678888888888887787


Q ss_pred             hhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCcee
Q 048829          162 ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL  221 (976)
Q Consensus       162 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  221 (976)
                      ..+..+++|++|+|++|+.+..+| .++.+++|++|++++|..+..+|..++++++|+.|
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            777778888888888776677776 47777788888887776566666655555555544

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.96  E-value=7e-29  Score=290.90  Aligned_cols=390  Identities=28%  Similarity=0.340  Sum_probs=246.3

Q ss_pred             CCCcHHHHHHHHHHHHHhCCCceeec--CCCCcEEEchhHHHHHHHHhc-----cceEEEecc--cccccccccccceeE
Q 048829            1 REKTGEDLGLEIFKELHSRSFFQQSS--NDASRFVMHDLINDLAHWAAG-----EIYFTMEYT--SEVNKQQSFSRYLRH   71 (976)
Q Consensus         1 ~~~~~ed~g~~~~~~L~~r~l~~~~~--~~~~~~~mHDlv~dla~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~   71 (976)
                      +|++++|+|++|+.+||+|||++..+  +...+|+|||+|||||.|+|+     ++.+++..+  ....+....+..+||
T Consensus       448 ~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr  527 (889)
T KOG4658|consen  448 GGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRR  527 (889)
T ss_pred             cccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeE
Confidence            37899999999999999999999876  466899999999999999999     565554432  111123345678999


Q ss_pred             EEeecccccCCcccccccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCc-cccccccccCCCcccE
Q 048829           72 LSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYH-ISELPDSVGDLRYLRY  149 (976)
Q Consensus        72 ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~-i~~lp~~~~~L~~L~~  149 (976)
                      ++++.+..   .....-..+++|+||.+..+..     -...++..|| .++.||||||++|. +..+|.+|+.|.+|||
T Consensus       528 ~s~~~~~~---~~~~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  528 MSLMNNKI---EHIAGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             EEEeccch---hhccCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            99998765   3345556778999999988742     1356788888 99999999999876 7899999999999999


Q ss_pred             EecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCceecceEecCC
Q 048829          150 LNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKD  229 (976)
Q Consensus       150 L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~  229 (976)
                      |+|+++.|..+|..+++|+.|.+||+.++..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.....
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecc
Confidence            999999999999999999999999999977777777667789999999998765 2222233666667777655555443


Q ss_pred             CCCCchhhhcccccc---CceEEeecCCCCChhhhhhhccCCCCCCceEEEEEccCCCCCCChhhhhHhhhccCCC---C
Q 048829          230 SGSGLSELKLLMHLR---GALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLK---P  303 (976)
Q Consensus       230 ~~~~~~~L~~L~~L~---~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~---~  303 (976)
                      +...+..+..+..|+   ..+.+..     .........+..+.+|+.|.+..+...+...        .......   .
T Consensus       679 s~~~~e~l~~~~~L~~~~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~--------~~~~~~~~~~~  745 (889)
T KOG4658|consen  679 SVLLLEDLLGMTRLRSLLQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVI--------EWEESLIVLLC  745 (889)
T ss_pred             hhHhHhhhhhhHHHHHHhHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhc--------ccccccchhhh
Confidence            332223333333333   1111110     1122223345556666666666544321100        0000000   1


Q ss_pred             CCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCCC-CCCCCCCCCceEEEeCCCCceeeCccccCCCCCCCC
Q 048829          304 HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTAL-PSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPF  382 (976)
Q Consensus       304 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~  382 (976)
                      ++++..+.+........+.|...  .++|+.|.+..|...+.+ |....+..++.+.+                    .|
T Consensus       746 f~~l~~~~~~~~~~~r~l~~~~f--~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~--------------------~f  803 (889)
T KOG4658|consen  746 FPNLSKVSILNCHMLRDLTWLLF--APHLTSLSLVSCRLLEDIIPKLKALLELKELIL--------------------PF  803 (889)
T ss_pred             HHHHHHHHhhccccccccchhhc--cCcccEEEEecccccccCCCHHHHhhhcccEEe--------------------cc
Confidence            22333444444444444554432  456666666666544332 23333333333221                    14


Q ss_pred             CCccee-ecccccccccccccCCCCCccCCcccceeecccCcccccCCCCCCCCcceEEEecc
Q 048829          383 PCLETL-RFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGC  444 (976)
Q Consensus       383 ~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~~  444 (976)
                      .+++.+ .+.+.+.+.......     -.++.|+.+.+..||++. .    +|.+.++.+.+|
T Consensus       804 ~~~~~l~~~~~l~~l~~i~~~~-----l~~~~l~~~~ve~~p~l~-~----~P~~~~~~i~~~  856 (889)
T KOG4658|consen  804 NKLEGLRMLCSLGGLPQLYWLP-----LSFLKLEELIVEECPKLG-K----LPLLSTLTIVGC  856 (889)
T ss_pred             cccccceeeecCCCCceeEecc-----cCccchhheehhcCcccc-c----Cccccccceecc
Confidence            444444 344444444333222     235557777777777775 3    344555666665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=7.5e-31  Score=261.23  Aligned_cols=283  Identities=21%  Similarity=0.234  Sum_probs=175.9

Q ss_pred             CCCCCccEEEeecCCCCCCCCCcC-CCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcc---cccc---c
Q 048829          555 LSLSSLKEIEIYKCSSLVSFPEVA-LPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTY---IAEV---Q  627 (976)
Q Consensus       555 ~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~---~~~~---~  627 (976)
                      ..++++..||+.+ ++++++|... .+.+|+.|++++|. ++.+|....  ++ .|+.|.+.+|+.-+.   +-..   .
T Consensus       249 ~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLg--nl-hL~~L~leGNPlrTiRr~ii~~gT~~  323 (565)
T KOG0472|consen  249 KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLG--NL-HLKFLALEGNPLRTIRREIISKGTQE  323 (565)
T ss_pred             cccccceeeeccc-cccccCchHHHHhhhhhhhcccCCc-cccCCcccc--cc-eeeehhhcCCchHHHHHHHHcccHHH
Confidence            3678888999998 8999988744 47789999999888 888887665  66 788888888763221   1111   1


Q ss_pred             CCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEc
Q 048829          628 LPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVY  707 (976)
Q Consensus       628 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  707 (976)
                      .+..|+.=  .-|..+.   .+++....   ..   .               .+...++..       ...-+.+.|+++
T Consensus       324 vLKyLrs~--~~~dglS---~se~~~e~---~~---t---------------~~~~~~~~~-------~~~i~tkiL~~s  370 (565)
T KOG0472|consen  324 VLKYLRSK--IKDDGLS---QSEGGTET---AM---T---------------LPSESFPDI-------YAIITTKILDVS  370 (565)
T ss_pred             HHHHHHHh--hccCCCC---CCcccccc---cC---C---------------CCCCcccch-------hhhhhhhhhccc
Confidence            11111110  0000000   00000000   00   0               000011100       111456777777


Q ss_pred             CCCcchhhhhhhcCC--CCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcc
Q 048829          708 GCPKLESIAERLDNN--TSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLE  785 (976)
Q Consensus       708 ~~~~~~~~~~~~~~l--~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~  785 (976)
                      +-+.+....+.|..-  .-....+++. +.+..+|..+..+..+.+.-+..+..+.-+|.....+++|..|++++|. +.
T Consensus       371 ~~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln  448 (565)
T KOG0472|consen  371 DKQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LN  448 (565)
T ss_pred             ccccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hh
Confidence            765544333333221  1266778888 5677788877777777666666665666666667778888888888877 88


Q ss_pred             cCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCC
Q 048829          786 ALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPE  865 (976)
Q Consensus       786 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~  865 (976)
                      .+|..++.+..|+.|+++.|+++.+|..                           +..+..|+.+-.++  +.++.++..
T Consensus       449 ~LP~e~~~lv~Lq~LnlS~NrFr~lP~~---------------------------~y~lq~lEtllas~--nqi~~vd~~  499 (565)
T KOG0472|consen  449 DLPEEMGSLVRLQTLNLSFNRFRMLPEC---------------------------LYELQTLETLLASN--NQIGSVDPS  499 (565)
T ss_pred             hcchhhhhhhhhheecccccccccchHH---------------------------HhhHHHHHHHHhcc--ccccccChH
Confidence            8888888888888888888888877642                           22333444444443  456666655


Q ss_pred             CcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCC
Q 048829          866 PEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPK  915 (976)
Q Consensus       866 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~  915 (976)
                      +        +..+.+|.+||+.+ +.+..+|+.++++++|++|++.++|.
T Consensus       500 ~--------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  500 G--------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             H--------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence            3        25777888888887 78888888899999999999998663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=4.1e-29  Score=274.72  Aligned_cols=264  Identities=21%  Similarity=0.290  Sum_probs=188.4

Q ss_pred             ccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCc-CCCCCCcEEEEccCCCCCCCCCccccCCCCccc
Q 048829          532 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEV-ALPSKLKKIEIRECDALKSLPEPWMCDTSSSLE  610 (976)
Q Consensus       532 ~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~  610 (976)
                      .|.+|+.+++++++ ...+|.++..+.+|+.+++.+ +.++.+|.. ....+|+.|.+..|. ++.+|....  .+.+|+
T Consensus       239 ~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le--~~~sL~  313 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNN-LSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLE--GLKSLR  313 (1081)
T ss_pred             ccccceeeecchhh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCccc--ccceee
Confidence            34678888888754 455667888888888888877 666766653 336778888888877 777776543  677788


Q ss_pred             EEEEecCCCCcccccccC---CCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccc
Q 048829          611 ILKIWDCHSLTYIAEVQL---PLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPA  687 (976)
Q Consensus       611 ~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  687 (976)
                      +|++..| .+..+|....   ..+|+.|..+.++ +...  |                       +      +       
T Consensus       314 tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~l--p-----------------------~------~-------  353 (1081)
T KOG0618|consen  314 TLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNK-LSTL--P-----------------------S------Y-------  353 (1081)
T ss_pred             eeeehhc-cccccchHHHhhhhHHHHHHhhhhcc-cccc--c-----------------------c------c-------
Confidence            8888775 3444443211   1123333333221 1111  0                       0      0       


Q ss_pred             ccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccc-cccCCCCCcEEEccCCCCCCccCCC
Q 048829          688 TLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSS-GLHNLCQLQQIGIGGCGNLESFPEG  766 (976)
Q Consensus       688 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~  766 (976)
                            -.+..+.|+.|.+.+|...+...+.+.++..|+.|++++ +.++++|+ .+.+++.|++|++++| .++.+|..
T Consensus       354 ------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~t  425 (1081)
T KOG0618|consen  354 ------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPDT  425 (1081)
T ss_pred             ------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhHH
Confidence                  011226799999999999999999999999999999999 56777754 5577999999999999 78889998


Q ss_pred             CCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCccc-CCCC-CccceeeecCCCCccchhhhcCCccccc
Q 048829          767 GLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE-DGLP-TNLHSLRIEGNMGIWKSMIERGRGFHRF  844 (976)
Q Consensus       767 ~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l  844 (976)
                      ...++.|++|...+|. +..+| .+..++.|+.+|++.|+++.+.. ...+ ++|++||++||......-    ..+..+
T Consensus       426 va~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~----~~l~~l  499 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDH----KTLKVL  499 (1081)
T ss_pred             HHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccch----hhhHHh
Confidence            8999999999999988 77888 88899999999999999987643 3455 899999999998644332    335555


Q ss_pred             CcccEEEEec
Q 048829          845 SSLRYLLIRG  854 (976)
Q Consensus       845 ~~L~~L~l~~  854 (976)
                      .++...++.-
T Consensus       500 ~~l~~~~i~~  509 (1081)
T KOG0618|consen  500 KSLSQMDITL  509 (1081)
T ss_pred             hhhhheeccc
Confidence            5555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=5.9e-30  Score=254.84  Aligned_cols=233  Identities=23%  Similarity=0.306  Sum_probs=137.0

Q ss_pred             ccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccc
Q 048829          113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI  192 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~  192 (976)
                      .+.+++-++..|.||++++|.+.++|.+++.+..++.|+.++|++.++|+.++.+..|+.|+.++ +.+.++|.+|+.+.
T Consensus        59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~  137 (565)
T KOG0472|consen   59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLL  137 (565)
T ss_pred             hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHh
Confidence            34445556666777777777777777777777777777777777777777777777777777777 46677777777777


Q ss_pred             cCceeecCCCCCccccccccCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhccCCCCCC
Q 048829          193 KLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNL  272 (976)
Q Consensus       193 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L  272 (976)
                      .|+.|+..+|+ +..+|.+++.+.+|..|..-...                                            +
T Consensus       138 ~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~--------------------------------------------l  172 (565)
T KOG0472|consen  138 DLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK--------------------------------------------L  172 (565)
T ss_pred             hhhhhhccccc-cccCchHHHHHHHHHHhhccccc--------------------------------------------h
Confidence            77777777666 67777666666655544211100                                            0


Q ss_pred             ceEEEEEccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCCCCCCCCC
Q 048829          273 KELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQL  352 (976)
Q Consensus       273 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l  352 (976)
                      +.                      ..+....+..|++|+...+..+.+|..++.  +.+|..|++..|+ ...+|.|+++
T Consensus       173 ~~----------------------l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nk-i~~lPef~gc  227 (565)
T KOG0472|consen  173 KA----------------------LPENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNK-IRFLPEFPGC  227 (565)
T ss_pred             hh----------------------CCHHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhcc-cccCCCCCcc
Confidence            00                      000111134455555555556666666665  6777777777766 3456677777


Q ss_pred             CCCceEEEeCCCCceeeCccccCCCCCCCCCCcceeecccccccccccccCCCCCccCCcccceeecccCcccccCCC
Q 048829          353 PSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFP  430 (976)
Q Consensus       353 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp  430 (976)
                      ..|++|.++.| .++.+..+....     ++++..|++.+..      ..+.|+++.-+.+|++|+++++ .++ .+|
T Consensus       228 s~L~Elh~g~N-~i~~lpae~~~~-----L~~l~vLDLRdNk------lke~Pde~clLrsL~rLDlSNN-~is-~Lp  291 (565)
T KOG0472|consen  228 SLLKELHVGEN-QIEMLPAEHLKH-----LNSLLVLDLRDNK------LKEVPDEICLLRSLERLDLSNN-DIS-SLP  291 (565)
T ss_pred             HHHHHHHhccc-HHHhhHHHHhcc-----cccceeeeccccc------cccCchHHHHhhhhhhhcccCC-ccc-cCC
Confidence            77777777543 444444333222     4555555555432      1122333455566666666666 454 455

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=1e-26  Score=242.32  Aligned_cols=363  Identities=18%  Similarity=0.213  Sum_probs=230.4

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCC-CCCcEEEEccCCCCCCCCCccccCCCCcccEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALP-SKLKKIEIRECDALKSLPEPWMCDTSSSLEIL  612 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L  612 (976)
                      +.-+.|++++|......+..|.++++|+++++.. |.++.+|..+.. .+|+.|++.+|. +.++..... ..++.|+.|
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alrsl  154 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALRSL  154 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhhhh
Confidence            3444555555544444444555555555555555 555555554332 335555555554 444433322 345555555


Q ss_pred             EEecCCCCcccccccCC--CCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccc
Q 048829          613 KIWDCHSLTYIAEVQLP--LSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLE  690 (976)
Q Consensus       613 ~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  690 (976)
                      +++.| .+..++...++  .++++|++++|. ++.+  ..+.+.      .+.+|..|.++....- . ++..       
T Consensus       155 DLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l--~~~~F~------~lnsL~tlkLsrNrit-t-Lp~r-------  215 (873)
T KOG4194|consen  155 DLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTL--ETGHFD------SLNSLLTLKLSRNRIT-T-LPQR-------  215 (873)
T ss_pred             hhhhc-hhhcccCCCCCCCCCceEEeecccc-cccc--cccccc------ccchheeeecccCccc-c-cCHH-------
Confidence            55553 33334333222  245555555553 1211  110000      0012333333322110 0 1111       


Q ss_pred             cccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCC
Q 048829          691 SLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLP  769 (976)
Q Consensus       691 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~  769 (976)
                        .+.++ +.|+.|+|..|.+-..-.-.|+++++|+.|.+..|+..+---..|..+.++++|+++.| .+..+.. +...
T Consensus       216 --~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfg  291 (873)
T KOG4194|consen  216 --SFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFG  291 (873)
T ss_pred             --Hhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccc
Confidence              11122 67888888888776665667888888888888886544333566777889999999988 4554544 4567


Q ss_pred             CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC--CCccceeeecCCCCccchhhhcCCcccccCcc
Q 048829          770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL--PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSL  847 (976)
Q Consensus       770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  847 (976)
                      +.+|+.|++++|.+...-+.++...++|++|++++|+|+.+++..+  ++.|++|.+++|.+....-    ..|..+.+|
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----~af~~lssL  367 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----GAFVGLSSL  367 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh----hHHHHhhhh
Confidence            8899999999998666667788888999999999999999887755  6889999999998876655    678899999


Q ss_pred             cEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCC-c
Q 048829          848 RYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGL-P  925 (976)
Q Consensus       848 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~-~  925 (976)
                      ++||+++  +.+....++.     ..+|..+++|+.|++.+ |+++.||. ++..+++|++|++.+ +-+.+|-+..| |
T Consensus       368 ~~LdLr~--N~ls~~IEDa-----a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  368 HKLDLRS--NELSWCIEDA-----AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEP  438 (873)
T ss_pred             hhhcCcC--CeEEEEEecc-----hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeeccccccc
Confidence            9999998  3443333332     45678899999999999 89999998 888899999999998 55777766666 4


Q ss_pred             ccccceeecC
Q 048829          926 SSLLQLRIYR  935 (976)
Q Consensus       926 ~~L~~L~i~~  935 (976)
                      -.|++|-+..
T Consensus       439 m~Lk~Lv~nS  448 (873)
T KOG4194|consen  439 MELKELVMNS  448 (873)
T ss_pred             chhhhhhhcc
Confidence            5788876543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=4.7e-26  Score=237.50  Aligned_cols=360  Identities=18%  Similarity=0.246  Sum_probs=247.4

Q ss_pred             CceEEeccCC-CCCcccccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCC
Q 048829          480 QNSVVCRDTS-NQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLS  558 (976)
Q Consensus       480 L~~L~~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~  558 (976)
                      .+.|.+.++. ...-...|..+++|+++++.+ +.++.++..+         ....+|+.|+|.+|.+.+.-.+.+..++
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~---------~~sghl~~L~L~~N~I~sv~se~L~~l~  149 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFG---------HESGHLEKLDLRHNLISSVTSEELSALP  149 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhccccc---------ccccceeEEeeeccccccccHHHHHhHh
Confidence            3445555554 333334455666666666665 2344433321         1114566666666655555555555666


Q ss_pred             CccEEEeecCCCCCCCCCcCCC--CCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc--cCCCCCcE
Q 048829          559 SLKEIEIYKCSSLVSFPEVALP--SKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKR  634 (976)
Q Consensus       559 ~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~  634 (976)
                      .|+.||++. |.+..++...++  .++++|++++|. ++.+....| .++.+|..|.++.| .++.+|..  ..++.|+.
T Consensus       150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES  225 (873)
T ss_pred             hhhhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccC-cccccCHHHhhhcchhhh
Confidence            666666666 566665554442  456666666666 566655555 55556666666664 34444433  22445566


Q ss_pred             EeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchh
Q 048829          635 LDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLES  714 (976)
Q Consensus       635 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  714 (976)
                      |++.+|.. ..                                           .+.+.+..+ ++|+.|.+..|.+...
T Consensus       226 LdLnrN~i-ri-------------------------------------------ve~ltFqgL-~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  226 LDLNRNRI-RI-------------------------------------------VEGLTFQGL-PSLQNLKLQRNDISKL  260 (873)
T ss_pred             hhccccce-ee-------------------------------------------ehhhhhcCc-hhhhhhhhhhcCcccc
Confidence            66655531 00                                           011112222 7899999999999888


Q ss_pred             hhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCC
Q 048829          715 IAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHN  793 (976)
Q Consensus       715 ~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~  793 (976)
                      --.+|..+.++++|+++.| .+..+ ..++.++++|+.|++++|..-..-++.+.-+++|++|++++|.....-+..+.-
T Consensus       261 ~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~  339 (873)
T KOG4194|consen  261 DDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV  339 (873)
T ss_pred             cCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence            8889999999999999995 45554 678889999999999999544444566677899999999999944444457899


Q ss_pred             CCccceEEEeCCCCCCcccCCC--CCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCccccc
Q 048829          794 LTSLQQLTIIGGELPSLEEDGL--PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRL  871 (976)
Q Consensus       794 l~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~  871 (976)
                      +..|++|.+++|.|..+.+..+  .++|++||+++|.+...+-. ....|.++++|+.|++-+  +.+.++|...     
T Consensus       340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~g--Nqlk~I~krA-----  411 (873)
T KOG4194|consen  340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTG--NQLKSIPKRA-----  411 (873)
T ss_pred             HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecC--ceeeecchhh-----
Confidence            9999999999999999987654  79999999999998765432 124588899999999999  6888888754     


Q ss_pred             CCCCCCccccceeeccccCCCccc-cccccCCCCCCeEeecC
Q 048829          872 GTTLPLPASLTSLSIAFFPNLESL-SSSIVDLQNLTKLTLYD  912 (976)
Q Consensus       872 ~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~  912 (976)
                         |..+++|++|+|.+ |-+.+| |.+|..+ .|+.|.+..
T Consensus       412 ---fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  412 ---FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ---hccCcccceecCCC-Ccceeecccccccc-hhhhhhhcc
Confidence               68999999999999 566666 4477777 899998764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.91  E-value=1.6e-26  Score=254.46  Aligned_cols=105  Identities=33%  Similarity=0.429  Sum_probs=81.6

Q ss_pred             ccccc-cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhcccc
Q 048829          115 LPKLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK  193 (976)
Q Consensus       115 ~~~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~  193 (976)
                      |-++. +.-+|++||+++|.+...|..+..+.+|+.|+++.|.|...|.+++++.+|++|.|.+ +.+..+|.++..+++
T Consensus        37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lkn  115 (1081)
T KOG0618|consen   37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKN  115 (1081)
T ss_pred             chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhc
Confidence            34444 4555888888888888888888888888888888888888888888888888888887 688888888888888


Q ss_pred             CceeecCCCCCccccccccCCCCCCcee
Q 048829          194 LHHLNNSNTDSLEETPLGIGKLTCLQTL  221 (976)
Q Consensus       194 L~~L~l~~~~~~~~lp~~i~~L~~L~~L  221 (976)
                      |++|++++|. ...+|.-+..++.+..+
T Consensus       116 l~~LdlS~N~-f~~~Pl~i~~lt~~~~~  142 (1081)
T KOG0618|consen  116 LQYLDLSFNH-FGPIPLVIEVLTAEEEL  142 (1081)
T ss_pred             ccccccchhc-cCCCchhHHhhhHHHHH
Confidence            8888888887 77777666555544433

>PLN03210 Resistant to P

Probab=99.91  E-value=3e-23  Score=258.73  Aligned_cols=313  Identities=24%  Similarity=0.323  Sum_probs=163.6

Q ss_pred             cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829          533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI  611 (976)
Q Consensus       533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~  611 (976)
                      +++|+.|.+.+++ ++.+|..+ .+.+|++|++.+ +.+..++. ...+++|+.|++++|..++.+|..   ..+++|+.
T Consensus       588 p~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~  661 (1153)
T PLN03210        588 PPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLET  661 (1153)
T ss_pred             CcccEEEEecCCC-CCCCCCcC-CccCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccE
Confidence            3456666665543 34444443 345566666655 34444443 223555666666655555555532   24555666


Q ss_pred             EEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccc
Q 048829          612 LKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLE  690 (976)
Q Consensus       612 L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  690 (976)
                      |++++|..+..+|.. ..+.+|+.|++++|..++.+  |.+. .       .++|+.|.+++|.                
T Consensus       662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L--p~~i-~-------l~sL~~L~Lsgc~----------------  715 (1153)
T PLN03210        662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL--PTGI-N-------LKSLYRLNLSGCS----------------  715 (1153)
T ss_pred             EEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc--CCcC-C-------CCCCCEEeCCCCC----------------
Confidence            666666555555543 34455555566555555554  3322 1       1345555555554                


Q ss_pred             cccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCC------ccC
Q 048829          691 SLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLE------SFP  764 (976)
Q Consensus       691 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~------~~~  764 (976)
                                          .++.+|..   .++|++|++++| .++.+|..+ .+++|++|.+.++....      .++
T Consensus       716 --------------------~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        716 --------------------RLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             --------------------Cccccccc---cCCcCeeecCCC-ccccccccc-cccccccccccccchhhccccccccc
Confidence                                44333322   234444555443 233444333 24445555444432100      000


Q ss_pred             -CCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeC-CCCCCcccCCCCCccceeeecCCCCccchhhhcCCccc
Q 048829          765 -EGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFH  842 (976)
Q Consensus       765 -~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  842 (976)
                       .....+++|+.|++++|+.+..+|..++++++|+.|++++ +.+..+|....+++|+.|++++|......+       .
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p-------~  843 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP-------D  843 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc-------c
Confidence             0111134555555555555555555555555555555555 345555544445566666666665544332       1


Q ss_pred             ccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccC
Q 048829          843 RFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFP  920 (976)
Q Consensus       843 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~  920 (976)
                      ..++|+.|++++  +.++.+|...         ..+++|+.|++++|++++.+|..+..+++|+.+++++|++++.++
T Consensus       844 ~~~nL~~L~Ls~--n~i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        844 ISTNISDLNLSR--TGIEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             cccccCEeECCC--CCCccChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence            235667777766  3556666554         366777777777777777777766777777777777777776554

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=3.9e-25  Score=231.88  Aligned_cols=330  Identities=19%  Similarity=0.277  Sum_probs=220.1

Q ss_pred             cccccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcc-cCccccCCCCCccEEEeecCCCC
Q 048829          493 HDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLV-KLPQSSLSLSSLKEIEIYKCSSL  571 (976)
Q Consensus       493 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l  571 (976)
                      ....+..+.+|++|.+.++ .+.++..     .+..+    |.|+.+.+++|+.-. .+|..+..+..|..|++++ +++
T Consensus        47 vPeEL~~lqkLEHLs~~HN-~L~~vhG-----ELs~L----p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL  115 (1255)
T KOG0444|consen   47 VPEELSRLQKLEHLSMAHN-QLISVHG-----ELSDL----PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQL  115 (1255)
T ss_pred             ChHHHHHHhhhhhhhhhhh-hhHhhhh-----hhccc----hhhHHHhhhccccccCCCCchhcccccceeeecch-hhh
Confidence            3344566777777777764 3333222     12233    677777777766543 4777777888888888888 777


Q ss_pred             CCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccc
Q 048829          572 VSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVE  649 (976)
Q Consensus       572 ~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~  649 (976)
                      +..|. .....++-+|++++|. +..||...+ .+++.|-.|++++| .+..+|+- ..+..|++|++++|+..      
T Consensus       116 ~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~------  186 (1255)
T KOG0444|consen  116 REVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN------  186 (1255)
T ss_pred             hhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh------
Confidence            77775 4456777788888887 788887766 67777778888875 44544433 55566777777777421      


Q ss_pred             cccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCc-chhhhhhhcCCCCCceE
Q 048829          650 EGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPK-LESIAERLDNNTSLETI  728 (976)
Q Consensus       650 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~L~~L  728 (976)
                                       ...+..            +|+.          .+|+.|++++.+. +..+|..+..+.+|..+
T Consensus       187 -----------------hfQLrQ------------LPsm----------tsL~vLhms~TqRTl~N~Ptsld~l~NL~dv  227 (1255)
T KOG0444|consen  187 -----------------HFQLRQ------------LPSM----------TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV  227 (1255)
T ss_pred             -----------------HHHHhc------------Cccc----------hhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence                             111111            1111          5677777776543 35677777788888888


Q ss_pred             EeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829          729 NISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELP  808 (976)
Q Consensus       729 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~  808 (976)
                      |++. +.+..+|..+..+++|+.|++++| .++.+........+|++|+++.|+ +..+|..+..++.|+.|++.+|.+.
T Consensus       228 DlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  228 DLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             cccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCccc
Confidence            8886 567777888888888888888887 566665555556678888888877 7778888888888888877776665


Q ss_pred             CcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccc
Q 048829          809 SLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAF  888 (976)
Q Consensus       809 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  888 (976)
                      .                      ...+   +.++.+.+|+.+..++  +.++-+|+..         .-+..|+.|.+++
T Consensus       305 F----------------------eGiP---SGIGKL~~Levf~aan--N~LElVPEgl---------cRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  305 F----------------------EGIP---SGIGKLIQLEVFHAAN--NKLELVPEGL---------CRCVKLQKLKLDH  348 (1255)
T ss_pred             c----------------------cCCc---cchhhhhhhHHHHhhc--cccccCchhh---------hhhHHHHHhcccc
Confidence            3                      1111   4566666777766665  5666666665         4667777777776


Q ss_pred             cCCCccccccccCCCCCCeEeecCCCCccccCC
Q 048829          889 FPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPE  921 (976)
Q Consensus       889 ~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~  921 (976)
                       |.+..+|.++.-++.|+.|++++++.+-.-|+
T Consensus       349 -NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  349 -NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             -cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence             67777777777777777777777776665554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=3.5e-24  Score=224.79  Aligned_cols=354  Identities=19%  Similarity=0.254  Sum_probs=247.3

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCC-CcCCCCCCcEEEEccCCC-CCCCCCccccCCCCcccE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFP-EVALPSKLKKIEIRECDA-LKSLPEPWMCDTSSSLEI  611 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~l~~L~~  611 (976)
                      ++++.|.|.. ..+..+|..++.+.+|++|.+++ +++.++. ....+|.|+.+.+.+|.. -..+|..+|  .+..|..
T Consensus        32 t~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF--~l~dLt~  107 (1255)
T KOG0444|consen   32 TQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF--RLKDLTI  107 (1255)
T ss_pred             hheeEEEech-hhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHHHhhhccccccCCCCchhc--cccccee
Confidence            4555555544 34455666667777777777777 4444433 345567777777776652 223666666  6777777


Q ss_pred             EEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccc
Q 048829          612 LKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLE  690 (976)
Q Consensus       612 L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  690 (976)
                      |++++| .++..|.. ....++-.|++++|. +.++  |..+.                    -++              
T Consensus       108 lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetI--Pn~lf--------------------inL--------------  149 (1255)
T KOG0444|consen  108 LDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETI--PNSLF--------------------INL--------------  149 (1255)
T ss_pred             eecchh-hhhhcchhhhhhcCcEEEEcccCc-cccC--CchHH--------------------Hhh--------------
Confidence            777775 45555544 555667777777763 3444  32211                    111              


Q ss_pred             cccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCC-CCccCCCCCC
Q 048829          691 SLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGN-LESFPEGGLP  769 (976)
Q Consensus       691 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~  769 (976)
                              .-|-.||||+|. ++.+|+.+..+..|++|++++|+....--.-+.++++|++|++++.+. +..+|..+-.
T Consensus       150 --------tDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~  220 (1255)
T KOG0444|consen  150 --------TDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD  220 (1255)
T ss_pred             --------HhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence                    346677777764 466777788888888888888764332112223357778888877543 3457777777


Q ss_pred             CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCccc-CCCCCccceeeecCCCCccchhhhcCCcccccCccc
Q 048829          770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR  848 (976)
Q Consensus       770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  848 (976)
                      +.+|..+|++.|. +..+|+.+.++++|+.|++++|.|+.+.. .+...+|+.|++++|.++..+     ..+..+++|+
T Consensus       221 l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP-----~avcKL~kL~  294 (1255)
T KOG0444|consen  221 LHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP-----DAVCKLTKLT  294 (1255)
T ss_pred             hhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch-----HHHhhhHHHH
Confidence            7888888888776 77788888888888888888888887764 355678888888888876543     4678999999


Q ss_pred             EEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCC-CCccc
Q 048829          849 YLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK-GLPSS  927 (976)
Q Consensus       849 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~  927 (976)
                      .|.+.++.-..+.+|++++         .+.+|+.+..++ |.++-+|.++..+..|+.|.+++ +.+-.+|+. .+.+.
T Consensus       295 kLy~n~NkL~FeGiPSGIG---------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~  363 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIG---------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPD  363 (1255)
T ss_pred             HHHhccCcccccCCccchh---------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCC
Confidence            9999985556778999884         899999999999 89999999999999999999987 666777774 56789


Q ss_pred             ccceeecCCcchHH----HHhccCCcccccccc
Q 048829          928 LLQLRIYRCPLIEE----KCRKDGGQYWDLLTH  956 (976)
Q Consensus       928 L~~L~i~~c~~l~~----~~~~~~~~~~~~i~~  956 (976)
                      |+.||+..+|+|.-    .-++ ...+|+.|.+
T Consensus       364 l~vLDlreNpnLVMPPKP~da~-~~lefYNIDF  395 (1255)
T KOG0444|consen  364 LKVLDLRENPNLVMPPKPNDAR-KKLEFYNIDF  395 (1255)
T ss_pred             cceeeccCCcCccCCCCcchhh-hcceeeecce
Confidence            99999999998621    1111 2347887765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.66  E-value=9e-16  Score=176.83  Aligned_cols=214  Identities=28%  Similarity=0.372  Sum_probs=115.2

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      ..-..|+++++. ++.+|..+.  ++|+.|++.+ ++++.+|.  .+++|++|++++|. ++.+|.     ..++|+.|+
T Consensus       201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~-----lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccC-CcCCCCCC--CCCCCcEEEecCCc-cCcccC-----cccccceee
Confidence            446678888874 446776554  4788888887 67777774  36778888888875 666664     245677777


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE  693 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  693 (976)
                      +++|. +..++.  .+.+|+.|++++|. ++.+  |.                                           
T Consensus       269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~N~-Lt~L--P~-------------------------------------------  299 (788)
T PRK15387        269 IFSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSL--PV-------------------------------------------  299 (788)
T ss_pred             ccCCc-hhhhhh--chhhcCEEECcCCc-cccc--cc-------------------------------------------
Confidence            77653 444442  33456666665552 2222  10                                           


Q ss_pred             ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829          694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL  773 (976)
Q Consensus       694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L  773 (976)
                         .|++|+.|++++|.+.+ +|..   ..+|+.|++++| .++.+|..   ..+|++|++++| .++.+|..   .++|
T Consensus       300 ---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L  364 (788)
T PRK15387        300 ---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDN-QLASLPTL---PSEL  364 (788)
T ss_pred             ---cccccceeECCCCcccc-CCCC---cccccccccccC-cccccccc---ccccceEecCCC-ccCCCCCC---Cccc
Confidence               12456666666665443 2321   124555666653 33444431   135666666665 44445532   1355


Q ss_pred             cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCC
Q 048829          774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMG  829 (976)
Q Consensus       774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~  829 (976)
                      +.|++++|. +..+|..   ..+|+.|++++|.|..+|.  .+++|+.|++++|.+
T Consensus       365 ~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~--l~s~L~~LdLS~N~L  414 (788)
T PRK15387        365 YKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPV--LPSELKELMVSGNRL  414 (788)
T ss_pred             ceehhhccc-cccCccc---ccccceEEecCCcccCCCC--cccCCCEEEccCCcC
Confidence            555665554 3344432   2345555555555554442  123444444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.64  E-value=1.6e-15  Score=174.74  Aligned_cols=254  Identities=27%  Similarity=0.373  Sum_probs=132.3

Q ss_pred             ccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEeecc
Q 048829          560 LKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQR  639 (976)
Q Consensus       560 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~  639 (976)
                      -..|++++ +.++.+|. ..+++|+.|.+.+|. ++.+|.     ..++|++|++++| .++.+|.  .+.+|+.|++++
T Consensus       203 ~~~LdLs~-~~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGE-SGLTTLPD-CLPAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCC-CCCCcCCc-chhcCCCEEEccCCc-CCCCCC-----CCCCCcEEEecCC-ccCcccC--cccccceeeccC
Confidence            44556666 35555554 223456666666655 555553     2456666666664 4444442  234556666655


Q ss_pred             CcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhh
Q 048829          640 CNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERL  719 (976)
Q Consensus       640 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  719 (976)
                      |. ++.+  |.                                              +|.+|+.|++++|.+. .+|.  
T Consensus       272 N~-L~~L--p~----------------------------------------------lp~~L~~L~Ls~N~Lt-~LP~--  299 (788)
T PRK15387        272 NP-LTHL--PA----------------------------------------------LPSGLCKLWIFGNQLT-SLPV--  299 (788)
T ss_pred             Cc-hhhh--hh----------------------------------------------chhhcCEEECcCCccc-cccc--
Confidence            53 2222  10                                              1134555666665443 2332  


Q ss_pred             cCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccce
Q 048829          720 DNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQ  799 (976)
Q Consensus       720 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~  799 (976)
                       ..++|+.|++++| .++.+|..   ..+|+.|++++| .++.+|..   .++|+.|++++|. ++.+|..   .++|+.
T Consensus       300 -~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~  366 (788)
T PRK15387        300 -LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYK  366 (788)
T ss_pred             -cccccceeECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---Ccccce
Confidence             2345666666664 44444432   234556666665 44445531   1356666666655 4445532   245556


Q ss_pred             EEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCcc
Q 048829          800 LTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPA  879 (976)
Q Consensus       800 L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~  879 (976)
                      |++++|.|..+|.  .+.+|+.|++++|.+.....        ..++|+.|++++  +.+..+|.            .+.
T Consensus       367 L~Ls~N~L~~LP~--l~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~--N~LssIP~------------l~~  422 (788)
T PRK15387        367 LWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLPV--------LPSELKELMVSG--NRLTSLPM------------LPS  422 (788)
T ss_pred             ehhhccccccCcc--cccccceEEecCCcccCCCC--------cccCCCEEEccC--CcCCCCCc------------chh
Confidence            6666666665553  23556666666665543211        124566666666  23444543            124


Q ss_pred             ccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829          880 SLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       880 ~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~  914 (976)
                      +|+.|++++ |.++.||..+..+++|+.|++++|+
T Consensus       423 ~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence            556666666 5566666666666666666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.60  E-value=6.5e-17  Score=162.34  Aligned_cols=96  Identities=27%  Similarity=0.372  Sum_probs=47.2

Q ss_pred             EEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-hhccccCceeecCCCC
Q 048829          127 FSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNTD  203 (976)
Q Consensus       127 L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~  203 (976)
                      ++|..|+|+.| |.+|+.+++||.||||+|+|+.| |.+|..|..|-.|-+.++++|+.+|.+ |++|..|+.|.+.-|.
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            34445555555 33445555555555555555544 445555555555544444455555544 4555555555554444


Q ss_pred             Cccccccc-cCCCCCCceecc
Q 048829          204 SLEETPLG-IGKLTCLQTLCN  223 (976)
Q Consensus       204 ~~~~lp~~-i~~L~~L~~L~~  223 (976)
                       +..++.+ +..|++|..|.+
T Consensus       152 -i~Cir~~al~dL~~l~lLsl  171 (498)
T KOG4237|consen  152 -INCIRQDALRDLPSLSLLSL  171 (498)
T ss_pred             -hcchhHHHHHHhhhcchhcc
Confidence             4444433 444444444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.56  E-value=1e-16  Score=160.89  Aligned_cols=115  Identities=29%  Similarity=0.374  Sum_probs=102.1

Q ss_pred             ccccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCC-CCccccch-hhhccCCccEEecccccchhccch
Q 048829          111 APSILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSG-TNIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCA  186 (976)
Q Consensus       111 ~~~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~-n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~  186 (976)
                      ...+|+..| .+++||+||||.|+|+.| |.+|.+|+.|-.|-+.+ |+|+.+|. .|++|..|+.|.+.- +.+..++.
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~  157 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQ  157 (498)
T ss_pred             cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhH
Confidence            578999999 999999999999999999 99999999998888877 89999986 589999999999988 57777765


Q ss_pred             h-hhccccCceeecCCCCCccccccc-cCCCCCCceecceEec
Q 048829          187 D-MGNLIKLHHLNNSNTDSLEETPLG-IGKLTCLQTLCNFVVG  227 (976)
Q Consensus       187 ~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~  227 (976)
                      + |..|++|..|.+..|. +..++.+ +..+..++++......
T Consensus       158 ~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  158 DALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence            5 9999999999999998 9999985 9999999998655444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.52  E-value=3.9e-14  Score=164.79  Aligned_cols=203  Identities=23%  Similarity=0.394  Sum_probs=107.3

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEee
Q 048829          558 SSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDI  637 (976)
Q Consensus       558 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l  637 (976)
                      .+...|++++ ..++.+|.. .++.|+.|++++|. ++.+|...+    ++|+.|++++|. ++.+|.. .+.+|+.|++
T Consensus       178 ~~~~~L~L~~-~~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~l~----~nL~~L~Ls~N~-LtsLP~~-l~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKI-LGLTTIPAC-IPEQITTLILDNNE-LKSLPENLQ----GNIKTLYANSNQ-LTSIPAT-LPDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCC-CCcCcCCcc-cccCCcEEEecCCC-CCcCChhhc----cCCCEEECCCCc-cccCChh-hhccccEEEC
Confidence            3567788888 577777752 35688888888886 777776433    467777777653 4444432 2334555555


Q ss_pred             ccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhh
Q 048829          638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAE  717 (976)
Q Consensus       638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  717 (976)
                      ++|. +..+  |..                                             ++.+|+.|++++|++. .+|.
T Consensus       249 s~N~-L~~L--P~~---------------------------------------------l~s~L~~L~Ls~N~L~-~LP~  279 (754)
T PRK15370        249 SINR-ITEL--PER---------------------------------------------LPSALQSLDLFHNKIS-CLPE  279 (754)
T ss_pred             cCCc-cCcC--Chh---------------------------------------------HhCCCCEEECcCCccC-cccc
Confidence            5553 1122  110                                             1134556666555443 3444


Q ss_pred             hhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCcc
Q 048829          718 RLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSL  797 (976)
Q Consensus       718 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L  797 (976)
                      .+.  ++|+.|++++| .++.+|..+.  ++|+.|++++| .+..+|....  ++|+.|++++|. +..+|..+.  ++|
T Consensus       280 ~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l~--~sL  348 (754)
T PRK15370        280 NLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENA-LTSLPASLP--PEL  348 (754)
T ss_pred             ccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCc-cccCChhhc--Ccc
Confidence            332  35666666664 3444444332  35556666655 3344443222  356666666554 344554332  455


Q ss_pred             ceEEEeCCCCCCcccCCCCCccceeeecCCCCc
Q 048829          798 QQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGI  830 (976)
Q Consensus       798 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~  830 (976)
                      +.|++++|.+..+|. .++++|+.|++++|.+.
T Consensus       349 ~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt  380 (754)
T PRK15370        349 QVLDVSKNQITVLPE-TLPPTITTLDVSRNALT  380 (754)
T ss_pred             cEEECCCCCCCcCCh-hhcCCcCEEECCCCcCC
Confidence            555555555554442 23345555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.51  E-value=3.3e-14  Score=168.00  Aligned_cols=150  Identities=27%  Similarity=0.286  Sum_probs=111.5

Q ss_pred             ccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCc--cccccc-cccCCCcccEEecCCCC-ccccc
Q 048829           86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYH--ISELPD-SVGDLRYLRYLNLSGTN-IRTLP  161 (976)
Q Consensus        86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~--i~~lp~-~~~~L~~L~~L~L~~n~-i~~lp  161 (976)
                      +........|...+..+..        .....-...+.|++|-+.+|.  +..++. .|..++.||+|||++|. +.++|
T Consensus       517 ~~~~~~~~~rr~s~~~~~~--------~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP  588 (889)
T KOG4658|consen  517 PQVKSWNSVRRMSLMNNKI--------EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP  588 (889)
T ss_pred             ccccchhheeEEEEeccch--------hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence            3344556677776655432        222223345579999999996  667754 47889999999999874 77999


Q ss_pred             hhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCceecceEec-CCCCCCchhhhcc
Q 048829          162 ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVG-KDSGSGLSELKLL  240 (976)
Q Consensus       162 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~-~~~~~~~~~L~~L  240 (976)
                      ++|++|.+||+|++++ ..+..+|.++++|++|.+|++..+.....+|..+..|.+||+|.++... ..+...+.++.+|
T Consensus       589 ~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L  667 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL  667 (889)
T ss_pred             hHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence            9999999999999999 6899999999999999999999998667776667779999999776654 2223344444444


Q ss_pred             cccc
Q 048829          241 MHLR  244 (976)
Q Consensus       241 ~~L~  244 (976)
                      ..|+
T Consensus       668 e~L~  671 (889)
T KOG4658|consen  668 EHLE  671 (889)
T ss_pred             cchh
Confidence            4443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=9.4e-14  Score=161.64  Aligned_cols=247  Identities=21%  Similarity=0.308  Sum_probs=181.2

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      .+...|+++++. ++.+|..+  .++|+.|++++ +.++.+|.. .+++|++|++++|. ++.+|...    .++|+.|+
T Consensus       178 ~~~~~L~L~~~~-LtsLP~~I--p~~L~~L~Ls~-N~LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~~l----~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILG-LTTIPACI--PEQITTLILDN-NELKSLPEN-LQGNIKTLYANSNQ-LTSIPATL----PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCC-cCcCCccc--ccCCcEEEecC-CCCCcCChh-hccCCCEEECCCCc-cccCChhh----hccccEEE
Confidence            578899999864 55677655  35899999998 688888863 34799999999997 88888743    35799999


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE  693 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  693 (976)
                      +++|. +..+|.. .+.+|+.|++++| .++.+  |..                                          
T Consensus       248 Ls~N~-L~~LP~~-l~s~L~~L~Ls~N-~L~~L--P~~------------------------------------------  280 (754)
T PRK15370        248 LSINR-ITELPER-LPSALQSLDLFHN-KISCL--PEN------------------------------------------  280 (754)
T ss_pred             CcCCc-cCcCChh-HhCCCCEEECcCC-ccCcc--ccc------------------------------------------
Confidence            99985 4466543 3467999999876 34433  221                                          


Q ss_pred             ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829          694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL  773 (976)
Q Consensus       694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L  773 (976)
                         ++++|+.|++++|.+.. +|..+.  ++|+.|++++| .+..+|..+  .++|++|++++| .++.+|..+.  ++|
T Consensus       281 ---l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~l~--~sL  348 (754)
T PRK15370        281 ---LPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSN-SLTALPETL--PPGLKTLEAGEN-ALTSLPASLP--PEL  348 (754)
T ss_pred             ---cCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCC-ccccCCccc--cccceeccccCC-ccccCChhhc--Ccc
Confidence               12568888888886553 444332  47999999995 555677554  379999999999 5677886543  699


Q ss_pred             cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829          774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR  853 (976)
Q Consensus       774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  853 (976)
                      +.|++++|. +..+|..+  .++|+.|++++|.+..+|.. ++..|+.|++++|.+... +...+.....++++..|++.
T Consensus       349 ~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~-l~~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~  423 (754)
T PRK15370        349 QVLDVSKNQ-ITVLPETL--PPTITTLDVSRNALTNLPEN-LPAALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVE  423 (754)
T ss_pred             cEEECCCCC-CCcCChhh--cCCcCEEECCCCcCCCCCHh-HHHHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEee
Confidence            999999997 66788755  36899999999999988753 556899999999987643 21111234456788888888


Q ss_pred             c
Q 048829          854 G  854 (976)
Q Consensus       854 ~  854 (976)
                      +
T Consensus       424 ~  424 (754)
T PRK15370        424 Y  424 (754)
T ss_pred             C
Confidence            8

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=9.3e-16  Score=135.76  Aligned_cols=128  Identities=27%  Similarity=0.374  Sum_probs=79.9

Q ss_pred             ccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhh
Q 048829           86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVN  165 (976)
Q Consensus        86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~  165 (976)
                      +.+..+++...|.+.++.       ...+||.+..+++|++|++++|+|.++|.+++.++.||.|+++-|.+..+|..||
T Consensus        27 ~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             ccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence            333444455555444332       3456666666666666666666666666666666666666666666666666666


Q ss_pred             ccCCccEEecccccch-hccchhhhccccCceeecCCCCCccccccccCCCCCCcee
Q 048829          166 KLYNLHSLLLEDCDRL-KKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL  221 (976)
Q Consensus       166 ~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  221 (976)
                      .++-|++|||++|+.- ..+|..|-.|+.|+-|+++.|. ...+|.++++|++||.|
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL  155 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence            6666666666663221 2356666666666666666666 66666666666666665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.45  E-value=2.9e-15  Score=132.64  Aligned_cols=145  Identities=23%  Similarity=0.328  Sum_probs=101.2

Q ss_pred             ceeEEEeecccccCCcccccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcc
Q 048829           68 YLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYL  147 (976)
Q Consensus        68 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L  147 (976)
                      .+.++.+..+...  ...+.+.++++|.+|-+.++.       ..++|.++..+++||.|+++-|++..+|..||.++.|
T Consensus        34 ~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   34 NITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             hhhhhhcccCcee--ecCCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            3445555443321  223455566777777655443       4566777777777888877777777777777777888


Q ss_pred             cEEecCCCCcc--ccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCceecc
Q 048829          148 RYLNLSGTNIR--TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCN  223 (976)
Q Consensus       148 ~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~  223 (976)
                      ++|||++|++.  .+|..|..++.|+.|.|+. +....+|.++++|++||.|.+..|. +-++|.+++.|++|++|.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI  180 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence            88888777765  5677777777777777777 5677777777888888887777777 7777777777777777753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.16  E-value=3.6e-12  Score=138.72  Aligned_cols=35  Identities=14%  Similarity=0.103  Sum_probs=14.4

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCC---CceEEeecC
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTS---LETINISNC  733 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~l~~c  733 (976)
                      ++|+.|++++|+..+..+..+..+.+   |++|++++|
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~  118 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN  118 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC
Confidence            34444444444443333333222222   455555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.15  E-value=2.7e-12  Score=139.72  Aligned_cols=210  Identities=18%  Similarity=0.141  Sum_probs=120.0

Q ss_pred             CCceEEEEcCCCcc------hhhhhhhcCCCCCceEEeecCCCcccccccccCCCC---CcEEEccCCCCCC----ccCC
Q 048829          699 PSVKVLDVYGCPKL------ESIAERLDNNTSLETINISNCENLKILSSGLHNLCQ---LQQIGIGGCGNLE----SFPE  765 (976)
Q Consensus       699 ~~L~~L~L~~~~~~------~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~---L~~L~l~~~~~l~----~~~~  765 (976)
                      +++++++++++...      ..++..+..+++|+.|++++|......+..+..+.+   |++|++++|....    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            44666666665443      344566777889999999987766555444444444   9999999885431    1122


Q ss_pred             CCCCC-CCccEEEecCCcCcc----cCCCcCCCCCccceEEEeCCCCCCccc------CCCCCccceeeecCCCCccchh
Q 048829          766 GGLPC-AKLRRLEIYDCKRLE----ALPKGLHNLTSLQQLTIIGGELPSLEE------DGLPTNLHSLRIEGNMGIWKSM  834 (976)
Q Consensus       766 ~~~~~-~~L~~L~l~~c~~l~----~~~~~l~~l~~L~~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~  834 (976)
                      ....+ ++|++|++++|....    .++..+..+++|++|++++|.+..-..      ....++|+.|++++|.+.....
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            23334 788889998887542    233455667788888888877763111      1123578888888877654433


Q ss_pred             hhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCc-----cccccccCCCCCCeEe
Q 048829          835 IERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLE-----SLSSSIVDLQNLTKLT  909 (976)
Q Consensus       835 ~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~~l~~l~~L~~L~  909 (976)
                      ......+..+++|++|++++| .....-.....    .......++|++|++++| .++     .+...+..+++|++++
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~----~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~  284 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDN-NLTDAGAAALA----SALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELD  284 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCC-cCchHHHHHHH----HHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEE
Confidence            221234556777777777773 21110000000    000012367777777775 332     2333455556777777


Q ss_pred             ecCCC
Q 048829          910 LYDCP  914 (976)
Q Consensus       910 l~~c~  914 (976)
                      +++|+
T Consensus       285 l~~N~  289 (319)
T cd00116         285 LRGNK  289 (319)
T ss_pred             CCCCC
Confidence            77643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.97  E-value=2.6e-11  Score=123.80  Aligned_cols=182  Identities=19%  Similarity=0.251  Sum_probs=92.4

Q ss_pred             ccccEEEeeccCCcccCc--cccCCCCCccEEEeecCCCCCCCCC---cCCCCCCcEEEEccCCCCCCCCCccccCCCCc
Q 048829          534 CRLEYLRLRYCEGLVKLP--QSSLSLSSLKEIEIYKCSSLVSFPE---VALPSKLKKIEIRECDALKSLPEPWMCDTSSS  608 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~  608 (976)
                      +-+..+++.+|..+++..  ..-..+..|+.|..++|..+++.+-   ....++|+.|.+.+|..+++........+++.
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH  347 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence            334445555554444322  1123455666666666666554433   22356666666666666555544444456666


Q ss_pred             ccEEEEecCCCCccc--c-cccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCc
Q 048829          609 LEILKIWDCHSLTYI--A-EVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNEL  685 (976)
Q Consensus       609 L~~L~l~~~~~l~~~--~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  685 (976)
                      |+.+++.+|..+..-  . .....+.|+.+.+++|..+++-    ++..+.......                       
T Consensus       348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~----gi~~l~~~~c~~-----------------------  400 (483)
T KOG4341|consen  348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE----GIRHLSSSSCSL-----------------------  400 (483)
T ss_pred             hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh----hhhhhhhccccc-----------------------
Confidence            777766666443322  1 1133445666666655544322    111111111111                       


Q ss_pred             ccccccccccCCCCCceEEEEcCCCcch-hhhhhhcCCCCCceEEeecCCCcccc--cccccCCCCCcEEEcc
Q 048829          686 PATLESLEVGNLPPSVKVLDVYGCPKLE-SIAERLDNNTSLETINISNCENLKIL--SSGLHNLCQLQQIGIG  755 (976)
Q Consensus       686 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~  755 (976)
                                   ..|..+.|++|+.+. ..-+-+..+++|+.+++.+|...+.-  ...-.++|++++..+-
T Consensus       401 -------------~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  401 -------------EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             -------------cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence                         334555555554433 22334566777888888888776643  2223457777666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.95  E-value=2.2e-11  Score=124.27  Aligned_cols=258  Identities=19%  Similarity=0.314  Sum_probs=143.7

Q ss_pred             ccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCccc--CccccCCCCCccEEEeecCCCCCCCC
Q 048829          498 QDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVK--LPQSSLSLSSLKEIEIYKCSSLVSFP  575 (976)
Q Consensus       498 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~l~  575 (976)
                      ..+++|++|.+..|..+++.       .+..+...+++|+.|+++.|+....  +-....++..++.+...+|..+..-.
T Consensus       187 ~~C~~l~~l~L~~c~~iT~~-------~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~  259 (483)
T KOG4341|consen  187 RYCRKLRHLNLHSCSSITDV-------SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA  259 (483)
T ss_pred             HhcchhhhhhhcccchhHHH-------HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH
Confidence            34566666666666666553       2333444556777777777765543  11233455566666666765544211


Q ss_pred             ---CcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc---cCCCCCcEEeeccCcCccccccc
Q 048829          576 ---EVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV---QLPLSLKRLDIQRCNKIRTLTVE  649 (976)
Q Consensus       576 ---~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~  649 (976)
                         .......+.++++.+|..+++.........+..|+.|..++|..+...+..   ....+|+.+.+++|..++..   
T Consensus       260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---  336 (483)
T KOG4341|consen  260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---  336 (483)
T ss_pred             HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---
Confidence               022345566666667766666553333345677777777777665543322   44456777777777665543   


Q ss_pred             cccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEE
Q 048829          650 EGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETIN  729 (976)
Q Consensus       650 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  729 (976)
                       ++..+   .-..+.|+.+++.+|....+                                  +.+.....+++.|++|.
T Consensus       337 -~ft~l---~rn~~~Le~l~~e~~~~~~d----------------------------------~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  337 -GFTML---GRNCPHLERLDLEECGLITD----------------------------------GTLASLSRNCPRLRVLS  378 (483)
T ss_pred             -hhhhh---hcCChhhhhhcccccceehh----------------------------------hhHhhhccCCchhccCC
Confidence             11111   11113344444444433222                                  12334456777888888


Q ss_pred             eecCCCcccc-----cccccCCCCCcEEEccCCCCCCccC-CCCCCCCCccEEEecCCcCcccCC--CcCCCCCccceEE
Q 048829          730 ISNCENLKIL-----SSGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRLEIYDCKRLEALP--KGLHNLTSLQQLT  801 (976)
Q Consensus       730 l~~c~~l~~l-----p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~--~~l~~l~~L~~L~  801 (976)
                      ++.|..++..     ...-.+...|+.+.+.+|+.++.-. .....+++|+.+++.+|.....-+  ..-.++|++++..
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            8888777654     3333456778888888887765322 234557788888888887554322  1224566666654


Q ss_pred             Ee
Q 048829          802 II  803 (976)
Q Consensus       802 l~  803 (976)
                      +-
T Consensus       459 ~~  460 (483)
T KOG4341|consen  459 YF  460 (483)
T ss_pred             hc
Confidence            43

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=1.1e-09  Score=103.52  Aligned_cols=131  Identities=26%  Similarity=0.297  Sum_probs=54.9

Q ss_pred             cccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhh-
Q 048829           87 DLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV-  164 (976)
Q Consensus        87 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i-  164 (976)
                      ...+..++|.|.+.++.        ......+. .+.+|++|||++|.|+.++ .+..+++|++|++++|.|+.+++.+ 
T Consensus        14 ~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~   84 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLD   84 (175)
T ss_dssp             ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred             ccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchH
Confidence            34455567777776553        12234565 6889999999999999884 6888999999999999999987665 


Q ss_pred             hccCCccEEecccccchhccc--hhhhccccCceeecCCCCCccccccc----cCCCCCCceecceEecC
Q 048829          165 NKLYNLHSLLLEDCDRLKKLC--ADMGNLIKLHHLNNSNTDSLEETPLG----IGKLTCLQTLCNFVVGK  228 (976)
Q Consensus       165 ~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~~~~~~~  228 (976)
                      ..+++|++|++++ |.+..+-  ..+..+++|++|++.+|. +...+..    +..+++|+.|+...+..
T Consensus        85 ~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   85 KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence            4689999999998 5676653  347788999999999998 6555532    78888888887655543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.5e-09  Score=111.88  Aligned_cols=152  Identities=20%  Similarity=0.128  Sum_probs=97.8

Q ss_pred             CCceEEEEcCCCcch-hhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccC--CCCCCCCCccE
Q 048829          699 PSVKVLDVYGCPKLE-SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP--EGGLPCAKLRR  775 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~  775 (976)
                      +.|+.|.|++|.+.. .+-.....+++|+.|++..|..+..-......+..|++|+|++|+.+. ++  .....+|.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence            567777777777664 344456778888888888875443333334457888888888885554 33  23456788888


Q ss_pred             EEecCCcCccc-CCCc-----CCCCCccceEEEeCCCCCCcccC---CCCCccceeeecCCCCccchhhhcCCcccccCc
Q 048829          776 LEIYDCKRLEA-LPKG-----LHNLTSLQQLTIIGGELPSLEED---GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS  846 (976)
Q Consensus       776 L~l~~c~~l~~-~~~~-----l~~l~~L~~L~l~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  846 (976)
                      |+++.|..-.. +|..     ...+++|++|++..|.|..++..   ...++|+.|.+..|++.+..-..-...++.+++
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~  355 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQ  355 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhh
Confidence            88888873221 2332     36788999999999888766553   456788888888877665432111123445555


Q ss_pred             ccEEE
Q 048829          847 LRYLL  851 (976)
Q Consensus       847 L~~L~  851 (976)
                      |..|+
T Consensus       356 l~~LN  360 (505)
T KOG3207|consen  356 LVKLN  360 (505)
T ss_pred             hhhhc
Confidence            55553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.77  E-value=3.3e-09  Score=100.23  Aligned_cols=104  Identities=29%  Similarity=0.392  Sum_probs=39.8

Q ss_pred             cCCcccEEEccCCcccccccccc-CCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhh-hccccCcee
Q 048829          120 KLQRLRVFSLRGYHISELPDSVG-DLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLIKLHHL  197 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~-~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L  197 (976)
                      +..++|.|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.+ +.+..+++|++|++++ |.+..++..+ ..+++|++|
T Consensus        17 n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccc-cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence            556789999999999987 4565 689999999999999999 4688999999999999 6899997766 479999999


Q ss_pred             ecCCCCCcccccc--ccCCCCCCceecceEec
Q 048829          198 NNSNTDSLEETPL--GIGKLTCLQTLCNFVVG  227 (976)
Q Consensus       198 ~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~~  227 (976)
                      ++++|. +..+..  .+..+++|+.|++..+.
T Consensus        94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             E-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             ECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence            999998 766543  26677777777655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.72  E-value=6.9e-08  Score=102.37  Aligned_cols=96  Identities=26%  Similarity=0.525  Sum_probs=68.2

Q ss_pred             hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCc
Q 048829          717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTS  796 (976)
Q Consensus       717 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~  796 (976)
                      ..+..+.+++.|++++| .++.+|.   -.++|++|.+++|..++.+|..+.  ++|+.|++++|..+..+|.      +
T Consensus        46 ~r~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------s  113 (426)
T PRK15386         46 PQIEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------S  113 (426)
T ss_pred             HHHHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------c
Confidence            33556788999999998 7777772   134799999999988888886442  5899999999977777764      4


Q ss_pred             cceEEEeCCCCCCcccCCCCCccceeeecC
Q 048829          797 LQQLTIIGGELPSLEEDGLPTNLHSLRIEG  826 (976)
Q Consensus       797 L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~  826 (976)
                      |+.|++.++....++  .+|++|+.|.+.+
T Consensus       114 Le~L~L~~n~~~~L~--~LPssLk~L~I~~  141 (426)
T PRK15386        114 VRSLEIKGSATDSIK--NVPNGLTSLSINS  141 (426)
T ss_pred             cceEEeCCCCCcccc--cCcchHhheeccc
Confidence            677777665544432  3455666666643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.69  E-value=1.6e-08  Score=113.26  Aligned_cols=106  Identities=31%  Similarity=0.458  Sum_probs=93.1

Q ss_pred             cccccCCcccEEEccCCccccccccccCCC-cccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccC
Q 048829          116 PKLLKLQRLRVFSLRGYHISELPDSVGDLR-YLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL  194 (976)
Q Consensus       116 ~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L  194 (976)
                      ..+..++.++.|++.++.++.+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++ +.+.++|...+.+++|
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L  188 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhh
Confidence            334466889999999999999998888885 99999999999999999999999999999999 6899999888899999


Q ss_pred             ceeecCCCCCccccccccCCCCCCceecc
Q 048829          195 HHLNNSNTDSLEETPLGIGKLTCLQTLCN  223 (976)
Q Consensus       195 ~~L~l~~~~~~~~lp~~i~~L~~L~~L~~  223 (976)
                      +.|++++|. +..+|..++.+..|++|..
T Consensus       189 ~~L~ls~N~-i~~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         189 NNLDLSGNK-ISDLPPEIELLSALEELDL  216 (394)
T ss_pred             hheeccCCc-cccCchhhhhhhhhhhhhh
Confidence            999999998 9999988777777777743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.64  E-value=2.5e-08  Score=111.62  Aligned_cols=192  Identities=23%  Similarity=0.303  Sum_probs=138.9

Q ss_pred             EEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCC-CCcEEEccCCCCCCccCCCCCCCCCccEEEecCC
Q 048829          703 VLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLC-QLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC  781 (976)
Q Consensus       703 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  781 (976)
                      .+++..+.....+.. +..++.++.|++.+ +.+..+|.....+. +|+.|++++| .+..+|.....++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISE-LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchh-hhcccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence            455555554333322 33447788888888 56666766555563 8889999888 66777656677888999999988


Q ss_pred             cCcccCCCcCCCCCccceEEEeCCCCCCcccC-CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCc
Q 048829          782 KRLEALPKGLHNLTSLQQLTIIGGELPSLEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMV  860 (976)
Q Consensus       782 ~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~  860 (976)
                      + +..+|...+.++.|+.|++++|.+..++.. +.+..|+++.+++|......     ..+..+.++..+.+.+  +.+.
T Consensus       174 ~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~--n~~~  245 (394)
T COG4886         174 D-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSN--NKLE  245 (394)
T ss_pred             h-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCC--ceee
Confidence            8 777777666888899999999999888876 46777999999888644333     2467777888887665  4555


Q ss_pred             cCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCc
Q 048829          861 SFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKL  916 (976)
Q Consensus       861 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l  916 (976)
                      .++...         ..+++++.|++++ +.+.+++. +..+.+|+.|++++....
T Consensus       246 ~~~~~~---------~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         246 DLPESI---------GNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             eccchh---------ccccccceecccc-cccccccc-ccccCccCEEeccCcccc
Confidence            544444         4778899999998 78888885 888889999999884443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5.4e-09  Score=107.74  Aligned_cols=241  Identities=14%  Similarity=0.135  Sum_probs=121.8

Q ss_pred             hhhhhcCCCCCceEEeecCCCccccc--ccccCCCCCcEEEccCCCCCCcc---CCCCCCCCCccEEEecCCcCcccCCC
Q 048829          715 IAERLDNNTSLETINISNCENLKILS--SGLHNLCQLQQIGIGGCGNLESF---PEGGLPCAKLRRLEIYDCKRLEALPK  789 (976)
Q Consensus       715 ~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~c~~l~~~~~  789 (976)
                      +...-.++.+|++..+.+| .....+  .....|+.++.|++++| .+..+   ......+|+|+.|+++.|....-...
T Consensus       113 i~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s  190 (505)
T KOG3207|consen  113 IAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS  190 (505)
T ss_pred             HHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence            3444556777888777775 333333  24455777788888777 33222   11234567777777777763222211


Q ss_pred             c-CCCCCccceEEEeCCCCCCccc---CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCC
Q 048829          790 G-LHNLTSLQQLTIIGGELPSLEE---DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPE  865 (976)
Q Consensus       790 ~-l~~l~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~  865 (976)
                      . -..++.|+.|.++++.++.-..   ...+|+|+.|++.+|.......    .....++.|+.|+|++  +.+-.++..
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~LdLs~--N~li~~~~~  264 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQELDLSN--NNLIDFDQG  264 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhccccC--Ccccccccc
Confidence            1 1345666666666665552111   1235666666666664222221    2234556666666666  233333311


Q ss_pred             CcccccCCCCCCccccceeeccccCCCcccc--cc-----ccCCCCCCeEeecCCCCccccCC---CCCcccccceeecC
Q 048829          866 PEDRRLGTTLPLPASLTSLSIAFFPNLESLS--SS-----IVDLQNLTKLTLYDCPKLKYFPE---KGLPSSLLQLRIYR  935 (976)
Q Consensus       866 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~-----l~~l~~L~~L~l~~c~~l~~i~~---~~~~~~L~~L~i~~  935 (976)
                      -       ....++.|..|.++. ..+.+|.  ..     ...+++|++|++.+++ +...+.   .-..++|+.|.+.+
T Consensus       265 ~-------~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  265 Y-------KVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             c-------ccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence            1       113566666666666 3444432  11     2346666666666633 332222   22234555555544


Q ss_pred             CcchHHHHhccCCccccccccccEE-EECCEEEeCCCCCCCC
Q 048829          936 CPLIEEKCRKDGGQYWDLLTHIPYA-RIAGKWVFNDDSTKED  976 (976)
Q Consensus       936 c~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~  976 (976)
                      .+.=+|    ++-....-|+.|+.+ .+++--+....|-.||
T Consensus       336 n~ln~e----~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AE  373 (505)
T KOG3207|consen  336 NYLNKE----TDTAKLLVIARISQLVKLNDVDISPNERRDAE  373 (505)
T ss_pred             cccccc----ccceeEEeeeehhhhhhhcccccChHHhhhhh
Confidence            332121    112234556666664 5566666665555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.61  E-value=2.5e-09  Score=113.67  Aligned_cols=106  Identities=26%  Similarity=0.474  Sum_probs=68.0

Q ss_pred             ccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccc
Q 048829          113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI  192 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~  192 (976)
                      ++|..+..+-.|..+.|..|.|..+|.++++|..|.||||+.|++..+|..++.|. |++|.+++ +++..+|.+++.+.
T Consensus        89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~  166 (722)
T KOG0532|consen   89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLP  166 (722)
T ss_pred             cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccch
Confidence            44555556666666666666666666666666666666666666666666666554 66666666 46666666666666


Q ss_pred             cCceeecCCCCCccccccccCCCCCCcee
Q 048829          193 KLHHLNNSNTDSLEETPLGIGKLTCLQTL  221 (976)
Q Consensus       193 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L  221 (976)
                      .|.+||.+.|. +..+|..++.|.+|+.|
T Consensus       167 tl~~ld~s~ne-i~slpsql~~l~slr~l  194 (722)
T KOG0532|consen  167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDL  194 (722)
T ss_pred             hHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence            66666666666 66666666666666555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.60  E-value=1.2e-08  Score=99.57  Aligned_cols=127  Identities=16%  Similarity=0.203  Sum_probs=94.1

Q ss_pred             CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829          770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY  849 (976)
Q Consensus       770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  849 (976)
                      +..|+++|+++|. ++.+.+++.-+|.++.|++++|.|..+...+.+++|..||+++|.......    | -..+-+.++
T Consensus       283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G----w-h~KLGNIKt  356 (490)
T KOG1259|consen  283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG----W-HLKLGNIKT  356 (490)
T ss_pred             Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh----h-HhhhcCEee
Confidence            4567888888877 666777777778888888888888877777777888888888887665433    2 345677888


Q ss_pred             EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc--cccCCCCCCeEeecCCCC
Q 048829          850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS--SIVDLQNLTKLTLYDCPK  915 (976)
Q Consensus       850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~l~~c~~  915 (976)
                      |.+++  +.++.+..-          ..+-+|..||+++ |+++.+..  +++++|-|+++.+.++|.
T Consensus       357 L~La~--N~iE~LSGL----------~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  357 LKLAQ--NKIETLSGL----------RKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             eehhh--hhHhhhhhh----------Hhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence            88887  455555432          3678888888888 67777765  788888899998888764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.57  E-value=2.1e-09  Score=114.13  Aligned_cols=189  Identities=20%  Similarity=0.215  Sum_probs=126.8

Q ss_pred             eEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCC
Q 048829          702 KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC  781 (976)
Q Consensus       702 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  781 (976)
                      ...|++.|.+ ..+|..+..|..|+.+.++. +.+..+|..+.++..|.+|+++.| .+..+|..+..+ -|+.|-+++|
T Consensus        78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRF-SELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNN  153 (722)
T ss_pred             hhhhcccccc-ccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecC
Confidence            4456666644 45666777777888888887 567778888888999999999988 677788777766 5888888877


Q ss_pred             cCcccCCCcCCCCCccceEEEeCCCCCCccc-CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCc
Q 048829          782 KRLEALPKGLHNLTSLQQLTIIGGELPSLEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMV  860 (976)
Q Consensus       782 ~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~  860 (976)
                      + ++.+|..++.++.|..|+.+.|+|..++. .+.+.+|+.|.+..|........     +. .-.|..||++.  |.+.
T Consensus       154 k-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-----l~-~LpLi~lDfSc--Nkis  224 (722)
T KOG0532|consen  154 K-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-----LC-SLPLIRLDFSC--NKIS  224 (722)
T ss_pred             c-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-----Hh-CCceeeeeccc--Ccee
Confidence            6 88888888888888888888888888764 34556666666666666554432     12 23455666664  4566


Q ss_pred             cCCCCCcccccCCCCCCccccceeeccccCCCccccccc---cCCCCCCeEeecCC
Q 048829          861 SFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSI---VDLQNLTKLTLYDC  913 (976)
Q Consensus       861 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l---~~l~~L~~L~l~~c  913 (976)
                      .+|..+         ..+..|++|.|.+ |=|++=|..+   +...--|+|++.-|
T Consensus       225 ~iPv~f---------r~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 YLPVDF---------RKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ecchhh---------hhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence            666655         3566666666665 3444444311   22333455566555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=5.9e-08  Score=75.03  Aligned_cols=57  Identities=32%  Similarity=0.531  Sum_probs=40.3

Q ss_pred             CcccEEEccCCcccccc-ccccCCCcccEEecCCCCccccc-hhhhccCCccEEecccc
Q 048829          122 QRLRVFSLRGYHISELP-DSVGDLRYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDC  178 (976)
Q Consensus       122 ~~Lr~L~Ls~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~  178 (976)
                      ++|++|++++|+++.+| ..|.++++|++|++++|.+..+| ..|.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            35777777777777774 46677777777777777777773 45677777777777764

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.48  E-value=3e-08  Score=96.87  Aligned_cols=100  Identities=33%  Similarity=0.407  Sum_probs=59.8

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccc--------------
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLC--------------  185 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--------------  185 (976)
                      .++.|..||||+|.|+.+..++.-++.+|+|++|+|.|..+ ..+..|.+|+.|||++| .+.++-              
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence            55666666666666666666666666666666666666655 33666666666666663 333332              


Q ss_pred             --------hhhhccccCceeecCCCCCccccc--cccCCCCCCceec
Q 048829          186 --------ADMGNLIKLHHLNNSNTDSLEETP--LGIGKLTCLQTLC  222 (976)
Q Consensus       186 --------~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~  222 (976)
                              +++++|.+|..||+++|+ +..+.  .+||+|+.|++|.
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHh
Confidence                    345556666666666665 55544  2366666666654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=2.5e-07  Score=71.54  Aligned_cols=58  Identities=31%  Similarity=0.458  Sum_probs=51.9

Q ss_pred             CcccEEecCCCCccccc-hhhhccCCccEEecccccchhccch-hhhccccCceeecCCCC
Q 048829          145 RYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       145 ~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~  203 (976)
                      ++|++|++++|++..+| ..|.++++|++|++++ +.+..+|. .|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57999999999999997 4789999999999998 57888865 58999999999999986

...

>PLN03150 hypothetical protein; Provisional

Probab=98.34  E-value=5.8e-07  Score=105.23  Aligned_cols=93  Identities=25%  Similarity=0.358  Sum_probs=82.4

Q ss_pred             cccEEEccCCccc-cccccccCCCcccEEecCCCCcc-ccchhhhccCCccEEecccccchhccchhhhccccCceeecC
Q 048829          123 RLRVFSLRGYHIS-ELPDSVGDLRYLRYLNLSGTNIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNS  200 (976)
Q Consensus       123 ~Lr~L~Ls~~~i~-~lp~~~~~L~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~  200 (976)
                      .++.|+|++|.+. .+|..|+.+++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..+++|++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4889999999987 56999999999999999999997 789999999999999999975556889999999999999999


Q ss_pred             CCCCccccccccCCC
Q 048829          201 NTDSLEETPLGIGKL  215 (976)
Q Consensus       201 ~~~~~~~lp~~i~~L  215 (976)
                      +|.....+|..++.+
T Consensus       499 ~N~l~g~iP~~l~~~  513 (623)
T PLN03150        499 GNSLSGRVPAALGGR  513 (623)
T ss_pred             CCcccccCChHHhhc
Confidence            998666888877653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.33  E-value=1.7e-06  Score=91.98  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=15.8

Q ss_pred             CCCcEEEccCCCCCCccCCCCCCCCCccEEEecCC
Q 048829          747 CQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC  781 (976)
Q Consensus       747 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  781 (976)
                      ++|++|++++|..+. +|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence            456666666664332 232211  35666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.30  E-value=9e-08  Score=96.28  Aligned_cols=231  Identities=17%  Similarity=0.129  Sum_probs=152.0

Q ss_pred             CCceEEEEcCCCcchh----hhhhhcCCCCCceEEeecCCCccc----cc-------ccccCCCCCcEEEccCCCCCCcc
Q 048829          699 PSVKVLDVYGCPKLES----IAERLDNNTSLETINISNCENLKI----LS-------SGLHNLCQLQQIGIGGCGNLESF  763 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~c~~l~~----lp-------~~~~~l~~L~~L~l~~~~~l~~~  763 (976)
                      .+++.++|++|.+-..    +...+.+.++|+..++++ -..+.    +|       ..+..+|+|++|+||+|..-...
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            6899999999987653    455677788888888887 23322    23       34455789999999998543222


Q ss_pred             CC----CCCCCCCccEEEecCCcCcccC--------------CCcCCCCCccceEEEeCCCCCCcccC------CCCCcc
Q 048829          764 PE----GGLPCAKLRRLEIYDCKRLEAL--------------PKGLHNLTSLQQLTIIGGELPSLEED------GLPTNL  819 (976)
Q Consensus       764 ~~----~~~~~~~L~~L~l~~c~~l~~~--------------~~~l~~l~~L~~L~l~~~~l~~~~~~------~~~~~L  819 (976)
                      +.    -+.++..|++|.+.+|- ++..              .....+-+.|+++..+.|++...+..      ...+.|
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            22    23457899999999987 3322              12345678899999999998876542      245789


Q ss_pred             ceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcc----c
Q 048829          820 HSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES----L  895 (976)
Q Consensus       820 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----l  895 (976)
                      +.+.+..|.+...........+..+++|+.|||.+ |    .|..++ .....+++...++|+.|++++|.--..    +
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-N----tft~eg-s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-N----TFTLEG-SVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeeccc-c----hhhhHH-HHHHHHHhcccchheeecccccccccccHHHH
Confidence            99999988776543321124678899999999998 2    222222 234456667888999999999843322    1


Q ss_pred             cccc-cCCCCCCeEeecCCCCccccCC----CCC--cccccceeecCCcc
Q 048829          896 SSSI-VDLQNLTKLTLYDCPKLKYFPE----KGL--PSSLLQLRIYRCPL  938 (976)
Q Consensus       896 ~~~l-~~l~~L~~L~l~~c~~l~~i~~----~~~--~~~L~~L~i~~c~~  938 (976)
                      -..+ ...|+|+.|.+.+|. ++.=..    ..+  -+.|..|++++|..
T Consensus       262 ~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            1122 347899999999864 332110    001  36888899988854

>PLN03150 hypothetical protein; Provisional

Probab=98.25  E-value=1.5e-06  Score=101.88  Aligned_cols=106  Identities=15%  Similarity=0.106  Sum_probs=89.4

Q ss_pred             CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829          700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY  779 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  779 (976)
                      .++.|+|++|.+.+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999987777888889999999999999997777888888889999999999


Q ss_pred             CCcCcccCCCcCCCC-CccceEEEeCC
Q 048829          780 DCKRLEALPKGLHNL-TSLQQLTIIGG  805 (976)
Q Consensus       780 ~c~~l~~~~~~l~~l-~~L~~L~l~~~  805 (976)
                      +|...+.+|..+... .++..+++.+|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCC
Confidence            999888888877543 35556666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.2e-06  Score=61.55  Aligned_cols=38  Identities=32%  Similarity=0.508  Sum_probs=22.9

Q ss_pred             cccEEEccCCccccccccccCCCcccEEecCCCCcccc
Q 048829          123 RLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTL  160 (976)
Q Consensus       123 ~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l  160 (976)
                      +|++|++++|+|+.+|..+++|++|++|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            56666666666666655566666666666666666554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.7e-08  Score=98.71  Aligned_cols=83  Identities=13%  Similarity=0.192  Sum_probs=37.7

Q ss_pred             CceEEEEcCCCcchh-hhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC--CCCCCCCccEE
Q 048829          700 SVKVLDVYGCPKLES-IAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE--GGLPCAKLRRL  776 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L  776 (976)
                      .|++|||+.-.+... +...+..|.+|+.|.+.+...-..+...+..-..|+.|+++.|..+++...  .+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666665544332 223344455555555555433333334444445555555555544433221  12234444444


Q ss_pred             EecCCc
Q 048829          777 EIYDCK  782 (976)
Q Consensus       777 ~l~~c~  782 (976)
                      +++.|.
T Consensus       266 NlsWc~  271 (419)
T KOG2120|consen  266 NLSWCF  271 (419)
T ss_pred             CchHhh
Confidence            444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=2e-07  Score=91.42  Aligned_cols=59  Identities=19%  Similarity=0.266  Sum_probs=38.0

Q ss_pred             CCceEEEEcCCCcch-hhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCC
Q 048829          699 PSVKVLDVYGCPKLE-SIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGC  757 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~  757 (976)
                      |+|.+|||++|..+. ....++..++.|++|.++.|..+..- --.+...|+|.+|++-+|
T Consensus       313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            566667776664433 33455777788888888887655311 123455788888888877

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.06  E-value=8.9e-07  Score=99.09  Aligned_cols=106  Identities=25%  Similarity=0.327  Sum_probs=82.0

Q ss_pred             cccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhcccc
Q 048829          114 ILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK  193 (976)
Q Consensus       114 ~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~  193 (976)
                      +...+..++.|.+|++.+|.|..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++++ |.+..++ ++..+++
T Consensus        87 ~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~  163 (414)
T KOG0531|consen   87 ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDIS-GLESLKS  163 (414)
T ss_pred             hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-Ccchhcc-CCccchh
Confidence            34445688899999999999888866588899999999999999888 6677888899999998 5777763 5677889


Q ss_pred             CceeecCCCCCccccccc-cCCCCCCceecc
Q 048829          194 LHHLNNSNTDSLEETPLG-IGKLTCLQTLCN  223 (976)
Q Consensus       194 L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~  223 (976)
                      |+.+++++|. +..+... ...+.+++.+.+
T Consensus       164 L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l  193 (414)
T KOG0531|consen  164 LKLLDLSYNR-IVDIENDELSELISLEELDL  193 (414)
T ss_pred             hhcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence            9999999988 6666553 455666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.04  E-value=9.5e-07  Score=98.85  Aligned_cols=189  Identities=21%  Similarity=0.257  Sum_probs=88.4

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      .+|..|++.+|.+.+... .+..+++|++|++++| .++.+ .++..++.|+.|++++| .+..+.. +..+++|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhhccc-chhhhhcchheecccc-ccccc-cchhhccchhhheeccC-cchhccC-CccchhhhcccC
Confidence            455555555554433221 1444555666666653 33333 22344455566666655 3333322 222455555666


Q ss_pred             cCCcCcccCCCc-CCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCc--ccEEEEecc
Q 048829          779 YDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS--LRYLLIRGC  855 (976)
Q Consensus       779 ~~c~~l~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~l~~c  855 (976)
                      ++|.. ..+... +..+.+++.+++.+|.+..+........+..+++..|.+.....      +..++.  |+.+++++ 
T Consensus       170 ~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~------l~~~~~~~L~~l~l~~-  241 (414)
T KOG0531|consen  170 SYNRI-VDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG------LNELVMLHLRELYLSG-  241 (414)
T ss_pred             Ccchh-hhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC------cccchhHHHHHHhccc-
Confidence            55552 222211 34555555555655555555444444444444555555444322      122222  55666665 


Q ss_pred             CCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecC
Q 048829          856 DDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYD  912 (976)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~  912 (976)
                       +.+..++...         ..+..+..|++.+ +.+..+. .+...+.+..+....
T Consensus       242 -n~i~~~~~~~---------~~~~~l~~l~~~~-n~~~~~~-~~~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  242 -NRISRSPEGL---------ENLKNLPVLDLSS-NRISNLE-GLERLPKLSELWLND  286 (414)
T ss_pred             -Cccccccccc---------cccccccccchhh-ccccccc-cccccchHHHhccCc
Confidence             2333332222         3455666666665 4444443 333444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=4.2e-06  Score=58.78  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=29.8

Q ss_pred             CcccEEecCCCCccccchhhhccCCccEEecccccchhccc
Q 048829          145 RYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLC  185 (976)
Q Consensus       145 ~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp  185 (976)
                      ++|++|++++|+|+.+|..|++|++|++|++++| .+..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            4688888888888888877888888888888884 566554

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.00  E-value=7.4e-07  Score=89.87  Aligned_cols=137  Identities=18%  Similarity=0.167  Sum_probs=84.7

Q ss_pred             CCccEEEecCCcCcccCCC-----cCCCCCccceEEEeCCCCCCccc------CCCCCccceeeecCCCCccchhhhcCC
Q 048829          771 AKLRRLEIYDCKRLEALPK-----GLHNLTSLQQLTIIGGELPSLEE------DGLPTNLHSLRIEGNMGIWKSMIERGR  839 (976)
Q Consensus       771 ~~L~~L~l~~c~~l~~~~~-----~l~~l~~L~~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~  839 (976)
                      +.|+++....|. +...+.     .+...+.|+.+.+..|.|..=..      ...++.|+.||+..|.+..........
T Consensus       157 ~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            467777776665 433332     44556777777777766654221      134677888888888777655443335


Q ss_pred             cccccCcccEEEEeccCCCCccCCCCCcccccCCCC-CCccccceeeccccCCCcc-----ccccccCCCCCCeEeecCC
Q 048829          840 GFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTL-PLPASLTSLSIAFFPNLES-----LSSSIVDLQNLTKLTLYDC  913 (976)
Q Consensus       840 ~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~-----l~~~l~~l~~L~~L~l~~c  913 (976)
                      .+..+++|+.|++++|... .    ++ ......++ ...++|+.|.+.+| .++.     +...+...+.|+.|++++|
T Consensus       236 aL~s~~~L~El~l~dcll~-~----~G-a~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLE-N----EG-AIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             Hhcccchheeecccccccc-c----cc-HHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            6777889999999997311 1    11 00001111 24789999999994 4532     2225566889999999996


Q ss_pred             CC
Q 048829          914 PK  915 (976)
Q Consensus       914 ~~  915 (976)
                      ..
T Consensus       309 ~l  310 (382)
T KOG1909|consen  309 RL  310 (382)
T ss_pred             cc
Confidence            53

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=2.4e-06  Score=74.02  Aligned_cols=92  Identities=25%  Similarity=0.268  Sum_probs=72.4

Q ss_pred             cccCCcccEEEccCCccccccccc-cCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCce
Q 048829          118 LLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHH  196 (976)
Q Consensus       118 ~~~l~~Lr~L~Ls~~~i~~lp~~~-~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  196 (976)
                      +.+..+|...+|++|.+..+|..| ...+-++.|+|++|.|..+|..+..++.|+.|+++. |.+...|..|..|.+|-.
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDM  127 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHH
Confidence            336677778888888888887777 445588888888888888888888888888888888 577778888888888888


Q ss_pred             eecCCCCCccccccc
Q 048829          197 LNNSNTDSLEETPLG  211 (976)
Q Consensus       197 L~l~~~~~~~~lp~~  211 (976)
                      |+..+|. ...+|..
T Consensus       128 Lds~~na-~~eid~d  141 (177)
T KOG4579|consen  128 LDSPENA-RAEIDVD  141 (177)
T ss_pred             hcCCCCc-cccCcHH
Confidence            8888877 6667655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=1.1e-05  Score=79.40  Aligned_cols=207  Identities=14%  Similarity=0.126  Sum_probs=123.7

Q ss_pred             ceEEEEcCCCcch--hhhhhhcCCCCCceEEeecCCCcc--cccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEE
Q 048829          701 VKVLDVYGCPKLE--SIAERLDNNTSLETINISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL  776 (976)
Q Consensus       701 L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  776 (976)
                      ++.|.+.+|.+-.  .....-..++.++++|+.+|....  ++...+.++|.|++|+++.|+.-..|...-.+..+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            4455555554322  222223356778889998854332  345667789999999999886544443222567789999


Q ss_pred             EecCCcCc-ccCCCcCCCCCccceEEEeCCCCCCcccC-----CCCCccceeeecCCCCccchhhhcCCcccccCcccEE
Q 048829          777 EIYDCKRL-EALPKGLHNLTSLQQLTIIGGELPSLEED-----GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL  850 (976)
Q Consensus       777 ~l~~c~~l-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  850 (976)
                      -+.|-... +.....+..+|.+++|.++.|.+..+..+     ..-+.++.|...+|....-...-  .....+|++..+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSV  204 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchhe
Confidence            88875421 22333567888899999888876655432     23346777777777644322111  223456788877


Q ss_pred             EEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc--cccCCCCCCeEeecCCCCcccc
Q 048829          851 LIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS--SIVDLQNLTKLTLYDCPKLKYF  919 (976)
Q Consensus       851 ~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~l~~c~~l~~i  919 (976)
                      -+..|  -+.+...+.       .+..++.+.-|.++. +++.+..+  .+..++.|..|.+.+.|....+
T Consensus       205 ~v~e~--PlK~~s~ek-------~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  205 FVCEG--PLKTESSEK-------GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             eeecC--cccchhhcc-------cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            77763  222222221       123556666777777 56655544  5667777777777776655544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.76  E-value=3.4e-06  Score=73.11  Aligned_cols=101  Identities=19%  Similarity=0.269  Sum_probs=85.5

Q ss_pred             cCCcccEEEccCCccccccccc---cCCCcccEEecCCCCccccchhhhc-cCCccEEecccccchhccchhhhccccCc
Q 048829          120 KLQRLRVFSLRGYHISELPDSV---GDLRYLRYLNLSGTNIRTLPESVNK-LYNLHSLLLEDCDRLKKLCADMGNLIKLH  195 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~---~~L~~L~~L~L~~n~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~  195 (976)
                      .-+.+..+||+.|.+..+++..   ....+|...+|++|.+..+|+.|.. ..-..+|++++ +.+.++|.++..++.|+
T Consensus        25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR  103 (177)
T ss_pred             HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence            3455677899999887776554   5567888889999999999998865 45999999999 79999999999999999


Q ss_pred             eeecCCCCCccccccccCCCCCCceec
Q 048829          196 HLNNSNTDSLEETPLGIGKLTCLQTLC  222 (976)
Q Consensus       196 ~L~l~~~~~~~~lp~~i~~L~~L~~L~  222 (976)
                      .|+++.|. +...|+-|..|.+|-.|.
T Consensus       104 ~lNl~~N~-l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen  104 SLNLRFNP-LNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hcccccCc-cccchHHHHHHHhHHHhc
Confidence            99999998 888888888787777774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.70  E-value=1.8e-06  Score=94.86  Aligned_cols=122  Identities=24%  Similarity=0.190  Sum_probs=88.0

Q ss_pred             cceEEEeCCCCCCccc-CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCC
Q 048829          797 LQQLTIIGGELPSLEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTL  875 (976)
Q Consensus       797 L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~  875 (976)
                      |.+.+.+.|.+..+.. ..+++.|+.|++++|+.....      .+..|+.|++|||++  |.+..+|.-.         
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsy--N~L~~vp~l~---------  228 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSY--NCLRHVPQLS---------  228 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH------HHHhccccccccccc--chhccccccc---------
Confidence            4444445566655433 356788999999999988764      478899999999998  4566666543         


Q ss_pred             CCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCC---CCcccccceeecCCcc
Q 048829          876 PLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK---GLPSSLLQLRIYRCPL  938 (976)
Q Consensus       876 ~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~---~~~~~L~~L~i~~c~~  938 (976)
                      ..--.|+.|.+++ |.++.+- ++.++.+|+.||+++ +-+....+-   +...+|..|.+.|+|.
T Consensus       229 ~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  229 MVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            1223499999999 7888887 888999999999998 445444332   2247889999999875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=6.2e-05  Score=87.82  Aligned_cols=60  Identities=22%  Similarity=0.370  Sum_probs=32.4

Q ss_pred             ccc-cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccc--hhhhccCCccEEeccc
Q 048829          117 KLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP--ESVNKLYNLHSLLLED  177 (976)
Q Consensus       117 ~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~  177 (976)
                      .++ ++++|+.||+|+++++.+ ..+++|++|++|.+++-.+..-.  ..+.+|++|++||+|.
T Consensus       167 ~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  167 QLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             HHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            344 555666666666655555 45555566666555554444221  2445556666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.53  E-value=4.1e-06  Score=92.24  Aligned_cols=119  Identities=25%  Similarity=0.176  Sum_probs=71.7

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchh-hhccccCceee
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLN  198 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  198 (976)
                      ..-.|.+-+.++|.+..+..++.-++.|+.|||++|++.+. ..+..|.+|++|||++ |.+..+|.- ..... |+.|.
T Consensus       162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhccccccccccc-chhccccccchhhhh-heeee
Confidence            34456666777777766666666677777777777777665 4666777777777777 466666642 33333 77777


Q ss_pred             cCCCCCccccccccCCCCCCceecceEecCCCCCCchhhhccccc
Q 048829          199 NSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL  243 (976)
Q Consensus       199 l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L  243 (976)
                      +++|. +.++ .++.+|.+|+.|++..+-......+.-|..|..|
T Consensus       239 lrnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L  281 (1096)
T KOG1859|consen  239 LRNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL  281 (1096)
T ss_pred             ecccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence            77766 4444 4566666666665544433333333333333333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=8.7e-05  Score=73.31  Aligned_cols=85  Identities=13%  Similarity=0.030  Sum_probs=49.2

Q ss_pred             hccccccEEEeeccCCcc--cCccccCCCCCccEEEeecCCCCC-CCCCc-CCCCCCcEEEEccCCCCCCCCCccccCCC
Q 048829          531 ELSCRLEYLRLRYCEGLV--KLPQSSLSLSSLKEIEIYKCSSLV-SFPEV-ALPSKLKKIEIRECDALKSLPEPWMCDTS  606 (976)
Q Consensus       531 ~~~~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~l  606 (976)
                      ...+.++.++|.+|.+.+  .+...+.++|.|+.|+++. |.+. .+... .-..+|++|-+.+.. +.--....+...+
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDL  145 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcc
Confidence            344677778887776543  3444456788888888876 4443 22222 224577777777665 2222222222466


Q ss_pred             CcccEEEEecC
Q 048829          607 SSLEILKIWDC  617 (976)
Q Consensus       607 ~~L~~L~l~~~  617 (976)
                      |.++.|++++|
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            77777777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.29  E-value=0.00031  Score=65.75  Aligned_cols=105  Identities=24%  Similarity=0.286  Sum_probs=80.5

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhh-ccCCccEEecccccchhccch--hhhccccCce
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVN-KLYNLHSLLLEDCDRLKKLCA--DMGNLIKLHH  196 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~  196 (976)
                      -....-.+||++|.+..+ ..|..++.|.+|.|.+|.|+.|-..+. -+.+|++|.|.+ |.+.++..  .+..+++|++
T Consensus        40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccce
Confidence            455677889999998876 567889999999999999999855554 467899999998 57776632  3677889999


Q ss_pred             eecCCCCCccccccc----cCCCCCCceecceEec
Q 048829          197 LNNSNTDSLEETPLG----IGKLTCLQTLCNFVVG  227 (976)
Q Consensus       197 L~l~~~~~~~~lp~~----i~~L~~L~~L~~~~~~  227 (976)
                      |.+-+|. +..-+.-    +.++++|++|+...+.
T Consensus       118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence            9999987 5555422    7888888888654443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.22  E-value=0.00017  Score=84.26  Aligned_cols=76  Identities=25%  Similarity=0.423  Sum_probs=41.6

Q ss_pred             CcccEEecCCCCcc-c-cchhhhc-cCCccEEecccccchhc--cchhhhccccCceeecCCCCCccccccccCCCCCCc
Q 048829          145 RYLRYLNLSGTNIR-T-LPESVNK-LYNLHSLLLEDCDRLKK--LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQ  219 (976)
Q Consensus       145 ~~L~~L~L~~n~i~-~-lp~~i~~-L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~  219 (976)
                      .+||+||++|...- . =|..++. |+.|+.|.+++ ..+..  .-.-..+.++|+.||+++++ +..+ .++++|++||
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence            36666666664322 1 1344443 66666666665 22211  11224456677777777766 5555 5667777777


Q ss_pred             eecc
Q 048829          220 TLCN  223 (976)
Q Consensus       220 ~L~~  223 (976)
                      +|..
T Consensus       199 ~L~m  202 (699)
T KOG3665|consen  199 VLSM  202 (699)
T ss_pred             HHhc
Confidence            6643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.20  E-value=4.9e-05  Score=88.13  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=21.2

Q ss_pred             CCCCccEEEeecCCCCCCC---CCcCCCCCCcEEEEcc
Q 048829          556 SLSSLKEIEIYKCSSLVSF---PEVALPSKLKKIEIRE  590 (976)
Q Consensus       556 ~l~~L~~L~l~~c~~l~~l---~~~~~~~~L~~L~l~~  590 (976)
                      .++.|+.|.+.+|..+...   +.....+.|+.|++++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            3677777777777666642   2233356666666666

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.15  E-value=5.7e-05  Score=87.59  Aligned_cols=64  Identities=25%  Similarity=0.434  Sum_probs=31.0

Q ss_pred             CCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc---cCCCCCcEEeeccCcCc
Q 048829          580 PSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV---QLPLSLKRLDIQRCNKI  643 (976)
Q Consensus       580 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l  643 (976)
                      +++|+.|+++.|..+++.........+++|+.|.+.+|..++...-.   ..+++|++|+++.|..+
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            45555555555554444433333234556666665555543322111   23344666666655544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.75  E-value=0.001  Score=65.16  Aligned_cols=209  Identities=17%  Similarity=0.083  Sum_probs=130.0

Q ss_pred             CCCceEEEEcCCCcchhh----hhhhcCCCCCceEEeecCCCccc----cc-------ccccCCCCCcEEEccCCCCCCc
Q 048829          698 PPSVKVLDVYGCPKLESI----AERLDNNTSLETINISNCENLKI----LS-------SGLHNLCQLQQIGIGGCGNLES  762 (976)
Q Consensus       698 ~~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~c~~l~~----lp-------~~~~~l~~L~~L~l~~~~~l~~  762 (976)
                      ...++.++||+|.+....    ...+.+-.+|+..++++- ..+.    +|       ..+-.+|+|++.++++|..-..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            378999999999887654    455667788888888762 2221    22       3445689999999999976555


Q ss_pred             cCCC----CCCCCCccEEEecCCcCcccCCC--------------cCCCCCccceEEEeCCCCCCcccC------CCCCc
Q 048829          763 FPEG----GLPCAKLRRLEIYDCKRLEALPK--------------GLHNLTSLQQLTIIGGELPSLEED------GLPTN  818 (976)
Q Consensus       763 ~~~~----~~~~~~L~~L~l~~c~~l~~~~~--------------~l~~l~~L~~L~l~~~~l~~~~~~------~~~~~  818 (976)
                      +|..    +..-..|++|.+++|. ++.+..              ...+-|.|++.....|++...+..      .+-.+
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            5543    3446789999999886 544422              224568899998888988876542      12258


Q ss_pred             cceeeecCCCCccchhhh-cCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc
Q 048829          819 LHSLRIEGNMGIWKSMIE-RGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS  897 (976)
Q Consensus       819 L~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  897 (976)
                      |+.+.+..|.+-.....- ....+..+++|+.||+.++  .   |+..+ ++-...++..-+.|+.|.+.+|---..=..
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN--t---ft~~g-S~~La~al~~W~~lrEL~lnDClls~~G~~  260 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN--T---FTLEG-SRYLADALCEWNLLRELRLNDCLLSNEGVK  260 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc--c---hhhhh-HHHHHHHhcccchhhhccccchhhccccHH
Confidence            899999888775431100 0023566788999998882  1   21111 112223333446678888888733221111


Q ss_pred             -cc-----cCCCCCCeEeecCCC
Q 048829          898 -SI-----VDLQNLTKLTLYDCP  914 (976)
Q Consensus       898 -~l-----~~l~~L~~L~l~~c~  914 (976)
                       .+     ...|+|..|-..++.
T Consensus       261 ~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         261 SVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             HHHHHhhhhcCCCccccccchhh
Confidence             11     235667777666643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.70  E-value=0.0017  Score=63.68  Aligned_cols=95  Identities=23%  Similarity=0.273  Sum_probs=63.8

Q ss_pred             cccccccCCcccEEEccCCccc-----cccccccCCCcccEEecCCCCcc----ccch-------hhhccCCccEEeccc
Q 048829          114 ILPKLLKLQRLRVFSLRGYHIS-----ELPDSVGDLRYLRYLNLSGTNIR----TLPE-------SVNKLYNLHSLLLED  177 (976)
Q Consensus       114 ~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~~~~L~~L~~L~L~~n~i~----~lp~-------~i~~L~~L~~L~L~~  177 (976)
                      +...+..+..+..+|||||-|.     .+...|.+-++|++-+++.-...    .+|+       .+-++++|+..+||.
T Consensus        22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            3444446888899999999875     35566777788888888764221    3333       455678888888888


Q ss_pred             ccchhccchh----hhccccCceeecCCCCCccccc
Q 048829          178 CDRLKKLCAD----MGNLIKLHHLNNSNTDSLEETP  209 (976)
Q Consensus       178 ~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~lp  209 (976)
                      |-.-.+.|..    |++-+.|.||.+++|. ++.+.
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a  136 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA  136 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence            5433444443    5666788888888887 55443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.47  E-value=0.0011  Score=38.56  Aligned_cols=18  Identities=50%  Similarity=0.971  Sum_probs=7.9

Q ss_pred             ccEEecCCCCccccchhh
Q 048829          147 LRYLNLSGTNIRTLPESV  164 (976)
Q Consensus       147 L~~L~L~~n~i~~lp~~i  164 (976)
                      ||+|||++|+++.+|.+|
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            444444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.46  E-value=0.0016  Score=64.01  Aligned_cols=59  Identities=36%  Similarity=0.484  Sum_probs=24.5

Q ss_pred             cCCcccEEEccCC--ccc-cccccccCCCcccEEecCCCCcccc--chhhhccCCccEEecccc
Q 048829          120 KLQRLRVFSLRGY--HIS-ELPDSVGDLRYLRYLNLSGTNIRTL--PESVNKLYNLHSLLLEDC  178 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~--~i~-~lp~~~~~L~~L~~L~L~~n~i~~l--p~~i~~L~~L~~L~L~~~  178 (976)
                      .+++|+.|++|.|  ++. .++-....+++|++|+|++|+|+.+  -.....+.+|..||+.+|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence            4445555555554  222 2222233335555555555544432  012334444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.39  E-value=0.0039  Score=58.68  Aligned_cols=88  Identities=22%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             ccccccCCcccEEEccCCccccccccc-cCCCcccEEecCCCCccccc--hhhhccCCccEEecccccchhccch----h
Q 048829          115 LPKLLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA----D  187 (976)
Q Consensus       115 ~~~~~~l~~Lr~L~Ls~~~i~~lp~~~-~~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~  187 (976)
                      .+.+..++.|..|.|+.|+|+.+-..+ .-+++|..|.|.+|+|..+-  .-+..++.|++|.+-+ +.+...+.    .
T Consensus        57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k~~YR~yv  135 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG-NPVEHKKNYRLYV  135 (233)
T ss_pred             cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC-CchhcccCceeEE
Confidence            344447778888888888888774444 44567888888888777652  3456677888887777 34444332    2


Q ss_pred             hhccccCceeecCCCC
Q 048829          188 MGNLIKLHHLNNSNTD  203 (976)
Q Consensus       188 i~~L~~L~~L~l~~~~  203 (976)
                      +.++++|++||.....
T Consensus       136 l~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EEecCcceEeehhhhh
Confidence            6778888888877654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.10  E-value=0.0032  Score=36.55  Aligned_cols=22  Identities=27%  Similarity=0.616  Sum_probs=18.9

Q ss_pred             cccEEEccCCccccccccccCC
Q 048829          123 RLRVFSLRGYHISELPDSVGDL  144 (976)
Q Consensus       123 ~Lr~L~Ls~~~i~~lp~~~~~L  144 (976)
                      +|++|||++|+++.+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999888764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.00087  Score=65.85  Aligned_cols=59  Identities=31%  Similarity=0.358  Sum_probs=39.0

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccc--hhhhccCCccEEeccccc
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP--ESVNKLYNLHSLLLEDCD  179 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~  179 (976)
                      +|+.|.||.||-|.|+.+ ..+..+++|+.|+|+.|.|..+-  .-+.+|++|++|.|..|.
T Consensus        39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            777777777777777766 45667777777777777776652  234566666666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.00069  Score=66.54  Aligned_cols=101  Identities=21%  Similarity=0.277  Sum_probs=74.0

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchh--hhccccCcee
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD--MGNLIKLHHL  197 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L  197 (976)
                      .+.+.+-|++-|+.+..+ .-..+++.|++|.|+-|.|+.+ ..+..+++|+.|.|.. |.+..+-+-  +.+|++|+.|
T Consensus        17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence            455677788888888876 3457899999999999999988 7788999999999998 567666332  6788888988


Q ss_pred             ecCCCCCccccccc-----cCCCCCCceecc
Q 048829          198 NNSNTDSLEETPLG-----IGKLTCLQTLCN  223 (976)
Q Consensus       198 ~l~~~~~~~~lp~~-----i~~L~~L~~L~~  223 (976)
                      .|..|.-...-+..     +.-|++|+.|+.
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhccC
Confidence            88877644443322     445666666643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.80  E-value=0.0071  Score=59.67  Aligned_cols=106  Identities=23%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCC--Ccc-ccchhhhccCCccEEecccccchhccc--hhhhccccC
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGT--NIR-TLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLIKL  194 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L  194 (976)
                      .+..|..|++.+..++.+ ..+..|++|++|.++.|  .+. .++-...++.+|++|++++ |+++.+-  .....+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcch
Confidence            556666666666666554 45667888888888888  443 4444455668888888888 4665431  125667777


Q ss_pred             ceeecCCCCCcccccc----ccCCCCCCceecceEecC
Q 048829          195 HHLNNSNTDSLEETPL----GIGKLTCLQTLCNFVVGK  228 (976)
Q Consensus       195 ~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~~~~~~  228 (976)
                      ..|+++.|. ...+-.    .|.-|++|..|+...+..
T Consensus       119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hhhhcccCC-ccccccHHHHHHHHhhhhccccccccCC
Confidence            888888877 333321    166678888887665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.36  E-value=0.00093  Score=63.83  Aligned_cols=86  Identities=15%  Similarity=0.183  Sum_probs=72.8

Q ss_pred             ccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCce
Q 048829          117 KLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHH  196 (976)
Q Consensus       117 ~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~  196 (976)
                      ++..++..++||++.|++..+-..|..++.|..||++.|.|..+|..++.+..++.+++.. |..+..|.++++++.+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence            3447778889999998888777788888888999999998888899999888888888877 678888888999999998


Q ss_pred             eecCCCC
Q 048829          197 LNNSNTD  203 (976)
Q Consensus       197 L~l~~~~  203 (976)
                      +++-++.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            8888776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.32  E-value=0.041  Score=50.14  Aligned_cols=117  Identities=11%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             cccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccc-hh
Q 048829           87 DLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLP-ES  163 (976)
Q Consensus        87 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp-~~  163 (976)
                      .|.++++|+.+.+...        ...+....| .++.|+.+.+.++ +..+ ...|.+++.|+.+.+.. .+..++ ..
T Consensus         7 ~F~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~   76 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA   76 (129)
T ss_dssp             TTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred             HHhCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence            3556666776654321        235566666 6667777777664 6655 34566676777777755 455553 34


Q ss_pred             hhccCCccEEecccccchhccchh-hhccccCceeecCCCCCccccccc-cCCCCCC
Q 048829          164 VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNTDSLEETPLG-IGKLTCL  218 (976)
Q Consensus       164 i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L  218 (976)
                      |.+..+|+.+++..  .+..++.. |.+. +|+.+.+..+  +..++.. |.+.++|
T Consensus        77 F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   77 FSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             ccccccccccccCc--cccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            56677777777765  25555443 6665 7777766542  4555444 4444333

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.31  E-value=0.024  Score=30.38  Aligned_cols=15  Identities=40%  Similarity=0.603  Sum_probs=5.2

Q ss_pred             cccEEecCCCCcccc
Q 048829          146 YLRYLNLSGTNIRTL  160 (976)
Q Consensus       146 ~L~~L~L~~n~i~~l  160 (976)
                      +||+|+|++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.57  E-value=0.0054  Score=58.83  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=77.4

Q ss_pred             ccccc-ccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCcccccccc
Q 048829          134 ISELP-DSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGI  212 (976)
Q Consensus       134 i~~lp-~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i  212 (976)
                      ++++| ..+...+.-++||++.|++..+-..|..++.|..||++. +.+..+|.+++.+..++++++..|. ....|.++
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~  107 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ  107 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence            34453 466778899999999999988888899999999999999 7999999999999999999998887 99999999


Q ss_pred             CCCCCCceec
Q 048829          213 GKLTCLQTLC  222 (976)
Q Consensus       213 ~~L~~L~~L~  222 (976)
                      +++++++.++
T Consensus       108 ~k~~~~k~~e  117 (326)
T KOG0473|consen  108 KKEPHPKKNE  117 (326)
T ss_pred             cccCCcchhh
Confidence            9999999874

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.57  E-value=0.046  Score=29.31  Aligned_cols=17  Identities=29%  Similarity=0.604  Sum_probs=11.5

Q ss_pred             CcccEEEccCCcccccc
Q 048829          122 QRLRVFSLRGYHISELP  138 (976)
Q Consensus       122 ~~Lr~L~Ls~~~i~~lp  138 (976)
                      ++||+|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999998876

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.52  E-value=0.16  Score=46.12  Aligned_cols=102  Identities=14%  Similarity=0.290  Sum_probs=63.6

Q ss_pred             ccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccch-hhhccCCccEEecccccchhccchh-h
Q 048829          113 SILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCAD-M  188 (976)
Q Consensus       113 ~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i  188 (976)
                      .++...| +.++|+.+.+.. .+..+ ..+|..+.+|+.+.+.++ +..++. .|.+..+|+.+.+..  .+..++.. |
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F   77 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF   77 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence            3556677 888999999985 57777 567888989999999885 777754 578888999999975  45556544 7


Q ss_pred             hccccCceeecCCCCCccccccc-cCCCCCCcee
Q 048829          189 GNLIKLHHLNNSNTDSLEETPLG-IGKLTCLQTL  221 (976)
Q Consensus       189 ~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L  221 (976)
                      ..+++|+.+++..+  +..++.. +.+. +|+.+
T Consensus        78 ~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i  108 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI  108 (129)
T ss_dssp             TT-TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred             cccccccccccCcc--ccEEchhhhcCC-CceEE
Confidence            78999999999764  5666655 6665 66665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.75  E-value=0.021  Score=54.01  Aligned_cols=88  Identities=19%  Similarity=0.353  Sum_probs=57.4

Q ss_pred             ccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc
Q 048829          818 NLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS  897 (976)
Q Consensus       818 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  897 (976)
                      .++.+|-+++.+.....    ..+.+++.++.|.+..|. ......-+.       .-...++|+.|+|++|+.+++-.-
T Consensus       102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck-~~dD~~L~~-------l~~~~~~L~~L~lsgC~rIT~~GL  169 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCK-YFDDWCLER-------LGGLAPSLQDLDLSGCPRITDGGL  169 (221)
T ss_pred             eEEEEecCCchHHHHHH----HHHhccchhhhheecccc-chhhHHHHH-------hcccccchheeeccCCCeechhHH
Confidence            45666666666665555    457778888888888853 222211110       013568899999999998877644


Q ss_pred             -cccCCCCCCeEeecCCCCcc
Q 048829          898 -SIVDLQNLTKLTLYDCPKLK  917 (976)
Q Consensus       898 -~l~~l~~L~~L~l~~c~~l~  917 (976)
                       ++..+++|+.|.+++.+.+.
T Consensus       170 ~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  170 ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HHHHHhhhhHHHHhcCchhhh
Confidence             67788888888888855443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.62  E-value=0.041  Score=52.14  Aligned_cols=81  Identities=22%  Similarity=0.344  Sum_probs=48.9

Q ss_pred             CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-ccccc-CCCCCcEEEccCCCCCCccCC-CCCCCCCccEE
Q 048829          700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLH-NLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRL  776 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~-~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L  776 (976)
                      .++.+|-+++.+...-.+-+.++++++.|.+.+|.....- -+.++ -.++|+.|+|++|+.+++..- .+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4666777777666666667777777888888877766643 11111 256677777777766654321 12335566666


Q ss_pred             EecC
Q 048829          777 EIYD  780 (976)
Q Consensus       777 ~l~~  780 (976)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.59  E-value=0.16  Score=30.90  Aligned_cols=20  Identities=40%  Similarity=0.622  Sum_probs=12.4

Q ss_pred             CCcccEEecCCCCccccchh
Q 048829          144 LRYLRYLNLSGTNIRTLPES  163 (976)
Q Consensus       144 L~~L~~L~L~~n~i~~lp~~  163 (976)
                      |++|++|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35566666666666666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.59  E-value=0.16  Score=30.90  Aligned_cols=20  Identities=40%  Similarity=0.622  Sum_probs=12.4

Q ss_pred             CCcccEEecCCCCccccchh
Q 048829          144 LRYLRYLNLSGTNIRTLPES  163 (976)
Q Consensus       144 L~~L~~L~L~~n~i~~lp~~  163 (976)
                      |++|++|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35566666666666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.91  E-value=0.53  Score=28.54  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=17.9

Q ss_pred             CCcccEEEccCCccccccccc
Q 048829          121 LQRLRVFSLRGYHISELPDSV  141 (976)
Q Consensus       121 l~~Lr~L~Ls~~~i~~lp~~~  141 (976)
                      +++|++|+|++|+|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            468999999999999997654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.91  E-value=0.53  Score=28.54  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=17.9

Q ss_pred             CCcccEEEccCCccccccccc
Q 048829          121 LQRLRVFSLRGYHISELPDSV  141 (976)
Q Consensus       121 l~~Lr~L~Ls~~~i~~lp~~~  141 (976)
                      +++|++|+|++|+|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            468999999999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	976
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	6e-09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 5e-19
 Identities = 66/305 (21%), Positives = 102/305 (33%), Gaps = 36/305 (11%)

Query: 631 SLKRLDIQRCNKIRTLTVEEGIQS----SSSRRYTSSLLENLAISSCPSLTCIFSKNELP 686
             + L  Q    +R     + +       ++ R         A S+ P +    +   L 
Sbjct: 13  GRENLYFQGSTALRPY--HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR-TGRALK 69

Query: 687 ATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNL 746
           AT + LE    P     L++     L    ++    + L+ + I     L  L   +   
Sbjct: 70  ATADLLEDATQP-GRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQF 126

Query: 747 CQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGL---------HNLTSL 797
             L+ + +     L + P       +LR L I  C  L  LP+ L           L +L
Sbjct: 127 AGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 798 QQLTIIGGELPSL-EEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD 856
           Q L +    + SL        NL SL+I  +      +   G   H    L  L +RGC 
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNS-----PLSALGPAIHHLPKLEELDLRGCT 240

Query: 857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKL 916
             + ++PP    R           L  L +    NL +L   I  L  L KL L  C  L
Sbjct: 241 A-LRNYPPIFGGRA---------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 917 KYFPE 921
              P 
Sbjct: 291 SRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 1e-18
 Identities = 28/109 (25%), Positives = 45/109 (41%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHS 172
               +   L  L+   L    I  LP S+ +L+ L+ L +  + +  L  +++ L  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

Query: 173 LLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
           L L  C  L+      G    L  L   +  +L   PL I +LT L+ L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 6e-18
 Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 41/254 (16%)

Query: 119 LKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDC 178
                     LR   + + PD    L +L+++ +    +  LP+++ +   L +L L   
Sbjct: 78  ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN 137

Query: 179 DRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELK 238
             L+ L A + +L +L  L+      L E P  +                     L  L+
Sbjct: 138 -PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG----------LVNLQ 186

Query: 239 LLMHLRGALEISKLENV-KDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGV 297
            L  L      + + ++   + N         +NLK L +R +  +    +      +  
Sbjct: 187 SL-RLEW----TGIRSLPASIANL--------QNLKSLKIRNSPLSALGPA------IHH 227

Query: 298 LDMLKPHKNLEQFGICGYGG-TKFPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSL 355
           L        LE+  + G      +P   G    + L  L  +DC     LP  + +L  L
Sbjct: 228 L------PKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 356 KHLTVRGVSRVKRL 369
           + L +RG   + RL
Sbjct: 280 EKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 5e-17
 Identities = 58/327 (17%), Positives = 108/327 (33%), Gaps = 43/327 (13%)

Query: 502 SLKSLEIRGCPKLQSLVAE-----EEKDQQQQLCELSCRLEYLR-----LRYCEGLVKLP 551
             ++L  +G   L+             +  +     + R           R    L    
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 552 QS--SLSLSSLKEIEIYKCSSLVSFP-EVALPSKLKKIEIRECDALKSLPEPWMCDTSSS 608
                 +      +E+     L  FP +    S L+ + I     L  LP+  M   +  
Sbjct: 73  DLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPD-TMQQFAG- 128

Query: 609 LEILKIWDCHSLTYI-AEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLEN 667
           LE L +     L  + A +     L+ L I+ C ++  L        +S        L++
Sbjct: 129 LETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 668 LAISSCPSLTCIFSKNELPAT------LESLEVGN-----LPPSV------KVLDVYGCP 710
           L +     +        LPA+      L+SL++ N     L P++      + LD+ GC 
Sbjct: 188 LRLEWT-GIR------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240

Query: 711 KLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPC 770
            L +          L+ + + +C NL  L   +H L QL+++ + GC NL   P      
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 771 AKLRRLEIYDCKRLEALPKGLHNLTSL 797
                + +    + +          + 
Sbjct: 301 PANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 9e-15
 Identities = 53/253 (20%), Positives = 84/253 (33%), Gaps = 56/253 (22%)

Query: 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCD 179
           +L  L+  ++    + ELPD++     L  L L+   +R LP S+  L  L  L +  C 
Sbjct: 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161

Query: 180 RLKKLCADMGN---------LIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDS 230
            L +L   + +         L+ L  L    T  +   P  I  L  L++L      K  
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSL------KIR 214

Query: 231 GSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSRE 290
            S LS L           I  L                   L+EL LR       ++ R 
Sbjct: 215 NSPLSAL--------GPAIHHL-----------------PKLEELDLR-----GCTALRN 244

Query: 291 AETEMGVLDMLKPHKNLEQFGICGYGG-TKFPTWLGDSLFSNLVTLEFEDCGMCTALP-S 348
                G          L++  +         P  +     + L  L+   C   + LP  
Sbjct: 245 YPPIFGGR------APLKRLILKDCSNLLTLPLDIHR--LTQLEKLDLRGCVNLSRLPSL 296

Query: 349 VGQLPSLKHLTVR 361
           + QLP+   + V 
Sbjct: 297 IAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 32/253 (12%)

Query: 712 LESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE------ 765
           + S      +++  E +       L+     L    +          +            
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 766 ---------------GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSL 810
                                    LE+     L   P     L+ LQ +TI    L  L
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMEL 119

Query: 811 -EEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDR 869
            +       L +L +  N      +          + LR L IR C  ++   P      
Sbjct: 120 PDTMQQFAGLETLTLARN-----PLRALPASIASLNRLRELSIRAC-PELTELPEPLAST 173

Query: 870 RLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK-GLPSSL 928
                     +L SL +  +  + SL +SI +LQNL  L + +   L            L
Sbjct: 174 DASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKL 231

Query: 929 LQLRIYRCPLIEE 941
            +L +  C  +  
Sbjct: 232 EELDLRGCTALRN 244

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 121 LQRLRVFSLRGY-HISELPDSVGDLRYLRYLN--------------------LSGTNIRT 159
                    +G   +    D +   +     +                     +G  ++ 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 160 LPESVNKLY--NLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTC 217
             + +         +L L     L +       L  L H+       L E P  + +   
Sbjct: 71  TADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAG 128

Query: 218 LQTL----CNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGK-KNL 272
           L+TL            S + L+ L+ L  +R   E+++L     + +   +       NL
Sbjct: 129 LETLTLARNPLRALPASIASLNRLREL-SIRACPELTELPE--PLASTDASGEHQGLVNL 185

Query: 273 KELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNL 332
           + L L WT      +S      +  L      +NL+   I     +     +       L
Sbjct: 186 QSLRLEWTGIRSLPAS------IANL------QNLKSLKIRNSPLSALGPAIHH--LPKL 231

Query: 333 VTLEFEDCGMCTALP-SVGQLPSLKHLTVRGVSRVKRL 369
             L+   C      P   G    LK L ++  S +  L
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 69/423 (16%), Positives = 112/423 (26%), Gaps = 123/423 (29%)

Query: 159 TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCL 218
           +     +      +L  +    L+     +    + ++ + +   S              
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNNP 58

Query: 219 QTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 278
           Q          +G  L                 LE+                    L LR
Sbjct: 59  QIETR------TGRALKAT-----------ADLLEDATQ------------PGRVALELR 89

Query: 279 WTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFE 338
                      +   +   L       +L+   I   G  + P  +    F+ L TL   
Sbjct: 90  ------SVPLPQFPDQAFRL------SHLQHMTIDAAGLMELPDTMQQ--FAGLETLTLA 135

Query: 339 DCGMCTALP-SVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWE 397
              +  ALP S+  L  L+ L++R    +  L       D+      L  L+   L    
Sbjct: 136 RNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL---- 190

Query: 398 VWISHGSGQGVEGFP-------KLRELHILECPKLRGTFPE---HLPVLEMLVIEGCEEL 447
                    G+   P        L+ L I     L         HLP LE L + GC  L
Sbjct: 191 ------EWTGIRSLPASIANLQNLKSLKIRNS-PLS-ALGPAIHHLPKLEELDLRGCTAL 242

Query: 448 LVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLE 507
                + P     + GG                                      LK L 
Sbjct: 243 ----RNYPP----IFGGRA-----------------------------------PLKRLI 259

Query: 508 IRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYK 567
           ++ C  L +L  +        +  L+ +LE L LR C  L +LP     L +   I +  
Sbjct: 260 LKDCSNLLTLPLD--------IHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 568 CSS 570
              
Sbjct: 311 HLQ 313

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 80.3 bits (197), Expect = 2e-15
 Identities = 84/512 (16%), Positives = 167/512 (32%), Gaps = 126/512 (24%)

Query: 484 VCRDTSNQSHDGLLQDICSLKSLEI------RGCPKLQSLVAEEEKDQQQQLCELSCRLE 537
           V R    Q +  L Q +  L+  +        G  K   +  +     + Q C++  ++ 
Sbjct: 131 VSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQ-CKMDFKIF 185

Query: 538 YLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSL 597
           +L L+ C     + +    L  L +I+    S       + L     + E+R     K  
Sbjct: 186 WLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 598 PEPWMCDTSSSLEILK-IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTL--TVEEGIQS 654
                      L +L  + +       A+          ++  C   + L  T  + +  
Sbjct: 244 EN--------CLLVLLNVQN-------AKA-----WNAFNLS-C---KILLTTRFKQVTD 279

Query: 655 S-SSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES---LEVGNLPPSVKVLDVYGCP 710
             S+   T   L++ +++         + +E+ + L         +LP  V        P
Sbjct: 280 FLSAATTTHISLDHHSMT--------LTPDEVKSLLLKYLDCRPQDLPREVLT----TNP 327

Query: 711 KLES-IAERL-DNNTSLETINISNCENL-KILSSGLHNLC------QLQQIGIGGCGNLE 761
           +  S IAE + D   + +     NC+ L  I+ S L+ L          ++ +       
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV------- 380

Query: 762 SFPEG-GLPCAKLRRL---EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPT 817
            FP    +P   L  +    I     +      LH   SL            +E+    +
Sbjct: 381 -FPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKY-SL------------VEKQPKES 424

Query: 818 --NLHSLRIEGNMGIWKSMIERGRGFHRFSSL--RYLLIRGCDDDMVSFPPEPEDRRLGT 873
             ++ S+ +E      K  +E     HR  S+   Y + +  D D     P   D+   +
Sbjct: 425 TISIPSIYLE-----LKVKLENEYALHR--SIVDHYNIPKTFDSD--DLIPPYLDQYFYS 475

Query: 874 TLP--LPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKY-----FPEKGLPS 926
            +   L        +  F  +       +D + L +       K+++          + +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMV------FLDFRFLEQ-------KIRHDSTAWNASGSILN 522

Query: 927 SLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIP 958
           +L QL+ Y+ P I +   K       +L  +P
Sbjct: 523 TLQQLKFYK-PYICDNDPKYERLVNAILDFLP 553

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 3e-05
 Identities = 31/233 (13%), Positives = 66/233 (28%), Gaps = 79/233 (33%)

Query: 2   EKTGEDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNK 61
           +    D+ + +  +LH  S  ++   + S   +  +  +L                   K
Sbjct: 398 DVIKSDV-MVVVNKLHKYSLVEKQPKE-STISIPSIYLEL-------------------K 436

Query: 62  QQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKL 121
            +  + Y  H S +  Y          +D   L       +      Y            
Sbjct: 437 VKLENEYALHRSIVDHY-----NIPKTFDSDDL-------IPPYLDQY------------ 472

Query: 122 QRLRVFSLRGYHIS--ELPDSVGDLRYLRYLNL---------SGTNIRTLPESVN----- 165
                +S  G+H+   E P+ +   R + +L+            T        +N     
Sbjct: 473 ----FYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 166 KLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCL 218
           K Y  +  + ++  + ++L   + + +              E  L   K T L
Sbjct: 528 KFYKPY--ICDNDPKYERLVNAILDFLPKI-----------EENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-05
 Identities = 87/544 (15%), Positives = 155/544 (28%), Gaps = 199/544 (36%)

Query: 109 YLAPSILPKLLKLQRLRVFS----LRGYHISELPDSVGDLR-YLRYLNLSGTNIRTLPES 163
              PS++ ++   QR R+++       Y++S        LR  L  L     N+      
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELR-PAKNV------ 153

Query: 164 VNKLYNLH--------SLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKL 215
                 +          + L+ C   K  C  M   I    LN  N +S E     + KL
Sbjct: 154 -----LIDGVLGSGKTWVALDVCLSYKVQCK-MDFKI--FWLNLKNCNSPETVLEMLQKL 205

Query: 216 TCLQTLCNFVVGKDSGSGL--------SELKLLMHLRG---ALEISKLENVKD------- 257
              Q   N+    D  S +        +EL+ L+  +     L +  L NV++       
Sbjct: 206 -LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNAF 262

Query: 258 --------------------VGNAKEARLD------GKKNLKELLLRWTRSTDGSSSREA 291
                                       LD          +K LLL++         RE 
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 292 ET----EMGVL-DMLKPH----KNLEQFGICGYGGTKFPTWLGDSLFSNLVTLE----FE 338
            T     + ++ + ++       N +          K  T +  SL + L   E    F+
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIESSL-NVLEPAEYRKMFD 376

Query: 339 DCGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEV 398
              +          P                        + IP   L  +       W  
Sbjct: 377 RLSV---------FP----------------------PSAHIPTILLSLI-------WF- 397

Query: 399 WISHGSGQGVEGFPKLRELH---ILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLP 455
                    V     + +LH   ++E      T    +P + +       EL V + +  
Sbjct: 398 ---DVIKSDVMVV--VNKLHKYSLVEKQPKESTI--SIPSIYL-------ELKVKLENEY 443

Query: 456 ALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICS-----LKSLEIRG 510
           AL + ++                  N     D+ +     L Q   S     LK++E   
Sbjct: 444 ALHRSIV---------------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--- 485

Query: 511 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLS-------LSSLKEI 563
                     E     + +        +L  R+ E   K+   S +       L++L+++
Sbjct: 486 --------HPERMTLFRMV--------FLDFRFLEQ--KIRHDSTAWNASGSILNTLQQL 527

Query: 564 EIYK 567
           + YK
Sbjct: 528 KFYK 531

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 67.6 bits (165), Expect = 1e-11
 Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 26/168 (15%)

Query: 6   EDLGLEIFKELHSRSFFQQSSND-ASRFVMHDLINDLAHWAAGEIYFTMEYTSEVNKQQS 64
            +   +I +E  ++S      N  + R+ +HDL  D       +    ++       ++ 
Sbjct: 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF---LTEKNCSQLQD----LHKKI 460

Query: 65  FSRYLRHLSYIPEYYVGGKRFGDLYDIQHL----------RTFLPVMLTDSSPGYLAPSI 114
            +++ R+      + +   +   +Y    L          +    +M    S  ++    
Sbjct: 461 ITQFQRYHQP---HTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMF---SLDWIKAKT 514

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPE 162
             +L+    L    +   HI +  D      +  +L+L+G  +   P 
Sbjct: 515 --ELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPF 560

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 64/408 (15%), Positives = 121/408 (29%), Gaps = 69/408 (16%)

Query: 535 RLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDAL 594
            L  L       +  +      L+ L ++     + + +         L  +       L
Sbjct: 43  TLTSLDCHNS-SITDMTGIE-KLTGLTKLICTSNN-ITTLDLSQNT-NLTYLACDSNK-L 97

Query: 595 KSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQS 654
            +L         + L  L       LT +   Q P  L  L+  R N +  + V    Q 
Sbjct: 98  TNLD----VTPLTKLTYLNCDTNK-LTKLDVSQNP-LLTYLNCAR-NTLTEIDVSHNTQL 150

Query: 655 SSSRRYTSSLLENLAISSCPSLTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLE 713
           +    + +  +  L ++    LT +  S N++      L+V      +  L+      + 
Sbjct: 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKI----TELDVSQNK-LLNRLNCDTN-NIT 204

Query: 714 SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773
            +   L+ N  L  ++ S+    K+    +  L QL          L       L   KL
Sbjct: 205 KLD--LNQNIQLTFLDCSSN---KLTEIDVTPLTQLTYFDCSVN-PLTELDVSTLS--KL 256

Query: 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKS 833
             L       L  +   L + T L      G       +    T L+ L  +   GI  +
Sbjct: 257 TTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA-GI--T 310

Query: 834 MIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLE 893
            ++      +   L YL +                            LT L ++    L+
Sbjct: 311 ELD----LSQNPKLVYLYLNNT------------------------ELTELDVSHNTKLK 342

Query: 894 SLS------SSIVDLQNLTKLTLYDC--PKLKYFPEKGLPSSLLQLRI 933
           SLS           +  +  L        +    P++ L ++ L + +
Sbjct: 343 SLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.7 bits (158), Expect = 7e-11
 Identities = 49/353 (13%), Positives = 120/353 (33%), Gaps = 61/353 (17%)

Query: 502 SLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCE-------GLVKLPQSS 554
           ++ +L++     L  L  +  K     +  L+ +L YL     +           L   +
Sbjct: 75  NITTLDLSQNTNLTYLACDSNKLTNLDVTPLT-KLTYLNCDTNKLTKLDVSQNPLLTYLN 133

Query: 555 LSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSS-SLEILK 613
            + ++L EI++   + L    +  L  K+ K+++     L +L      D S   +  L 
Sbjct: 134 CARNTLTEIDVSHNTQLTEL-DCHLNKKITKLDVTPQTQLTTL------DCSFNKITELD 186

Query: 614 IWDCHSLTYIAEVQLPLS---LKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAI 670
           +     L       L      + +LD+ +  ++  L              +S+ L  + +
Sbjct: 187 VSQNKLLNR-----LNCDTNNITKLDLNQNIQLTFLDC------------SSNKLTEIDV 229

Query: 671 SSCPSLTCIF-SKNEL-------PATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNN 722
           +    LT    S N L        + L +L        +  +D+    +L     + +  
Sbjct: 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD--LLEIDLTHNTQLIYF--QAEGC 285

Query: 723 TSLETINISNCENLKILSSG--------LHNLCQLQQIGIGGCGNLESFPEGGLPCAKLR 774
             ++ +++++   L +L           L    +L  + +     L           KL+
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELDVSHNT--KLK 342

Query: 775 RLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGN 827
            L   +   ++     +  + +L       G+  ++ ++ L  N  ++ +  +
Sbjct: 343 SLSCVNAH-IQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 3e-09
 Identities = 62/333 (18%), Positives = 105/333 (31%), Gaps = 55/333 (16%)

Query: 610 EILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRY---TSSLLE 666
           E+   ++  +   I+E QL  +L  LD    + I  +T   GI+  +       TS+ + 
Sbjct: 23  EVAAAFEMQATDTISEEQLA-TLTSLDCHN-SSITDMT---GIEKLTGLTKLICTSNNIT 77

Query: 667 NLAISSCPSLTCIF-SKNELPATLESLEVGNLP---------PSVKVLDVYGCPKLESIA 716
            L +S   +LT +    N+L     +L+V  L            +  LDV   P L  + 
Sbjct: 78  TLDLSQNTNLTYLACDSNKL----TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYL- 132

Query: 717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLE----------SFPEG 766
                N +L  I++S+   L  L    H   ++ ++ +     L                
Sbjct: 133 -NCARN-TLTEIDVSHNTQLTELD--CHLNKKITKLDVTPQTQLTTLDCSFNKITELDVS 188

Query: 767 GLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEG 826
                 L RL       +  L   L+    L  L     +L  ++   L T L       
Sbjct: 189 QNK--LLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTEIDVTPL-TQLTYFDCSV 242

Query: 827 NMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSI 886
           N     + ++        S L  L     D   +      +             +  L +
Sbjct: 243 NP---LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF--QAEGCRKIKELDV 293

Query: 887 AFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYF 919
                L  L         +T+L L   PKL Y 
Sbjct: 294 THNTQLYLLD---CQAAGITELDLSQNPKLVYL 323

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 38/277 (13%), Positives = 75/277 (27%), Gaps = 66/277 (23%)

Query: 689 LESLEVGNLPPSVKVLDVYGCPKLESIA--------ERLD-NNTSLETINISNCENLKIL 739
            +++    L  ++  LD +    +  +          +L   + ++ T+++S   NL  L
Sbjct: 33  TDTISEEQLA-TLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYL 90

Query: 740 SSG--------LHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGL 791
           +          +  L +L  +       L        P   L  L       L  +   +
Sbjct: 91  ACDSNKLTNLDVTPLTKLTYLNCDTN-KLTKLDVSQNP--LLTYLNCARNT-LTEID--V 144

Query: 792 HNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLL 851
            + T L +L     +  +  +    T L +L    N     + ++      +   L  L 
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN---KITELD----VSQNKLLNRLN 197

Query: 852 IRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESL--------SSSIVDLQ 903
                                       ++T L +     L  L           +  L 
Sbjct: 198 CDTN------------------------NITKLDLNQNIQLTFLDCSSNKLTEIDVTPLT 233

Query: 904 NLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIE 940
            LT         L       L   L  L   +  L+E
Sbjct: 234 QLTYFDCSVN-PLTELDVSTLS-KLTTLHCIQTDLLE 268

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 40/222 (18%), Positives = 65/222 (29%), Gaps = 34/222 (15%)

Query: 710 PKLESIAERLDNNTSLETINISNCENLKILS---------SGLHNLCQLQQIGIGGCGNL 760
               S         + +TI+      L  L          +G+  L  L ++      N+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NI 76

Query: 761 ESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLH 820
            +          L  L     K L  L   +  LT L  L     +L  L+    P  L 
Sbjct: 77  TTLDLSQNT--NLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNP-LLT 130

Query: 821 SLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPA- 879
            L    N     + I+        + L  L         ++        +L TTL     
Sbjct: 131 YLNCARNTL---TEID----VSHNTQLTELDCHLN--KKITKLDVTPQTQL-TTLDCSFN 180

Query: 880 SLTSLSIAFFPNLESLSSSIVDLQN--LTKLTLYDCPKLKYF 919
            +T L ++    L  L     +     +TKL L    +L + 
Sbjct: 181 KITELDVSQNKLLNRL-----NCDTNNITKLDLNQNIQLTFL 217

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 9/104 (8%)

Query: 118 LLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLED 177
           L +  +L         ++E+   V  L  L Y + S   +  L  S      L +L    
Sbjct: 208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS--KLTTLHCIQ 263

Query: 178 CDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
              L ++  D+ +  +L +        +    L +   T L  L
Sbjct: 264 T-DLLEI--DLTHNTQLIYFQAEGCRKI--KELDVTHNTQLYLL 302

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCD 179
           +L  L         I+++   +  L  L  L  +  NI TL   +++  NL  L  +   
Sbjct: 40  QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN- 95

Query: 180 RLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
           +L  L  D+  L KL +LN         T L + +   L  L
Sbjct: 96  KLTNL--DVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYL 132

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.3 bits (159), Expect = 6e-11
 Identities = 72/499 (14%), Positives = 137/499 (27%), Gaps = 96/499 (19%)

Query: 353 PSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFP 412
           P ++ + ++G                                 W  ++          + 
Sbjct: 66  PKVRSVELKGKPHFADFNLV--------------------PDGWGGYVYPWIEAMSSSYT 105

Query: 413 KLRELHILECP---KLRGTFPEHLPVLEMLVIEGCEEL-LVSVLSLPALCKFL----IGG 464
            L E+ +              +     ++LV+  CE      + ++ A C+ L    +  
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 465 CKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKD 524
                                 D S            SL SL I       S  A E   
Sbjct: 166 SD------------------VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE--- 204

Query: 525 QQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLK 584
              +L      L+ L+L     L KL         L+E+     ++ V     +  S   
Sbjct: 205 ---RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA- 260

Query: 585 KIEIRECDALKSLPEPW---------MCDTSSSLEILKIWDCHSLTY--IAEVQLPLSLK 633
              +  C  L+ L   W         +    S L  L +      +Y  +  +     L+
Sbjct: 261 ---LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317

Query: 634 RLDI-------------QRCNKIRTLTVE--EGIQSSSSRRYTSSLLENLAISSCPSLTC 678
           RL +               C  +R L V   E      +   T   L +++   CP L  
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS-MGCPKLES 376

Query: 679 IFSKN---------ELPATLESLEVGNLPPSVKVLDVYGCPKL--ESIAERLDNNTSLET 727
           +              +     ++    L         Y   +         +++   L  
Sbjct: 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436

Query: 728 INISNCENLKILSSGLHNLCQLQQIGIGGCGN-LESFPEGGLPCAKLRRLEIYDCKRL-E 785
           +++S     K+         +++ + +   G+           C  LR+LEI DC    +
Sbjct: 437 LSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496

Query: 786 ALPKGLHNLTSLQQLTIIG 804
           AL      L +++ L +  
Sbjct: 497 ALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 68/452 (15%), Positives = 137/452 (30%), Gaps = 50/452 (11%)

Query: 482 SVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKL--QSLVAEEEKDQQQQLCELSCR---- 535
            V   +    S   +++    ++S+E++G P     +LV +          E        
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106

Query: 536 LEYLRLRYC----EGLVKLPQSSLSLSSLKEIEIYKCSSL--VSFPEVALP-SKLKKIEI 588
           LE +RL+      + L  +   + S  + K + +  C          +A     LK++++
Sbjct: 107 LEEIRLKRMVVTDDCLELI---AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 589 RECDALKSLPEPW--MCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTL 646
           RE D             DT +SL  L I    S    +      +L+RL + RC  +++L
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS------ALERL-VTRCPNLKSL 216

Query: 647 TVEEGIQSSSSRRYTSSL--LENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVL 704
            +   +              LE L      +       + L   L           ++ L
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC------KELRCL 270

Query: 705 DVYGCPKLESIAERLDNNTSLETINISNCENL-KILSSGLHNLCQLQQIGIGGCGNLESF 763
             +       +       + L T+N+S        L   L    +LQ++ +         
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

Query: 764 PEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLR 823
                 C  LR L ++  +     P        L     +    P LE   +      + 
Sbjct: 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS---VSMGCPKLES--VLYFCRQMT 385

Query: 824 IEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFP-PEPEDRRLGTTLPLPASLT 882
               + I ++            ++    +   +     +   EP D   G  +     L 
Sbjct: 386 NAALITIARNR----------PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435

Query: 883 SLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP 914
            LS++     +         + +  L++    
Sbjct: 436 RLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG 467

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 61/398 (15%), Positives = 131/398 (32%), Gaps = 59/398 (14%)

Query: 554 SLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIREC----------DALKSLPEPWMC 603
            +     +++ I  C ++     +    K++ +E++            D       PW+ 
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 604 DTSS---SLEILKIWDC----HSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSS 656
             SS    LE +++         L  IA+     + K L +  C    T    +G+ + +
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAK-SFK-NFKVLVLSSCEGFST----DGLAAIA 152

Query: 657 SRRYTSSLLENLAISSCP----SLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKL 712
           +       L+ L +        S   +    +   +L SL +  L   V          L
Sbjct: 153 AT---CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA------L 203

Query: 713 ESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNL---ESFPEGGLP 769
           E +  R     +L+++ ++    L+ L++ L    QL+++G GG       + +    + 
Sbjct: 204 ERLVTRC---PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260

Query: 770 CAKLRRLEIYDCKR------LEALPKGLHNLTSL--QQLTIIGGELPSLEEDGLPTNLHS 821
            +  + L             L A+      LT+L     T+   +L  L        L  
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC--PKLQR 318

Query: 822 LRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASL 881
           L +   +     +            LR L +   +  ++       ++ L +       L
Sbjct: 319 LWVLDYIED-AGLEVLASTCK---DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374

Query: 882 TSLSIAFFPNL--ESLSSSIVDLQNLTKLTLYDCPKLK 917
            S+ + F   +   +L +   +  N+T+  L       
Sbjct: 375 ESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 3e-10
 Identities = 69/421 (16%), Positives = 141/421 (33%), Gaps = 45/421 (10%)

Query: 535 RLEYLRLRYCEGLVKLPQSSL-SLSSLKEIEIYKCSSLVSFPEVALP--SKLKKIEIREC 591
            L+ L L+    +  +   +  SL SL+ +++     L S         S LK + +   
Sbjct: 51  NLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN 108

Query: 592 DALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAE---VQLPLSLKRLDIQRCNKIRTLTV 648
              ++L    +    ++L+ L+I +  + + I       L  SL  L+I+    +R    
Sbjct: 109 P-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKA-LSLRNYQ- 164

Query: 649 EEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYG 708
            + ++S     + +  L     +    +      +     +  LE+ +   ++       
Sbjct: 165 SQSLKSIRDIHHLT--LHLSESAFLLEIFADILSS-----VRYLELRDT--NLARFQFSP 215

Query: 709 CPKLESIAE-RLDNNTSLETINISNCENLKILSSGLHNL------CQLQQIGIGGCGNLE 761
            P  E  +  +          + S  E LK+L   L         C L  +G       +
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 762 SFPEGG-LPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG---GELPSLEEDGLPT 817
              E G +    +RRL I        L      L  ++++T+       +P      L  
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK- 334

Query: 818 NLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPL 877
           +L  L +  N  + +  ++       + SL+ L++       +              L L
Sbjct: 335 SLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG-------EILLTL 386

Query: 878 PASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCP 937
             +LTSL I+       +  S    + +  L L     ++      +P +L  L +    
Sbjct: 387 K-NLTSLDIS-RNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNNN 442

Query: 938 L 938
           L
Sbjct: 443 L 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 5e-10
 Identities = 52/401 (12%), Positives = 130/401 (32%), Gaps = 53/401 (13%)

Query: 493 HDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELS---CRLEYLRLRYCEGLVK 549
                  + SL  LEI+    L++    +     + +  L+       +L   + + L  
Sbjct: 140 RRIDFAGLTSLNELEIKAL-SLRNY-QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 550 LPQSSLSLSSLKEIEIYKCSSLVSFPEVALPS-KLKKIEIRECDALKSLPEPWMCDTSSS 608
           +    L  ++L   +            +   + +   +     + L  L    +  +   
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 609 LEILKI--------WDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRY 660
            +   +         +   ++ + +V+  ++++RL I +   +          S+     
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVET-VTIRRLHIPQ-FYLFY------DLSTVYSLL 309

Query: 661 TS-----------SLLENLAISSCPSLTCI-FSKNELPA-TLESLEVGNLPPSVKVLDVY 707
                         L+         SL  +  S+N +    L++       PS++ L + 
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 708 GCP--KLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE 765
                 ++   E L    +L +++IS       +        +++ + +     +     
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKT 427

Query: 766 GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIE 825
                  L  L++ +   L++       L  LQ+L I   +L +L +  L   L  ++I 
Sbjct: 428 CIPQ--TLEVLDVSNN-NLDSFSL---FLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481

Query: 826 GNMGIWKSMIERGRGFHRFSSLRYLLIRG----CDDDMVSF 862
            N  +    +  G  F R +SL+ + +      C    + +
Sbjct: 482 RN-QL--KSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 69/352 (19%), Positives = 125/352 (35%), Gaps = 38/352 (10%)

Query: 606 SSSLEILKIWDCHS--LTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTS- 662
           S S +   + D  S   T I    L  ++K LD+   NKI        I     R   + 
Sbjct: 1   SLSCDASGVCDGRSRSFTSIPS-GLTAAMKSLDLSF-NKITY------IGHGDLRACANL 52

Query: 663 ----------SLLENLAISSCPSLTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCPK 711
                     + +E  A  S  SL  +  S N L ++L S   G L  S+K L++ G   
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLS-SLKYLNLMGN-P 109

Query: 712 LESIAER--LDNNTSLETINISNCENLKILSSG-LHNLCQLQQIGIGGCGNLESFPEGGL 768
            +++       N T+L+T+ I N E    +       L  L ++ I    +L ++    L
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSL 168

Query: 769 -PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLP-----TNLHSL 822
                +  L ++  +    L      L+S++ L +    L   +   LP     + +  L
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 823 RIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPA-SL 881
              G++   +S  E  +       L  +    C  + +      E   +     +   ++
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 882 TSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRI 933
             L I  F     LS+    L+ + ++T+ +  K+   P       L  L  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPC-SFSQHLKSLEF 338

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 86/541 (15%), Positives = 169/541 (31%), Gaps = 110/541 (20%)

Query: 118 LLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLL 175
           L     L+V  L+   I+ +       L  L +L+LS  ++ +L  S    L +L  L L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 176 EDCDRLKKL--CADMGNLIKLHHLNNSNTDSLEETPLG-IGKLTCLQTL---CNFVVGKD 229
                 + L   +   NL  L  L   N ++  E        LT L  L      +    
Sbjct: 106 MGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 230 SGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSR 289
           S S L  ++ + HL   L +S+   + ++        D   +++ L LR           
Sbjct: 165 SQS-LKSIRDIHHLT--LHLSESAFLLEIF------ADILSSVRYLELR----------- 204

Query: 290 EAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSV 349
                           NL +F        +  + +    F   V  +     +   L  +
Sbjct: 205 --------------DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 350 GQLPSLK--HLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQG 407
            +L  ++    T+ G+       S+   +   +    +  L           + +     
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY-----LFYDLSTV 305

Query: 408 VEGFPKLRELHILECP--KLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGC 465
                K++ + +       +  +F +HL  LE              L L           
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLE-------------FLDL----------- 341

Query: 466 KKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQ 525
                        S+N +V     N +  G      SL++L +     L+S+     +  
Sbjct: 342 -------------SENLMVEEYLKNSACKGAWP---SLQTLVLSQN-HLRSM-----QKT 379

Query: 526 QQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKK 585
            + L  L   L  L +        +P S      ++ + +     +       +P  L+ 
Sbjct: 380 GEILLTLK-NLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEV 435

Query: 586 IEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRT 645
           +++   + L S            L+ L I     L  + +  L   L  + I R N++++
Sbjct: 436 LDVSNNN-LDSFSLF-----LPRLQELYISRNK-LKTLPDASLFPVLLVMKISR-NQLKS 487

Query: 646 L 646
           +
Sbjct: 488 V 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 69/432 (15%), Positives = 128/432 (29%), Gaps = 47/432 (10%)

Query: 493 HDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELS----CRLEYLRLRYCEGLV 548
                  + SLK L + G    Q+L           L  L          +R     GL 
Sbjct: 90  SSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 549 KLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPS-KLKKIEIRECDALKSLPEPWMCDTSS 607
            L +  +   SL+  +     S+     + L   +   +     D L S+    + DT+ 
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN- 207

Query: 608 SLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLEN 667
            L   +          + ++  L+ +   +   +    L +   I   S   +    L  
Sbjct: 208 -LARFQFSPLPVDEVSSPMKK-LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 668 L---------AISSCPSLTCI------FSKNELPATLESLEVGNLPPSVKVLDVYGCPKL 712
           L          +S    +  +        +  L   L +  V +L   VK + V    K+
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST--VYSLLEKVKRITVENS-KV 322

Query: 713 ESIAER-LDNNTSLETINISNC---ENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL 768
             +      +  SLE +++S     E     S+       LQ + +    +L S  + G 
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGE 381

Query: 769 PCAKLRRLEIYDCK--RLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEG 826
               L+ L   D        +P        ++ L +    +  ++   +P  L  L +  
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK-TCIPQTLEVLDVSN 440

Query: 827 NMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPA-SLTSLS 885
           N                   L+ L I      + + P       L   + +    L S+ 
Sbjct: 441 N--------NLDSFSLFLPRLQELYISRNK--LKTLPDASLFPVL-LVMKISRNQLKSVP 489

Query: 886 IAFFPNLESLSS 897
              F  L SL  
Sbjct: 490 DGIFDRLTSLQK 501

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 53/277 (19%), Positives = 92/277 (33%), Gaps = 59/277 (21%)

Query: 672 SCPSL-TCIFSKNEL---PATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNN--TSL 725
           SC +   C          P+         L  ++K LD             L  N  T +
Sbjct: 3   SCDASGVCDGRSRSFTSIPS--------GLTAAMKSLD-------------LSFNKITYI 41

Query: 726 ETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLE 785
              ++  C NL++L   L +  ++  I      +L S          L  L++ D   L 
Sbjct: 42  GHGDLRACANLQVLI--LKS-SRINTIEGDAFYSLGS----------LEHLDLSDN-HLS 87

Query: 786 ALPKG-LHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLR---IEGNMGIWKSMIERGRGF 841
           +L       L+SL+ L ++G    +L    L  NL +L+   I        S I R   F
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF--SEIRRI-DF 144

Query: 842 HRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVD 901
              +SL  L I+     + ++          +   +   +  L++    +   L      
Sbjct: 145 AGLTSLNELEIKAL--SLRNYQS-------QSLKSIR-DIHHLTLHLSESAFLLEIFADI 194

Query: 902 LQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPL 938
           L ++  L L D   L  F    LP   +   + +   
Sbjct: 195 LSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAF 230

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 4e-10
 Identities = 41/339 (12%), Positives = 98/339 (28%), Gaps = 49/339 (14%)

Query: 607 SSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLE 666
           + LE+L +   H       +  P  +         +   +  ++       R   S L++
Sbjct: 105 TELEVLAL-GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 667 NLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLE 726
           +        +     +  +  +        +      +       +  +++ +   T L 
Sbjct: 164 D-------CINSDPQQKSIKKSS------RITLKDTQIGQLSN-NITFVSKAVMRLTKLR 209

Query: 727 TINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEA 786
              + N   +             +          ++          L  +E+Y+C  L  
Sbjct: 210 QFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 787 LPKGLHNLTSLQQL----------TIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIE 836
           LP  L  L  +Q +            +  +  +L +  +   +  + I  N  +    +E
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVE 323

Query: 837 RGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPN-LESL 895
                 +   L  L        +    P       G +      L SL++A+  N +  +
Sbjct: 324 --TSLQKMKKLGMLECLYN--QLEGKLPA-----FG-SEI---KLASLNLAY--NQITEI 368

Query: 896 SSSIV-DLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRI 933
            ++     + +  L+     KLKY P      S+  +  
Sbjct: 369 PANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSA 406

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 69/467 (14%), Positives = 125/467 (26%), Gaps = 110/467 (23%)

Query: 507 EIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIY 566
            +    KL+           + +CE     E     Y +          +L  L ++E+Y
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEA---WENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 567 KCSSLVSFP-EVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAE 625
            C +L   P  +    +++ I +       S  +          + L           A+
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACN-RGISGEQL-----KDDWQAL-----------AD 300

Query: 626 VQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENL------------AISSC 673
             +   ++ + I   N ++T  VE  +Q           L  L            A  S 
Sbjct: 301 APVGEKIQIIYIGY-NNLKTFPVETSLQKMKK-------LGMLECLYNQLEGKLPAFGSE 352

Query: 674 PSLTCI-FSKN---ELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLD--NNTSLET 727
             L  +  + N   E+PA       G     V+ L      KL+ I    D  + + +  
Sbjct: 353 IKLASLNLAYNQITEIPANF----CGFT-EQVENLSFAHN-KLKYIPNIFDAKSVSVMSA 406

Query: 728 INISN-------CENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL-PCAKLRRLEIY 779
           I+ S         +N   L         +  I +     +  FP+      + L  + + 
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLM 465

Query: 780 DCK-------RLEALPKGLHNLTSLQQL------------TIIGGELPSLEE-------- 812
                      L+   +   N   L  +                  LP L          
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 813 DGLP------TNLHSLRIEGNMGIWKSMIERG--RGFHRFSSLRYLLIRGCDDDMVSFPP 864
              P      + L    I        +   R    G     SL  L I     D+     
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN--DIRKVNE 583

Query: 865 EPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLY 911
           +           +  +++ L I   PN+    S +          L+
Sbjct: 584 K-----------ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV-NKLYNLH 171
            +   L K+++L +       +     + G    L  LNL+   I  +P +       + 
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 172 SLLLEDCDRLKKL--CADMGNLIKLHHLNNSN-------TDSLEETPLGIGKLTCLQTL 221
           +L      +LK +    D  ++  +  ++ S          + +       K   + ++
Sbjct: 381 NLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 17/123 (13%), Positives = 31/123 (25%), Gaps = 14/123 (11%)

Query: 112 PSILPKLLKLQRLRVF-----SLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPES--V 164
             +      L  + +       +    + +  ++  +   L  ++L    +  L +    
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 165 NKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSL------EETPLGIGKLTCL 218
             L  L  + L       K      N   L      N           E P GI     L
Sbjct: 510 TTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 219 QTL 221
             L
Sbjct: 569 TQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 13/124 (10%)

Query: 107 PGYLAPSILPKLLKLQRLRVFSLRGYHISELPDS--VGDLRYLRYLNLSGTNIRTLPESV 164
           P                L    LR   +++L D      L YL  ++LS  +    P   
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532

Query: 165 NKLYNLHSLLLEDCDRL------KKLCADMGNLIKLHHLN-NSNTDSLEETPLGIGKLTC 217
                L    + +          ++    +     L  L   SN   + +    I     
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN--DIRKVNEKI--TPN 588

Query: 218 LQTL 221
           +  L
Sbjct: 589 ISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 8/112 (7%)

Query: 118 LLKLQRLRVFSLRGYHIS-ELPDSVGDLRYLRYLNLSGTNIR-----TLPESVNKLYNLH 171
           L    R+   SL G+  S  +PD++G L  L  L L     +       P+ ++   +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 172 SLLLEDCDRLKKLCADMGNLI--KLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
                     K             L     ++    +              +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 18/123 (14%)

Query: 115 LPKLLKLQRLRVF-----SLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP-ESVNKLY 168
              +  +  +        S+ G +   L  +      +  +NLS   I   P E  +   
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 169 NLHSLLLEDC-------DRLKKLCADMGNLIKLHHLN-NSNTDSLEETP--LGIGKLTCL 218
            L S+ L          + LK    +  N   L  ++   N   L +         L  L
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN--KLTKLSDDFRATTLPYL 515

Query: 219 QTL 221
             +
Sbjct: 516 VGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 24/228 (10%), Positives = 62/228 (27%), Gaps = 34/228 (14%)

Query: 140 SVGDLRYLRYLNLSGTNIR-TLPESVNKLYNLHSLLL----EDCDRLKKLCADMGNLIKL 194
           S+     +  L+L G      +P+++ +L  L  L L    E  +        +   +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 195 HHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEIS--KL 252
                      +       +      + + +        + +   +      +      +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 253 ENV-KDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFG 311
             V K V             L++  +  +     + +     E    +  + +K      
Sbjct: 196 TFVSKAVMRL--------TKLRQFYMGNSPFV--AENICEAWENENSEYAQQYKTE---- 241

Query: 312 ICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHL 358
                         +    +L  +E  +C   T LP  +  LP ++ +
Sbjct: 242 ---------DLKWDN--LKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 5e-10
 Identities = 48/342 (14%), Positives = 99/342 (28%), Gaps = 55/342 (16%)

Query: 607 SSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLE 666
           + L++L     HS T    +     L     +       +  ++       R   S LL+
Sbjct: 347 TELKVLSF-GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 667 NLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLE 726
           +  I+  P +  I   + +  +L+  ++GNL             ++  I++ +   T L+
Sbjct: 406 DA-INRNPEMKPIKKDSRI--SLKDTQIGNLTN-----------RITFISKAIQRLTKLQ 451

Query: 727 TINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEA 786
            I  +N       +  +                 E+          L  +E+Y+C  +  
Sbjct: 452 IIYFANS-PFTYDNIAVDWEDANSD----YAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 787 LPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS 846
           LP  L++L  LQ L                 N+   R      +                
Sbjct: 507 LPDFLYDLPELQSL-----------------NIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 847 LRYLLIRGCDDDMVSFPPEPEDRRLG------------TTLPLPASLTSLSIAFFPN--L 892
           ++   +     ++  FP     +++               L    +   L+        +
Sbjct: 550 IQIFYMGYN--NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI 607

Query: 893 ESLSSSI-VDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRI 933
           E +          +  L      KLKY P      S+  +  
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGS 648

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 7e-09
 Identities = 53/404 (13%), Positives = 105/404 (25%), Gaps = 92/404 (22%)

Query: 507 EIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIY 566
            I+   KLQ +           +       E     Y +       S  +L  L ++E+Y
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 567 KCSSLVSFPEV----------------------------ALP------SKLKKIEIRECD 592
            C ++   P+                              L        K++   +   +
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 593 ALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGI 652
            L+  P          L +L       + ++      + L  L +   N+I  +  +   
Sbjct: 560 -LEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDY-NQIEEIPEDFCA 616

Query: 653 QSSSSRRYT------SSLLENLAISSCPSLTCI-FSKNEL----PATLESLEVGNLPPSV 701
            +               +       S   +  + FS N++         S++      + 
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG-INA 675

Query: 702 KVLDVYGCPKLESIAERLDNNTSLETINISNC-------ENLKILSSGLHNLCQLQQIGI 754
             + +      +   E     + + TI +SN         +LK       N   L  I +
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 755 GGCGNLESFPEGGLPCA--KLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG-------- 804
                L S  +         L  +++       + P    N + L+   I          
Sbjct: 736 RFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 805 ---------GELPSLEE------------DGLPTNLHSLRIEGN 827
                       PSL +            + L   L+ L I  N
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 118 LLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLED 177
            + L+  +        I+ +  ++  L  L+ +  + +       +V    +      + 
Sbjct: 422 RISLKDTQ-IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV----DWEDANSDY 476

Query: 178 CDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
             + +       NL  L  +   N  ++ + P  +  L  LQ+L
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 13/120 (10%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESVN------ 165
           S      K       +L    I + P  +      +  + LS   + ++PE+        
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 166 --KLYNLHSLLLEDCDRLKKLCADM--GNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
               Y L ++ L    +L  L  D     L  L +++ S        P      + L+  
Sbjct: 724 YKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAF 781

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 34/164 (20%)

Query: 71  HLSYIPEYYVGGKRFGDLYDIQHLR------TFLPVML----TDSSPGYLAPSILPKLLK 120
            +++I +          L  +Q +       T+  + +     +S       +       
Sbjct: 436 RITFISKA------IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 121 LQRLRVFSLRGY-HISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCD 179
           L+ L    L    ++++LPD + DL  L+ LN++     +  +       L         
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE----- 544

Query: 180 RLKKLCADMGNLIKLHHLNNSNTDSLEETP--LGIGKLTCLQTL 221
                        K+         +LEE P    + K+  L  L
Sbjct: 545 ---------DTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLL 578

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 19/117 (16%), Positives = 29/117 (24%), Gaps = 20/117 (17%)

Query: 107 PGYLAPSILPKLLKLQRLRVFSLRGYHISELPDS--VGDLRYLRYLNLSGTNIRTLPESV 164
           P                L    LR   ++ L D      L YL  +++S     + P   
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772

Query: 165 NKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
                L +  +                   H  +      L + P GI     L  L
Sbjct: 773 LNSSQLKAFGI------------------RHQRDAEGNRILRQWPTGITTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 13/117 (11%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 121 LQRLRVFSLRGYHISELPD--SVGDLRYLRYLNLSGTNIRTLPESVN------KLYNLHS 172
             ++         +  +P+  +   +  +  ++ S   I +   +++      K  N  +
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 173 LLLEDCDRLKKLCADM-GNLIKLHHLNNSN-------TDSLEETPLGIGKLTCLQTL 221
           + L     ++K   ++      +  +  SN        +SL+           L T+
Sbjct: 678 VTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 6/111 (5%)

Query: 117 KLLKLQRLRVFSLRGYHIS-ELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLL 175
            L    R+   SL G+     +PD++G L  L+ L+    +                +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 176 EDCDRL-----KKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
           E   R+     K        L     L ++   + E  P+       L+  
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 17/148 (11%), Positives = 44/148 (29%), Gaps = 4/148 (2%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHS 172
             +   +   +L+   L    ++ +         + +++L    +  + +++    NL  
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 173 LLLED----CDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGK 228
             L      C  L+   +    +  +            E    +  L      C   +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 229 DSGSGLSELKLLMHLRGALEISKLENVK 256
                L  LK   H   + + S+ E ++
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLE 329

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 120 KLQRLRVFSLRGYHISELPDS--VGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLED 177
              R++   L+   I  +  +        L +LNL    I  +   V     L +L L  
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSS 200

Query: 178 CDRLKKLCADMGNLIKLHHLN-NSNTDSLEETPLGIGKLTCLQTL 221
             +L  +  +  +   +  ++  +N   L      +     L+  
Sbjct: 201 N-KLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHF 242

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 16/135 (11%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHS 172
                L  L  LR   L   ++ EL         +  L+ +  NI  +  S        +
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSR--GQGKKN 124

Query: 173 LLLEDCDRLKKL-CADMGNLIKLHHLN-NSNTDSLEETPLG--IGKLTCLQTLC---NFV 225
           + L +  ++  L   D G   ++ +L+   N   ++             L+ L    NF+
Sbjct: 125 IYLANN-KITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 226 VGKDSGSGLSELKLL 240
                    ++LK L
Sbjct: 182 YDVKGQVVFAKLKTL 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 34/284 (11%), Positives = 80/284 (28%), Gaps = 45/284 (15%)

Query: 714 SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL-PCAK 772
           +I E   N    +   +++    + L+S   +   ++++ + G   L       L P  K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 773 LRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG------GELPSLEE------------DG 814
           L  L +     L      L +L++L+ L +           PS+E               
Sbjct: 60  LELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 815 LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLG-- 872
                 ++ +  N  I  +M+         S ++YL ++    ++ +             
Sbjct: 118 RGQGKKNIYLANNK-I--TMLRDL-DEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTL 171

Query: 873 ----------TTLPLPASLTSLSIAFFPN--LESLSSSIVDLQNLTKLTLYDCPKLKYFP 920
                       +        L      +  L  +         +T ++L +  KL    
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIE 230

Query: 921 EK-GLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARIA 963
           +      +L    +           +D       +  +    + 
Sbjct: 231 KALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVK 273

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 79/570 (13%), Positives = 160/570 (28%), Gaps = 114/570 (20%)

Query: 411 FPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCK---- 466
           FP LR L +   P+    F          V     E+  ++  L ++             
Sbjct: 72  FPNLRSLKLKGKPRA-AMFNLIPENWGGYVTPWVTEISNNLRQLKSVH---FRRMIVSDL 127

Query: 467 --KVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKD 524
               + ++    L +     C   +      ++     +K+L +          +E++  
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-----FSEKDGK 182

Query: 525 QQQQLCELSCRLEYLRLRYC-------EGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEV 577
              +L + +  LE L            + L  + ++  SL S+K   +     L      
Sbjct: 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK---VGDFEILELVGFF 239

Query: 578 ALPSKLKKIEIRECDALKSLPEPWM-CDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLD 636
              + L++      +    +PE +M       L  L +                 +++LD
Sbjct: 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299

Query: 637 IQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE-VG 695
           +                       T        I  CP+L  + ++N +      LE + 
Sbjct: 300 LLYALLE-----------------TEDHCT--LIQKCPNLEVLETRNVI--GDRGLEVLA 338

Query: 696 NLPPSVKVLDVYGCPKLESIAERLD------------NNTSLETINISNC----ENLKIL 739
                +K L +      + + +                   LE + +       E+L+ +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 740 SSGLHNLCQLQQIGIGGCGNL------ESFPEGGLPCAKLRRLEIYDCKR------LEAL 787
            + L NLC  + + +     +             + C KLRR   Y  +       L  +
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 788 PKGLHNLT--SLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFS 845
            +   N+    L  +      L      G P NL  L + G     +++        +  
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSR-GCP-NLQKLEMRGCCFSERAIAA---AVTKLP 513

Query: 846 SLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNL 905
           SLRYL ++G                              S+      + L        N+
Sbjct: 514 SLRYLWVQGY---------------------------RASM----TGQDLMQMARPYWNI 542

Query: 906 TKLTLYDCPKLKYFPEKGLPSSLLQLRIYR 935
             +     P++    E         +  Y 
Sbjct: 543 ELIPSRRVPEVNQQGEIREMEHPAHILAYY 572

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 55/420 (13%), Positives = 127/420 (30%), Gaps = 94/420 (22%)

Query: 445 EELLVSVLS---LPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDIC 501
           ++++  V++    P         C++  W        ++  V        + D L +   
Sbjct: 18  DDVIEQVMTYITDPKDRDSASLVCRR--WFKIDSE--TREHVTMALCYTATPDRLSRRFP 73

Query: 502 SLKSLEIRGCPKLQ--SLVAEEEKDQQ----QQLCELSCRLEYLRLRYC----EGLVKLP 551
           +L+SL+++G P+    +L+ E           ++     +L+ +  R        L +L 
Sbjct: 74  NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA 133

Query: 552 QSSLSLSSLKEIEIYKCSSL--VSFPEVALP-SKLKKIEIRECD-------ALKSLPEP- 600
           ++      L+ +++ KCS         +     K+K + + E          L  L +  
Sbjct: 134 KARAD--DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 601 ----------------------WMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQ 638
                                  +     SL  +K+ D   L  +   +   +L+     
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251

Query: 639 RCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLP 698
             N+   +                   + + +     L  +      P  +  L      
Sbjct: 252 SLNEDIGMP-----------------EKYMNLVFPRKLCRLGLSYMGPNEMPIL--FPFA 292

Query: 699 PSVKVLDVYGCPKL-ESIAERLDNNTSLETINISNC---ENLKILSSGLHNLCQLQQIGI 754
             ++ LD+       E     +    +LE +   N      L++L+        L+++ I
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ---LKRLRI 349

Query: 755 GGCGNLESFPEGGLP------------CAKLRRLEIYDCK----RLEALPKGLHNLTSLQ 798
               + +   +                C +L  + +Y        LE++   L NL   +
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 76/535 (14%), Positives = 167/535 (31%), Gaps = 112/535 (20%)

Query: 144 LRYLRYLNLSGTNI-----RTLPESVNKLYNLHSLLLEDCDRL--KKLCADMGNLIKLHH 196
           LR L+ ++     +       L ++     +L +L L+ C       L + + +  K+  
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARAD--DLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 197 LNNSNTDSLEETPLGIGKL----TCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKL 252
           L    +   E+    + +L    T L+ L NF + + +     +L+ +     +L   K+
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVL-NFYMTEFAKISPKDLETIARNCRSLVSVKV 227

Query: 253 ENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGI 312
            + + +      +     NL+E          G   +           L   + L + G+
Sbjct: 228 GDFEILELVGFFKAA--ANLEEFCGGSLNEDIGMPEK--------YMNLVFPRKLCRLGL 277

Query: 313 CGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCT--ALPSVGQLPSLKHLTVRGVSRVKRLG 370
              G  + P        + +  L+     + T      + + P+L+ L  R V       
Sbjct: 278 SYMGPNEMPILF--PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV------- 328

Query: 371 SEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRG--- 427
               GD        LE L                    +   +L+ L I      +G   
Sbjct: 329 ---IGDRG------LEVL-------------------AQYCKQLKRLRIERGADEQGMED 360

Query: 428 -----------TFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGH 476
                         +    LE + +   +   ++  SL ++  +L              +
Sbjct: 361 EEGLVSQRGLIALAQGCQELEYMAVYVSD---ITNESLESIGTYL-------------KN 404

Query: 477 LGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQ-----QQLCE 531
           L     V+       +   L   + SL    + GC KL+       +          + +
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSL----LIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460

Query: 532 LSCRLEYLRLRYC----EGLVKLPQSSLSLSSLKEIEIYKCS-SLVSFPEVALP-SKLKK 585
            S  + ++ L Y     EGL++    S    +L+++E+  C  S  +          L+ 
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517

Query: 586 IEIRECDALKSLPEP-WMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQR 639
           + ++   A  +  +   M     ++E++       +    E++       +    
Sbjct: 518 LWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYY 572

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 13/130 (10%), Positives = 35/130 (26%), Gaps = 4/130 (3%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHS 172
             +   +   +L+   L    ++ +         + +++L    +  + +++    NL  
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 173 LLLED----CDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGK 228
             L      C  L+   +    +  +            E    +  L      C   +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 229 DSGSGLSELK 238
                L  L 
Sbjct: 302 PFADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 120 KLQRLRVFSLRGYHISELP--DSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLED 177
              R++   L+   I  +   +       L +LNL    I  +   V     L +L L  
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSS 200

Query: 178 CDRLKKLCADMGNLIKLHHLN-NSNTDSLEETPLGIGKLTCLQTL 221
             +L  +  +  +   +  ++  +N   L      +     L+  
Sbjct: 201 N-KLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 34/283 (12%), Positives = 80/283 (28%), Gaps = 45/283 (15%)

Query: 714 SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL-PCAK 772
           +I E   N    +   +++    + L+S   +   ++++ + G   L       L P  K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 773 LRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG------GELPSLEE------------DG 814
           L  L +     L      L +L++L+ L +           PS+E               
Sbjct: 60  LELLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 815 LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLG-- 872
                 ++ +  N  I  +M+         S ++YL ++    ++ +             
Sbjct: 118 RGQGKKNIYLANNK-I--TMLRDL-DEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTL 171

Query: 873 ----------TTLPLPASLTSLSIAFFPN--LESLSSSIVDLQNLTKLTLYDCPKLKYFP 920
                       +        L      +  L  +         +T ++L +  KL    
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIE 230

Query: 921 EK-GLPSSLLQLRIYRCPLIEEKCRKDGGQYWDLLTHIPYARI 962
           +      +L    +           +D       +  +    +
Sbjct: 231 KALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 16/133 (12%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
              L  L  LR   L   ++ EL         +  L+ +  NI  +  S        ++ 
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSR--GQGKKNIY 126

Query: 175 LEDCDRLKKL-CADMGNLIKLHHLN-NSNTDSLEETPLG--IGKLTCLQTLC---NFVVG 227
           L +  ++  L   D G   ++ +L+   N   ++             L+ L    NF+  
Sbjct: 127 LANN-KITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 228 KDSGSGLSELKLL 240
                  ++LK L
Sbjct: 184 VKGQVVFAKLKTL 196

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 121 LQRLRVFSLRGYHISELPDSVG-DLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDC 178
             R ++  +    + +   S+      ++ L+LSG  +  +  +       L  L L   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 179 DRLKKLCADMGNLIKLHHLN-NSNTDSLEETPLGIGKLTCLQTL 221
             L +   D+ +L  L  L+ N+N   ++E    +     ++TL
Sbjct: 69  -VLYET-LDLESLSTLRTLDLNNN--YVQE----LLVGPSIETL 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 62/416 (14%), Positives = 141/416 (33%), Gaps = 76/416 (18%)

Query: 536 LEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALK 595
           +  L+     G+  +      L++L +I       L     +   +KL  I +     + 
Sbjct: 48  VTTLQADRL-GIKSIDGVE-YLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IA 103

Query: 596 SLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSS 655
            +         ++L  L +++   +T I  ++   +L RL++   N I  ++   G+ S 
Sbjct: 104 DITPLANL---TNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSS-NTISDISALSGLTSL 158

Query: 656 SSRRYTSSLLENLAISSCPSLTCIF-SKNEL--PATLESL-----------------EVG 695
               + + + +   +++  +L  +  S N++   + L  L                  +G
Sbjct: 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 218

Query: 696 NLPPSVKVLDVYGCPKLESIAERLDNNTSLETINIS-----------NCENLKILS---- 740
            L  ++  L + G  +L+ I   L + T+L  ++++               L  L     
Sbjct: 219 ILT-NLDELSLNGN-QLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275

Query: 741 -----SGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNL 794
                S L  L  L  + +     LE       L    L  L +Y    +  +   + +L
Sbjct: 276 QISNISPLAGLTALTNLELNEN-QLEDISPISNLK--NLTYLTLYFNN-ISDIS-PVSSL 330

Query: 795 TSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854
           T LQ+L     ++  +      TN++ L    N       I         + +  L +  
Sbjct: 331 TKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN------QISDLTPLANLTRITQLGLND 384

Query: 855 CDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTL 910
                 + P           + +P ++ +++           ++I D  + T+  +
Sbjct: 385 Q--AWTNAPVN-----YKANVSIPNTVKNVT-----GALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 61/343 (17%), Positives = 122/343 (35%), Gaps = 78/343 (22%)

Query: 607 SSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLE 666
             +  L+      +  I  V+   +L +++    N++  +T                   
Sbjct: 46  DQVTTLQADRL-GIKSIDGVEYLNNLTQINF-SNNQLTDIT------------------- 84

Query: 667 NLAISSCPSLTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSL 725
              + +   L  I  + N++ A +  L   NL  ++  L ++   ++  I + L N T+L
Sbjct: 85  --PLKNLTKLVDILMNNNQI-ADITPL--ANLT-NLTGLTLFNN-QITDI-DPLKNLTNL 136

Query: 726 ETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLE 785
             + +S+   +  +S+ L  L  LQQ+  G     +  P   L    L RL+I   K + 
Sbjct: 137 NRLELSSN-TISDISA-LSGLTSLQQLSFGNQ-VTDLKPLANLT--TLERLDISSNK-VS 190

Query: 786 ALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFS 845
            +   L  LT+L+ L     ++  +   G+ TNL  L + GN       ++        +
Sbjct: 191 DIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN------QLKDIGTLASLT 243

Query: 846 SLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLS-IAFFPNLESLS-------- 896
           +L  L +                            +++L+ ++    L  L         
Sbjct: 244 NLTDLDLANN------------------------QISNLAPLSGLTKLTELKLGANQISN 279

Query: 897 -SSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPL 938
            S +  L  LT L L +  +L+         +L  L +Y   +
Sbjct: 280 ISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 40/247 (16%), Positives = 79/247 (31%), Gaps = 40/247 (16%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
                 L ++         I  +   V  L  L  +N S   +  +   +  L  L  +L
Sbjct: 39  TVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDIL 96

Query: 175 LEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLC---NFVVGKDSG 231
           + +  ++  +   + NL  L  L   N   + +    +  LT L  L    N +    + 
Sbjct: 97  MNNN-QIADI-TPLANLTNLTGLTLFNN-QITDID-PLKNLTNLNRLELSSNTISDISAL 152

Query: 232 SGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREA 291
           SGL+ L+ L       +++ L+            L     L+ L +   + +D       
Sbjct: 153 SGLTSLQQL-SFGN--QVTDLKP-----------LANLTTLERLDISSNKVSD------- 191

Query: 292 ETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQ 351
                 + +L    NLE          +        + +NL  L      +   + ++  
Sbjct: 192 ------ISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQL-KDIGTLAS 241

Query: 352 LPSLKHL 358
           L +L  L
Sbjct: 242 LTNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 47/330 (14%), Positives = 116/330 (35%), Gaps = 45/330 (13%)

Query: 501 CSLKSLE-IRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSS 559
            ++  +  + G   LQ L    +    + L  L+  LE L +   + +  +   +  L++
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLT-TLERLDISSNK-VSDISVLA-KLTN 200

Query: 560 LKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHS 619
           L+ +       +     + + + L ++ +     LK +         ++L  L + +   
Sbjct: 201 LESLIATNNQ-ISDITPLGILTNLDELSLNGN-QLKDIGTLASL---TNLTDLDLANNQ- 254

Query: 620 LTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCI 679
           ++ +A +     L  L +   N+I  ++                      ++   +LT +
Sbjct: 255 ISNLAPLSGLTKLTELKLGA-NQISNIS---------------------PLAGLTALTNL 292

Query: 680 -FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKI 738
             ++N+L    E +   +   ++  L +Y    +  I+  + + T L+ +   N   +  
Sbjct: 293 ELNENQL----EDISPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSD 345

Query: 739 LSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSL 797
           +SS L NL  +  +  G    +        L   ++ +L + D     A      N++  
Sbjct: 346 VSS-LANLTNINWLSAGHN-QISDLTPLANLT--RITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 798 QQLTIIGGELPSLEEDGLPTNLHSLRIEGN 827
             +  + G L +        +     I  N
Sbjct: 402 NTVKNVTGALIAPATISDGGSYTEPDITWN 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 66/313 (21%), Positives = 113/313 (36%), Gaps = 62/313 (19%)

Query: 536 LEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALK 595
           L+ + +     L KLP       SL+ I       L   PE+     L  I       LK
Sbjct: 155 LKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNS-LK 208

Query: 596 SLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSS 655
            LP     D   SLE +   +   L  + E+Q    L  +     N ++TL   +   S 
Sbjct: 209 KLP-----DLPLSLESIVAGNNI-LEELPELQNLPFLTTIYADN-NLLKTL--PDLPPS- 258

Query: 656 SSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGN--------LPPSVKVLDVY 707
                    LE L +     LT +    ELP +L  L+V          LPP++  L+  
Sbjct: 259 ---------LEALNVRDN-YLTDL---PELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305

Query: 708 GCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGG 767
              ++ S+ +      SLE +N+SN   L  L +      +L+++      +L   PE  
Sbjct: 306 SN-EIRSLCDLP---PSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEVPEL- 355

Query: 768 LPCAKLRRLEIYDCK--RLEALPKGLHNLTSLQQLTIIGGELPSLEE-----------DG 814
                L++L +          +P+ + +L     L  +     +L++             
Sbjct: 356 --PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413

Query: 815 LPTNLHSLRIEGN 827
           +P ++  LR+   
Sbjct: 414 IPESVEDLRMNSE 426

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 4e-09
 Identities = 85/429 (19%), Positives = 137/429 (31%), Gaps = 103/429 (24%)

Query: 541 LRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALP-SKLKKIEIRECDALKSLPE 599
           LR+   L ++P  + ++ S  E          + P       ++    +R+C        
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-------- 68

Query: 600 PWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRR 659
                       L++ +   L+ + E  LP  L+ L    CN +  L             
Sbjct: 69  -----LDRQAHELELNNL-GLSSLPE--LPPHLESLVAS-CNSLTELPEL---------- 109

Query: 660 YTSSLLENLAISSCPSLTCIF-SKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER 718
                       S  SL     +   L          +LPP ++ L V    +LE + E 
Sbjct: 110 ----------PQSLKSLLVDNNNLKALS---------DLPPLLEYLGVSNN-QLEKLPE- 148

Query: 719 LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778
           L N++ L+ I++ N  +LK L     +L  +     G    LE  PE       L  +  
Sbjct: 149 LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIA---AGNN-QLEELPELQ-NLPFLTAIYA 202

Query: 779 YDCKRLEALPKGLHNLTSLQ----QLTIIG--GELPSLEE-----------DGLPTNLHS 821
            +   L+ LP    +L S+      L  +     LP L               LP +L +
Sbjct: 203 DNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261

Query: 822 LRIEGNMGIWKSMIERGRGFHR-FSSLRYLLIRGCDDDMVSFPPEPE--------DRRLG 872
           L +  N                   SL +L +             P            + 
Sbjct: 262 LNVRDN---------YLTDLPELPQSLTFLDVSENIFS--GLSELPPNLYYLNASSNEIR 310

Query: 873 TTLPLPASLTSLSIAFFPN-LESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQL 931
           +   LP SL  L+++   N L  L +       L +L       L   PE  LP +L QL
Sbjct: 311 SLCDLPPSLEELNVSN--NKLIELPALPP---RLERLIASFN-HLAEVPE--LPQNLKQL 362

Query: 932 RIYRCPLIE 940
            +   PL E
Sbjct: 363 HVEYNPLRE 371

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 100/552 (18%), Positives = 172/552 (31%), Gaps = 162/552 (29%)

Query: 114 ILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNI-RTLPESVNKLYNLHS 172
           I P+ +    L+       +++E+P    +++       + +   R  P    +   +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 173 LLLEDCD------------RLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQT 220
             L DC              L  L     +L  L    N    SL E P     L  L  
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCN----SLTELPELPQSLKSLLV 118

Query: 221 LCNFVVGKDSGSGLSEL-KLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW 279
             N      +   LS+L  LL +L   +  ++LE + ++ N+          LK + +  
Sbjct: 119 DNN------NLKALSDLPPLLEYLG--VSNNQLEKLPELQNS--------SFLKIIDVDN 162

Query: 280 TRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFED 339
                                                  K P         +L  +   +
Sbjct: 163 NSL-----------------------------------KKLPDLPP-----SLEFIAAGN 182

Query: 340 CGMCTALPSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETL-----RFEDLQ 394
             +   LP +  LP L  +     + +K+L         P     LE++       E+L 
Sbjct: 183 NQL-EELPELQNLPFLTAIYADN-NSLKKL---------PDLPLSLESIVAGNNILEELP 231

Query: 395 EWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSL 454
           E            ++  P L  ++  +   L+ T P+  P LE L +      L  +  L
Sbjct: 232 E------------LQNLPFLTTIY-ADNNLLK-TLPDLPPSLEALNVRDNY--LTDLPEL 275

Query: 455 PALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKL 514
           P    FL                         D S     GL +   +L  L        
Sbjct: 276 PQSLTFL-------------------------DVSENIFSGLSELPPNLYYLNASSN--- 307

Query: 515 QSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSF 574
                     + + LC+L   LE L +   + L++LP        L+ +       L   
Sbjct: 308 ----------EIRSLCDLPPSLEELNVSNNK-LIELPA---LPPRLERLIASFN-HLAEV 352

Query: 575 PEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKR 634
           PE  LP  LK++ +     L+  P+        S+E L++     L  + E  LP +LK+
Sbjct: 353 PE--LPQNLKQLHVEYN-PLREFPD-----IPESVEDLRM--NSHLAEVPE--LPQNLKQ 400

Query: 635 LDIQRCNKIRTL 646
           L +   N +R  
Sbjct: 401 LHV-ETNPLREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 8e-06
 Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLY---- 168
             LP+L  L  L         +  LPD    L  L   +   T++  LP+S+  L     
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287

Query: 169 ----------NLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCL 218
                     NL+ L       ++ LC    +L +L+  NN     L E P    +L  L
Sbjct: 288 IFSGLSELPPNLYYLNASSN-EIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERL 342

Query: 219 QTLCN 223
               N
Sbjct: 343 IASFN 347

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 31/238 (13%), Positives = 77/238 (32%), Gaps = 64/238 (26%)

Query: 543 YCEGL--VKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIR---ECDALKS- 596
           YC  L    L ++ ++         +  + +     V LP  LK+I  +   +   LK+ 
Sbjct: 178 YCYNLKKADLSKTKITK---LPASTFVYAGIEE---VLLPVTLKEIGSQAFLKTSQLKTI 231

Query: 597 -LPEPWMCDTSSSLEILKIW---DCHSLTYIAEVQLPLSLKRLDI---QRCNKIRTLTVE 649
            +P         ++  +      +   +T    V+LP  +  +       C ++  +T  
Sbjct: 232 EIP--------ENVSTIGQEAFRES-GIT---TVKLPNGVTNIASRAFYYCPELAEVT-- 277

Query: 650 EGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVY-- 707
                S+      +++    +  CP L                    +P S+++L     
Sbjct: 278 --TYGSTFNDDPEAMIHPYCLEGCPKLARF----------------EIPESIRILGQGLL 319

Query: 708 -GCPKLESIA-----ERLDN----NTSLETINISNCENLKILSSGLHNLCQ-LQQIGI 754
            G  K+  +       +++     NT ++ + +      ++     +     +  I +
Sbjct: 320 GGNRKVTQLTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 37/372 (9%), Positives = 88/372 (23%), Gaps = 127/372 (34%)

Query: 556 SLSSLKEIEIYKCSSLVSF-------PEVALPSKLKKIEIRECDALKSLPEPWMCDTSSS 608
            L +     + +   L               P K+   +I    +   + +  +  T   
Sbjct: 30  QLPAKTIYALGENIDLTGLNVTGKYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEG 89

Query: 609 LEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENL 668
            +        S   +    L         +       + +   ++S          +   
Sbjct: 90  -KQKSFSVHISPVRVENGVL--------TEILKGYNEIILPNSVKS----------IPKD 130

Query: 669 AISSCPSLTCIFSKNELPATLESLEVG----------NLPPSVKVLDV---YGCPKLESI 715
           A  +   +  +     L   L+S+               P +++ L     Y C  L+  
Sbjct: 131 AFRNS-QIAKV----VLNEGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKA 185

Query: 716 ----------AERLDNNTSLETINI------------SNCENLK--ILSSGLHNL----- 746
                              +E + +                 LK   +   +  +     
Sbjct: 186 DLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAF 245

Query: 747 --CQLQQIGIG------------GCGNLES--FPEGGLP--------------CAKLRRL 776
               +  + +              C  L                         C KL R 
Sbjct: 246 RESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305

Query: 777 EI------------YDCKRLE--ALPKGLHNL-------TSLQQLTIIGGELPSLEED-- 813
           EI               +++    +P  +  +       T ++++ + G   P + E   
Sbjct: 306 EIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVW 365

Query: 814 -GLPTNLHSLRI 824
            G P ++  +R+
Sbjct: 366 YGFPDDITVIRV 377

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 56/278 (20%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 675 SLTCIFSKNELPATLESLEVGN-----LPPSV-------KVLDVYGCPKLESIAERL-DN 721
           SL  I S   L   ++SL++ N     +  S        + L +     + +I E    +
Sbjct: 42  SLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS 98

Query: 722 NTSLETINISNCENLKILSSGL-HNLCQLQQIGIGGCGNLESFPEGGL--PCAKLRRLEI 778
             SLE +++S    L  LSS     L  L  + + G    ++  E  L     KL+ L +
Sbjct: 99  LGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRV 156

Query: 779 YDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEE---DGLPTNLHSLRIEGNMGIWKSM 834
            +      + +     LT L++L I   +L S E      +  N+  L +         +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI-QNVSHLILHMK-QH--IL 212

Query: 835 IERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES 894
           +         SS+  L +R  D D+ +F           +L    +  ++ I     L  
Sbjct: 213 LLEI-FVDVTSSVECLELR--DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQ 268

Query: 895 LSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLR 932
           +   +  +  L +L      +LK  P+ G+   L  L+
Sbjct: 269 VMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLTSLQ 304

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 54/263 (20%), Positives = 88/263 (33%), Gaps = 30/263 (11%)

Query: 124 LRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDCDRL 181
           ++   L    I+ + +S       L+ L L+   I T+ E   + L +L  L L     L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YL 112

Query: 182 KKLCADM-GNLIKLHHLN-NSNT-DSLEETPL--GIGKLTCLQTLCNFVVGKDSGSGLSE 236
             L +     L  L  LN   N   +L ET L   + KL  L+        K      + 
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 237 LKLLMHLRGALEISKLENV-----KDVGNAKEARLDGKK----------NLKELLLRWTR 281
           L  L  L   ++ S L++      K + N     L  K+              +     R
Sbjct: 173 LTFLEELE--IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 282 STDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCG 341
            TD  +   +E   G  + L          I      +    L     S L+ LEF    
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQ 288

Query: 342 MCTALPS--VGQLPSLKHLTVRG 362
           +  ++P     +L SL+ + +  
Sbjct: 289 L-KSVPDGIFDRLTSLQKIWLHT 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 30/118 (25%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLY------ 168
           LP L     LR   + G  ++ LP     L  L   +   T++  LP  + KL+      
Sbjct: 76  LPALPP--ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133

Query: 169 --------NLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCL 218
                    L  L + D  +L  L A    L KL   NN     L   P+    L  L
Sbjct: 134 TSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNN----QLTSLPMLPSGLQEL 186

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 72/334 (21%), Positives = 121/334 (36%), Gaps = 64/334 (19%)

Query: 519 AEEEKDQQQQLCEL-SCR---LEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSF 574
           AEE + +   + ++ +C       L +    GL  LP    +   +  + I   + L S 
Sbjct: 21  AEESRGRAAVVQKMRACLNNGNAVLNVGES-GLTTLPDCLPA--HITTLVIPDNN-LTSL 76

Query: 575 PEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKR 634
           P   LP +L+ +E+     L SLP          L  L I+    LT++    LP  L +
Sbjct: 77  PA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFSN-PLTHLPA--LPSGLCK 125

Query: 635 LDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEV 694
           L I   N++ +L V                L+ L++S    L  +     LP+ L  L  
Sbjct: 126 LWI-FGNQLTSLPVL------------PPGLQELSVSDNQ-LASL---PALPSELCKLWA 168

Query: 695 GN--------LPPSVKVLDVYGCPKLESIAERLDNNTSLETIN---------ISNCENLK 737
            N        LP  ++ L V    +L S+         L   N          S  + L 
Sbjct: 169 YNNQLTSLPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELI 227

Query: 738 ILSSGLHNL----CQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHN 793
           +  + L +L     +L+++ + G   L S P      + L  L +Y   +L  LP+ L +
Sbjct: 228 VSGNRLTSLPVLPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIH 282

Query: 794 LTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGN 827
           L+S   + + G  L           + S      
Sbjct: 283 LSSETTVNLEGNPLSERTLQ-ALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 58/228 (25%), Positives = 84/228 (36%), Gaps = 40/228 (17%)

Query: 722 NTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC 781
           N     +N+     L  L   L     +  + I    NL S P       +LR LE+   
Sbjct: 39  NNGNAVLNVGES-GLTTLPDCL--PAHITTLVIPDN-NLTSLPALP---PELRTLEVSGN 91

Query: 782 KRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGF 841
            +L +LP     L  L   +     LP+     LP+ L  L I GN        +     
Sbjct: 92  -QLTSLPVLPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGN--------QLTSLP 137

Query: 842 HRFSSLRYLLIRGCDDDMVSFPPEPED-RRLG------TTLP-LPASLTSLSIAFFPN-L 892
                L+ L +      + S P  P +  +L       T+LP LP+ L  LS++   N L
Sbjct: 138 VLPPGLQELSVSDN--QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSD--NQL 193

Query: 893 ESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIE 940
            SL +       L KL  Y+  +L   P   LPS L +L +    L  
Sbjct: 194 ASLPTLP---SELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLTS 235

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 124 LRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK 183
             V ++    ++ LPD +     +  L +   N+ +LP        L +L +    +L  
Sbjct: 42  NAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTS 95

Query: 184 LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTC 217
           L      L++L   +N  T  L   P G+ KL  
Sbjct: 96  LPVLPPGLLELSIFSNPLT-HLPALPSGLCKLWI 128

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 13/109 (11%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           LP L     L+  S+    ++ LP    +L  L         + +LP        L  L 
Sbjct: 136 LPVLP--PGLQELSVSDNQLASLPALPSELCKL---WAYNNQLTSLPML---PSGLQELS 187

Query: 175 LEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCN 223
           + D  +L  L      L KL   NN     L   P     L  L    N
Sbjct: 188 VSDN-QLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKELIVSGN 231

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 12/109 (11%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           LP  L    +    +   +++ LP    +   LR L +SG  + +LP     L  L    
Sbjct: 55  LPDCL-PAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFS 110

Query: 175 LEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCN 223
                 L  L A    L KL    N     L   P+    L  L    N
Sbjct: 111 N----PLTHLPALPSGLCKLWIFGN----QLTSLPVLPPGLQELSVSDN 151

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 8e-06
 Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 115 LPKLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSL 173
           LP L   LQ L V   +   ++ LP    +L  L   N     + +LP        L  L
Sbjct: 176 LPMLPSGLQELSVSDNQ---LASLPTLPSELYKLWAYNN---RLTSLPAL---PSGLKEL 226

Query: 174 LLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCN 223
           ++    RL  L      L +L    N     L   P+    L  L    N
Sbjct: 227 IVSGN-RLTSLPVLPSELKELMVSGN----RLTSLPMLPSGLLSLSVYRN 271

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           LP L     L   S+    ++ LP+S+  L     +NL G  +        +   + S  
Sbjct: 256 LPMLP--SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR--EITSAP 311

Query: 175 LEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNF 224
                 ++   A      +   L+ +  D L   P   G+         F
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGEPAPADRWHMF 359

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 23/221 (10%)

Query: 699 PSVKVLDVYGCPKLESIAER-LDNNTSLETINISNCENLKILSSG-LHNLCQLQQIGIGG 756
             ++VL +     +  I     +   SL T+ + +   L ++ SG    L +L+++ +  
Sbjct: 99  HHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRN 156

Query: 757 CGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEEDG 814
              +ES P         L RL++ + K+LE + +G    L +L+ L +    +  +    
Sbjct: 157 N-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT 215

Query: 815 LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTT 874
               L  L + GN       I  G  FH  SSL+ L +      +               
Sbjct: 216 PLVGLEELEMSGN-HF--PEIRPG-SFHGLSSLKKLWVMNS--QVSLIER-------NAF 262

Query: 875 LPLPASLTSLSIAFFPNLESLSSSIVD-LQNLTKLTLYDCP 914
             L  SL  L++    NL SL   +   L+ L +L L+  P
Sbjct: 263 DGLA-SLVELNL-AHNNLSSLPHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 11/117 (9%)

Query: 109 YLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV-NKL 167
           Y++      L  L+ L   +L   +I ++P+ +  L  L  L +SG +   +     + L
Sbjct: 186 YISEGAFEGLFNLKYL---NLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 168 YNLHSLLLEDCDRLKKLCADM-GNLIKLHHLN-NSNTDSLEETPLGI-GKLTCLQTL 221
            +L  L + +  ++  +  +    L  L  LN   N  +L   P  +   L  L  L
Sbjct: 242 SSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN--NLSSLPHDLFTPLRYLVEL 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 64/446 (14%), Positives = 134/446 (30%), Gaps = 83/446 (18%)

Query: 502 SLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLK 561
           +L+ L++    K+QS+         + L ++      L L     +  +   +     L 
Sbjct: 150 NLEHLDLSSN-KIQSI----YCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLH 203

Query: 562 EIEIYKCSSLVSFPEVALPS-------KLKKIEIRECDALKSLPEPWMCD-TSSSLEILK 613
           ++ +      ++  +  +         +L   E R    L+   +  +    + ++E  +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 614 I--WDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAIS 671
           +   D +    I       ++    +     I  +               +         
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLV-SVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 672 SCPSLTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCP--KLESIAERLDNNTSLETI 728
              SL  + F+ N+      +       PS++ LD+           ++     TSL+ +
Sbjct: 323 KLKSLKRLTFTSNKG----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 729 NISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL--PCAKLRRLEIYDCKRLEA 786
           ++S    +  +SS    L QL+ +      NL+   E  +      L  L+I        
Sbjct: 379 DLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRV 435

Query: 787 LPKG-LHNLTSLQQLTI----IGGELPSLEEDGLPTNLHSLRIEGNM--GIWKSMIERGR 839
              G  + L+SL+ L +                L  NL  L +       +  +      
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTA----- 489

Query: 840 GFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSI 899
            F+  SSL+ L +                            L S+    F          
Sbjct: 490 -FNSLSSLQVLNMASN------------------------QLKSVPDGIFDR-------- 516

Query: 900 VDLQNLTKLTLY------DCPKLKYF 919
             L +L K+ L+       CP++ Y 
Sbjct: 517 --LTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 66/335 (19%), Positives = 126/335 (37%), Gaps = 42/335 (12%)

Query: 500 ICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLS-LS 558
           +  L   E R    L+      +K   + LC L+  +E  RL Y +  +       + L+
Sbjct: 229 VHRLVLGEFRNEGNLEKF----DKSALEGLCNLT--IEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 559 SLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCH 618
           ++    +   + +    + +     + +E+  C      P   +     SL+ L      
Sbjct: 283 NVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCK-FGQFPTLKL----KSLKRLTFTSNK 336

Query: 619 SLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTC 678
                +EV LP SL+ LD+ R N +       G  S S    TS  L+ L +S    +  
Sbjct: 337 GGNAFSEVDLP-SLEFLDLSR-NGLSFK----GCCSQSDFGTTS--LKYLDLSFN-GVI- 386

Query: 679 IFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER--LDNNTSLETINISNCENL 736
                 + +    L        ++ LD      L+ ++E     +  +L  ++IS+    
Sbjct: 387 -----TMSSNFLGL------EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 737 KILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPC-AKLRRLEIYDCKRLEALPKG-LHNL 794
              +   + L  L+ + + G    E+F          L  L++  C+ LE L     ++L
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSL 493

Query: 795 TSLQQLTIIGGELPSLEEDGLP--TNLHSLRIEGN 827
           +SLQ L +   +L S+ +      T+L  + +  N
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 110 LAPSILPKLLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKL 167
           L         +LQ L    L    I  + D     L +L  L L+G  I++L     + L
Sbjct: 43  LGSYSFFSFPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 168 YNLHSLLLEDCDRLKKLCADM-GNLIKLHHLN-NSNTDSLEETPLG--IGKLTCLQTL 221
            +L  L+  +   L  L     G+L  L  LN   N   ++   L      LT L+ L
Sbjct: 100 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 69/380 (18%), Positives = 135/380 (35%), Gaps = 62/380 (16%)

Query: 566 YKCSS--LVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYI 623
           Y+C        P+  LP   K +++     L+ L   +   +   L++L +  C  +  I
Sbjct: 12  YQCMELNFYKIPD-NLPFSTKNLDLSFNP-LRHLG-SYSFFSFPELQVLDLSRCE-IQTI 67

Query: 624 AE---VQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIF 680
            +     L   L  L +   N I++L +                    A S   SL  + 
Sbjct: 68  EDGAYQSLS-HLSTLILTG-NPIQSLALG-------------------AFSGLSSLQKLV 106

Query: 681 -SKNELPATLESLEVGNLPPSVKVLDVYGCPKLESI--AERLDNNTSLETINISNCENLK 737
             +  L A+LE+  +G+L  ++K L+V     ++S    E   N T+LE +++S+ +   
Sbjct: 107 AVETNL-ASLENFPIGHLK-TLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 738 ILSSGLHNLCQLQQIGIG---GCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKG-LHN 793
           I  + L  L Q+  + +        +     G     +L +L + +      + K  +  
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 794 LTSLQQLTIIGGELPSLE-----EDGLPTNLHSLRIEGN--MGIWKSMIERGRGFHRFSS 846
           L  L+   ++ GE  +       +      L +L IE      +   + +    F+  ++
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 847 LRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLT 906
           +    +      +        +      L     L +     FP L+        L++L 
Sbjct: 284 VSSFSLVSVT--IERVKDFSYNFGW-QHL----ELVNCKFGQFPTLK--------LKSLK 328

Query: 907 KLTLYDCPKLKYFPEKGLPS 926
           +LT         F E  LPS
Sbjct: 329 RLTFTSNKGGNAFSEVDLPS 348

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 85  FGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISEL--PDSVG 142
           F  L  +Q L         +++   L    +  L  L+ L   ++    I     P+   
Sbjct: 96  FSGLSSLQKLV------AVETNLASLENFPIGHLKTLKEL---NVAHNLIQSFKLPEYFS 146

Query: 143 DLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLE---DCDRLKKLCADMGNLIKLHHLN 198
           +L  L +L+LS   I+++  +    L+ +  L L      + +  +       I+LH L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 199 -NSNTDSLEETPLGIGKLTCLQTL 221
             +N DSL      I  L  L+  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVH 230

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 56/337 (16%), Positives = 110/337 (32%), Gaps = 47/337 (13%)

Query: 616 DCHS--LTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSC 673
            C       I +  LP S K LD+   N +R       + S S   +    L+ L +S C
Sbjct: 13  QCMELNFYKIPD-NLPFSTKNLDLSF-NPLRH------LGSYSFFSFPE--LQVLDLSRC 62

Query: 674 PSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER-LDNNTSLETINISN 732
             +  I          +SL        +  L + G   ++S+A       +SL+ +    
Sbjct: 63  -EIQTI-----EDGAYQSL------SHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE 109

Query: 733 CENLKILSSG-LHNLCQLQQIGIGGCGNLESFPEGGL--PCAKLRRLEIYDCKRLEALPK 789
             NL  L +  + +L  L+++ +     ++SF           L  L++   K ++++  
Sbjct: 110 T-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC 166

Query: 790 GLHNLTSLQQLTIIGGEL-------PSLEEDGL-PTNLHSLRIEGNMGIWKSMIERGRGF 841
              +L  L Q+ ++   L         ++        LH L +  N      M    +G 
Sbjct: 167 T--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 842 HRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVD 901
                 R +L    ++  +    +     L         L  L       L+ +      
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY----YLDDIIDLFNC 280

Query: 902 LQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPL 938
           L N++  +L     ++   +         L +  C  
Sbjct: 281 LTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKF 316

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 115 LPKLLKLQRLRVFSLRGYHISEL---PDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLH 171
               + L  L    L    +S       S      L+YL+LS   + T+  +   L  L 
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 172 SLLLEDCDRLKKL--CADMGNLIKLHHLNNSNTDSLEETPLGI-GKLTCLQTL 221
            L  +    LK++   +   +L  L +L+ S+T        GI   L+ L+ L
Sbjct: 400 HLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVL 450

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 23/221 (10%)

Query: 699 PSVKVLDVYGCPKLESIAER-LDNNTSLETINISNCENLKILSSG-LHNLCQLQQIGIGG 756
             +++L +     + +I     +   +L T+ + +   L  + +G    L +L+++ +  
Sbjct: 88  RHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRN 145

Query: 757 CGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEEDG 814
              +ES P         LRRL++ + KRL  + +G    L++L+ L +    L  +    
Sbjct: 146 N-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT 204

Query: 815 LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTT 874
               L  L + GN  +  S I  G  F     L+ L +      +               
Sbjct: 205 PLIKLDELDLSGNH-L--SAIRPG-SFQGLMHLQKLWMIQS--QIQVIER-------NAF 251

Query: 875 LPLPASLTSLSIAFFPNLESLSSSIVD-LQNLTKLTLYDCP 914
             L  SL  +++    NL  L   +   L +L ++ L+  P
Sbjct: 252 DNLQ-SLVEINL-AHNNLTLLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 121 LQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDC 178
           L  L    L    ++ +P+     L  L+ L L    I ++P    N++ +L  L L + 
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 179 DRLKKLCADM-GNLIKLHHLN 198
            RL  +       L  L +LN
Sbjct: 171 KRLSYISEGAFEGLSNLRYLN 191

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 4e-08
 Identities = 75/427 (17%), Positives = 138/427 (32%), Gaps = 61/427 (14%)

Query: 536 LEYLRLRYCEGLVKLPQSSLS-LSSLKEIEIYKCSSLVSFPEVALP--SKLKKIEIRECD 592
            + + L +   L  L   S S  S L+ +++ +C  + +  + A      L  + +    
Sbjct: 34  TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91

Query: 593 ALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLP--LSLKRLDIQRCNKIRTLTVEE 650
            ++S         +S LE L   +   L  +    +   ++LK+L++   N I +  +  
Sbjct: 92  -IQSFSPGSFSGLTS-LENLVAVETK-LASLESFPIGQLITLKKLNVAH-NFIHSCKLPA 147

Query: 651 GIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCP 710
              + ++       L ++ +S    +  I         L+ L     P     LD+   P
Sbjct: 148 YFSNLTN-------LVHVDLSYN-YIQTI-----TVNDLQFLR--ENPQVNLSLDMSLNP 192

Query: 711 KLESIAERLDNNTSLETINIS-NCENLKILSSGLHNLCQLQ-----QIGIGGCGNLESFP 764
            ++ I ++      L  + +  N  +  I+ + L NL  L              NLE F 
Sbjct: 193 -IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 765 EG---GLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHS 821
                GL    +    +             H L ++  +++ G  +  LE+        S
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311

Query: 822 LRIEGNM------GIWKS---------MIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEP 866
           L I                                    SL YL +       +SF    
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN---ALSFSGCC 368

Query: 867 EDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPS 926
               LGT      SL  L ++ F     +S++ + L+ L  L       LK   E     
Sbjct: 369 SYSDLGTN-----SLRHLDLS-FNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFL 421

Query: 927 SLLQLRI 933
           SL +L  
Sbjct: 422 SLEKLLY 428

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 6e-08
 Identities = 59/401 (14%), Positives = 123/401 (30%), Gaps = 43/401 (10%)

Query: 527 QQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPS----- 581
           Q L E       L +     +  +   +     L E+ +    +  +  +  L +     
Sbjct: 174 QFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 582 --KLKKIEIRECDALKSLPEPWMCD-TSSSLEILKIWDCHSLTYIAEVQLPLS-LKRLDI 637
             +L   E ++   L+      M      +++  ++   +  +        L+ +  + +
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCI-FSKNELPATLESLEVGN 696
                I+ L          S       L+       P L  +  + N+   + + + + +
Sbjct: 293 AG-VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351

Query: 697 LPPSVKVLDVYGCP--KLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGI 754
           L      LD+           +       SL  +++S      I+S+    L +LQ +  
Sbjct: 352 L----SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDF 406

Query: 755 GGCGNLESFPEGGL--PCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQL-----TIIGGE 806
                L+   E        KL  L+I      +    G    LTSL  L     +     
Sbjct: 407 QHS-TLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 807 LPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPE- 865
           L ++      TNL  L +     +    I  G  F     L+ L +   +  ++      
Sbjct: 465 LSNVF--ANTTNLTFLDLSKC-QL--EQISWGV-FDTLHRLQLLNMSHNN--LLFLDSSH 516

Query: 866 -PEDRRLGTTLPLPA-SLTSLSIAFFPNLESLSSSIVDLQN 904
             +   L +TL      + +         +SL  +  +L N
Sbjct: 517 YNQLYSL-STLDCSFNRIETSKGILQHFPKSL--AFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 65/375 (17%), Positives = 117/375 (31%), Gaps = 53/375 (14%)

Query: 500 ICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSS 559
           +  L   E +    L+      E    + LC+++  ++  RL Y             L++
Sbjct: 233 VHRLILGEFKDERNLEIF----EPSIMEGLCDVT--IDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 560 LKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHS 619
           +  + +   S +    +V    K + + I  C  LK  P   +      L+ L +     
Sbjct: 287 VSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQ-LKQFPTLDL----PFLKSLTLTMNKG 340

Query: 620 LTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCI 679
                +V LP SL  LD+ R N +            S     ++ L +L +S        
Sbjct: 341 SISFKKVALP-SLSYLDLSR-NALSF------SGCCSYSDLGTNSLRHLDLSFN-GAI-- 389

Query: 680 FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER--LDNNTSLETINISNCENLK 737
                + A    L        ++ LD      L+ + E     +   L  ++IS      
Sbjct: 390 ----IMSANFMGL------EELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 738 ILSSGLHNLCQLQQIGIGGCGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKG-LHNLT 795
                   L  L  + + G    ++           L  L++  C+ LE +  G    L 
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLH 497

Query: 796 SLQQLTIIGGELPSLEEDGLP--TNLHSLRIEGNM--GIWKSMIERGRGFHRFSSLRYLL 851
            LQ L +    L  L+        +L +L    N        +       H   SL +  
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL------QHFPKSLAFFN 551

Query: 852 IRG----CDDDMVSF 862
           +      C  +   F
Sbjct: 552 LTNNSVACICEHQKF 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 110 LAPSILPKLLKLQRLRVFSLRGYHISE--LPDSVGDLRYLRYLNLSGTNIRTLPESV--- 164
           L    + +L+ L++L   ++    I    LP    +L  L +++LS   I+T+  +    
Sbjct: 119 LESFPIGQLITLKKL---NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 165 --NKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLN-NSNTDSLEETPLGIGKLTCLQTL 221
                    SL +     +  +       IKLH L    N +S       +  L  L   
Sbjct: 176 LRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 14/135 (10%)

Query: 117 KLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPE--SVNKLYNLHSLL 174
             L    LR   L       +  +   L  L++L+   + ++ + E  +   L  L  L 
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 175 LEDCDRLKKLCADM-GNLIKLHHLN---NSNTDSLEETPLGIGKLTCLQTL----CNFV- 225
           +      K     +   L  L+ L    NS  D+           T L  L    C    
Sbjct: 431 ISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQ 487

Query: 226 VGKDSGSGLSELKLL 240
           +       L  L+LL
Sbjct: 488 ISWGVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 696 NLPPSVKVLDVYGCPKLESIAER-LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGI 754
           ++P S K +D+     L+ +      N + L+ +++S CE   I     H L  L  + +
Sbjct: 29  DIPSSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 755 GGCGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEE 812
            G   ++SF  G       L  L   +  +L +L    +  L +L++L +    + S + 
Sbjct: 88  TGN-PIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 813 DGLPTNLHSLRI 824
               +NL +L  
Sbjct: 146 PAYFSNLTNLVH 157

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGD---LRYLRYLNLSGTNIRTLPESVNKLYN 169
           SI  K + L  L    L    +S              LR+L+LS      +  +   L  
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400

Query: 170 LHSLLLEDCDRLKKL--CADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
           L  L  +    LK++   +   +L KL +L+ S T++  +       LT L TL
Sbjct: 401 LQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 6/137 (4%)

Query: 85  FGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDL 144
             +L  +   R  L     + +     PSI+  L  +             S+       L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 145 RYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDS 204
             +  ++L+G +I+ L +     +   SL +  C +LK+      +L  L  L  +    
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRC-QLKQFPT--LDLPFLKSLTLTMNKG 340

Query: 205 LEETPLGIGKLTCLQTL 221
                     L  L  L
Sbjct: 341 S--ISFKKVALPSLSYL 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 5e-07
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 8/195 (4%)

Query: 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCD 179
           K+QRL    +    +  L      +  L+ L+LS  ++  +  +  +   L +L L+   
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN- 334

Query: 180 RLKKLCADMGNLIKLHHL----NNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLS 235
            +  L   +     L +L    N+ + +SL      + +        +  +      GL 
Sbjct: 335 SIVTL--KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 392

Query: 236 ELKLLMHLRG-ALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETE 294
             +         L+   L +V +     + R      +  +       T          E
Sbjct: 393 CKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNE 452

Query: 295 MGVLDMLKPHKNLEQ 309
               ++ +    ++Q
Sbjct: 453 QLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESVNKLYNLHSL 173
              LL    L    L    + ++       ++ L  L +S   +  L      +  L  L
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 174 LLEDCDRLKKLCADMGNLIKLHHLNNSN 201
            L     L  +  +     +L +L   +
Sbjct: 307 DLSHN-HLLHVERNQPQFDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 56/323 (17%), Positives = 114/323 (35%), Gaps = 49/323 (15%)

Query: 535 RLEYLRLRYCEGLVKLPQSSLS-LSSLKEIEIYKCSSLVSFPEVALP--SKLKKIEIREC 591
             + +  +    + KLP + L     ++ + +     +      A      ++K+ +   
Sbjct: 52  NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 109

Query: 592 DALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAE---VQLPLSLKRLDIQRCNKIRTLTV 648
            A++ LP P +      L +L +     L+ +        P  L  L +   N +  +  
Sbjct: 110 -AIRYLP-PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTP-KLTTLSMSN-NNLERI-- 162

Query: 649 EEGIQSSSSRRYTSSL---------LENLAISSCPSLTCI-FSKNEL-----PATLESLE 693
                   + + T+SL         L ++ +S  PSL     S N L     P  +E L+
Sbjct: 163 -----EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217

Query: 694 VGN-----LPPSV----KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLH 744
             +     +   V     +L +     L   A  L N   L  +++S  E  KI+     
Sbjct: 218 ASHNSINVVRGPVNVELTILKLQHN-NLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 745 NLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG 804
            + +L+++ I     L +    G P   L+ L++     L  + +       L+ L +  
Sbjct: 276 KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 333

Query: 805 GELPSLEEDGLPTNLHSLRIEGN 827
             + +L+       L +L +  N
Sbjct: 334 NSIVTLKLSTHH-TLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 38/283 (13%), Positives = 82/283 (28%), Gaps = 56/283 (19%)

Query: 669 AISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETI 728
                P   CI S  +       + +      V                      + + +
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDV------------YFGFEDITLNNQKIV 56

Query: 729 NISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL-PCAKLRRLEIYDCKRLEAL 787
              N    K+ ++ L +  Q++ + +     +E            +++L +     +  L
Sbjct: 57  TFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYL 114

Query: 788 PKGL-HNLTSLQQLTIIGGELPSLEED---GLPTNLHSLRIEGNMGIWKSMIERGRGFHR 843
           P  +  N+  L  L +   +L SL        P  L +L +  N  +    IE    F  
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNN-L--ERIEDD-TFQA 169

Query: 844 FSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLS------S 897
            +SL+ L +                            LT + ++  P+L   +      S
Sbjct: 170 TTSLQNLQLSSN------------------------RLTHVDLSLIPSLFHANVSYNLLS 205

Query: 898 SIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPLIE 940
           ++     + +L       +       +   L  L++    L +
Sbjct: 206 TLAIPIAVEELDASHN-SINVVRG-PVNVELTILKLQHNNLTD 246

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 13/131 (9%)

Query: 71  HLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLR 130
           H+    +    G     L + + +         +S+   L  ++L    +++ L    L 
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMRKLPAALLDSFRQVELLN---LN 83

Query: 131 GYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADM 188
              I E+          ++ L +    IR LP  V   +  L  L+LE    L  L   +
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 142

Query: 189 -GNLIKLHHLN 198
             N  KL  L+
Sbjct: 143 FHNTPKLTTLS 153

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 7e-07
 Identities = 45/310 (14%), Positives = 107/310 (34%), Gaps = 52/310 (16%)

Query: 536 LEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIE-----IRE 590
           LEYL L   + +  +   S +L  L  + I     +     +   + L+++      I +
Sbjct: 68  LEYLNLNGNQ-ITDISPLS-NLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNISD 124

Query: 591 CDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEE 650
              L +L           +  L +   H+L+ ++ +     L  L +   +K++ +T   
Sbjct: 125 ISPLANLT---------KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTPIA 174

Query: 651 GIQSSSSRRYTSSLLENL-----------AISSCPSLTCIF-SKNELPATLESLEVGNLP 698
            +            L +L            ++S  SL       N++   +  +   N+ 
Sbjct: 175 NLTD----------LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI-TDITPV--ANMT 221

Query: 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCG 758
             +  L +    K+  ++  L N + L  + I   +   I  + + +L +L+ + +G   
Sbjct: 222 -RLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN- 275

Query: 759 NLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPT 817
            +        L   +L  L + + +      + +  LT+L  L +    +  +      +
Sbjct: 276 QISDISVLNNLS--QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLS 333

Query: 818 NLHSLRIEGN 827
            + S      
Sbjct: 334 KMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 55/379 (14%), Positives = 117/379 (30%), Gaps = 86/379 (22%)

Query: 556 SLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIW 615
            L+      + K S +           + K+ +     + S+         ++LE L + 
Sbjct: 20  DLAEGIRAVLQKAS-VTDVVTQEELESITKLVVAGEK-VASIQGIEYL---TNLEYLNLN 74

Query: 616 DCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPS 675
               +T I+ +   + L  L I   NKI  ++                     A+ +  +
Sbjct: 75  GNQ-ITDISPLSNLVKLTNLYI-GTNKITDIS---------------------ALQNLTN 111

Query: 676 LTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCE 734
           L  +  +++ + + +  L   NL   +  L++     L  ++  L N T L  + ++  +
Sbjct: 112 LRELYLNEDNI-SDISPL--ANLT-KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK 166

Query: 735 NLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHN 793
              +  + + NL  L  + +     +E       L    L     Y  + +  +   + N
Sbjct: 167 VKDV--TPIANLTDLYSLSLNYN-QIEDISPLASLT--SLHYFTAYVNQ-ITDIT-PVAN 219

Query: 794 LTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR 853
           +T L  L I   ++  L      + L  L I  N       I         + L+ L + 
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ------ISDINAVKDLTKLKMLNVG 273

Query: 854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDC 913
                                      ++ +S             + +L  L  L L + 
Sbjct: 274 SN------------------------QISDIS------------VLNNLSQLNSLFLNNN 297

Query: 914 PKLKYFPEKGLPSSLLQLR 932
            +L     + +   L  L 
Sbjct: 298 -QLGNEDMEVI-GGLTNLT 314

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 48/308 (15%), Positives = 108/308 (35%), Gaps = 50/308 (16%)

Query: 536 LEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIREC---- 591
                L+       + Q  L   S+ ++ +     + S   +   + L+ + +       
Sbjct: 24  GIRAVLQKASVTDVVTQEELE--SITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQITD 80

Query: 592 -DALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEE 650
              L +L           L  L I     +T I+ +Q   +L+ L +   + I  +    
Sbjct: 81  ISPLSNLV---------KLTNLYIGTNK-ITDISALQNLTNLRELYLNE-DNISDI---S 126

Query: 651 GIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGN-----LPP-----S 700
            + + +        + +L + +  +L+ +   + +   L  L V       + P      
Sbjct: 127 PLANLTK-------MYSLNLGANHNLSDLSPLSNMTG-LNYLTVTESKVKDVTPIANLTD 178

Query: 701 VKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNL 760
           +  L +    ++E I   L + TSL        +   I  + + N+ +L  + IG    +
Sbjct: 179 LYSLSLNYN-QIEDI-SPLASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNN-KI 233

Query: 761 ESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNL 819
                   L   +L  LEI   + +  +   + +LT L+ L +   ++  +      + L
Sbjct: 234 TDLSPLANLS--QLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQL 289

Query: 820 HSLRIEGN 827
           +SL +  N
Sbjct: 290 NSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHS 172
           S +  L  L ++   +L   H       + ++  L YL ++ + ++ +   +  L +L+S
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181

Query: 173 LLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL---CNFVVGKD 229
           L L    +++ +   + +L  LH+        + +    +  +T L +L    N +    
Sbjct: 182 LSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNKITDLS 237

Query: 230 SGSGLSELKLL 240
             + LS+L  L
Sbjct: 238 PLANLSQLTWL 248

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 5e-05
 Identities = 35/251 (13%), Positives = 84/251 (33%), Gaps = 42/251 (16%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           +     L       L+   ++++  +  +L  +  L ++G  + ++   +  L NL  L 
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLN 72

Query: 175 LEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLC---NFVVGKDSG 231
           L    ++  + + + NL+KL +L       + +    +  LT L+ L    + +      
Sbjct: 73  LNGN-QITDI-SPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISPL 128

Query: 232 SGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREA 291
           + L+++  L +L     +S L             L     L  L +  ++  D       
Sbjct: 129 ANLTKMYSL-NLGANHNLSDLSP-----------LSNMTGLNYLTVTESKVKD------- 169

Query: 292 ETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMC--TALPSV 349
                 +  +    +L    +                 ++L +L +    +   T +  V
Sbjct: 170 ------VTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVNQITDITPV 217

Query: 350 GQLPSLKHLTV 360
             +  L  L +
Sbjct: 218 ANMTRLNSLKI 228

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 7e-07
 Identities = 59/428 (13%), Positives = 129/428 (30%), Gaps = 58/428 (13%)

Query: 536 LEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEI------- 588
           LEYL L + + LVK+        +LK +++   ++  + P       + +++        
Sbjct: 71  LEYLDLSHNK-LVKIS--CHPTVNLKHLDLS-FNAFDALPICKEFGNMSQLKFLGLSTTH 126

Query: 589 ---RECDALKSLPEPWM----------CDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRL 635
                   +  L    +           +    L+       H +    +    +    +
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 636 DIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCI-FSKNELPATLESLEV 694
                 ++  +         S      + L+     S  +L  I  + N     L+ +  
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-- 244

Query: 695 GNLPPSVKVLDVYGCPKLESIAERLDN--NTSLETINISNCEN--LKILSSGLHNLCQLQ 750
                +V    +        +  R  +   TSL+ ++I    +       S ++ +    
Sbjct: 245 --WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 751 QIGIGGCGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPS 809
            I                   +    L+  +    + + +   +LT L+ L +   +L  
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 810 LEE-----DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPP 864
           L +       +  +L  L I  N     S  E+        SL  L +            
Sbjct: 363 LSKIAEMTTQM-KSLQQLDISQN---SVSYDEKKGDCSWTKSLLSLNMSSN-----ILTD 413

Query: 865 EPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGL 924
                       LP  +  L +     ++S+   +V L+ L +L +    +LK  P+ G+
Sbjct: 414 TIFRC-------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPD-GI 463

Query: 925 PSSLLQLR 932
              L  L+
Sbjct: 464 FDRLTSLQ 471

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 51/336 (15%), Positives = 98/336 (29%), Gaps = 30/336 (8%)

Query: 502 SLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLK 561
            LK L +     L+                L     Y      EGL      SL +    
Sbjct: 116 QLKFLGLSTT-HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 562 EIEIYKC--SSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDC-- 617
             E +     S+ +   + L +    +E  +C    S+      +   S   L   +   
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 618 HSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLT 677
           +S   I ++    ++    I             G        Y+ + L+ L+I    S  
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQ-------GQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 678 CIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLK 737
             F ++ +     ++ + N   S   +    CP            +    ++ SN     
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP---------SKISPFLHLDFSNNLLTD 338

Query: 738 ILSSGLHNLCQLQQIGIGGCGNLESFPEG-----GLPCAKLRRLEIYDCKRLEALPKGL- 791
            +     +L +L+ + +     L+   +       +    L++L+I          KG  
Sbjct: 339 TVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMK--SLQQLDISQNSVSYDEKKGDC 395

Query: 792 HNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGN 827
               SL  L +    L       LP  +  L +  N
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 52/266 (19%), Positives = 87/266 (32%), Gaps = 19/266 (7%)

Query: 134 ISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADMGNL 191
           ISEL  S    L  LR L +S   I+ L  SV      L  L L    +L K+       
Sbjct: 33  ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PT 89

Query: 192 IKLHHLN-NSNT-DSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEI 249
           + L HL+ + N  D+L       G ++ L+ L        S + L +  +L      L I
Sbjct: 90  VNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGL------STTHLEKSSVLPIAH--LNI 140

Query: 250 SKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQ 309
           SK+  V      ++   +G ++     L     T+       +  +  +  L+   N++ 
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE-LSNIKC 199

Query: 310 FGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMC-TALPSVGQLPSLKHLTVRGVSRVKR 368
                                 L  L   +      +   + QL     +    +S VK 
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK- 258

Query: 369 LGSEFYGDDSPIPFPCLETLRFEDLQ 394
           L  +    D       L+ L    + 
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVV 284

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 7e-07
 Identities = 76/421 (18%), Positives = 142/421 (33%), Gaps = 58/421 (13%)

Query: 535 RLEYLRLRYC--EGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPS--KLKKIEIRE 590
            L+ L L     + L        + SSLK++E+     +  F      +  +L  + +  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNN 204

Query: 591 CDALKSLPE-PWMCDTSSSLEILKIWDCHSLTYIAEVQL----PLSLKRLDIQRCNKIRT 645
                SL E   +   ++S+  L + +   L+  +          +L  LD+   N +  
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSY-NNLNV 262

Query: 646 LTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLD 705
           +   +              LE   +    ++  +FS +     L ++   NL  S     
Sbjct: 263 VG-NDSFAWLPQ-------LEYFFLEYN-NIQHLFSHS--LHGLFNVRYLNLKRSFTKQS 311

Query: 706 VYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGG-CGNLESFP 764
           +      +           LE +N+ + +   I S+    L  L+ + +     +L +  
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 765 EG---GLPCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQLTI----IGGELPSLEEDGLP 816
                 L  + L  L +    ++  +       L  L+ L +    IG EL   E  GL 
Sbjct: 372 NETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 817 TNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLP 876
            N+  + +  N       + R   F    SL+ L++R      V   P           P
Sbjct: 431 -NIFEIYLSYNK---YLQLTRN-SFALVPSLQRLMLRRVALKNVDSSP-------SPFQP 478

Query: 877 LPA---------SLTSLSIAFFPNLESLSSSIVDLQ--NLTKLTLYDCPKLKYFPEKGLP 925
           L           ++ +++      LE L   I+DLQ  NL +L  +  P    +  KGL 
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKL--EILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 926 S 926
            
Sbjct: 537 H 537

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 80/490 (16%), Positives = 148/490 (30%), Gaps = 93/490 (18%)

Query: 535 RLEYLRLRYCEGLVKLPQSSLS-LSSLKEIEIYKCSSLVSFPEVAL--PSKLKKIEIREC 591
            L+ L L++ E L +L   + +  ++L E+ +   S +             L  +++   
Sbjct: 74  MLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN 131

Query: 592 DALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQL----PLSLKRLDIQRCNKIRTLT 647
             L S           +L+ L + +   +  +   +L      SLK+L++   N+I+  +
Sbjct: 132 -GLSSTKLGT-QVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSS-NQIKEFS 187

Query: 648 VEEGIQSSSSRRY--------TSSLLENLAIS-SCPSLTCI-FSKNELPATLESLEVGNL 697
                 +                SL E L +  +  S+  +  S ++L  T  +  +G  
Sbjct: 188 -PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 698 PPSVKVLDVYGCPKLESIAER-LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGG 756
             ++ +LD+     L  +          LE   +       + S  LH L  ++ + +  
Sbjct: 247 WTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 757 --------CGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQL-----TI 802
                     +L    +        L  L + D             L +L+ L       
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 803 IGGELPSLEEDGLP-TNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVS 861
               L +     L  + LH L +  N  I  S IE    F     L  L +         
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNK-I--SKIESD-AFSWLGHLEVLDLGLN------ 415

Query: 862 FPPEPEDRRLGTTLPLPA--SLTSL----------------SIAFFPNLESLS------- 896
                    +G  L       L ++                S A  P+L+ L        
Sbjct: 416 --------EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 897 ------SSIVDLQNLTKLTLYDCPKLKYFPEKGLPS--SLLQLRIYRCPLIEEKCRKDGG 948
                 S    L+NLT L L +   +    +  L     L  L +    L       + G
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 949 QYWDLLTHIP 958
                L  + 
Sbjct: 527 GPIYFLKGLS 536

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 18/142 (12%)

Query: 696 NLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIG 755
           +LP ++ VL++         A      + L ++++      K+       L  L+ + + 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 756 GCGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQL--------TIIGG 805
               L    +     C  L  L +     ++ +         +L  L        +   G
Sbjct: 82  HN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 806 ELPSLEEDGLPTNLHSLRIEGN 827
               L       NL  L +  N
Sbjct: 140 TQVQL------ENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 22/129 (17%)

Query: 119 LKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLE 176
           LK   L +  L   +++ + +     L  L Y  L   NI+ L   S++ L+N+  L L+
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 177 DCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLC---NFVVGKDSGS- 232
                        +  K      S     +        L CL+ L    N + G  S   
Sbjct: 305 ------------RSFTKQSISLASLP---KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 233 -GLSELKLL 240
            GL  LK L
Sbjct: 350 TGLINLKYL 358

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 13/137 (9%)

Query: 113 SILPKLLK-LQRLRVFSLRGYHISE-LPDSVGD---LRYLRYLNLSGTNIRTLPESV--- 164
              P     + RL    L    +   L + +        +R L+LS + + T   +    
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 165 NKLYNLHSLLLEDCDRLKKLCADM-GNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLC- 222
            K  NL  L L     L  +  D    L +L +      +        +  L  ++ L  
Sbjct: 245 LKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 223 --NFVVGKDSGSGLSEL 237
             +F     S + L ++
Sbjct: 304 KRSFTKQSISLASLPKI 320

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 9e-04
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 118 LLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPE---SVNKLYNLHSL 173
            +K + L    L    +S         L  L+ L LS   I+ L      +    +L  L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 174 LLEDCDRLKKLCADM-GNLIKLHHL---NNSNTDSLEETPLGIGKLTCLQTL 221
            L    ++K+        + +L  L   N     SL E        T ++ L
Sbjct: 177 ELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 121 LQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDCD 179
              L+   L   H+SELP  +  L  L+ L LS      L +   +   +L  L ++   
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 180 RLKKLCADM-GNLIKLHHLNNSNTD--SLEETPLGIGKLTCLQTL 221
           +  +L      NL  L  L+ S+ D  + +   L +  L+ LQ+L
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 67/352 (19%), Positives = 114/352 (32%), Gaps = 53/352 (15%)

Query: 613 KIWDCH--SLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAI 670
           K ++C    L  I    LP S + L+    N + T      IQ+++  R  +  L  L +
Sbjct: 15  KTYNCENLGLNEIPG-TLPNSTECLEFSF-NVLPT------IQNTTFSRLIN--LTFLDL 64

Query: 671 SSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINI 730
           + C  +  I        T +S         +  L +   P +      L    +L+ +  
Sbjct: 65  TRC-QIYWI-----HEDTFQSQ------HRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 731 SNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPK 789
                  I    LHN   L+ + +G   ++ S       P  KL+ L+  +   +  L K
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA-IHYLSK 170

Query: 790 G-LHNLTSLQQLTII--GGELPSLEEDGLP-TNLHSLRIEGNMGIWKSMIERGRGFHRFS 845
             + +L     L++   G ++  +E          SL   G       +I +G       
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQ 228

Query: 846 SLRYLLIRGCDDDMVSFPPEPEDRRL-GTTLPLPA-SLTSLSIAFFPNLESL-------- 895
           SL        DD+ +S         +   ++ L      ++S   F     L        
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 896 -----SSSIVDLQNLTKLTLYDCPKLKYFPE---KGLPSSLLQLRIYRCPLI 939
                 S +V L  L KL L    K +   +      P SL  L I      
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFP-SLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 69/440 (15%), Positives = 146/440 (33%), Gaps = 70/440 (15%)

Query: 535 RLEYLRLRYCEGLVKLPQSSLS-LSSLKEIEIYKCS-SLVSFPEVALPS-KLKKIEIREC 591
           +L+ L  +    +  L +  +S L     + +      +      A  S   + +     
Sbjct: 154 KLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 592 DALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLP----LSLKRLDIQRCNKIRTLT 647
             L  + +     T  SL +    D      I+         +S++ +++Q+ +    + 
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQK-HYFFNI- 269

Query: 648 VEEGIQSSSSRRYTSSLLENLAISSCPSLTCIF-SKN---ELPATLESLEVGNLPPSVKV 703
                              +        L  +  +     ELP+ L  L       ++K 
Sbjct: 270 ------------------SSNTFHCFSGLQELDLTATHLSELPSGLVGL------STLKK 305

Query: 704 LDVYGCPKLESIAER-LDNNTSLETINIS-NCENLKILSSGLHNLCQLQQIGIGGC--GN 759
           L +    K E++ +    N  SL  ++I  N + L++ +  L NL  L+++ +       
Sbjct: 306 LVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 760 LESFPEGGLPCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEEDGLPTN 818
            +         + L+ L +   +   +L          L+ L +    L   +      N
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 819 LHSLR---IEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLG--T 873
           LH L+   +  ++ +   +      F    +L++L ++G      +       + LG   
Sbjct: 424 LHLLKVLNLSHSL-L--DISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 874 TLPLPA-SLTSLSIAFFPNLESL-----------SSSIVDLQNLTKLTLY-DCPKLKYFP 920
            L L    L+S+    F +L+ +           SSSI  L +L  + L      +    
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIIL 539

Query: 921 EKGLP--SSLLQLRIYRCPL 938
              LP  S    + + + PL
Sbjct: 540 PSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 121 LQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDC 178
           L  L    L    I  + +        L  L L+   +  + E+  +    L  L     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 179 DRLKKLCADM-GNLIKLHHLN-NSNTDSLEETPLG-IGKLTCLQTL 221
             +  +      N   L  L   SN   +    L        L+ L
Sbjct: 116 -GISSIDFIPLHNQKTLESLYLGSN--HISSIKLPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 8e-04
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 6/108 (5%)

Query: 117 KLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLL 175
            +  L       +    IS           +  +NL       +  +  +    L  L L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 176 EDCDRLKKLCADMGNLIKLHHLN-NSNTDSLEE-TPLGIGKLTCLQTL 221
                L +L + +  L  L  L  ++N    E    +       L  L
Sbjct: 286 TAT-HLSELPSGLVGLSTLKKLVLSAN--KFENLCQISASNFPSLTHL 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 50/265 (18%), Positives = 96/265 (36%), Gaps = 72/265 (27%)

Query: 616 DCHS--LTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSC 673
            C+S  LT +    +P S  RL+++  NK+++      +      + T   L  L++SS 
Sbjct: 13  RCNSKGLTSVPT-GIPSSATRLELES-NKLQS------LPHGVFDKLTQ--LTKLSLSSN 62

Query: 674 ---------------PSLTCIF-SKNE---LPATLESLEVGNLPPSVKVLDVYGCPKLES 714
                           SL  +  S N    + +    L        ++ LD      L+ 
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL------EQLEHLDFQHS-NLKQ 115

Query: 715 IAER--LDNNTSLETINISNCENLKILSSG-LHNLCQLQQIGIGGCGNLESFPEGGL-PC 770
           ++E     +  +L  ++IS+  + ++  +G  + L  L+ + + G    E+F        
Sbjct: 116 MSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 771 AKLRRLEIYDCKRLEALPKG-LHNLTSLQ-------QLTIIGGE----LPSLEE------ 812
             L  L++  C +LE L     ++L+SLQ           +       L SL+       
Sbjct: 175 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 813 ----------DGLPTNLHSLRIEGN 827
                        P++L  L +  N
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 110 LAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYN 169
           L   +  KL +L +L + S           S      L+YL+LS   + T+  +   L  
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102

Query: 170 LHSLLLEDCDRLKKLCADM--GNLIKLHHLNNSNTDSLEETPLGI-GKLTCLQTL 221
           L  L  +    LK++       +L  L +L+ S+T        GI   L+ L+ L
Sbjct: 103 LEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVL 155

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 64/345 (18%), Positives = 117/345 (33%), Gaps = 41/345 (11%)

Query: 502 SLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLS-LSSL 560
            L   E R    L+      +K   + LC L+  +E  RL Y +  +       + L+++
Sbjct: 231 RLVLGEFRNEGNLEKF----DKSALEGLCNLT--IEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 561 KEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSL 620
               +   + +    + +     + +E+  C      P   +     SL+ L        
Sbjct: 285 SSFSLVSVT-IERVKDFSYNFGWQHLELVNCK-FGQFPTLKL----KSLKRLTFTSNKGG 338

Query: 621 TYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTS----SLLENL------AI 670
              +EV LP SL+ LD+ R N +      +G  S S    TS     L  N         
Sbjct: 339 NAFSEVDLP-SLEFLDLSR-NGLS----FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

Query: 671 SSCPSLTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETIN 729
                L  + F  + L    E     +L  ++  LD+       +     +  +SLE + 
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 730 ISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLP-CAKLRRLEIYDCKRLEA 786
           ++   + +   L      L  L  + +  C  LE          + L+ L +       +
Sbjct: 452 MAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFS 508

Query: 787 LPKG-LHNLTSLQQLTIIGGELPSLEED---GLPTNLHSLRIEGN 827
           L       L SLQ L      + + ++      P++L  L +  N
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 696 NLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIG 755
           NLP S K LD+   P     +    +   L+ +++S CE   I      +L  L  + + 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 756 GCGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG 814
           G   ++S   G     + L++L   +          + +L +L++L +    + S +   
Sbjct: 85  GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 815 LPTNLHSLRI 824
             +NL +L  
Sbjct: 144 YFSNLTNLEH 153

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 118 LLKLQRLRVFSLRGYHIS--ELPDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLL 174
           +  L+ L+  ++    I   +LP+   +L  L +L+LS   I+++    +  L+ +  L 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 175 LE---DCDRLKKLCADMGNLIKLHHLN-NSNTDSLEETPLGIGKLTCLQTL 221
           L      + +  +       I+LH L   +N DSL      I  L  L+  
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 73/433 (16%), Positives = 147/433 (33%), Gaps = 62/433 (14%)

Query: 531 ELSCRLEYLRLRYCEGLVKLPQSSLS-LSSLKEIEIYKCSSLVSFPEVALP--SKLKKIE 587
            L    + L L +   L  L   S      L+ +++ +C  + +  + A    S L  + 
Sbjct: 25  NLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLI 82

Query: 588 IRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPL--SLKRLDIQRCNKIRT 645
           +     ++SL        SS L+ L   + + L  +    +    +LK L++   N I++
Sbjct: 83  LTGNP-IQSLALGAFSGLSS-LQKLVAVETN-LASLENFPIGHLKTLKELNVAH-NLIQS 138

Query: 646 LTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLD 705
             + E   + ++       LE+L +SS   +  I+        L  L    +P     LD
Sbjct: 139 FKLPEYFSNLTN-------LEHLDLSSN-KIQSIY-----CTDLRVLH--QMPLLNLSLD 183

Query: 706 VYGCPKLESIAERLDNNTSLETINIS-NCENLKILSSGLHNLCQLQQI-----GIGGCGN 759
           +   P +  I         L  + +  N ++L ++ + +  L  L+            GN
Sbjct: 184 LSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 760 LESFPEGGLPCAKLRRLEIYDCKRLEA----LPKGLHNLTSLQQLTIIGGELPSLEEDGL 815
           LE F +  L       +E +    L+     +    + LT++   +++   +  +++   
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 816 PTNLHSLRIEGNM------GIWKSM---------IERGRGFHRFSSLRYLLIRGCDDDMV 860
                 L +             KS+                    SL +L +        
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 861 SFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFP 920
               +       +      SL  L ++ F  + ++SS+ + L+ L  L       LK   
Sbjct: 363 GCCSQ-------SDFGTT-SLKYLDLS-FNGVITMSSNFLGLEQLEHLDFQHS-NLKQMS 412

Query: 921 EKGLPSSLLQLRI 933
           E  +  SL  L  
Sbjct: 413 EFSVFLSLRNLIY 425

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 118 LLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLL 175
                 L+V  L    I  +   +   L +L  L L+G  I++L     + L +L  L+ 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 176 EDCDRLKKL-CADMGNLIKLHHLN-NSNTDSLEETPLGIGKLTCLQTL 221
            +   L  L    +G+L  L  LN   N     + P     LT L+ L
Sbjct: 108 VET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESVNKLYNLHSL 173
              LL    L    L    + ++       ++ L  L +S   +  L      +  L  L
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 174 LLEDCDRLKKLCADMGNLIKLHHLNNSN 201
            L     L  +  +     +L +L   +
Sbjct: 301 DLSHN-HLLHVERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 56/323 (17%), Positives = 114/323 (35%), Gaps = 49/323 (15%)

Query: 535 RLEYLRLRYCEGLVKLPQSSLS-LSSLKEIEIYKCSSLVSFPEVALP--SKLKKIEIREC 591
             + +  +    + KLP + L     ++ + +     +      A      ++K+ +   
Sbjct: 46  NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 103

Query: 592 DALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAE---VQLPLSLKRLDIQRCNKIRTLTV 648
            A++ LP P +      L +L +     L+ +        P  L  L +   N +  +  
Sbjct: 104 -AIRYLP-PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTP-KLTTLSMSN-NNLERI-- 156

Query: 649 EEGIQSSSSRRYTSSL---------LENLAISSCPSLTCI-FSKNEL-----PATLESLE 693
                   + + T+SL         L ++ +S  PSL     S N L     P  +E L+
Sbjct: 157 -----EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211

Query: 694 VGN-----LPPSV----KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLH 744
             +     +   V     +L +     L   A  L N   L  +++S  E  KI+     
Sbjct: 212 ASHNSINVVRGPVNVELTILKLQHN-NLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFV 269

Query: 745 NLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG 804
            + +L+++ I     L +    G P   L+ L++     L  + +       L+ L +  
Sbjct: 270 KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 327

Query: 805 GELPSLEEDGLPTNLHSLRIEGN 827
             + +L+       L +L +  N
Sbjct: 328 NSIVTLKLSTHH-TLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCD 179
           K+QRL    +    +  L      +  L+ L+LS  ++  +  +  +   L +L L+   
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN- 328

Query: 180 RLKKLCADMGNLIKLHHLN 198
            +  L   +     L +L 
Sbjct: 329 SIVTL--KLSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 13/131 (9%)

Query: 71  HLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLR 130
           H+    +    G     L + + +         +S+   L  ++L    +++ L    L 
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVT------FKNSTMRKLPAALLDSFRQVELLN---LN 77

Query: 131 GYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADM 188
              I E+          ++ L +    IR LP  V   +  L  L+LE    L  L   +
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGI 136

Query: 189 -GNLIKLHHLN 198
             N  KL  L+
Sbjct: 137 FHNTPKLTTLS 147

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 34/250 (13%), Positives = 73/250 (29%), Gaps = 36/250 (14%)

Query: 710 PKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL- 768
           P+ + I   L  +     ++I               L   + +       +   P   L 
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLD 66

Query: 769 PCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEEDGLP--TNLHSLRIE 825
              ++  L + D + +E +         ++Q+L +    +  L          L  L +E
Sbjct: 67  SFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 826 GNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPA------ 879
            N  +  S + RG  FH    L  L +   +  +             T     +      
Sbjct: 126 RND-L--SSLPRGI-FHNTPKLTTLSMSNNN--LERIED-------DTFQATTSLQNLQL 172

Query: 880 ---SLTSLSIAFFPNLESLS------SSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQ 930
               LT + ++  P+L   +      S++     + +L       +           L  
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRGPVN-VELTI 230

Query: 931 LRIYRCPLIE 940
           L++    L +
Sbjct: 231 LKLQHNNLTD 240

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 40/321 (12%), Positives = 93/321 (28%), Gaps = 59/321 (18%)

Query: 607 SSLEILKIWDCHSLTYIAE---VQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSS 663
           ++ +I+   +   +  +           ++ L++    +I  +                 
Sbjct: 45  NNQKIVTFKNST-MRKLPAALLDSFR-QVELLNLND-LQIEEIDTY-------------- 87

Query: 664 LLENLAISSCPSLTCIF-SKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERL-DN 721
                A +   ++  ++   N +   L      N+P  + VL +     L S+   +  N
Sbjct: 88  -----AFAYAHTIQKLYMGFNAI-RYLPPHVFQNVP-LLTVLVLERN-DLSSLPRGIFHN 139

Query: 722 NTSLETINISNCENLKILSSG-LHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYD 780
              L T+++SN  NL+ +          LQ + +     L       +P   L    +  
Sbjct: 140 TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIP--SLFHANVSY 195

Query: 781 CKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRG 840
              L  L        ++++L      +  +        L  L+++ N       +     
Sbjct: 196 N-LLSTLA----IPIAVEELDASHNSINVVRGPVN-VELTILKLQHNN------LTDTAW 243

Query: 841 FHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIV 900
              +  L  + +   +  +                     L  L I+    L +L+    
Sbjct: 244 LLNYPGLVEVDLSYNE--LEKIMYH--------PFVKMQRLERLYISN-NRLVALNLYGQ 292

Query: 901 DLQNLTKLTLYDCPKLKYFPE 921
            +  L  L L     L +   
Sbjct: 293 PIPTLKVLDLSHN-HLLHVER 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 51/246 (20%)

Query: 696 NLPPSVKVLDVYGCPKLESIAER-LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGI 754
           +LPP   +LD+    K+  I +    N  +L T+ + N +  KI       L +L+++ +
Sbjct: 49  DLPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 755 GGCGN-LESFPEGGLPCAKLRRLEIYDCKRLEALPK----GLHNLTSLQ----QLTIIGG 805
               N L+  PE       L+ L +++ + +  + K    GL+ +  ++     L   G 
Sbjct: 108 SK--NQLKELPEKMPK--TLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 806 E------LPSLEE------------DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSL 847
           E      +  L               GLP +L  L ++GN  I  + ++        ++L
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK-I--TKVDAA-SLKGLNNL 218

Query: 848 RYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPN-LESLSSSIVDLQNLT 906
             L +      + +          G+    P  L  L +    N L  +   + D + + 
Sbjct: 219 AKLGLSFNS--ISAVDN-------GSLANTP-HLRELHLNN--NKLVKVPGGLADHKYIQ 266

Query: 907 KLTLYD 912
            + L++
Sbjct: 267 VVYLHN 272

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 33/237 (13%), Positives = 79/237 (33%), Gaps = 45/237 (18%)

Query: 628 LPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIF-SKNELP 686
           +P +L+ L +   N+I  +                S+   L       +  +    N L 
Sbjct: 119 MPKTLQELRVHE-NEITKVR--------------KSVFNGL-----NQMIVVELGTNPL- 157

Query: 687 ATLESLEVG---NLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSG- 742
                +E G    +   +  + +     + +I + L    SL  +++     +  + +  
Sbjct: 158 -KSSGIENGAFQGMK-KLSYIRIADT-NITTIPQGLP--PSLTELHLDGN-KITKVDAAS 211

Query: 743 LHNLCQLQQIGIGGCGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLT 801
           L  L  L ++G+    ++ +   G L     LR L + + K L  +P GL +   +Q + 
Sbjct: 212 LKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVY 269

Query: 802 IIGGELPSLEEDGLP--------TNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL 850
           +    + ++  +            +   + +  N  +    I+    F        +
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPS-TFRCVYVRAAV 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 37/249 (14%), Positives = 81/249 (32%), Gaps = 22/249 (8%)

Query: 626 VQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENL--AISSCPSLTCIFSKN 683
                  + LD+   N    +T     Q   + R   S ++       S   +  +   N
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 684 ELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENL--KILSS 741
            +        + +    ++ L + G    + I   L  N++L  +N+S C       L +
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162

Query: 742 GLHNLCQLQQIGIGGCGNLESFPEGGL---PCAKLRRLEIYDCKR------LEALPKGLH 792
            L +  +L ++ +  C +                + +L +   ++      L  L +   
Sbjct: 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222

Query: 793 NLTSL--QQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGI-WKSMIERGRGFHRFSSLRY 849
           NL  L      ++  +    +E      L  L +     I  ++++E         +L+ 
Sbjct: 223 NLVHLDLSDSVMLKND--CFQEFFQLNYLQHLSLSRCYDIIPETLLE----LGEIPTLKT 276

Query: 850 LLIRGCDDD 858
           L + G   D
Sbjct: 277 LQVFGIVPD 285

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 34/235 (14%), Positives = 65/235 (27%), Gaps = 50/235 (21%)

Query: 428 TFPEHLPVLEMLVIEGCE---ELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVV 484
                   L+ L +EG      ++ ++     L +  + GC                   
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF---------------- 155

Query: 485 CRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCR-LEYLRLRY 543
               S  +   LL     L  L +  C               Q         +  L L  
Sbjct: 156 ----SEFALQTLLSSCSRLDELNLSWCFDFTE-------KHVQVAVAHVSETITQLNLSG 204

Query: 544 CEGLVK---LPQSSLSLSSLKEIEIYKCSSL--VSFPEVALPSKLKKIEIREC-----DA 593
               ++   L        +L  +++     L    F E    + L+ + +  C     + 
Sbjct: 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264

Query: 594 LKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTV 648
           L  L E        +L+ L+++    +       L  +L  L I  C+   T+  
Sbjct: 265 LLELGE------IPTLKTLQVFGI--VPDGTLQLLKEALPHLQI-NCSHFTTIAR 310

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 75/475 (15%), Positives = 143/475 (30%), Gaps = 60/475 (12%)

Query: 493 HDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCE-GLVKLP 551
           H    Q +  L  L +  C  L   V ++          L   L  L L   +   + L 
Sbjct: 89  HPDAFQGLFHLFELRLYFC-GLSDAVLKDG-----YFRNLK-ALTRLDLSKNQIRSLYLH 141

Query: 552 QSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECD----ALKSLPEPWMCDTSS 607
            S   L+SLK I+      +    E  L   L+   +        +L S          +
Sbjct: 142 PSFGKLNSLKSIDFSSNQ-IFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 608 SLEILKIWDCH----SLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSS 663
               + +          T         ++ +           +                 
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----GFGFHNIKDP 255

Query: 664 LLENLAISSCPSLTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER-LDN 721
                A  +  S+  +  S   +  +L S     L   +KVL++    K+  IA+     
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFV-FSLNSRVFETLK-DLKVLNLAYN-KINKIADEAFYG 312

Query: 722 NTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL-PCAKLRRLEIYD 780
             +L+ +N+S     ++ SS  + L ++  I +    ++    +       KL+ L++ D
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRD 371

Query: 781 CKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRG 840
                     +H + S+  + + G +L +L +  L    + + +  N       ++    
Sbjct: 372 NALTT-----IHFIPSIPDIFLSGNKLVTLPKINL--TANLIHLSEN---RLENLDILYF 421

Query: 841 FHRFSSLRYLLIRGCDDDMVS----FPPEPEDRRL-----GTTLPLPASLTSLSIAFFPN 891
             R   L+ L++        S        P   +L        L     L         +
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 892 LESL-----------SSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYR 935
           L+ L                 L  L  L+L    +L       LP++L  L I R
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 68/441 (15%), Positives = 139/441 (31%), Gaps = 73/441 (16%)

Query: 410 GFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVV 469
               L+ +      ++       L  L+   +       ++  SL +      G C    
Sbjct: 146 KLNSLKSID-FSSNQIFLVCEHELEPLQGKTLS---FFSLAANSLYSRVSVDWGKCMNPF 201

Query: 470 WESATGHLG-SQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSL------VAEEE 522
                  L  S N      T N         I   ++  +     +         + + +
Sbjct: 202 RNMVLEILDVSGNGWTVDITGN-----FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 523 KDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLS-LSSLKEIEIYKCSSLVSFPEVALPS 581
           ++    L   S  + +L L +   +  L       L  LK + +                
Sbjct: 257 QNTFAGLARSS--VRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYN------------- 300

Query: 582 KLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPL-SLKRLDIQRC 640
           K+ KI     +A   L          +L++L +         +     L  +  +D+Q+ 
Sbjct: 301 KINKIAD---EAFYGLD---------NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK- 347

Query: 641 NKIRTLTVEEGIQSSSSRRYTSSL----LENLAISSCPSLTCIFSKNELPATLESLEVGN 696
           N I  +          + ++   L    L + A+++   +  I         L +L    
Sbjct: 348 NHIAII-------QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP--K 398

Query: 697 LPPSVKVLDVYGCPKLESIAER--LDNNTSLETINISNCENLKILSSGL-HNLCQLQQIG 753
           +  +  ++ +    +LE++     L     L+ + ++                  L+Q+ 
Sbjct: 399 INLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 754 IGGCGNLESFPEGGLP------CAKLRRLEIYDCKRLEALPKG-LHNLTSLQQLTIIGGE 806
           +G    L+   E  L        + L+ L +     L +LP G   +LT+L+ L++    
Sbjct: 458 LGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 807 LPSLEEDGLPTNLHSLRIEGN 827
           L  L  + LP NL  L I  N
Sbjct: 516 LTVLSHNDLPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 94/547 (17%), Positives = 175/547 (31%), Gaps = 73/547 (13%)

Query: 121 LQRLRVFSLRGYHISEL--PDSVGDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLED 177
           L++L++  L   +       ++  +L  LR L+L  + I  L       L++L  L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 178 CDRLKKLC------ADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL----CNF-VV 226
           C  L           ++  L +L  L+ +   SL   P   GKL  L+++        +V
Sbjct: 107 C-GLSDAVLKDGYFRNLKALTRL-DLSKNQIRSLYLHPS-FGKLNSLKSIDFSSNQIFLV 163

Query: 227 GKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTR-STDG 285
            +     L    L       L  + L +   V   K         L+ L +     + D 
Sbjct: 164 CEHELEPLQGKTLSFFS---LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

Query: 286 SSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLF-SNLVTLEFEDCGMCT 344
           + +            L    ++   G   +            L  S++  L+     + +
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 345 ALPSV-GQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHG 403
               V   L  LK L +      K     FYG         L+ L           +   
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYG------LDNLQVLNLSYNL-----LGEL 329

Query: 404 SGQGVEGFPKLRELHILEC--PKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFL 461
                 G PK+  + + +     ++    + L  L+ L +      L ++  +P++    
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA--LTTIHFIPSIPDIF 387

Query: 462 IGGCKKVVWESATGHLGSQNSVVCRDT--SNQSHDGLLQDICSLKSLEIRGCPKLQSLVA 519
           + G K     +      + N +   +    N      L  +  L+ L +    +  S   
Sbjct: 388 LSGNK---LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSC-- 441

Query: 520 EEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVAL 579
                   Q    +  LE L L     L    ++ L     + +                
Sbjct: 442 -----SGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGL---------------- 479

Query: 580 PSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQR 639
            S L+ + +     L SLP P +    ++L  L +     LT ++   LP +L+ LDI R
Sbjct: 480 -SHLQVLYLNHNY-LNSLP-PGVFSHLTALRGLSLNSNR-LTVLSHNDLPANLEILDISR 535

Query: 640 CNKIRTL 646
            N++   
Sbjct: 536 -NQLLAP 541

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 68/357 (19%), Positives = 121/357 (33%), Gaps = 71/357 (19%)

Query: 600 PWMCDTSSSLEILKIWDCH--SLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSS 657
           P  C+ S+    +    CH      + E  +P   + LD+ + N+I+T      +     
Sbjct: 4   PPRCECSAQDRAV---LCHRKRFVAVPE-GIPTETRLLDLGK-NRIKT------LNQDEF 52

Query: 658 RRYTS-----------SLLENLAISSCPSLTCI-FSKNELPA----------TLESLEVG 695
             +             S +E  A ++  +L  +    N L             L  L++ 
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112

Query: 696 N-----LPP-------SVKVLDVYGCPKLESIAER-LDNNTSLETINISNCENLKILSSG 742
                 L         ++K L+V     L  I+ R      SLE + +  C NL  + + 
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTE 170

Query: 743 -LHNLCQLQQIGIGGCGNLESFPEGGL-PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQL 800
            L +L  L  + +    N+ +  +       +L+ LEI     L+ +        +L  L
Sbjct: 171 ALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 801 TIIGGELPSLEEDGLP--TNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD 858
           +I    L ++    +     L  L +  N  I  S IE     H    L+ + + G    
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNP-I--STIEGS-MLHELLRLQEIQLVGG--Q 283

Query: 859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVD-LQNLTKLTLYDCP 914
           +    P            L   L  L+++    L +L  S+   + NL  L L   P
Sbjct: 284 LAVVEP-------YAFRGLN-YLRVLNVS-GNQLTTLEESVFHSVGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 121 LQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDC 178
           L  L   +L   +++ +P      L  L  L L   NI  + +    +LY L  L +   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 179 DRLKKLCADMGNLIKLHHLNNSNTDSLEETPLG-IGKLTCLQTL 221
             L  +  +    + L  L+ ++  +L   P   +  L  L+ L
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFL 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 8/114 (7%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNL 170
           ++ P  L    L   S+   +++ +P      L YLR+LNLS   I T+  S+ ++L  L
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 171 HSLLLEDCDRLKKLCADM-GNLIKLHHLN--NSNTDSLEETPLGIGKLTCLQTL 221
             + L    +L  +       L  L  LN   +   +LEE+      +  L+TL
Sbjct: 275 QEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF--HSVGNLETL 325

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 5e-06
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 26/186 (13%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
                +L  +         I  +   +  L  +  L L+G  +  + + +  L NL  L 
Sbjct: 36  AVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLF 93

Query: 175 LEDCDRLKKLCADMGNLIKLHHLNNSNTD--SLEETPLGIGKLTCLQTLC---NFVVGKD 229
           L++  ++K L + + +L KL  L+  +     +     G+  L  L++L    N +    
Sbjct: 94  LDEN-KIKDLSS-LKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDIT 147

Query: 230 SGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDG-----------KKNLKELLLR 278
             S L++L  L  L    +IS +  +  +   +   L              KNL  L L 
Sbjct: 148 VLSRLTKLDTL-SLEDN-QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205

Query: 279 WTRSTD 284
                +
Sbjct: 206 SQECLN 211

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 1e-05
 Identities = 39/275 (14%), Positives = 89/275 (32%), Gaps = 63/275 (22%)

Query: 583 LKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNK 642
           LKK  + +      L          S++ +   +   +  +  +Q   ++ +L +   NK
Sbjct: 28  LKKKSVTDAVTQNELN---------SIDQIIANNSD-IKSVQGIQYLPNVTKLFLNG-NK 76

Query: 643 IRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCI-FSKNELPATLESLEVGNLPPSV 701
           +  +                       +++  +L  +   +N++   L SL+  +L   +
Sbjct: 77  LTDIK---------------------PLTNLKNLGWLFLDENKI-KDLSSLK--DLK-KL 111

Query: 702 KVLDVYGCPKLESIAERLDNNTSLETINIS-----------NCENLKILS---------S 741
           K L +     +  I   L +   LE++ +                L  LS          
Sbjct: 112 KSLSLEHN-GISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 169

Query: 742 GLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQL 800
            L  L +LQ + +    ++       GL    L  LE++  + L        NL     +
Sbjct: 170 PLAGLTKLQNLYLSKN-HISDLRALAGLK--NLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 801 TIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMI 835
               G L + E      +     ++ ++  + + +
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 27/203 (13%), Positives = 64/203 (31%), Gaps = 55/203 (27%)

Query: 715 IAERLDNNTSLETI-NISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773
           + E +  +T ++ I            +        L++  +                  +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDN--------LKKKSVTDAVTQNELN-------SI 45

Query: 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKS 833
            ++   +   ++++ +G+  L ++ +L + G +L  ++      NL  L ++ N      
Sbjct: 46  DQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN------ 97

Query: 834 MIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLS-IAFFPNL 892
            I+          L+ L +                            ++ ++ +   P L
Sbjct: 98  KIKDLSSLKDLKKLKSLSLEHN------------------------GISDINGLVHLPQL 133

Query: 893 ESLS------SSIVDLQNLTKLT 909
           ESL       + I  L  LTKL 
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLD 156

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHS 172
           + +  L +L +L   SL    IS++   +  L  L+ L LS  +I  L  ++  L NL  
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDV 201

Query: 173 LLLEDCDRLKKLCADMGNLIKLHHLNNSN 201
           L L   + L K      NL+  + + N++
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTD 230

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 6e-06
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 38/140 (27%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYL-----------------RYLNLSGTNI 157
           LP  L   ++ V  +    +  LP+    L YL                 ++L++    +
Sbjct: 74  LPDNL-PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQL 132

Query: 158 RTLPESVNKLYNLH------SLLLEDCDRLKKLCAD----------MGNLIKLHHLNNSN 201
             LPE    L  ++      ++L E    L+ L               +L  L    N  
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-- 190

Query: 202 TDSLEETPLGIGKLTCLQTL 221
              LE  P    +    +  
Sbjct: 191 --LLESLPAVPVRNHHSEET 208

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           LP+L     L V S+R   ++ LP+       L  L++S   + +LP    + ++     
Sbjct: 155 LPELP--TSLEVLSVRNNQLTFLPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETE 209

Query: 175 LE-DCD--RLKKLCADMGNLIKLHHLNNSN 201
           +   C   R+  +  ++ +L     +   +
Sbjct: 210 IFFRCRENRITHIPENILSLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 64/333 (19%), Positives = 110/333 (33%), Gaps = 64/333 (19%)

Query: 571 LVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPL 630
            VS  +  L ++  ++++   + L SLP+    +    + +L+I     L  + E  LP 
Sbjct: 49  AVSLLKECLINQFSELQLNRLN-LSSLPD----NLPPQITVLEITQNA-LISLPE--LPA 100

Query: 631 SLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLE 690
           SL+ LD    N++ TL   E   S          L++L + +   LT       LP    
Sbjct: 101 SLEYLDA-CDNRLSTLP--ELPAS----------LKHLDVDNNQ-LT------MLPELPA 140

Query: 691 SLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQ 750
            LE          ++     +L  + E     TSLE +++ N   L  L     +L  L 
Sbjct: 141 LLEY---------INADNN-QLTMLPELP---TSLEVLSVRNN-QLTFLPELPESLEALD 186

Query: 751 QIGIGGCGN--LESFPEGGLPCAKLRRLEIY-DCK--RLEALPKGLHNLTSLQQLTIIGG 805
                      LES P   +        EI+  C+  R+  +P+ + +L     + +   
Sbjct: 187 ------VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240

Query: 806 ELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPE 865
            L S   + L          G    +     +    HR            D     FP  
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR---------PLADAVTAWFPEN 291

Query: 866 PEDRRLGTTLPLPASLTSLSIAFFPNLESLSSS 898
            +               +    F   L+ LS +
Sbjct: 292 KQSDVSQIWHAFEHEEHAN--TFSAFLDRLSDT 322

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 14/111 (12%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           LP+L     L   +     ++ LP+       L  L++    +  LPE      +L +L 
Sbjct: 135 LPELP--ALLEYINADNNQLTMLPELPT---SLEVLSVRNNQLTFLPEL---PESLEALD 186

Query: 175 LEDCDRLKKLCADMGNLIKL----HHLNNSNTDSLEETPLGIGKLTCLQTL 221
           +     L+ L A                      +   P  I  L    T+
Sbjct: 187 VSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTI 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 33/229 (14%), Positives = 86/229 (37%), Gaps = 25/229 (10%)

Query: 631 SLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENL-AISSCPSLTCI-FSKNELPAT 688
           +  ++   + + +     +  +   ++     + +  +  +    +L  +    N++   
Sbjct: 20  NAIKIAAGK-SNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-TD 77

Query: 689 LESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQ 748
           L  L+  NL   +  L++ G   L+++   +    S++T+++++ +   +  + L  L  
Sbjct: 78  LAPLK--NLT-KITELELSGN-PLKNV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSN 130

Query: 749 LQQIGIGGCG--NLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGE 806
           LQ + +      N+      GL    L+ L I + + +  L   L NL+ L  L     +
Sbjct: 131 LQVLYLDLNQITNISPL--AGLT--NLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNK 184

Query: 807 LPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGC 855
           +  +       NL  + ++ N       I         S+L  + +   
Sbjct: 185 ISDISPLASLPNLIEVHLKNN------QISDVSPLANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           +  +  L  L    L+   I++L   + +L  +  L LSG  ++ +  ++  L ++ +L 
Sbjct: 56  IEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLD 113

Query: 175 LEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL---CNFVVGKDSG 231
           L    ++  +   +  L  L  L       +      +  LT LQ L      V      
Sbjct: 114 LTST-QITDVTP-LAGLSNLQVLYLDLN-QITNIS-PLAGLTNLQYLSIGNAQVS---DL 166

Query: 232 SGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTD 284
           + L+ L  L  L+   + +K+ ++          L    NL E+ L+  + +D
Sbjct: 167 TPLANLSKLTTLK--ADDNKISDISP--------LASLPNLIEVHLKNNQISD 209

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 672 SCPSLTCIFSKNELPATLESLEVGNLP------------PSVKVLDVYGCPKLESIAERL 719
           +C  +  I S   LP + ++L++                P++  + V     L+ +    
Sbjct: 19  TCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 720 -DNNTSLETINISNCENLKILSSG-LHNLCQLQQIGIGGCGNLESFPEGGL--PCAKLRR 775
             N + +  I I N  NL  +    L  L  L+ +GI   G L+ FP+            
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFI 134

Query: 776 LEIYDCKRLEALPKG-LHNLTS-LQQLTIIGGELPSLEEDGL-PTNLHSLRIEGNMGI 830
           LEI D   + ++P      L +    L +      S++      T L ++ +  N  +
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL 192

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 22/209 (10%)

Query: 607 SSLEILKIWDCHSLTYIAE---VQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSS 663
             LE ++I     L  I       LP  L  + I++ N +  +        +        
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYI--NPEAFQNLPNLQYLL 110

Query: 664 LLENLAISSCPSLTCIFSKNELP------ATLESLEVG---NLPPSVKVLDVYGCPKLES 714
           +     I   P +  I S  ++         + ++E      L     +L +     ++ 
Sbjct: 111 ISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQE 168

Query: 715 IAERLDNNTSLETINISNCENLKILSSG-LHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773
           I     N T L+ +N+S+  NL+ L +   H       + I     + S P  GL    L
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGL--ENL 225

Query: 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTI 802
           ++L       L+ LP  L  L +L + ++
Sbjct: 226 KKLRARSTYNLKKLPT-LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 41/219 (18%), Positives = 66/219 (30%), Gaps = 26/219 (11%)

Query: 723 TSLETINISNCENLKILSSG-LHNLCQLQQIGIGGCGNLESFPEG---GLPCAKLRRLEI 778
            +   +       L+++  G       L++I I     LE         LP  KL  + I
Sbjct: 30  RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRI 86

Query: 779 YDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEEDGLP--TNLHSLRIEGNMGIWKSMI 835
                L  +      NL +LQ L I    +  L +           L I+ N+ I    I
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI--HTI 144

Query: 836 ERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESL 895
           ER            L +      +                     L  L+++   NLE L
Sbjct: 145 ERNSFVGLSFESVILWLNKN--GIQEIHNS--------AFNGT-QLDELNLSDNNNLEEL 193

Query: 896 SSSI-VDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRI 933
            + +         L +     +   P  GL  +L +LR 
Sbjct: 194 PNDVFHGASGPVILDISRTR-IHSLPSYGL-ENLKKLRA 230

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 7/116 (6%)

Query: 110 LAPSILPKLLKLQRLRVFSLRGYHISELPDSV--GDLRYLRYLNLSGTNIRTLPESVNKL 167
           L        L+   L +      +I  +  +   G       L L+   I+ +  S    
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176

Query: 168 YNLHSLLLEDCDRLKKLCADM-GNLIKLHHLNNSNTDSLEETPLGI-GKLTCLQTL 221
             L  L L D + L++L  D+         L+ S T  +   P      L  L+  
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRAR 231

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 33/257 (12%), Positives = 66/257 (25%), Gaps = 63/257 (24%)

Query: 543 YCEGLVKLPQSSLSL-SSLKEIEI---YKCSSLVSFPEVALPSKLKKIEI---RECDALK 595
           Y  G   +  ++     +   +         +L     V L  K+K IE    + CD LK
Sbjct: 71  YPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEK---VILSEKIKNIEDAAFKGCDNLK 127

Query: 596 S--LPEPWMCDTSSSLEILKIWDCHSLTYI-------AEVQLPLSLKRLDIQRCNKIRTL 646
              + +       ++  +L      S+T I          +     +         + T 
Sbjct: 128 ICQIRK------KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181

Query: 647 TVEEGIQSSSSR--RYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVL 704
                +        +       ++   +            +   + +L   ++  +    
Sbjct: 182 IQVGAMGKLEDEIMKAGLQ-PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT---- 236

Query: 705 DVYGCPKLESIAERL-DNNTSLETINI------------SNCENLK---ILSSGLHNLCQ 748
                    +I +        L  I +            SNC  L     L +       
Sbjct: 237 ------NATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPAS------ 284

Query: 749 LQQIGIG---GCGNLES 762
           +  I  G   GC NL  
Sbjct: 285 VTAIEFGAFMGCDNLRY 301

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 41/267 (15%), Positives = 73/267 (27%), Gaps = 17/267 (6%)

Query: 673 CPSLTCIFSKNELPATLESL-EVGNLPPSVKVLDVYGCPKLESIAER-LDNNTSLETINI 730
             S  C             L +V  LP  V  +D+     +  + E        L+ + +
Sbjct: 4   GTS-ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKV 61

Query: 731 SNCENLKILSSGL-HNLCQLQQIGIGGCGNLESFPEGGL-PCAKLRRLEIYDCK-RLEAL 787
                  ++ +     L  L  + +           G     A L  L +  C      L
Sbjct: 62  EQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 788 PKGL-HNLTSLQQLTIIGGELPSLEEDGL---PTNLHSLRIEGNMGIWKSMIERGRGFHR 843
                  LTSL+ L +    +  ++           H L +  N    KS I        
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKS-ICEED-LLN 176

Query: 844 FSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQ 903
           F    + L+R     +                    S+T+L ++     ES++    D  
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 904 NLTKLTLYDCPKLKYFPEKGLPSSLLQ 930
             TK+         Y        +  +
Sbjct: 237 AGTKI-QSLILSNSYNMGSSFGHTNFK 262

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           L  L +L  +    L    +  LP ++  LR L  L  S   +  +   V  L  L  LL
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELL 514

Query: 175 L-----EDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPL 210
           L     +    ++ L     +  +L  LN      L+   L
Sbjct: 515 LCNNRLQQSAAIQPL----VSCPRLVLLN------LQGNSL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 113 SILPKLLKLQRLRVFSLRGYHIS-ELPDSVGDLRYLRYLNLSGTNIR-TLPESVNKLYNL 170
           +I   L  L +LR   L    +  E+P  +  ++ L  L L   ++   +P  ++   NL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 171 HSLLLEDCDRLK-KLCADMGNLIKLHHL---NNSNTDSLEETPLGIGKLTCLQTL 221
           + + L +  RL  ++   +G L  L  L   NNS + ++   P  +G    L  L
Sbjct: 493 NWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNI---PAELGDCRSLIWL 543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 40/243 (16%)

Query: 696 NLPPSVKVLDVYGCPKLESI-AERLDNNTSLETINISNCENLKILSSGL-HNLCQLQQIG 753
           NLP S K LD+     L  + +    +   L+ +++S C  ++ +  G   +L  L  + 
Sbjct: 25  NLPFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLI 82

Query: 754 IGGCGN-LESFPEG---GLPCAKLRRLEIYDCKRLEALPKGL-HNLTSLQQLTIIGGELP 808
           + G  N ++S   G   GL    L++L   +   L +L      +L +L++L +    + 
Sbjct: 83  LTG--NPIQSLALGAFSGLS--SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 809 SLEEDGL---PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG--CDDDMVSFP 863
           S +        TNL  L +  N  I    I           +  L +      + M    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK-IQ--SIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 864 PEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVD-LQNLTKLTLY------DCPKL 916
           P                L  L++     L+S+   I D L +L K+ L+       CP++
Sbjct: 194 PGAFKE---------IRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243

Query: 917 KYF 919
            Y 
Sbjct: 244 DYL 246

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 116 PKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLL 175
                        L     + +  +   +  L Y+ L+  N+  L   +   +N+  L +
Sbjct: 20  STFKAYLNG---LLGQSSTANI--TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTI 73

Query: 176 EDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLS 235
            +          +  L  L  L     D   +    +  LT L  L +        S L+
Sbjct: 74  NNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL-DISHSAHDDSILT 130

Query: 236 ELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTD 284
           ++  L  +  ++++S    + D+       L     LK L +++    D
Sbjct: 131 KINTLPKVN-SIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGVHD 173

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 10/144 (6%)

Query: 670 ISSCPSLTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETI 728
           I    ++  +  +          +    L  +++ L + G          L   TSL  +
Sbjct: 62  IEYAHNIKDLTINNIHA-TNYNPIS--GLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 729 NISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEAL 787
           +IS+  +   + + ++ L ++  I +   G +        LP  +L+ L I     +   
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP--ELKSLNIQFDG-VHDY 174

Query: 788 PKGLHNLTSLQQLTIIGGELPSLE 811
            +G+ +   L QL      +   +
Sbjct: 175 -RGIEDFPKLNQLYAFSQTIGGKK 197

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 116 PKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLL 175
            +     R R   LRGY I  + +    L     ++ S   IR L +    L  L +LL+
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71

Query: 176 EDCDRLKKLCADMG-NLIKLHHLNNSN--TDSLEE-TPLGIGKLTCLQTLC 222
            + +R+ ++   +   L  L  L  +N     L +  PL    L  L  LC
Sbjct: 72  NN-NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL--ASLKSLTYLC 119

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 17/113 (15%)

Query: 120 KLQRLRVFSLRGYHIS---ELPDSVGDLRYLRYLNLSGTNIRT--LPESVNKLYNLHSLL 174
           +  R+    L G ++     +P S+ +L YL +L + G N     +P ++ KL  LH L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 175 LEDCDRLKKLC----ADMGNLIKLHHLN-NSNTDSLE-ETPLGIGKLTCLQTL 221
           +        +       +  +  L  L+ + N  +L    P  I  L  L  +
Sbjct: 108 ITHT----NVSGAIPDFLSQIKTLVTLDFSYN--ALSGTLPPSISSLPNLVGI 154

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 31/187 (16%)

Query: 685 LPATLESLEVGN-----LP-------PSVKVLDVYGCPKLESIAER-LDNNTSLETINIS 731
           +PA  + + +       +P        ++ +L ++    L  I          LE +++S
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLS 88

Query: 732 NCENLKILSSG-LHNLCQLQQIGIGGCGNLESFPEG---GLPCAKLRRLEIYDCKRLEAL 787
           +   L+ +     H L +L  + +  C  L+    G   GL    L+ L + D   L+AL
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLA--ALQYLYLQDN-ALQAL 144

Query: 788 PKG-LHNLTSLQQLTIIGGELPSLEED---GLPTNLHSLRIEGNMGIWKSMIERGRGFHR 843
           P     +L +L  L + G  + S+ E    GL  +L  L +  N  +  + +     F  
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNR-V--AHVHPH-AFRD 199

Query: 844 FSSLRYL 850
              L  L
Sbjct: 200 LGRLMTL 206

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 124 LRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDCDRL 181
            +   L G  IS +P +     R L  L L    +  +  +    L  L  L L D  +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 182 KKLCADM-GNLIKLHHLN-NSNTDSLEETPLGI-GKLTCLQTL 221
           + +       L +LH L+ +     L+E   G+   L  LQ L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRC--GLQELGPGLFRGLAALQYL 134

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 19/137 (13%)

Query: 2   EKTGEDLGLEIFKELHSRSFFQQSSNDA-SRFVMHDLINDLAHWAAGEIYFTMEYTSEVN 60
           E+  +D   +  K L  R             F +  +I+                 +  N
Sbjct: 423 EEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ-------TIAN 475

Query: 61  KQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSIL----- 115
                 + L  +              + +   H + F     ++  P     +++     
Sbjct: 476 GISILEQRLLEIGN------NNVSVPERHIPSHFQKFRRSSASEMYPKTTEETVIRPEDF 529

Query: 116 PKLLKLQRLRVFSLRGY 132
           PK ++L +    SL+ +
Sbjct: 530 PKFMQLHQKFYDSLKNF 546

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 51/296 (17%), Positives = 105/296 (35%), Gaps = 55/296 (18%)

Query: 496 LLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYC----EGLVKLP 551
            L+   +L  L +R       L         Q L   SC+++ L L+ C     G   L 
Sbjct: 51  ALRVNPALAELNLRSN----ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106

Query: 552 QSSLSLSSLKEIEIYKC----SSLVSFPEVALP--SKLKKIEIREC----DALKSLPEPW 601
            +  +L +L+E+ +       + L    E  L    +L+K+++  C     + + L    
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-- 164

Query: 602 MCDTSSSLEILKIWDCH----SLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSS 655
           +       + L + +       +  + +     P  L+ L ++ C     +T  +  +  
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG----VT-SDNCRDL 219

Query: 656 SSRRYTSSLLENLAISSCPSLTCIF-SKNEL-PATLESLEVGNLPP--SVKVLDVYGCPK 711
                         ++S  SL  +    N+L    +  L  G L P   ++ L ++ C  
Sbjct: 220 CG-----------IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

Query: 712 ----LESIAERLDNNTSLETINISNC----ENLKILSSGL-HNLCQLQQIGIGGCG 758
                  +   L    SL+ ++++      E  ++L   L    CQL+ + +  C 
Sbjct: 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 56/274 (20%), Positives = 91/274 (33%), Gaps = 73/274 (26%)

Query: 529 LCELSCRLEYLRLRYC----EGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLK 584
           L +  C+LE L+L  C    +    L     S +SL+E+ +                KL 
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-------------KLG 240

Query: 585 KIEIRE-CDALKSLPEPWMCDTSSSLEILKIWDCH----SLTYIAEVQLPL--SLKRLDI 637
            + + E C  L           SS L  L IW+C         +  V L    SLK L +
Sbjct: 241 DVGMAELCPGLL--------HPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSL 291

Query: 638 QRCNKIRTLTVEEGIQS-SSSRRYTSSLLENL-----------------AISSCPSLTCI 679
              N++     +EG +    +       LE+L                  ++    L  +
Sbjct: 292 A-GNELG----DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 680 -FSKNEL-----PATLESLEVGNLPPSVKVLDVYGCP----KLESIAERLDNNTSLETIN 729
             S N L         + L        ++VL +  C        S+A  L  N SL  ++
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPG--SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 730 ISNC----ENLKILSSGL-HNLCQLQQIGIGGCG 758
           +SN       +  L   +    C L+Q+ +    
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 60/336 (17%), Positives = 111/336 (33%), Gaps = 77/336 (22%)

Query: 531 ELSCRLEYLRLRYCEGLVKLPQSSLS-LSSLKEIEIYKCSSLVSFPEVALP--SKLKKIE 587
           E+S     L L+  + + +L +     L  L  + +     +    E A     KL+K+ 
Sbjct: 51  EISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLY 108

Query: 588 IRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAE---VQLPLSLKRLDIQRCNKIR 644
           I +   L  +P     +  SSL  L+I D   +  + +     L  ++  +++   N + 
Sbjct: 109 ISKNH-LVEIPP----NLPSSLVELRIHDNR-IRKVPKGVFSGLR-NMNCIEMGG-NPLE 160

Query: 645 TLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVL 704
               E G             L  L IS    LT I    +LP TL  L            
Sbjct: 161 NSGFEPGAFDGLK-------LNYLRISEA-KLTGI--PKDLPETLNEL------------ 198

Query: 705 DVYGCPKLESIAERLDNN--TSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLES 762
                         LD+N   ++E  ++     L  L   L +  Q++ I  G    L +
Sbjct: 199 -------------HLDHNKIQAIELEDLLRYSKLYRLG--LGH-NQIRMIENGSLSFLPT 242

Query: 763 FPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQL--------TIIGGELPSLEEDG 814
                     LR L + +  +L  +P GL +L  LQ +         +   +   +    
Sbjct: 243 ----------LRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 815 LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL 850
                + + +  N  +    ++    F   +    +
Sbjct: 292 KRAYYNGISLFNNP-VPYWEVQPA-TFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 49/245 (20%), Positives = 84/245 (34%), Gaps = 50/245 (20%)

Query: 696 NLPPSVKVLDVYGCPKLESI-AERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGI 754
            + P   +LD+     +  +  +       L  + + N +  KI       L +LQ++ I
Sbjct: 51  EISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 755 GGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPK----GLHNLT--------------- 795
               +L   P        L  L I+D + +  +PK    GL N+                
Sbjct: 110 SKN-HLVEIPPNLPS--SLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 796 -------SLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR 848
                   L  L I   +L  +    LP  L+ L ++ N  I    IE      R+S L 
Sbjct: 166 PGAFDGLKLNYLRISEAKLTGIP-KDLPETLNELHLDHN-KI--QAIELED-LLRYSKLY 220

Query: 849 YLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPN-LESLSSSIVDLQNLTK 907
            L +      +            G+   LP +L  L +    N L  + + + DL+ L  
Sbjct: 221 RLGLGHNQ--IRMIEN-------GSLSFLP-TLRELHLDN--NKLSRVPAGLPDLKLLQV 268

Query: 908 LTLYD 912
           + L+ 
Sbjct: 269 VYLHT 273

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 704 LDVYGCPKLESIAERLDNNTSLETINISNCEN-----LKILSSGLHNLCQLQQIGIGGCG 758
           +D      +    + ++    +E I +  C       L+ LS   +    + ++ I  CG
Sbjct: 66  IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125

Query: 759 NLESFPEGGL----PCAKLRRLEIYDCKRLEALPKG-LHNLTSLQQLTI 802
           N+    + G+        L+ L + D   ++   K      TSL  L +
Sbjct: 126 NVT---DKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV-NKLYNLH 171
           + L     L  L    L    +  LP     L  L  L++S   + +LP      L  L 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 172 SLLLEDCDRLKKLCADM-GNLIKLHHLN-NSNTDSLEETPLGI-GKLTCLQTL 221
            L L+  + LK L   +     KL  L+  +N  +L E P G+   L  L TL
Sbjct: 128 ELYLKG-NELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTL 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 117 KLLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLL 174
           +L  L  L    L   H++ +       +  LRYL+LS  ++ TL E + + L  L  LL
Sbjct: 62  RLTNLHSL---LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118

Query: 175 LEDCDRLKKLCADM-GNLIKLHHLN-NSNTDSLEETPLGI----GKLTCLQTL 221
           L +   +  +  +   ++ +L  L  + N   +   P+ +     KL  L  L
Sbjct: 119 LYNN-HIVVVDRNAFEDMAQLQKLYLSQN--QISRFPVELIKDGNKLPKLMLL 168

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 31/179 (17%), Positives = 67/179 (37%), Gaps = 32/179 (17%)

Query: 670 ISSCPSLTCI-FSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETI 728
                +       K  +   L S +   L   V+  +      ++S+   +   T+L+ +
Sbjct: 15  DPGLANAVKQNLGKQSV-TDLVSQK--ELS-GVQNFNGDNS-NIQSL-AGMQFFTNLKEL 68

Query: 729 NISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL-----EIYDCKR 783
           ++S+ +   +  S L +L +L+++ +     L++    G+P A L RL     E+ D   
Sbjct: 69  HLSHNQISDL--SPLKDLTKLEELSVNRN-RLKNLN--GIPSACLSRLFLDNNELRDTDS 123

Query: 784 LEALPK---------------GLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGN 827
           L  L                  L  L+ L+ L + G E+ +         ++ + + G 
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	976
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.98
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.63
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.52
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.49
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.46
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.4
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.37
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.36
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.35
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.33
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.33
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.3
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.27
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.19
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.14
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.02
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.0
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.95
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.64
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.61
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.77
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.45
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	92.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.77
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.06
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	85.16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	84.87

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.3e-53  Score=511.88  Aligned_cols=247  Identities=13%  Similarity=0.054  Sum_probs=148.9

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|++.+.+|..++.+++|++|++++|...+.+|..+..+++|++|++++|+..+.+|..+..+..+..+++
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~  569 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF  569 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred             CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence            44555555555555555555555555555555555444455555555555555555555444445544433333332222


Q ss_pred             cCCcCc----------------------ccCCCcCCCCCccceEEEeCCCCCCcc--cCCCCCccceeeecCCCCccchh
Q 048829          779 YDCKRL----------------------EALPKGLHNLTSLQQLTIIGGELPSLE--EDGLPTNLHSLRIEGNMGIWKSM  834 (976)
Q Consensus       779 ~~c~~l----------------------~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~  834 (976)
                      ..+...                      +..+..+..++.++.+++..+.+....  ..+.+++|+.|++++|.+...++
T Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip  649 (768)
T 3rgz_A          570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP  649 (768)
T ss_dssp             TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence            211000                      001111122222222222222222111  12345789999999999988877


Q ss_pred             hhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829          835 IERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       835 ~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~  914 (976)
                          ..+.++++|+.|++++ |...+.+|...         ..+++|+.|++++|+.-+.+|..+..+++|++|++++|+
T Consensus       650 ----~~l~~l~~L~~L~Ls~-N~l~g~ip~~l---------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          650 ----KEIGSMPYLFILNLGH-NDISGSIPDEV---------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             ----GGGGGCTTCCEEECCS-SCCCSCCCGGG---------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             ----HHHhccccCCEEeCcC-CccCCCCChHH---------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence                5689999999999999 56777899887         589999999999966667999999999999999999988


Q ss_pred             CccccCCCCCcccccceeecCCcc-----hHHHHhccCCccccccccccEE
Q 048829          915 KLKYFPEKGLPSSLLQLRIYRCPL-----IEEKCRKDGGQYWDLLTHIPYA  960 (976)
Q Consensus       915 ~l~~i~~~~~~~~L~~L~i~~c~~-----l~~~~~~~~~~~~~~i~~~~~~  960 (976)
                      ..+.||..+...++....+.|||.     +. .|...++++|++|+|+|.+
T Consensus       716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             EEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-------------
T ss_pred             ccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCCCCCCcccc
Confidence            888999887777888888888763     34 7999999999999999985

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-48  Score=474.78  Aligned_cols=629  Identities=15%  Similarity=0.069  Sum_probs=372.0

Q ss_pred             cccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCcc-ccch--hhhccCCccEEecccccchhccchhh-h
Q 048829          114 ILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIR-TLPE--SVNKLYNLHSLLLEDCDRLKKLCADM-G  189 (976)
Q Consensus       114 ~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~-~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i-~  189 (976)
                      +++.+.++++|++++++.+.+..+|..|+++++|++|+|++|.+. .+|.  .++++++|++|++++|.....+|..+ +
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred             cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence            566666888888888888887777788888888888888888876 4666  78888888888888865445556554 7


Q ss_pred             ccccCceeecCCCCCcccc-ccc---cCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhc
Q 048829          190 NLIKLHHLNNSNTDSLEET-PLG---IGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEAR  265 (976)
Q Consensus       190 ~L~~L~~L~l~~~~~~~~l-p~~---i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~  265 (976)
                      ++++|++|++++|. +... |..   ++++++|++|++......                     .              
T Consensus       149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---------------------~--------------  192 (768)
T 3rgz_A          149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKIS---------------------G--------------  192 (768)
T ss_dssp             CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEE---------------------S--------------
T ss_pred             cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCccc---------------------c--------------
Confidence            88888888888887 4433 333   566777776643211100                     0              


Q ss_pred             cCCCCCCceEEEEEccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCC
Q 048829          266 LDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTA  345 (976)
Q Consensus       266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~  345 (976)
                                                      ...+..+++|+.|+++++.....+..+..  +++|++|++++|...+.
T Consensus       193 --------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~--l~~L~~L~Ls~n~l~~~  238 (768)
T 3rgz_A          193 --------------------------------DVDVSRCVNLEFLDVSSNNFSTGIPFLGD--CSALQHLDISGNKLSGD  238 (768)
T ss_dssp             --------------------------------CCBCTTCTTCCEEECCSSCCCSCCCBCTT--CCSCCEEECCSSCCCSC
T ss_pred             --------------------------------cCCcccCCcCCEEECcCCcCCCCCccccc--CCCCCEEECcCCcCCCc
Confidence                                            00112344455555555544332222333  55666666666655444


Q ss_pred             CC-CCCCCCCCceEEEeCCCCceeeCccccCCCCCCCCCCcceeecccccccccccccCCCCCccC-CcccceeecccCc
Q 048829          346 LP-SVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEG-FPKLRELHILECP  423 (976)
Q Consensus       346 l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~L~~L~l~~c~  423 (976)
                      +| .++.+++|++|++++|.....+..        ..+++|++|++.++.-.     +..+..+.. +++|++|++++| 
T Consensus       239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~--------~~l~~L~~L~L~~n~l~-----~~ip~~~~~~~~~L~~L~Ls~n-  304 (768)
T 3rgz_A          239 FSRAISTCTELKLLNISSNQFVGPIPP--------LPLKSLQYLSLAENKFT-----GEIPDFLSGACDTLTGLDLSGN-  304 (768)
T ss_dssp             HHHHTTTCSSCCEEECCSSCCEESCCC--------CCCTTCCEEECCSSEEE-----ESCCCCSCTTCTTCSEEECCSS-
T ss_pred             ccHHHhcCCCCCEEECCCCcccCccCc--------cccCCCCEEECcCCccC-----CccCHHHHhhcCcCCEEECcCC-
Confidence            44 455566666666665543222211        12556666666655411     111111222 367777777777 


Q ss_pred             ccccCCCC---CCCCcceEEEeccccc---cc-cCCCCCcccEEEEccccceeeecccCCCCCCceEEeccCCCCCcccc
Q 048829          424 KLRGTFPE---HLPVLEMLVIEGCEEL---LV-SVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGL  496 (976)
Q Consensus       424 ~L~~~lp~---~l~~L~~L~l~~~~~l---~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  496 (976)
                      .+++.+|.   .+++|++|++++|...   .. .+..+++|++|++++|.....                      ....
T Consensus       305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~----------------------~p~~  362 (768)
T 3rgz_A          305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE----------------------LPES  362 (768)
T ss_dssp             EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC----------------------CCTT
T ss_pred             cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc----------------------ccHH
Confidence            55545553   3445555555554322   11 134455555555555432210                      1112


Q ss_pred             cccCC-CCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCC
Q 048829          497 LQDIC-SLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFP  575 (976)
Q Consensus       497 ~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~  575 (976)
                      +..++ +|+.|++++|.--..++...     ..  ..+++|+.|++++|...+.+|..+..+++|++|++++|..-..+|
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~-----~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  435 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNL-----CQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP  435 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTT-----TC--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhh-----hh--cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence            23333 66666666653222111110     00  002456666666666655666666666666666666642222333


Q ss_pred             C-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccc
Q 048829          576 E-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQ  653 (976)
Q Consensus       576 ~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~  653 (976)
                      . ...+++|++|++++|...+.+|..+.  .+++|++|++++|.....+|.. ..+++|+.|++++|...+.+  |.++.
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~  511 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI--PKWIG  511 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGG
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC--ChHHh
Confidence            2 33356666666666664434444433  5566666666665544444433 34455666666655433333  32222


Q ss_pred             cccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecC
Q 048829          654 SSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNC  733 (976)
Q Consensus       654 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c  733 (976)
                      .                                          + ++|++|++++|++.+.+|..+..+++|++|++++|
T Consensus       512 ~------------------------------------------l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          512 R------------------------------------------L-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             G------------------------------------------C-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             c------------------------------------------C-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            1                                          1 78999999999999999999999999999999999


Q ss_pred             CCcccccccccCCCCCcEEEccCCCCCC----------------------ccCCCCCCCCCccEEEecCCcCcccCCCcC
Q 048829          734 ENLKILSSGLHNLCQLQQIGIGGCGNLE----------------------SFPEGGLPCAKLRRLEIYDCKRLEALPKGL  791 (976)
Q Consensus       734 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~----------------------~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l  791 (976)
                      ...+.+|..+.....+..+.+..+....                      ..+.....++.++.+++..+...+.+|..+
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            8888999888776666555444321110                      011111223344555555566556677777


Q ss_pred             CCCCccceEEEeCCCCCC-ccc-CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCccc
Q 048829          792 HNLTSLQQLTIIGGELPS-LEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDR  869 (976)
Q Consensus       792 ~~l~~L~~L~l~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~  869 (976)
                      ..+++|+.|++++|.+.. +|. .+.+++|+.|++++|.+...++    ..+.++++|+.|++++ |...+.+|...   
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip----~~l~~L~~L~~LdLs~-N~l~g~ip~~l---  700 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP----DEVGDLRGLNILDLSS-NKLDGRIPQAM---  700 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC----GGGGGCTTCCEEECCS-SCCEECCCGGG---
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC----hHHhCCCCCCEEECCC-CcccCcCChHH---
Confidence            777888888888777763 332 2446778888888888777666    4578888888888888 56666777766   


Q ss_pred             ccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCcc
Q 048829          870 RLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLK  917 (976)
Q Consensus       870 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~  917 (976)
                            ..+++|+.|++++|+..+.||. ...+..+....+.+|+.+-
T Consensus       701 ------~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lc  741 (768)
T 3rgz_A          701 ------SALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLC  741 (768)
T ss_dssp             ------GGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEE
T ss_pred             ------hCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhc
Confidence                  4788888888888666677774 3445566666677776554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.6e-41  Score=406.04  Aligned_cols=375  Identities=16%  Similarity=0.124  Sum_probs=231.7

Q ss_pred             CCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--c
Q 048829          500 ICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--V  577 (976)
Q Consensus       500 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~  577 (976)
                      .++|+.|+++++. +.......    +..+  ..++|+.|++++|......+..+..+++|++|++++| .++.++.  .
T Consensus       221 ~~~L~~L~L~~n~-l~~~~~~~----~~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~  292 (680)
T 1ziw_A          221 NTSIRNLSLSNSQ-LSTTSNTT----FLGL--KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSL  292 (680)
T ss_dssp             TSCCCEEECTTSC-CCEECTTT----TGGG--GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTT
T ss_pred             hccccEEEccCCc-ccccChhH----hhcc--CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-ccCccChhhh
Confidence            3567777777753 22222211    1111  0034777777777666555666677777777777773 4444332  3


Q ss_pred             CCCCCCcEEEEccCCCCC-----CCC---CccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEeeccCcC-ccccc
Q 048829          578 ALPSKLKKIEIRECDALK-----SLP---EPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNK-IRTLT  647 (976)
Q Consensus       578 ~~~~~L~~L~l~~~~~l~-----~l~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~-l~~~~  647 (976)
                      ..+++|++|++++|..-.     .+|   ...+ ..+++|++|++++|......+.. ..+++|++|++++|.. +..+ 
T Consensus       293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l-  370 (680)
T 1ziw_A          293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-  370 (680)
T ss_dssp             TTCTTCCEEECTTCBCCC------CCEECTTTT-TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE-
T ss_pred             cCCCCccEEeccchhhhcccccccccccChhhc-ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc-
Confidence            346677777776654211     111   1111 35566666666665332222211 3344566666655531 1111 


Q ss_pred             cccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCce
Q 048829          648 VEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLET  727 (976)
Q Consensus       648 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  727 (976)
                                                       +...+...        -.++|+.|++++|.+.+..|..+..+++|++
T Consensus       371 ---------------------------------~~~~f~~~--------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          371 ---------------------------------TNETFVSL--------AHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             ---------------------------------CTTTTGGG--------TTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ---------------------------------chhhhccc--------ccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence                                             11111000        0146788888888877777777888888888


Q ss_pred             EEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCc--ccCCCcCCCCCccceEEEeC
Q 048829          728 INISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRL--EALPKGLHNLTSLQQLTIIG  804 (976)
Q Consensus       728 L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~l~~l~~L~~L~l~~  804 (976)
                      |++++|...+.+| ..+.++++|++|++++|......+..+..+++|++|++++|...  +.+|..+..+++|++|++++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~  489 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN  489 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence            8888876655554 56777888888888888544444455666788888888887643  45677778888888888888


Q ss_pred             CCCCCcccC--CCCCccceeeecCCCCccchhhh----cCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCc
Q 048829          805 GELPSLEED--GLPTNLHSLRIEGNMGIWKSMIE----RGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLP  878 (976)
Q Consensus       805 ~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l  878 (976)
                      |.+..++..  ..+++|++|++++|.+.......    ....+.++++|++|++++  +.+..+|.+.        |..+
T Consensus       490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~--------~~~l  559 (680)
T 1ziw_A          490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEV--------FKDL  559 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTT--------TTTC
T ss_pred             CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHH--------cccc
Confidence            888877654  34677888888888776542211    002367788888888887  3555676653        3678


Q ss_pred             cccceeeccccCCCcccccc-ccCCCCCCeEeecCCCCccccCCCCC---cccccceeecCCc
Q 048829          879 ASLTSLSIAFFPNLESLSSS-IVDLQNLTKLTLYDCPKLKYFPEKGL---PSSLLQLRIYRCP  937 (976)
Q Consensus       879 ~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~i~~~~~---~~~L~~L~i~~c~  937 (976)
                      ++|+.|++++ +.++.+|.. +..+++|+.|++++| +++.+++..+   .++|++|++++||
T Consensus       560 ~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          560 FELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             TTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             cCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence            8888888887 677788764 567888888888884 6777766433   3678888888765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-41  Score=408.04  Aligned_cols=564  Identities=17%  Similarity=0.145  Sum_probs=344.7

Q ss_pred             CcccEEEccCCcccccc-ccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-hhccccCceee
Q 048829          122 QRLRVFSLRGYHISELP-DSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLN  198 (976)
Q Consensus       122 ~~Lr~L~Ls~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  198 (976)
                      +++++|+|++|.++.+| ..|+++++|++|+|++|.+..+ |..|+++++|++|++++ +.+..+|.. |+++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC-CccCccChhhhccCCCCCEEE
Confidence            56777777777777764 4577777777777777777766 56677777777777777 366677653 77777777777


Q ss_pred             cCCCCCcccccc-ccCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhccCCCCCCceEEE
Q 048829          199 NSNTDSLEETPL-GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLL  277 (976)
Q Consensus       199 l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l  277 (976)
                      +++|. +..+|. .|+++++|++|++......                        .                       
T Consensus       104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------~-----------------------  135 (680)
T 1ziw_A          104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS------------------------S-----------------------  135 (680)
T ss_dssp             CCSSC-CCCCCSCTTTTCTTCCEEECCSSCCS------------------------C-----------------------
T ss_pred             CCCCc-cCccChhHccccCCCCEEECCCCccc------------------------c-----------------------
Confidence            77776 666653 3667777666643211100                        0                       


Q ss_pred             EEccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCc-cCCCCCCCccEEEEecCCCCCCCC-CCCCCCCC
Q 048829          278 RWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSL  355 (976)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L  355 (976)
                                        .....+..+++|+.|+++++....++.. +.....++|++|++++|...+..+ .++.+++|
T Consensus       136 ------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  197 (680)
T 1ziw_A          136 ------------------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL  197 (680)
T ss_dssp             ------------------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred             ------------------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence                              0011223344455555555544433321 111114566666666665544433 34555666


Q ss_pred             ceEEEeCCCCceeeCccccCCCCCCCCCCcceeecccccccccccccCCCCCccCCcccceeecccCcccccCCCCCCCC
Q 048829          356 KHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPV  435 (976)
Q Consensus       356 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~  435 (976)
                      +.|++.++.......                          .....      ....++|+.|++++| .+.+..|..+..
T Consensus       198 ~~L~l~~~~l~~~~~--------------------------~~~~~------~l~~~~L~~L~L~~n-~l~~~~~~~~~~  244 (680)
T 1ziw_A          198 FGLFLNNVQLGPSLT--------------------------EKLCL------ELANTSIRNLSLSNS-QLSTTSNTTFLG  244 (680)
T ss_dssp             CEEECTTCCCHHHHH--------------------------HHHHH------HHTTSCCCEEECTTS-CCCEECTTTTGG
T ss_pred             hhhhccccccChhhH--------------------------HHHHH------HhhhccccEEEccCC-cccccChhHhhc
Confidence            666655432110000                          00000      012356777777776 454333332211


Q ss_pred             cceEEEeccccccccCCCCCcccEEEEccccceeeecccCCCCCCceEEeccCCCCCcccccccCCCCCeEEEcCCCCcc
Q 048829          436 LEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQ  515 (976)
Q Consensus       436 L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  515 (976)
                      ++                .++|++|+++++......                      ...+..+               
T Consensus       245 l~----------------~~~L~~L~Ls~n~l~~~~----------------------~~~~~~l---------------  271 (680)
T 1ziw_A          245 LK----------------WTNLTMLDLSYNNLNVVG----------------------NDSFAWL---------------  271 (680)
T ss_dssp             GG----------------GSCCCEEECTTSCCCEEC----------------------TTTTTTC---------------
T ss_pred             cC----------------cCCCCEEECCCCCcCccC----------------------cccccCc---------------
Confidence            00                011222222222111100                      0011122               


Q ss_pred             cchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCC-----CCC-----CcCCCCCCcE
Q 048829          516 SLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLV-----SFP-----EVALPSKLKK  585 (976)
Q Consensus       516 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~-----~~~~~~~L~~  585 (976)
                                        ++|+.|++++|......|..+..+++|+.|+++++..-.     .+|     ....+++|++
T Consensus       272 ------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          272 ------------------PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             ------------------TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             ------------------ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence                              455555555555555555566666777777776532111     222     1334677888


Q ss_pred             EEEccCCCCCCCCCccccCCCCcccEEEEecCCC-Cccccccc----CCCCCcEEeeccCcCcccccccccccccccccc
Q 048829          586 IEIRECDALKSLPEPWMCDTSSSLEILKIWDCHS-LTYIAEVQ----LPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRY  660 (976)
Q Consensus       586 L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  660 (976)
                      |++++|. +..++...+ ..+++|++|++++|.. +..++...    ..++|+.|++++|...+..  +..+..+     
T Consensus       334 L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l-----  404 (680)
T 1ziw_A          334 LNMEDND-IPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SDAFSWL-----  404 (680)
T ss_dssp             EECCSCC-BCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC--TTTTTTC-----
T ss_pred             EECCCCc-cCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC--hhhhhCC-----
Confidence            8888777 555555444 5778888888887642 23333221    1246778888777532221  2111111     


Q ss_pred             CCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh-hhhcCCCCCceEEeecCCCcccc
Q 048829          661 TSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA-ERLDNNTSLETINISNCENLKIL  739 (976)
Q Consensus       661 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l  739 (976)
                                                            ++|++|++++|.+.+.++ ..+.++++|++|++++|......
T Consensus       405 --------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  446 (680)
T 1ziw_A          405 --------------------------------------GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT  446 (680)
T ss_dssp             --------------------------------------TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred             --------------------------------------CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence                                                  678888888888877665 67888889999999987655555


Q ss_pred             cccccCCCCCcEEEccCCCCC--CccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC----
Q 048829          740 SSGLHNLCQLQQIGIGGCGNL--ESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED----  813 (976)
Q Consensus       740 p~~~~~l~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~----  813 (976)
                      +..+..+++|++|++++|...  +.+|..+..+++|++|++++|......+..+..+++|++|++++|.+..++..    
T Consensus       447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  526 (680)
T 1ziw_A          447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG  526 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred             hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence            777888899999999888542  56677778888999999999885544445678889999999999888876432    


Q ss_pred             ------CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeecc
Q 048829          814 ------GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIA  887 (976)
Q Consensus       814 ------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  887 (976)
                            ..+++|++|++++|.+.....    ..+.++++|+.|++++  +.+..+|...        |..+++|+.|+++
T Consensus       527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~--N~l~~l~~~~--------~~~l~~L~~L~L~  592 (680)
T 1ziw_A          527 GPIYFLKGLSHLHILNLESNGFDEIPV----EVFKDLFELKIIDLGL--NNLNTLPASV--------FNNQVSLKSLNLQ  592 (680)
T ss_dssp             SCCCTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCCCCTTT--------TTTCTTCCEEECT
T ss_pred             CcchhhcCCCCCCEEECCCCCCCCCCH----HHcccccCcceeECCC--CCCCcCCHhH--------hCCCCCCCEEECC
Confidence                  345789999999998774433    4688999999999988  4666777664        4688999999999


Q ss_pred             ccCCCccccc-ccc-CCCCCCeEeecCCCCccc
Q 048829          888 FFPNLESLSS-SIV-DLQNLTKLTLYDCPKLKY  918 (976)
Q Consensus       888 ~~~~l~~l~~-~l~-~l~~L~~L~l~~c~~l~~  918 (976)
                      + +.++.++. .+. .+++|+.|++++|+..-.
T Consensus       593 ~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          593 K-NLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             T-SCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             C-CcCCccChhHhcccccccCEEEccCCCcccC
Confidence            9 57888776 454 688999999999775544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-38  Score=378.29  Aligned_cols=203  Identities=18%  Similarity=0.135  Sum_probs=114.2

Q ss_pred             cccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          535 RLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       535 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      +|+.|++++|......+..+..+++|++|++++ +.++.+|. ...+++|++|++++|. +..++...+ ..+++|++|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANK-FENLCQISA-SNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT-SCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCG-GGCTTCSEEE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccC-CccCCCChhhcccccCCEEECccCC-cCcCchhhh-hccCcCCEEE
Confidence            677778877766655555677778888888877 45666664 3446677777777776 444332222 3556666666


Q ss_pred             EecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccc
Q 048829          614 IWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES  691 (976)
Q Consensus       614 l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  691 (976)
                      +++|.....++..  ..+                                                              
T Consensus       332 l~~n~~~~~~~~~~~~~l--------------------------------------------------------------  349 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENL--------------------------------------------------------------  349 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTC--------------------------------------------------------------
T ss_pred             CCCCCcccccchhhhhcc--------------------------------------------------------------
Confidence            6655433233221  222                                                              


Q ss_pred             ccccCCCCCceEEEEcCCCcchhh--hhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CC
Q 048829          692 LEVGNLPPSVKVLDVYGCPKLESI--AERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GL  768 (976)
Q Consensus       692 ~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~  768 (976)
                             ++|++|++++|.+.+..  +..+..+++|++|++++|......|..+..+++|++|++++|......+.. +.
T Consensus       350 -------~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  422 (606)
T 3t6q_A          350 -------ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ  422 (606)
T ss_dssp             -------TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred             -------CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence                   34455555555444433  444555566666666665444444555555666666666666433333322 44


Q ss_pred             CCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCC
Q 048829          769 PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPS  809 (976)
Q Consensus       769 ~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~  809 (976)
                      .+++|++|++++|......|..+..+++|++|++++|.+..
T Consensus       423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            55666666666666444455555666666666666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.8e-38  Score=374.44  Aligned_cols=288  Identities=19%  Similarity=0.160  Sum_probs=144.9

Q ss_pred             cccEEEeeccCCc-ccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          535 RLEYLRLRYCEGL-VKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       535 ~L~~L~L~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      .++.+++..++.. ..+|. +..+++|+.|++++ +.++.+|....+++|++|++++|. ++.+|..    .+++|++|+
T Consensus       262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~-~~~~~l~~l~~~~~L~~L~l~~n~-l~~lp~~----~l~~L~~L~  334 (606)
T 3vq2_A          262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG-VSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTL----DLPFLKSLT  334 (606)
T ss_dssp             EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEES-CCCCCCCCCCTTCCCSEEEEESCC-CSSCCCC----CCSSCCEEE
T ss_pred             cHhheeccccccccccccc-cccCCCCCEEEecC-ccchhhhhccccccCCEEEccccc-CcccccC----CCCccceee
Confidence            5666666333333 33443 77788888888888 456777755557778888888877 4666632    567777777


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE  693 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  693 (976)
                      +++|..+..++ ...+++|+.|++++|                                                     
T Consensus       335 l~~n~~~~~~~-~~~l~~L~~L~ls~n-----------------------------------------------------  360 (606)
T 3vq2_A          335 LTMNKGSISFK-KVALPSLSYLDLSRN-----------------------------------------------------  360 (606)
T ss_dssp             EESCSSCEECC-CCCCTTCCEEECCSS-----------------------------------------------------
T ss_pred             ccCCcCccchh-hccCCCCCEEECcCC-----------------------------------------------------
Confidence            77765443331 123334455555444                                                     


Q ss_pred             ccCCCCCceEEEEcCCCcchh--hhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccC-CCCCCC
Q 048829          694 VGNLPPSVKVLDVYGCPKLES--IAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP-EGGLPC  770 (976)
Q Consensus       694 ~~~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~  770 (976)
                                      .+.+.  ++..+..+++|++|++++|. +..+|..+.++++|++|++++|...+..| ..+..+
T Consensus       361 ----------------~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  423 (606)
T 3vq2_A          361 ----------------ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL  423 (606)
T ss_dssp             ----------------CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred             ----------------ccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence                            33222  13334444444444444432 33334444444444444444443222222 233344


Q ss_pred             CCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCC--ccc-CCCCCccceeeecCCCCccchhhhcCCcccccCcc
Q 048829          771 AKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPS--LEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSL  847 (976)
Q Consensus       771 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  847 (976)
                      ++|++|++++|...+..|..+..+++|++|++++|.+..  ++. .+.+++|++|++++|.+....+    ..+.++++|
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L  499 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLHRL  499 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTC
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh----hhhcccccC
Confidence            444444444444434444444444444444444444443  111 1223444444444444443332    335555666


Q ss_pred             cEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCC-CCCeEeecCCCC
Q 048829          848 RYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQ-NLTKLTLYDCPK  915 (976)
Q Consensus       848 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~-~L~~L~l~~c~~  915 (976)
                      ++|++++ |...+..|..+         ..+++|+.|++++ +.++.+|..+..++ +|++|++++|+.
T Consensus       500 ~~L~Ls~-N~l~~~~~~~~---------~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          500 QLLNMSH-NNLLFLDSSHY---------NQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CEEECCS-SCCSCEEGGGT---------TTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             CEEECCC-CcCCCcCHHHc---------cCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCCc
Confidence            6666665 22222223332         3556666666666 34556666555555 366666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.5e-38  Score=374.71  Aligned_cols=510  Identities=16%  Similarity=0.095  Sum_probs=285.9

Q ss_pred             CCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccC
Q 048829           92 QHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLY  168 (976)
Q Consensus        92 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~  168 (976)
                      +++|+|.+.++.       ...+++..+ ++++||+|+|++|.++.+ |.+|+++++||+|+|++|.+..+ |.+|++++
T Consensus        32 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  104 (606)
T 3vq2_A           32 SSTKNIDLSFNP-------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT  104 (606)
T ss_dssp             TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred             CCcCEEECCCCC-------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence            677888766553       234555444 888888888888888877 66788888888888888888877 77788888


Q ss_pred             CccEEecccccchhccc-hhhhccccCceeecCCCCCcc--ccccccCCCCCCceecceEecCCC--CCCchhhhccccc
Q 048829          169 NLHSLLLEDCDRLKKLC-ADMGNLIKLHHLNNSNTDSLE--ETPLGIGKLTCLQTLCNFVVGKDS--GSGLSELKLLMHL  243 (976)
Q Consensus       169 ~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~~~~~~~~~--~~~~~~L~~L~~L  243 (976)
                      +|++|++++| .+..+| ..|+++++|++|++++|. +.  .+|..++++++|++|++.......  ...+..+++    
T Consensus       105 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~----  178 (606)
T 3vq2_A          105 SLENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE----  178 (606)
T ss_dssp             TCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH----
T ss_pred             cCCEEEccCC-ccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc----
Confidence            8888888884 566665 558888888888888887 55  467778888888877543221110  000111111    


Q ss_pred             cCceEEeecCCCCChhhhhhhccCCCCCCceEEEEEccCCCCCCChhhhhHhhhccCCCCCC-CCceeEeeccCCCCCCC
Q 048829          244 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHK-NLEQFGICGYGGTKFPT  322 (976)
Q Consensus       244 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~~~p~  322 (976)
                                                                                  ++ .+..|+++++....+|.
T Consensus       179 ------------------------------------------------------------L~~~l~~L~l~~n~l~~~~~  198 (606)
T 3vq2_A          179 ------------------------------------------------------------NPQVNLSLDMSLNPIDFIQD  198 (606)
T ss_dssp             ------------------------------------------------------------CTTCCCEEECTTCCCCEECT
T ss_pred             ------------------------------------------------------------cccccceeeccCCCcceeCc
Confidence                                                                        11 13356666666666655


Q ss_pred             ccCCCCCCCccEEEEecCCCCC-CCC-CCCCCCCCceEEEeCCCCceeeCccccCCCCCCCCCCcceeeccccccccccc
Q 048829          323 WLGDSLFSNLVTLEFEDCGMCT-ALP-SVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWI  400 (976)
Q Consensus       323 ~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  400 (976)
                      ....  ..+|+.|++++|.... ..| .++.+++|+.+++.....- .             ...+..+.-.        .
T Consensus       199 ~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~-------------~~~l~~~~~~--------~  254 (606)
T 3vq2_A          199 QAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK-D-------------ERNLEIFEPS--------I  254 (606)
T ss_dssp             TTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT-T-------------SCCCSCCCGG--------G
T ss_pred             cccc--CceeeeeeccCCccchhHHHHHhccccccccccccccccc-c-------------CCcccccChH--------H
Confidence            5544  3478888888887542 222 4566777777777532100 0             0011100000        0


Q ss_pred             ccCCCCCccCCcccceeecccCcccccCCCCCCCCcceEEEeccccccccCCCCCcccEEEEccccceeeecccCCCCCC
Q 048829          401 SHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQ  480 (976)
Q Consensus       401 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L  480 (976)
                      ...    ...+ .++.+++..+..+.+.+|.                   +..+++|+.+++.++......         
T Consensus       255 ~~~----l~~l-~l~~l~l~~~~~~~~~~~~-------------------~~~l~~L~~L~l~~~~~~~l~---------  301 (606)
T 3vq2_A          255 MEG----LCDV-TIDEFRLTYTNDFSDDIVK-------------------FHCLANVSAMSLAGVSIKYLE---------  301 (606)
T ss_dssp             GTT----GGGS-EEEEEEECCCTTCCGGGGS-------------------CGGGTTCSEEEEESCCCCCCC---------
T ss_pred             hhh----hhhc-cHhheeccccccccccccc-------------------cccCCCCCEEEecCccchhhh---------
Confidence            000    1112 4566666454455433331                   111112222222221100000         


Q ss_pred             ceEEeccCCCCCcccccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCc
Q 048829          481 NSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSL  560 (976)
Q Consensus       481 ~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L  560 (976)
                                     .+..+                                 ++|+.|++++|.. +.+| .+ .+++|
T Consensus       302 ---------------~l~~~---------------------------------~~L~~L~l~~n~l-~~lp-~~-~l~~L  330 (606)
T 3vq2_A          302 ---------------DVPKH---------------------------------FKWQSLSIIRCQL-KQFP-TL-DLPFL  330 (606)
T ss_dssp             ---------------CCCTT---------------------------------CCCSEEEEESCCC-SSCC-CC-CCSSC
T ss_pred             ---------------hcccc---------------------------------ccCCEEEcccccC-cccc-cC-CCCcc
Confidence                           00111                                 3444445554444 4444 23 55555


Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCC---CCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEe
Q 048829          561 KEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSL---PEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLD  636 (976)
Q Consensus       561 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~  636 (976)
                      ++|++++|..+..+ ....+++|++|++++|. +..+   +..+  ..+++|++|++++|. +..++.. ..+++|+.|+
T Consensus       331 ~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          331 KSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSD--LGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLD  405 (606)
T ss_dssp             CEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHH--HCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEE
T ss_pred             ceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhh--ccCCcccEeECCCCc-cccchhhccCCCCCCeeE
Confidence            55555554333333 22334555555555554 2222   2221  244555555555543 2222211 2334455555


Q ss_pred             eccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh
Q 048829          637 IQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA  716 (976)
Q Consensus       637 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  716 (976)
                      +++|...+..  +                                ...+         ..+ ++|++|++++|.+.+..|
T Consensus       406 l~~n~l~~~~--~--------------------------------~~~~---------~~l-~~L~~L~l~~n~l~~~~~  441 (606)
T 3vq2_A          406 FQHSTLKRVT--E--------------------------------FSAF---------LSL-EKLLYLDISYTNTKIDFD  441 (606)
T ss_dssp             CTTSEEESTT--T--------------------------------TTTT---------TTC-TTCCEEECTTSCCEECCT
T ss_pred             CCCCccCCcc--C--------------------------------hhhh---------hcc-ccCCEEECcCCCCCccch
Confidence            5544321111  0                                0000         111 677778888877777777


Q ss_pred             hhhcCCCCCceEEeecCCCccc-ccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCC
Q 048829          717 ERLDNNTSLETINISNCENLKI-LSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLT  795 (976)
Q Consensus       717 ~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~  795 (976)
                      ..+..+++|++|++++|...+. +|..+..+++|++|++++|...+..|..+..+++|++|++++|...+..|..+..++
T Consensus       442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred             hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence            7777888888888887655542 577777788888888888855555555667777888888888876666677777788


Q ss_pred             ccceEEEeCCCCCCcccC--CCCCccceeeecCCCCcc
Q 048829          796 SLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIW  831 (976)
Q Consensus       796 ~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~  831 (976)
                      +|++|++++|.++.+|..  ..+++|++|++++|+...
T Consensus       522 ~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             cCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence            888888888777777653  223357777777776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.8e-38  Score=372.81  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=77.5

Q ss_pred             cccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhc-cchhhhccccCceeec
Q 048829          123 RLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKK-LCADMGNLIKLHHLNN  199 (976)
Q Consensus       123 ~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l  199 (976)
                      .+++|+|++|.++.+ |.+|+++++|++|+|++|.+..+ |.+|+++++|++|++++| .+.. .|..|+++++|++|++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeec
Confidence            578888888888877 67888888888888888888876 677888888888888885 4444 4667888888888888


Q ss_pred             CCCCCcccc-ccccCCCCCCceec
Q 048829          200 SNTDSLEET-PLGIGKLTCLQTLC  222 (976)
Q Consensus       200 ~~~~~~~~l-p~~i~~L~~L~~L~  222 (976)
                      ++|. +..+ |..++++++|++|+
T Consensus       113 ~~n~-i~~l~~~~~~~l~~L~~L~  135 (606)
T 3t6q_A          113 IQTG-ISSIDFIPLHNQKTLESLY  135 (606)
T ss_dssp             TTSC-CSCGGGSCCTTCTTCCEEE
T ss_pred             cccC-cccCCcchhccCCcccEEE
Confidence            8887 6666 34477777777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=354.51  Aligned_cols=258  Identities=18%  Similarity=0.104  Sum_probs=154.3

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI  611 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~  611 (976)
                      ++|+.|++++|......+..+..+++|++|++++ +.++.++.  ...+++|++|++++|. +..++...+ ..+++|++
T Consensus       290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~~L~~  366 (844)
T 3j0a_A          290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF-KFLEKLQT  366 (844)
T ss_dssp             CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES-CCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS-CSCCCCCE
T ss_pred             CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC-CCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh-cCCCCCCE
Confidence            3444444444444444444555555666666655 34443322  2335556666666654 444444433 45666666


Q ss_pred             EEEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccc
Q 048829          612 LKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES  691 (976)
Q Consensus       612 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  691 (976)
                      |++++|. ++.++   .+++|+.|++++|.. +.+  |.                                         
T Consensus       367 L~Ls~N~-l~~i~---~~~~L~~L~l~~N~l-~~l--~~-----------------------------------------  398 (844)
T 3j0a_A          367 LDLRDNA-LTTIH---FIPSIPDIFLSGNKL-VTL--PK-----------------------------------------  398 (844)
T ss_dssp             EEEETCC-SCCCS---SCCSCSEEEEESCCC-CCC--CC-----------------------------------------
T ss_pred             EECCCCC-CCccc---CCCCcchhccCCCCc-ccc--cc-----------------------------------------
Confidence            6666653 22222   134456666655532 111  10                                         


Q ss_pred             ccccCCCCCceEEEEcCCCcchh-hhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCC-----CccC
Q 048829          692 LEVGNLPPSVKVLDVYGCPKLES-IAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNL-----ESFP  764 (976)
Q Consensus       692 ~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l-----~~~~  764 (976)
                           ...+++.|++++|.+.+. .+..+..+++|++|++++|......+ ..+..+++|++|++++|...     ...+
T Consensus       399 -----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~  473 (844)
T 3j0a_A          399 -----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW  473 (844)
T ss_dssp             -----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred             -----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch
Confidence                 014566777777665542 23345677788888888865433221 23445788888888888433     1222


Q ss_pred             CCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCccccc
Q 048829          765 EGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRF  844 (976)
Q Consensus       765 ~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  844 (976)
                      ..+..+++|++|++++|...+..|..+..+++|++|++++|.++.++...+.++|+.|++++|.+....+    .   .+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~----~---~~  546 (844)
T 3j0a_A          474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNP----D---VF  546 (844)
T ss_dssp             SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCS----C---CC
T ss_pred             hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCCh----h---Hh
Confidence            3455678888888888875555555678888888888888888888877777888888888888877655    2   34


Q ss_pred             CcccEEEEec
Q 048829          845 SSLRYLLIRG  854 (976)
Q Consensus       845 ~~L~~L~l~~  854 (976)
                      ++|+.|++++
T Consensus       547 ~~L~~l~l~~  556 (844)
T 3j0a_A          547 VSLSVLDITH  556 (844)
T ss_dssp             SSCCEEEEEE
T ss_pred             CCcCEEEecC
Confidence            5788888887

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=333.55  Aligned_cols=86  Identities=22%  Similarity=0.260  Sum_probs=60.9

Q ss_pred             CcccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccc-hhhhccccCceee
Q 048829          122 QRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHLN  198 (976)
Q Consensus       122 ~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~  198 (976)
                      +.+++|+|++|.++.+ +.+|.++++|++|+|++|.+..+ |..|+++++|++|++++| .+..+| ..|+++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccc
Confidence            3577778877777766 45677777788888877777776 355777777777777774 455554 4577777777777


Q ss_pred             cCCCCCccccc
Q 048829          199 NSNTDSLEETP  209 (976)
Q Consensus       199 l~~~~~~~~lp  209 (976)
                      +++|. +..+|
T Consensus       107 L~~n~-l~~l~  116 (570)
T 2z63_A          107 AVETN-LASLE  116 (570)
T ss_dssp             CTTSC-CCCST
T ss_pred             ccccc-cccCC
Confidence            77776 55544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=342.81  Aligned_cols=105  Identities=19%  Similarity=0.210  Sum_probs=57.7

Q ss_pred             CCceEEEEcCCCcc-----hhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829          699 PSVKVLDVYGCPKL-----ESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL  773 (976)
Q Consensus       699 ~~L~~L~L~~~~~~-----~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L  773 (976)
                      ++|+.|++++|.+.     +..+..+.++++|++|++++|...+..|..+.++++|++|++++| .++.+|..... ++|
T Consensus       451 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L  528 (844)
T 3j0a_A          451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-ANL  528 (844)
T ss_dssp             TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SCC
T ss_pred             CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh-ccc
Confidence            55666666666554     223344556666666666665433333455566666666666666 44445444333 566


Q ss_pred             cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829          774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELP  808 (976)
Q Consensus       774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~  808 (976)
                      +.|++++|...+..|..+   .+|+.|++++|.+.
T Consensus       529 ~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          529 EILDISRNQLLAPNPDVF---VSLSVLDITHNKFI  560 (844)
T ss_dssp             CEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred             cEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence            666666666444444332   35566666665544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.4e-33  Score=325.33  Aligned_cols=144  Identities=18%  Similarity=0.180  Sum_probs=95.4

Q ss_pred             CCceEEEEcCCCcchhhh--hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEE
Q 048829          699 PSVKVLDVYGCPKLESIA--ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL  776 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  776 (976)
                      ++|++|++++|.+.+..+  ..+..+++|++|++++| .++.+|..+..+++|++|++++| .++.+|....  ++|++|
T Consensus       361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~--~~L~~L  436 (549)
T 2z81_A          361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIP--QTLEVL  436 (549)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTTSC--TTCSEE
T ss_pred             ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccchhc--CCceEE
Confidence            567777777776655432  45777788888888885 45567777777888888888887 4555654332  478888


Q ss_pred             EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      ++++|. +..++   ..+++|++|++++|.++.+|....+++|++|++++|.+....+    ..+..+++|+.|++++
T Consensus       437 ~Ls~N~-l~~~~---~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          437 DVSNNN-LDSFS---LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD----GIFDRLTSLQKIWLHT  506 (549)
T ss_dssp             ECCSSC-CSCCC---CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCT----TGGGGCTTCCEEECCS
T ss_pred             ECCCCC-hhhhc---ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCH----HHHhcCcccCEEEecC
Confidence            888876 33332   4677788888888777777665556666666666666554433    3355556666666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=330.29  Aligned_cols=123  Identities=21%  Similarity=0.247  Sum_probs=98.4

Q ss_pred             CCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccc-hhhhccC
Q 048829           92 QHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLP-ESVNKLY  168 (976)
Q Consensus        92 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~  168 (976)
                      +.+|+|.+.++.       ...+++..| ++++|++|+|++|.++.+ |..|+++++|++|+|++|.+..+| ..|++++
T Consensus        28 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (570)
T 2z63_A           28 FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (570)
T ss_dssp             SSCCEEECCSCC-------CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             ccccEEEccCCc-------cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence            468888776553       234555444 999999999999998887 567899999999999999998875 6789999


Q ss_pred             CccEEecccccchhccch-hhhccccCceeecCCCCCccc--cccccCCCCCCceecc
Q 048829          169 NLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSNTDSLEE--TPLGIGKLTCLQTLCN  223 (976)
Q Consensus       169 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~~  223 (976)
                      +|++|++++ +.+..+|. .|+++++|++|++++|. +..  +|..++++++|++|++
T Consensus       101 ~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l  156 (570)
T 2z63_A          101 SLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDL  156 (570)
T ss_dssp             TCCEEECTT-SCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccc-cccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeC
Confidence            999999998 47777765 48999999999999987 554  6777888888888854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9e-33  Score=324.09  Aligned_cols=207  Identities=22%  Similarity=0.234  Sum_probs=135.6

Q ss_pred             cccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccc-hhhhccCCccEEecccccchhccchh-h
Q 048829          112 PSILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCAD-M  188 (976)
Q Consensus       112 ~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i  188 (976)
                      ..+|+.++  +.|++|+|++|.++.+ |.+|+++++|++|+|++|.+..+| .+|+++++|++|++++| .+..+|.. |
T Consensus        18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~   94 (549)
T 2z81_A           18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWF   94 (549)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHH
T ss_pred             ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHh
Confidence            34555544  6788999999988877 678888999999999999888774 67889999999999984 66666655 8


Q ss_pred             hccccCceeecCCCCCccc--cccccCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhcc
Q 048829          189 GNLIKLHHLNNSNTDSLEE--TPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARL  266 (976)
Q Consensus       189 ~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l  266 (976)
                      +++++|++|++++|. +..  +|..++++++|++|++......                             .......+
T Consensus        95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------~~~~~~~~  144 (549)
T 2z81_A           95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------------SEIRRIDF  144 (549)
T ss_dssp             TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTT
T ss_pred             ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccc-----------------------------cccCHhhh
Confidence            899999999999887 664  4566888888888854432210                             00001124


Q ss_pred             CCCCCCceEEEEEccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCC-
Q 048829          267 DGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTA-  345 (976)
Q Consensus       267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-  345 (976)
                      .++++|+.|+++++....           .....+..+++|+.|++.++....+|.++.. .+++|++|++++|...+. 
T Consensus       145 ~~l~~L~~L~L~~n~l~~-----------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~  212 (549)
T 2z81_A          145 AGLTSLNELEIKALSLRN-----------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQ  212 (549)
T ss_dssp             TTCCEEEEEEEEETTCCE-----------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCC
T ss_pred             hcccccCeeeccCCcccc-----------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCcccccc
Confidence            455666677776554311           1223455566677777776666555555432 266777777777665432 


Q ss_pred             ---CCCCCCCCCCceEEEeCC
Q 048829          346 ---LPSVGQLPSLKHLTVRGV  363 (976)
Q Consensus       346 ---l~~l~~l~~L~~L~L~~~  363 (976)
                         .+....+++|+.|+++++
T Consensus       213 ~~~~~~~~~~~~L~~L~l~~n  233 (549)
T 2z81_A          213 FSPLPVDEVSSPMKKLAFRGS  233 (549)
T ss_dssp             CCCCSSCCCCCCCCEEEEESC
T ss_pred             ccccchhhhhhcccceecccc
Confidence               122334566666666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.3e-33  Score=328.24  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=59.5

Q ss_pred             CCCccccchhhhccCCccEEecccccchhc------------------cchhhh--ccccCceeecCCCCCccccccccC
Q 048829          154 GTNIRTLPESVNKLYNLHSLLLEDCDRLKK------------------LCADMG--NLIKLHHLNNSNTDSLEETPLGIG  213 (976)
Q Consensus       154 ~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~i~  213 (976)
                      +|.++.+|.+|+++++|++|+|++| .+..                  +|..++  ++++|++|++++|.....+|..++
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            4677779999999999999999995 5666                  899988  999999999999987778888899


Q ss_pred             CCCCCceecc
Q 048829          214 KLTCLQTLCN  223 (976)
Q Consensus       214 ~L~~L~~L~~  223 (976)
                      ++++|++|++
T Consensus       271 ~l~~L~~L~L  280 (636)
T 4eco_A          271 ALPEMQLINV  280 (636)
T ss_dssp             TCSSCCEEEC
T ss_pred             cCCCCCEEEC
Confidence            9999988853

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.1e-32  Score=315.08  Aligned_cols=224  Identities=17%  Similarity=0.158  Sum_probs=154.3

Q ss_pred             ccccEEEeeccCCcccCcccc-----CCCCCccEEEeecCCCCCCCCCcCC-----CCCCcEEEEccCCCCCCCCCcccc
Q 048829          534 CRLEYLRLRYCEGLVKLPQSS-----LSLSSLKEIEIYKCSSLVSFPEVAL-----PSKLKKIEIRECDALKSLPEPWMC  603 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~-----~~l~~L~~L~l~~c~~l~~l~~~~~-----~~~L~~L~l~~~~~l~~l~~~~~~  603 (976)
                      ++|+.|++++|...+.+|..+     ..+++|+.++++++ .+ .+|....     -.+|+.|++++|. +..++..   
T Consensus       247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~-~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---  320 (520)
T 2z7x_B          247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VF-GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCP---  320 (520)
T ss_dssp             SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CC-CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCCC---
T ss_pred             CcccEEEeecccccCccccchhhcccccCceeEecccccc-ce-ecchhhhhcccccCceeEEEcCCCc-cccccch---
Confidence            589999999988777788777     77888888888884 33 5552110     1457777777776 3222210   


Q ss_pred             CCCCcccEEEEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCC
Q 048829          604 DTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKN  683 (976)
Q Consensus       604 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  683 (976)
                      ..+++                       |++|++++|...+.+  |..+..+                            
T Consensus       321 ~~l~~-----------------------L~~L~Ls~n~l~~~~--~~~~~~l----------------------------  347 (520)
T 2z7x_B          321 SKISP-----------------------FLHLDFSNNLLTDTV--FENCGHL----------------------------  347 (520)
T ss_dssp             SSCCC-----------------------CCEEECCSSCCCTTT--TTTCCCC----------------------------
T ss_pred             hhCCc-----------------------ccEEEeECCccChhh--hhhhccC----------------------------
Confidence            23444                       455555554322211  2211111                            


Q ss_pred             CcccccccccccCCCCCceEEEEcCCCcch--hhhhhhcCCCCCceEEeecCCCccccccc-ccCCCCCcEEEccCCCCC
Q 048829          684 ELPATLESLEVGNLPPSVKVLDVYGCPKLE--SIAERLDNNTSLETINISNCENLKILSSG-LHNLCQLQQIGIGGCGNL  760 (976)
Q Consensus       684 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~~l  760 (976)
                                     ++|++|++++|.+.+  .+|..+..+++|++|++++|.....+|.. +..+++|++|++++|...
T Consensus       348 ---------------~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          348 ---------------TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             ---------------SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             ---------------CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence                           677888888887765  56777888889999999887655546654 677889999999988665


Q ss_pred             CccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchh
Q 048829          761 ESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSM  834 (976)
Q Consensus       761 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~  834 (976)
                      +.+|..+.  ++|++|++++|. ++.+|..+..+++|++|++++|.++.++..  ..+++|++|++++|+......
T Consensus       413 ~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          413 DTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            66665443  689999999887 558888778889999999999888888764  346789999999998876543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.9e-33  Score=327.86  Aligned_cols=364  Identities=15%  Similarity=0.146  Sum_probs=191.9

Q ss_pred             CCCCCCCceeEeeccCCCC------------------CCCccC--CCCCCCccEEEEecCCCCCCCC-CCCCCCCCceEE
Q 048829          301 LKPHKNLEQFGICGYGGTK------------------FPTWLG--DSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHLT  359 (976)
Q Consensus       301 l~~~~~L~~L~l~~~~~~~------------------~p~~~~--~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~  359 (976)
                      +..+++|+.|+++++....                  +|..+.  .  +++|++|++++|...+.+| .++.+++|++|+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc--cCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            3445555566666555554                  777776  5  8899999999998887777 788899999999


Q ss_pred             EeCCCCcee--eCccccCCCCCCCCCCcceeecccccccccccccCCCCCccCCcccceeecccCcccccCCCCCCCCcc
Q 048829          360 VRGVSRVKR--LGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLE  437 (976)
Q Consensus       360 L~~~~~l~~--i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~  437 (976)
                      +++|..+..  ++..+.         +|.                    ....+++|++|++++| +++ .+|..     
T Consensus       280 Ls~n~~l~~~~lp~~~~---------~L~--------------------~~~~l~~L~~L~L~~n-~l~-~ip~~-----  323 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQ---------ALA--------------------DAPVGEKIQIIYIGYN-NLK-TFPVE-----  323 (636)
T ss_dssp             CTTCTTSCHHHHHHHHH---------HHH--------------------HSGGGGTCCEEECCSS-CCS-SCCCH-----
T ss_pred             CcCCCCCccccchHHHH---------hhh--------------------ccccCCCCCEEECCCC-cCC-ccCch-----
Confidence            988752321  211100         000                    0233477777777777 565 55520     


Q ss_pred             eEEEeccccccccCCCCCcccEEEEccccceeeecccCCCCCCceEEeccCCCCCcccccccCCCCCeEEEcCCCCcccc
Q 048829          438 MLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSL  517 (976)
Q Consensus       438 ~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l  517 (976)
                                 ..+..+++|+.|+++++...                                              ..+
T Consensus       324 -----------~~l~~l~~L~~L~L~~N~l~----------------------------------------------g~i  346 (636)
T 4eco_A          324 -----------TSLQKMKKLGMLECLYNQLE----------------------------------------------GKL  346 (636)
T ss_dssp             -----------HHHTTCTTCCEEECCSCCCE----------------------------------------------EEC
T ss_pred             -----------hhhccCCCCCEEeCcCCcCc----------------------------------------------cch
Confidence                       01112222222222222111                                              011


Q ss_pred             hhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCC-ccEEEeecCCCCCCCCCcCC---CCCCcEEEEccCCC
Q 048829          518 VAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSS-LKEIEIYKCSSLVSFPEVAL---PSKLKKIEIRECDA  593 (976)
Q Consensus       518 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~~~~  593 (976)
                      + .     +..    .++|+.|++++|... .+|..+..+++ |++|++++ +.++.+|....   +++|++|++++|..
T Consensus       347 p-~-----~~~----l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          347 P-A-----FGS----EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             C-C-----CEE----EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS-SCCSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             h-h-----hCC----CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC-CcCcccchhhhhcccCccCEEECcCCcC
Confidence            1 0     000    156777777776554 67777788888 88888888 45667775322   23688888888874


Q ss_pred             CCCCCCccc-----cCCCCcccEEEEecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcc
Q 048829          594 LKSLPEPWM-----CDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLE  666 (976)
Q Consensus       594 l~~l~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~  666 (976)
                      ...+|..+.     .-.+++|++|++++|.. +.++..  ..+++|+.|++++|... .+  |......         + 
T Consensus       415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~-~i--~~~~~~~---------~-  480 (636)
T 4eco_A          415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLT-EI--PKNSLKD---------E-  480 (636)
T ss_dssp             TTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCS-BC--CSSSSEE---------T-
T ss_pred             CCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCC-Cc--CHHHhcc---------c-
Confidence            443333221     00445677777776643 344432  23455666666665422 22  2211110         0 


Q ss_pred             eEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhc--CCCCCceEEeecCCCccccccccc
Q 048829          667 NLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLD--NNTSLETINISNCENLKILSSGLH  744 (976)
Q Consensus       667 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~  744 (976)
                         ...|.++                      ++|++|++++|.+. .+|..+.  .+++|++|++++|... .+|..+.
T Consensus       481 ---~~~~~~l----------------------~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  533 (636)
T 4eco_A          481 ---NENFKNT----------------------YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPL  533 (636)
T ss_dssp             ---TEECTTG----------------------GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGG
T ss_pred             ---ccccccc----------------------CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC-CcChhhh
Confidence               0000000                      25556666665554 4444444  5555555555554333 2555555


Q ss_pred             CCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeee
Q 048829          745 NLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRI  824 (976)
Q Consensus       745 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l  824 (976)
                      ++++|++|++++|+                  ++++|...+.+|..+..+++|++|++++|.+..+|.. +.++|+.|++
T Consensus       534 ~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~L~~L~L  594 (636)
T 4eco_A          534 NSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-ITPNISVLDI  594 (636)
T ss_dssp             GCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CCTTCCEEEC
T ss_pred             cCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-HhCcCCEEEC
Confidence            55555555554332                  1133444455555555556666666666555555433 3355566666


Q ss_pred             cCCCCcc
Q 048829          825 EGNMGIW  831 (976)
Q Consensus       825 ~~~~~~~  831 (976)
                      ++|++..
T Consensus       595 s~N~l~~  601 (636)
T 4eco_A          595 KDNPNIS  601 (636)
T ss_dssp             CSCTTCE
T ss_pred             cCCCCcc
Confidence            5555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-32  Score=324.09  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=98.4

Q ss_pred             CCccccchhhhccCCccEEecccccchhc------------------cchhhh--ccccCceeecCCCCCccccccccCC
Q 048829          155 TNIRTLPESVNKLYNLHSLLLEDCDRLKK------------------LCADMG--NLIKLHHLNNSNTDSLEETPLGIGK  214 (976)
Q Consensus       155 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~i~~  214 (976)
                      |.+..+|.+|+++++|++|+|++| .+..                  +|..++  +|++|++|++++|.....+|..+++
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            556668999999999999999995 5665                  898877  9999999999999877888988999


Q ss_pred             CCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhh-hhhhccCCCCCCceEEEEEccCCCCCCChhhhh
Q 048829          215 LTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGN-AKEARLDGKKNLKELLLRWTRSTDGSSSREAET  293 (976)
Q Consensus       215 L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  293 (976)
                      |++|++|++.....                             ... ..+..                            
T Consensus       514 L~~L~~L~Ls~N~~-----------------------------lsg~~iP~~----------------------------  536 (876)
T 4ecn_A          514 LPELQSLNIACNRG-----------------------------ISAAQLKAD----------------------------  536 (876)
T ss_dssp             CSSCCEEECTTCTT-----------------------------SCHHHHHHH----------------------------
T ss_pred             CCCCCEEECcCCCC-----------------------------cccccchHH----------------------------
Confidence            99999885322110                             000 00000                            


Q ss_pred             Hhhhcc-CCCCCCCCceeEeeccCCCCCCC--ccCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceEEEeCC
Q 048829          294 EMGVLD-MLKPHKNLEQFGICGYGGTKFPT--WLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGV  363 (976)
Q Consensus       294 ~~~~l~-~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~  363 (976)
                       ...+. .+..+++|+.|+++++....+|.  ++..  +++|+.|++++|... .+|.++.+++|+.|++++|
T Consensus       537 -i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          537 -WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             -HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSS
T ss_pred             -HHhhhhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCC
Confidence             00111 33345567777777776666776  5554  667777777766654 5555666666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3e-31  Score=308.56  Aligned_cols=104  Identities=24%  Similarity=0.282  Sum_probs=68.6

Q ss_pred             ccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchhhhc
Q 048829          113 SILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGN  190 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~  190 (976)
                      .+|..++  ++|++|+|++|.++.+ |..|.++++|++|+|++|.+..+ |..|+++++|++|+|++ +.+..+|..  .
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~   88 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NKLVKISCH--P   88 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-SCCCEEECC--C
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-CceeecCcc--c
Confidence            4454444  6677777777777666 35667777777777777777766 56677777777777777 356666655  6


Q ss_pred             cccCceeecCCCCCccc--cccccCCCCCCceec
Q 048829          191 LIKLHHLNNSNTDSLEE--TPLGIGKLTCLQTLC  222 (976)
Q Consensus       191 L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~  222 (976)
                      +++|++|++++|. +..  +|..++++++|++|+
T Consensus        89 l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~  121 (520)
T 2z7x_B           89 TVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLG  121 (520)
T ss_dssp             CCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEeccCCc-cccccchhhhccCCcceEEE
Confidence            7777777777776 443  345566666666664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=1e-31  Score=321.79  Aligned_cols=239  Identities=13%  Similarity=0.116  Sum_probs=121.7

Q ss_pred             ccccEEEeeccCCcccCccccCCCCC-ccEEEeecCCCCCCCCCcCC-C--CCCcEEEEccCCCCCCCCCc---cccCCC
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSS-LKEIEIYKCSSLVSFPEVAL-P--SKLKKIEIRECDALKSLPEP---WMCDTS  606 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~-~--~~L~~L~l~~~~~l~~l~~~---~~~~~l  606 (976)
                      ++|+.|++++|... .+|..+..+++ |++|++++ +.++.+|.... .  ++|+.|++++|.....+|..   ...-.+
T Consensus       595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~  672 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG  672 (876)
T ss_dssp             SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS-SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred             CcceEEECcCCccc-cchHHHhhccccCCEEECcC-CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence            56666666666554 66666777777 77777777 34556664221 2  33777777777633322211   110123


Q ss_pred             CcccEEEEecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCC
Q 048829          607 SSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNE  684 (976)
Q Consensus       607 ~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  684 (976)
                      ++|+.|++++|.. ..+|..  ..+++|+.|++++|. ++.+  |......         +    ...|.++        
T Consensus       673 ~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~-L~~i--p~~~~~~---------~----~~~l~nl--------  727 (876)
T 4ecn_A          673 INASTVTLSYNEI-QKFPTELFATGSPISTIILSNNL-MTSI--PENSLKP---------K----DGNYKNT--------  727 (876)
T ss_dssp             CCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCC-CSCC--CTTSSSC---------T----TSCCTTG--------
T ss_pred             CCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCc-CCcc--ChHHhcc---------c----ccccccc--------
Confidence            4566666666532 234332  234455555555552 2222  2211110         0    0000000        


Q ss_pred             cccccccccccCCCCCceEEEEcCCCcchhhhhhhc--CCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCc
Q 048829          685 LPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLD--NNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLES  762 (976)
Q Consensus       685 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~  762 (976)
                                    ++|+.|+|++|.+. .+|..+.  .+++|+.|++++|.. ..+|..+.++++|+.|++++|+    
T Consensus       728 --------------~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~----  787 (876)
T 4ecn_A          728 --------------YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQR----  787 (876)
T ss_dssp             --------------GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCB----
T ss_pred             --------------CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCC----
Confidence                          24555555555444 4444444  555555555555432 2245555555555555555432    


Q ss_pred             cCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchh
Q 048829          763 FPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSM  834 (976)
Q Consensus       763 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~  834 (976)
                                    ++++|...+.+|..+..+++|+.|++++|.+..+|.. +.++|+.|++++|++....+
T Consensus       788 --------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          788 --------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-LTPQLYILDIADNPNISIDV  844 (876)
T ss_dssp             --------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CCSSSCEEECCSCTTCEEEC
T ss_pred             --------------CcccccccccChHHHhcCCCCCEEECCCCCCCccCHh-hcCCCCEEECCCCCCCccCh
Confidence                          1223555566666666677777777777776666544 34567777777776655443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=8.8e-31  Score=313.85  Aligned_cols=110  Identities=17%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             CCceEEEEcCCCcch-hhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEE
Q 048829          699 PSVKVLDVYGCPKLE-SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRL  776 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L  776 (976)
                      ++|+.|++++|...+ ..|..+..+++|++|++++|...+..|..|.++++|++|+|++| .++.++. .+..+++|++|
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L  547 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVL  547 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEE
Confidence            445555555554333 23445556666666666665433334555666666666666666 3333332 34455666666


Q ss_pred             EecCCcCcccCCCcCCCC-CccceEEEeCCCCCC
Q 048829          777 EIYDCKRLEALPKGLHNL-TSLQQLTIIGGELPS  809 (976)
Q Consensus       777 ~l~~c~~l~~~~~~l~~l-~~L~~L~l~~~~l~~  809 (976)
                      ++++|...+..|..+..+ ++|++|++++|.+..
T Consensus       548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            666666555555555555 456666666666553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=2.4e-29  Score=301.36  Aligned_cols=133  Identities=17%  Similarity=0.124  Sum_probs=103.3

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccc-ccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKI-LSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  777 (976)
                      ++++.++++.|......+..+..+++|++|++++|..... .|..+..+++|++|++++|...+..|..+..+++|++|+
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            6788888888888888888888888999999988776554 477788888999999998854444456677788899999


Q ss_pred             ecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC---CCccceeeecCCCCcc
Q 048829          778 IYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL---PTNLHSLRIEGNMGIW  831 (976)
Q Consensus       778 l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~---~~~L~~L~l~~~~~~~  831 (976)
                      +++|......|..+..+++|++|++++|.|..++...+   +++|+.|++++|+..-
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99887544445677888889999988888888766533   4678888888777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=6.8e-29  Score=290.93  Aligned_cols=133  Identities=17%  Similarity=0.116  Sum_probs=93.9

Q ss_pred             CCceEEEEcCCCcch--hhhhhhcCCCCCceEEeecCCCcccccc-cccCCCCCcEEEccCCCCCCccCCCCCCCCCccE
Q 048829          699 PSVKVLDVYGCPKLE--SIAERLDNNTSLETINISNCENLKILSS-GLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRR  775 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  775 (976)
                      ++|++|++++|.+.+  .+|..+..+++|++|++++|.....+|. .+..+++|++|++++|...+.+|..+.  ++|++
T Consensus       377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~  454 (562)
T 3a79_B          377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV  454 (562)
T ss_dssp             SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred             CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence            567777777776655  4456677788888888888655543544 366678888888888865555554332  57888


Q ss_pred             EEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchh
Q 048829          776 LEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSM  834 (976)
Q Consensus       776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~  834 (976)
                      |++++|. ++.+|..+..+++|++|++++|.++.++..  ..+++|+.|++++|+......
T Consensus       455 L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          455 LDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             EECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             EECCCCc-CcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            8888886 667777777888888888888888877764  446788888888887765443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=2.6e-29  Score=283.55  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=41.5

Q ss_pred             cccccCCcccEEEccCCccccccccccCCCcccEEecCCCCcc-ccchhhhccCCccEEecccccchhccchhhhccccC
Q 048829          116 PKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL  194 (976)
Q Consensus       116 ~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L  194 (976)
                      |+-.+.++||+|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++++|+++++++|..           .+|
T Consensus         5 p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l   73 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQA   73 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTC
T ss_pred             ccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCC
Confidence            3344567888888888888888888888888888888888877 7788888888887777777631           567


Q ss_pred             ceeecCCCCCcccccc
Q 048829          195 HHLNNSNTDSLEETPL  210 (976)
Q Consensus       195 ~~L~l~~~~~~~~lp~  210 (976)
                      ++|++++|. +..+|.
T Consensus        74 ~~L~l~~~~-l~~lp~   88 (454)
T 1jl5_A           74 HELELNNLG-LSSLPE   88 (454)
T ss_dssp             SEEECTTSC-CSCCCS
T ss_pred             CEEEecCCc-cccCCC
Confidence            888888877 666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=5.2e-29  Score=291.94  Aligned_cols=105  Identities=30%  Similarity=0.319  Sum_probs=78.1

Q ss_pred             ccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchhhhc
Q 048829          113 SILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGN  190 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~  190 (976)
                      .+|..++  ++|++|+|++|.++.+ |.+|+++++|++|+|++|.++.+ |..|+++++|++|+|++ +.+..+|..  .
T Consensus        45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~  119 (562)
T 3a79_B           45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC--P  119 (562)
T ss_dssp             SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC--C
T ss_pred             cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc--c
Confidence            4555444  6788888888888877 46778888888888888888877 56788888888888888 467777766  7


Q ss_pred             cccCceeecCCCCCccccc--cccCCCCCCceecc
Q 048829          191 LIKLHHLNNSNTDSLEETP--LGIGKLTCLQTLCN  223 (976)
Q Consensus       191 L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~~  223 (976)
                      +++|++|++++|. +..+|  ..++++++|++|++
T Consensus       120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L  153 (562)
T 3a79_B          120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGL  153 (562)
T ss_dssp             CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEE
T ss_pred             cccCCEEECCCCC-ccccCchHhhcccCcccEEec
Confidence            8888888888887 66654  45777777777743

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=8.3e-29  Score=279.41  Aligned_cols=95  Identities=26%  Similarity=0.305  Sum_probs=61.9

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      ++|++|++++|.... +| .+..+++|++|++++ +.++.+|.  .+++|++|++++|. ++.+|. +  ..+++|++|+
T Consensus       173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~-N~l~~l~~--~~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~  243 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN-NSLKKLPD--LPLSLESIVAGNNI-LEELPE-L--QNLPFLTTIY  243 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS-SCCSSCCC--CCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEE
T ss_pred             ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC-CcCCcCCC--CcCcccEEECcCCc-CCcccc-c--CCCCCCCEEE
Confidence            356666666664433 55 577888889998888 46666664  34688888888886 667764 2  4677788888


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccC
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRC  640 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~  640 (976)
                      +++|. ++.++.  .+++|+.|++++|
T Consensus       244 l~~N~-l~~l~~--~~~~L~~L~l~~N  267 (454)
T 1jl5_A          244 ADNNL-LKTLPD--LPPSLEALNVRDN  267 (454)
T ss_dssp             CCSSC-CSSCCS--CCTTCCEEECCSS
T ss_pred             CCCCc-CCcccc--cccccCEEECCCC
Confidence            87763 333332  2345666666655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=1.3e-27  Score=269.87  Aligned_cols=87  Identities=24%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             ccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccC
Q 048829          115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL  194 (976)
Q Consensus       115 ~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L  194 (976)
                      +..+.++++|++|++++|.++.+| .++.+++|++|+|++|.++.+|  ++++++|++|++++| .+..+|  ++++++|
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L  108 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKL  108 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence            334457888888888888888776 6888888888888888888875  778888888888884 566665  7788888


Q ss_pred             ceeecCCCCCcccc
Q 048829          195 HHLNNSNTDSLEET  208 (976)
Q Consensus       195 ~~L~l~~~~~~~~l  208 (976)
                      ++|++++|. +..+
T Consensus       109 ~~L~L~~N~-l~~l  121 (457)
T 3bz5_A          109 TYLNCDTNK-LTKL  121 (457)
T ss_dssp             CEEECCSSC-CSCC
T ss_pred             CEEECCCCc-CCee
Confidence            888888876 4444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=1.4e-25  Score=255.95  Aligned_cols=96  Identities=20%  Similarity=0.339  Sum_probs=70.0

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeec
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNN  199 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  199 (976)
                      .+++++.|+++++.+..+|. +..+++|++|+|++|.+..+|. ++++++|++|++++| .+..+|. ++++++|++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL  119 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred             HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence            56678888888888877763 7778888888888888887766 888888888888884 6666665 888888888888


Q ss_pred             CCCCCccccccccCCCCCCcee
Q 048829          200 SNTDSLEETPLGIGKLTCLQTL  221 (976)
Q Consensus       200 ~~~~~~~~lp~~i~~L~~L~~L  221 (976)
                      ++|. +..+|. ++++++|++|
T Consensus       120 ~~n~-l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A          120 FNNQ-ITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             CSSC-CCCCGG-GTTCTTCSEE
T ss_pred             CCCC-CCCChH-HcCCCCCCEE
Confidence            8876 555543 4444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.8e-25  Score=255.21  Aligned_cols=265  Identities=16%  Similarity=0.118  Sum_probs=181.9

Q ss_pred             ccccEEEeeccCCcccCccc-cCCCCCccEEEeecCCCCCCCCCcCC----CCCCcEEEEccCCCCCCCCCcccc-----
Q 048829          534 CRLEYLRLRYCEGLVKLPQS-SLSLSSLKEIEIYKCSSLVSFPEVAL----PSKLKKIEIRECDALKSLPEPWMC-----  603 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~----~~~L~~L~l~~~~~l~~l~~~~~~-----  603 (976)
                      ++|++|++++|......|.. +..+++|++|++++ +.++.++....    ..+|+.|++++|. +..++.....     
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~  206 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCG  206 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHC
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhhhccccccccccccccCc-ccccchhhccccccc
Confidence            67888888888776666655 78899999999998 45555543221    3678889998887 5555543220     


Q ss_pred             --CCCCcccEEEEecCCCCcccccc----cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCcc
Q 048829          604 --DTSSSLEILKIWDCHSLTYIAEV----QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLT  677 (976)
Q Consensus       604 --~~l~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  677 (976)
                        ..+++|++|++++|......+..    ....+|+.|++++|......                               
T Consensus       207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------  255 (455)
T 3v47_A          207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------------------------  255 (455)
T ss_dssp             CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-------------------------------
T ss_pred             cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc-------------------------------
Confidence              24567888888887654433322    12356777777777543321                               


Q ss_pred             ccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCC
Q 048829          678 CIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGC  757 (976)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~  757 (976)
                        +....+...........-+++|++|++++|.+.+..|..+..+++|++|++++|......|..+.++++|++|++++|
T Consensus       256 --~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          256 --FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             --TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             --cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence              000000000000000011268999999999998888889999999999999997666666778888999999999999


Q ss_pred             CCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccch
Q 048829          758 GNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKS  833 (976)
Q Consensus       758 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~  833 (976)
                      ...+..|..+..+++|++|++++|...+..|..+..+++|++|++++|.++.++..  ..+++|++|++++|++....
T Consensus       334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            54444455667788999999999986666678888999999999999999887763  33567777777777665443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=6.3e-25  Score=250.76  Aligned_cols=207  Identities=18%  Similarity=0.139  Sum_probs=130.1

Q ss_pred             CCceEEEEcCCCcchhhhh--------hhcCCCCCceEEeecCCCcccccccccC---CCCCcEEEccCCCCCCccCC--
Q 048829          699 PSVKVLDVYGCPKLESIAE--------RLDNNTSLETINISNCENLKILSSGLHN---LCQLQQIGIGGCGNLESFPE--  765 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~--------~~~~l~~L~~L~l~~c~~l~~lp~~~~~---l~~L~~L~l~~~~~l~~~~~--  765 (976)
                      .+|+.|++++|...+..+.        .+..+++|++|++++|......|..+..   .++|+.|++++|........  
T Consensus       180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  259 (455)
T 3v47_A          180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT  259 (455)
T ss_dssp             CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred             ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence            3556666666555443222        1234456666666665544444444433   25666666666543321100  


Q ss_pred             ----------CCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccch
Q 048829          766 ----------GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKS  833 (976)
Q Consensus       766 ----------~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~  833 (976)
                                .....++|++|++++|...+..|..+..+++|++|++++|.+..++..  ..+++|++|++++|.+....
T Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  339 (455)
T 3v47_A          260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID  339 (455)
T ss_dssp             SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence                      011235778888888776666677777788888888888777766543  33577888888887775554


Q ss_pred             hhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecC
Q 048829          834 MIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYD  912 (976)
Q Consensus       834 ~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~  912 (976)
                      +    ..+.++++|++|++++ +...+..|..+         ..+++|++|++++ +.++.+|. .+..+++|++|++++
T Consensus       340 ~----~~~~~l~~L~~L~Ls~-N~l~~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          340 S----RMFENLDKLEVLDLSY-NHIRALGDQSF---------LGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             G----GGGTTCTTCCEEECCS-SCCCEECTTTT---------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             h----hHhcCcccCCEEECCC-CcccccChhhc---------cccccccEEECCC-CccccCCHhHhccCCcccEEEccC
Confidence            4    4577888888888888 33333334443         5788888888888 57777776 457788888888888


Q ss_pred             CCCccccC
Q 048829          913 CPKLKYFP  920 (976)
Q Consensus       913 c~~l~~i~  920 (976)
                      |+.....|
T Consensus       405 N~l~~~~~  412 (455)
T 3v47_A          405 NPWDCSCP  412 (455)
T ss_dssp             SCBCCCTT
T ss_pred             CCcccCCC
Confidence            77555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=6.2e-24  Score=242.39  Aligned_cols=303  Identities=17%  Similarity=0.213  Sum_probs=192.8

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      ++|+.|++++|......+  +..+++|++|++++ +.++.++....+++|++|++++|. +..++. +  ..+++|++|+
T Consensus        90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~  162 (466)
T 1o6v_A           90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFN-NQITDIDPLKNLTNLNRLELSSNT-ISDISA-L--SGLTSLQQLS  162 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS-SCCCCCGGGTTCTTCSEEEEEEEE-ECCCGG-G--TTCTTCSEEE
T ss_pred             ccCCEEECCCCccccChh--hcCCCCCCEEECCC-CCCCCChHHcCCCCCCEEECCCCc-cCCChh-h--ccCCcccEee
Confidence            455555555554433222  55555666666655 344444444445556666665554 444332 1  3455555555


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE  693 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  693 (976)
                      +++  .+..++....+++|+.|++++|. ++.+  + .                                          
T Consensus       163 l~~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~-~------------------------------------------  194 (466)
T 1o6v_A          163 FGN--QVTDLKPLANLTTLERLDISSNK-VSDI--S-V------------------------------------------  194 (466)
T ss_dssp             EEE--SCCCCGGGTTCTTCCEEECCSSC-CCCC--G-G------------------------------------------
T ss_pred             cCC--cccCchhhccCCCCCEEECcCCc-CCCC--h-h------------------------------------------
Confidence            543  12222223334445555555543 1111  0 0                                          


Q ss_pred             ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829          694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL  773 (976)
Q Consensus       694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L  773 (976)
                      +..+ ++|++|++++|.+.+..+  ++.+++|++|++++|. ++.++ .+..+++|++|++++|. +..++. +..+++|
T Consensus       195 l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L  267 (466)
T 1o6v_A          195 LAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKL  267 (466)
T ss_dssp             GGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTC
T ss_pred             hccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCC
Confidence            1111 678888888887766555  6778888888888864 44443 46778888888888884 444443 5667888


Q ss_pred             cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829          774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR  853 (976)
Q Consensus       774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  853 (976)
                      ++|++++|. +..++. +..+++|++|++++|.+..++....+++|+.|++++|.+....+      +..+++|++|+++
T Consensus       268 ~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~  339 (466)
T 1o6v_A          268 TELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFY  339 (466)
T ss_dssp             SEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECC
T ss_pred             CEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh------hccCccCCEeECC
Confidence            889988887 444444 77888889999988888887776677889999999888766543      5688899999998


Q ss_pred             ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCC
Q 048829          854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPE  921 (976)
Q Consensus       854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~  921 (976)
                      +|  .+..++ .         +..+++|+.|++++| .+..++. +..+++|+.|++++|+ ++.+|.
T Consensus       340 ~n--~l~~~~-~---------l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~  392 (466)
T 1o6v_A          340 NN--KVSDVS-S---------LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA-WTNAPV  392 (466)
T ss_dssp             SS--CCCCCG-G---------GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred             CC--ccCCch-h---------hccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence            83  344432 1         357889999999985 5555554 7888999999999854 454443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=3.9e-24  Score=234.50  Aligned_cols=194  Identities=18%  Similarity=0.141  Sum_probs=88.0

Q ss_pred             hcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccc
Q 048829          719 LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQ  798 (976)
Q Consensus       719 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~  798 (976)
                      +..+++|++|++++|.. ..++. +..+++|++|++++| .++.++. +..+++|+.|++++|. +..++. +..+++|+
T Consensus       151 ~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~  224 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLN  224 (347)
T ss_dssp             GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCC
T ss_pred             hhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCC
Confidence            34444444444444322 22211 334444444444444 2222222 3334444444444443 222211 34444444


Q ss_pred             eEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCc
Q 048829          799 QLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLP  878 (976)
Q Consensus       799 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l  878 (976)
                      +|++++|.+..++....+++|++|++++|.+...      ..+..+++|++|++++|  .+..++.          +..+
T Consensus       225 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n--~l~~~~~----------~~~l  286 (347)
T 4fmz_A          225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSN--QISDISV----------LNNL  286 (347)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSS--CCCCCGG----------GGGC
T ss_pred             EEEccCCccCCCcchhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCC--ccCCChh----------hcCC
Confidence            4444444444444433444555555555544332      12445556666666552  2222221          2355


Q ss_pred             cccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCCc
Q 048829          879 ASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCP  937 (976)
Q Consensus       879 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~  937 (976)
                      ++|+.|++++|+.-...|..+..+++|++|++++|+ ++.+++....++|++|++++|+
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV  344 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence            666666666643323333455666666666666654 4444332223566666666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=6.4e-24  Score=243.66  Aligned_cols=295  Identities=18%  Similarity=0.211  Sum_probs=212.8

Q ss_pred             cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCccc
Q 048829          533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLE  610 (976)
Q Consensus       533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~  610 (976)
                      +++++.|++++|......+..+..+++|++|++++ +.++.++.  ...+++|++|++++|. ++.++...+ ..+++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~  107 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLT  107 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCC
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCC-CccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCC
Confidence            36778888888776666666778888888888888 46665533  3447788888888887 677776554 5678888


Q ss_pred             EEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccc
Q 048829          611 ILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATL  689 (976)
Q Consensus       611 ~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  689 (976)
                      +|++++|......+.. ..+++|+.|++++|......  +..+.                                    
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~------------------------------------  149 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS--HRAFS------------------------------------  149 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC--TTSST------------------------------------
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCccceeC--hhhcc------------------------------------
Confidence            8888877543332222 44556777777766421111  11111                                    


Q ss_pred             ccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCC
Q 048829          690 ESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLP  769 (976)
Q Consensus       690 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  769 (976)
                            .+ ++|++|++++|.+.+..+..+..+++|+.|++++|......+..+..+++|++|++++|+.++.+|.....
T Consensus       150 ------~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  222 (477)
T 2id5_A          150 ------GL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY  222 (477)
T ss_dssp             ------TC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred             ------CC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence                  11 67888888888887777777888899999999987655555667888899999999998888888877777


Q ss_pred             CCCccEEEecCCcCcccCC-CcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCc
Q 048829          770 CAKLRRLEIYDCKRLEALP-KGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS  846 (976)
Q Consensus       770 ~~~L~~L~l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  846 (976)
                      ..+|++|++++|. ++.+| ..+..+++|+.|++++|.+..++..  ..+++|+.|++++|.+....+    ..+.++++
T Consensus       223 ~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~  297 (477)
T 2id5_A          223 GLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNY  297 (477)
T ss_dssp             TCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTT
T ss_pred             CccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH----HHhcCccc
Confidence            7789999999887 55666 4678888999999998888877654  345788888888888777655    56788888


Q ss_pred             ccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccC
Q 048829          847 LRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFP  890 (976)
Q Consensus       847 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  890 (976)
                      |+.|++++  +.+..++...        |..+++|+.|++++++
T Consensus       298 L~~L~L~~--N~l~~~~~~~--------~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          298 LRVLNVSG--NQLTTLEESV--------FHSVGNLETLILDSNP  331 (477)
T ss_dssp             CCEEECCS--SCCSCCCGGG--------BSCGGGCCEEECCSSC
T ss_pred             CCEEECCC--CcCceeCHhH--------cCCCcccCEEEccCCC
Confidence            88888888  3556666543        3577888888888843

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=7.1e-24  Score=232.43  Aligned_cols=301  Identities=14%  Similarity=0.131  Sum_probs=166.4

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      ++|+.|++++|... .++ .+..+++|++|++++| .++.++....+++|++|++++|. ++.++.  + ..+++|++|+
T Consensus        44 ~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~--~-~~l~~L~~L~  116 (347)
T 4fmz_A           44 ESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA--L-QNLTNLRELY  116 (347)
T ss_dssp             TTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG--G-TTCTTCSEEE
T ss_pred             ccccEEEEeCCccc-cch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH--H-cCCCcCCEEE
Confidence            45555555554332 222 2445555555555552 44444444445555555555554 444432  1 3455555555


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE  693 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  693 (976)
                      +++|. +..++....+++|+.|++++|..++.+  +. +..+                                      
T Consensus       117 l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l--------------------------------------  154 (347)
T 4fmz_A          117 LNEDN-ISDISPLANLTKMYSLNLGANHNLSDL--SP-LSNM--------------------------------------  154 (347)
T ss_dssp             CTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCC--GG-GTTC--------------------------------------
T ss_pred             CcCCc-ccCchhhccCCceeEEECCCCCCcccc--cc-hhhC--------------------------------------
Confidence            55543 223333334444555555555433322  10 1110                                      


Q ss_pred             ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829          694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL  773 (976)
Q Consensus       694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L  773 (976)
                           ++|++|++++|...+..+  +..+++|++|++++|. ++.++. +..+++|++|++++|. +..++. +..+++|
T Consensus       155 -----~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L  223 (347)
T 4fmz_A          155 -----TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRL  223 (347)
T ss_dssp             -----TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTC
T ss_pred             -----CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC-CCCCch-hhcCCcC
Confidence                 455666666655444333  5566666666666653 333433 5566677777776663 333332 4455667


Q ss_pred             cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829          774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR  853 (976)
Q Consensus       774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  853 (976)
                      ++|++++|. +..++. +..+++|++|++++|.+..++....+++|++|++++|.+....      .+..+++|+.|+++
T Consensus       224 ~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          224 NSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLN  295 (347)
T ss_dssp             CEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECC
T ss_pred             CEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECc
Confidence            777777666 334433 6666777777777776666655556667777777777655531      35677777778777


Q ss_pred             ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829          854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~  914 (976)
                      +| ......+...         ..+++|+.|++++| .++.++. +..+++|++|++++|+
T Consensus       296 ~n-~l~~~~~~~l---------~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          296 NN-QLGNEDMEVI---------GGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             SS-CCCGGGHHHH---------HTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             CC-cCCCcChhHh---------hccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence            73 2222222222         46778888888884 4666664 7778888888888865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=4.3e-23  Score=232.89  Aligned_cols=313  Identities=16%  Similarity=0.170  Sum_probs=170.4

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      ++|+.|++++|... .+| .+..+++|++|++++ +.++.++ ...+++|++|++++|. ++.++  +  ..+++|++|+
T Consensus        42 ~~L~~L~Ls~n~l~-~~~-~l~~l~~L~~L~Ls~-n~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~--~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTS-NNITTLD-LSQNTNLTYLACDSNK-LTNLD--V--TPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCC-CCT-TGGGCTTCSEEECCS-SCCSCCC-CTTCTTCSEEECCSSC-CSCCC--C--TTCTTCCEEE
T ss_pred             CCCCEEEccCCCcc-cCh-hhcccCCCCEEEccC-CcCCeEc-cccCCCCCEEECcCCC-Cceee--c--CCCCcCCEEE
Confidence            45555555554332 233 345555555555555 3444443 3345555555555555 44443  1  3455555555


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE  693 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  693 (976)
                      +++|. ++.++ ...+++|+.|++++|. ++.+  +  +..       .++|+.|+++++..+..+ +            
T Consensus       113 L~~N~-l~~l~-~~~l~~L~~L~l~~N~-l~~l--~--l~~-------l~~L~~L~l~~n~~~~~~-~------------  165 (457)
T 3bz5_A          113 CDTNK-LTKLD-VSQNPLLTYLNCARNT-LTEI--D--VSH-------NTQLTELDCHLNKKITKL-D------------  165 (457)
T ss_dssp             CCSSC-CSCCC-CTTCTTCCEEECTTSC-CSCC--C--CTT-------CTTCCEEECTTCSCCCCC-C------------
T ss_pred             CCCCc-CCeec-CCCCCcCCEEECCCCc-ccee--c--ccc-------CCcCCEEECCCCCccccc-c------------
Confidence            55552 22232 2334455555555553 2212  1  111       134555555555433321 1            


Q ss_pred             ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829          694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL  773 (976)
Q Consensus       694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L  773 (976)
                      +..+ ++|++|++++|.+.+ +|  +..+++|++|++++|. ++.+  .+..+++|++|++++| .++.+|  +..+++|
T Consensus       166 ~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L  235 (457)
T 3bz5_A          166 VTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQL  235 (457)
T ss_dssp             CTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred             cccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCC-cccccC--ccccCCC
Confidence            1111 677888888877665 33  6777888888888754 3444  3667788888888887 445566  5667788


Q ss_pred             cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829          774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR  853 (976)
Q Consensus       774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  853 (976)
                      +.|++++|. ++.+|  ++.+++|+.|+++++.            |+.|++++|......+      +..+++|+.|+++
T Consensus       236 ~~L~l~~N~-l~~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~------~~~l~~L~~L~Ls  294 (457)
T 3bz5_A          236 TYFDCSVNP-LTELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ------AEGCRKIKELDVT  294 (457)
T ss_dssp             SEEECCSSC-CSCCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE------CTTCTTCCCCCCT
T ss_pred             CEEEeeCCc-CCCcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc------ccccccCCEEECC
Confidence            888888887 44444  4566777777766543            4445555555444333      2455666666666


Q ss_pred             ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCcccc
Q 048829          854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYF  919 (976)
Q Consensus       854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i  919 (976)
                      + +...+.+|......+. ..+...++|+.|++++ +.++.++  +..+++|+.|++++ ++++.+
T Consensus       295 ~-n~~l~~l~~~~~~L~~-L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l~~l  354 (457)
T 3bz5_A          295 H-NTQLYLLDCQAAGITE-LDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHIQDF  354 (457)
T ss_dssp             T-CTTCCEEECTTCCCSC-CCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCCCBC
T ss_pred             C-CcccceeccCCCcceE-echhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCCCCc
Confidence            6 3444444432211111 1134556777777777 5666663  66777777777777 444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=5.5e-23  Score=235.87  Aligned_cols=305  Identities=18%  Similarity=0.130  Sum_probs=230.0

Q ss_pred             CcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCccc
Q 048829          546 GLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYI  623 (976)
Q Consensus       546 ~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~  623 (976)
                      .++.+|..+  .++++.|++++ +.++.++.  ...+++|++|++++|. ++.++...+ ..+++|++|++++|. ++.+
T Consensus        22 ~l~~ip~~~--~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~   95 (477)
T 2id5_A           22 RFVAVPEGI--PTETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAF-NNLFNLRTLGLRSNR-LKLI   95 (477)
T ss_dssp             CCSSCCSCC--CTTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCSC
T ss_pred             CcCcCCCCC--CCCCcEEECCC-CccceECHhHccCCCCCCEEECCCCc-cCEeChhhh-hCCccCCEEECCCCc-CCcc
Confidence            445566544  35788888888 56666643  3447788888888886 555543333 477888888888764 4445


Q ss_pred             ccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCc
Q 048829          624 AEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSV  701 (976)
Q Consensus       624 ~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L  701 (976)
                      +..  ..+++|++|++++|......  +..+.                                          .+ ++|
T Consensus        96 ~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~------------------------------------------~l-~~L  130 (477)
T 2id5_A           96 PLGVFTGLSNLTKLDISENKIVILL--DYMFQ------------------------------------------DL-YNL  130 (477)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCEEC--TTTTT------------------------------------------TC-TTC
T ss_pred             CcccccCCCCCCEEECCCCccccCC--hhHcc------------------------------------------cc-ccC
Confidence            433  34567777777777432211  11111                                          11 789


Q ss_pred             eEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCC
Q 048829          702 KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC  781 (976)
Q Consensus       702 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  781 (976)
                      ++|++++|.+.+..+..+.++++|++|++++|......+..+.++++|+.|++++|......+..+..+++|+.|++++|
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            99999999998888889999999999999997554444567889999999999999554444456778999999999999


Q ss_pred             cCcccCCCcCCCCCccceEEEeCCCCCCccc--CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCC
Q 048829          782 KRLEALPKGLHNLTSLQQLTIIGGELPSLEE--DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDM  859 (976)
Q Consensus       782 ~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~  859 (976)
                      ..++.+|.......+|++|++++|.+..++.  ...+++|+.|++++|.+.....    ..+.++++|+.|++++ +...
T Consensus       211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~-n~l~  285 (477)
T 2id5_A          211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVG-GQLA  285 (477)
T ss_dssp             TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCS-SCCS
T ss_pred             ccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCC-Cccc
Confidence            9999998888777899999999999998874  3567899999999999876655    5688999999999999 3333


Q ss_pred             ccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCc
Q 048829          860 VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKL  916 (976)
Q Consensus       860 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l  916 (976)
                      ...|..+         ..+++|+.|++++ +.++.++. .+..+++|++|++++|+..
T Consensus       286 ~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          286 VVEPYAF---------RGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             EECTTTB---------TTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             eECHHHh---------cCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            3334433         6889999999999 58888876 5688999999999997643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=3.1e-23  Score=231.11  Aligned_cols=211  Identities=14%  Similarity=0.094  Sum_probs=160.9

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|.+.+..+..+..+++|++|++++|. ++.++  +..+++|+.|++++| .++.++    ..++|++|++
T Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n-~l~~~~----~~~~L~~L~l  212 (390)
T 3o6n_A          141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDA  212 (390)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSS-CCSEEE----CCSSCSEEEC
T ss_pred             CCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccc-cccccC----CCCcceEEEC
Confidence            567777777777776667778888888888888854 33332  456788888888887 444443    2247888888


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD  858 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~  858 (976)
                      ++|. +..+|..  ..++|+.|++++|.+...+....+++|++|++++|.+....+    ..+.++++|++|++++  +.
T Consensus       213 ~~n~-l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~--n~  283 (390)
T 3o6n_A          213 SHNS-INVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISN--NR  283 (390)
T ss_dssp             CSSC-CCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCS--SC
T ss_pred             CCCe-eeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCC--Cc
Confidence            8887 4555543  357888888888888887666677889999999998877655    5688899999999998  35


Q ss_pred             CccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCCcc
Q 048829          859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPL  938 (976)
Q Consensus       859 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~~  938 (976)
                      +..++...         ..+++|+.|++++ +.++.+|..+..+++|++|++++|+ ++.++.. ..++|++|++++|+-
T Consensus       284 l~~~~~~~---------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          284 LVALNLYG---------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHNDW  351 (390)
T ss_dssp             CCEEECSS---------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSSCE
T ss_pred             CcccCccc---------CCCCCCCEEECCC-CcceecCccccccCcCCEEECCCCc-cceeCch-hhccCCEEEcCCCCc
Confidence            66666554         4789999999999 5888999888889999999999954 6777643 346899999999863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.4e-22  Score=225.76  Aligned_cols=292  Identities=16%  Similarity=0.186  Sum_probs=216.4

Q ss_pred             cccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCC
Q 048829          495 GLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSF  574 (976)
Q Consensus       495 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l  574 (976)
                      ..+..+++|+.|+++++. ++.++...    +..+    ++|++|++++|......|..+..+++|++|++++ +.++.+
T Consensus        63 ~~~~~l~~L~~L~L~~n~-i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l  132 (390)
T 3o6n_A           63 ALLDSFRQVELLNLNDLQ-IEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSL  132 (390)
T ss_dssp             HHHHHCCCCSEEECTTSC-CCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred             hHhcccccCcEEECCCCc-ccccChhh----ccCC----CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC-CccCcC
Confidence            346778888888888864 44443321    2222    7889999998887766677788899999999998 577777


Q ss_pred             CCc--CCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEeeccCcCcccccccccc
Q 048829          575 PEV--ALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGI  652 (976)
Q Consensus       575 ~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  652 (976)
                      |..  ..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++ ...+++|+.|++++|. ++.+..+   
T Consensus       133 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~l~~L~~L~l~~n~-l~~~~~~---  204 (390)
T 3o6n_A          133 PRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL-LSTLAIP---  204 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC-GGGCTTCSEEECCSSC-CSEEECC---
T ss_pred             CHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCccc-cccccccceeeccccc-ccccCCC---
Confidence            763  448889999999987 666655444 578899999998875 33333 2445678999988874 3333111   


Q ss_pred             ccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeec
Q 048829          653 QSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISN  732 (976)
Q Consensus       653 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~  732 (976)
                                +.|+.|+++++.--.  ++.             ..+++|+.|++++|.+.+.  ..+..+++|++|++++
T Consensus       205 ----------~~L~~L~l~~n~l~~--~~~-------------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~  257 (390)
T 3o6n_A          205 ----------IAVEELDASHNSINV--VRG-------------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY  257 (390)
T ss_dssp             ----------SSCSEEECCSSCCCE--EEC-------------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             ----------CcceEEECCCCeeee--ccc-------------cccccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence                      458888888764321  111             2237899999999987764  5688899999999999


Q ss_pred             CCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCccc
Q 048829          733 CENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE  812 (976)
Q Consensus       733 c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~  812 (976)
                      |......|..+..+++|++|++++| .++.+|..+..+++|++|++++|. +..+|..+..+++|++|++++|.+..++ 
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~~~-  334 (390)
T 3o6n_A          258 NELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK-  334 (390)
T ss_dssp             SCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred             CcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccceeC-
Confidence            7666666888888999999999998 567777777788899999999997 6678878888899999999999988876 


Q ss_pred             CCCCCccceeeecCCCCccchh
Q 048829          813 DGLPTNLHSLRIEGNMGIWKSM  834 (976)
Q Consensus       813 ~~~~~~L~~L~l~~~~~~~~~~  834 (976)
                      ...+++|+.|++++|+......
T Consensus       335 ~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          335 LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             CCTTCCCSEEECCSSCEEHHHH
T ss_pred             chhhccCCEEEcCCCCccchhH
Confidence            4556788888888888766544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.5e-22  Score=238.10  Aligned_cols=210  Identities=14%  Similarity=0.102  Sum_probs=146.0

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|.+.+..|..+..+++|++|++++|. ++.++  +..+++|+.|++++| .+..++    ..++|+.|++
T Consensus       147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n-~l~~l~----~~~~L~~L~l  218 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDA  218 (597)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSS-CCSEEE----CCTTCSEEEC
T ss_pred             CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccC-cccccc----CCchhheeec
Confidence            566777777776666666677777777777777753 33332  445677777777777 344332    2346777888


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD  858 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~  858 (976)
                      ++|. +..+|..+  .++|+.|++++|.+...+....+++|+.|++++|.+....+    ..+.++++|+.|++++  +.
T Consensus       219 s~n~-l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~--N~  289 (597)
T 3oja_B          219 SHNS-INVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISN--NR  289 (597)
T ss_dssp             CSSC-CCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECTT--SC
T ss_pred             cCCc-cccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH----HHhcCccCCCEEECCC--CC
Confidence            7776 44444333  35778888888777776655667788888888887776655    4577888888888888  35


Q ss_pred             CccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCCc
Q 048829          859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCP  937 (976)
Q Consensus       859 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~  937 (976)
                      +..+|...         ..+++|+.|++++ +.+..+|..+..+++|++|++++|+ ++.++... .++|+.|++++|+
T Consensus       290 l~~l~~~~---------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~L~~L~l~~N~  356 (597)
T 3oja_B          290 LVALNLYG---------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS-IVTLKLST-HHTLKNLTLSHND  356 (597)
T ss_dssp             CCEEECSS---------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT-TCCCSEEECCSSC
T ss_pred             CCCCCccc---------ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCCC-CCCcChhh-cCCCCEEEeeCCC
Confidence            55566554         4678888888888 5677888888888888888888854 56665433 3588888888876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=6.8e-22  Score=232.56  Aligned_cols=292  Identities=17%  Similarity=0.191  Sum_probs=221.9

Q ss_pred             cccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCC
Q 048829          495 GLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSF  574 (976)
Q Consensus       495 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l  574 (976)
                      ..+..+++|+.|++++|. +..++...    +..+    ++|+.|++++|......|..+..+++|++|++++ +.++.+
T Consensus        69 ~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l  138 (597)
T 3oja_B           69 ALLDSFRQVELLNLNDLQ-IEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSL  138 (597)
T ss_dssp             HHHHHCCCCSEEECTTSC-CCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred             HHHccCCCCcEEECCCCC-CCCCChHH----hcCC----CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC-CCCCCC
Confidence            456778888888888864 55444321    2222    7899999999887776666778899999999998 577777


Q ss_pred             CCc--CCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEeeccCcCcccccccccc
Q 048829          575 PEV--ALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGI  652 (976)
Q Consensus       575 ~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  652 (976)
                      |..  ..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++ ...+++|+.|++++|. ++.+..+   
T Consensus       139 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~l~~L~~L~l~~n~-l~~l~~~---  210 (597)
T 3oja_B          139 PRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL-LSTLAIP---  210 (597)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCC-GGGCTTCSEEECCSSC-CSEEECC---
T ss_pred             CHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcC-hhhhhhhhhhhcccCc-cccccCC---
Confidence            763  458899999999987 566655444 578899999998874 34443 2445679999998874 3333111   


Q ss_pred             ccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeec
Q 048829          653 QSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISN  732 (976)
Q Consensus       653 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~  732 (976)
                                +.|+.|+++++.-- . +             ....+++|+.|++++|.+.+  +..+..+++|++|++++
T Consensus       211 ----------~~L~~L~ls~n~l~-~-~-------------~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~  263 (597)
T 3oja_B          211 ----------IAVEELDASHNSIN-V-V-------------RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY  263 (597)
T ss_dssp             ----------TTCSEEECCSSCCC-E-E-------------ECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred             ----------chhheeeccCCccc-c-c-------------ccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCC
Confidence                      45888888886422 1 1             11234789999999998876  36788999999999999


Q ss_pred             CCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCccc
Q 048829          733 CENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE  812 (976)
Q Consensus       733 c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~  812 (976)
                      |...+..|..+..+++|++|++++| .++.+|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.+..++ 
T Consensus       264 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~~~~-  340 (597)
T 3oja_B          264 NELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK-  340 (597)
T ss_dssp             SCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred             CccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCCCCcC-
Confidence            8776677888999999999999998 667788877788999999999998 5678888889999999999999998876 


Q ss_pred             CCCCCccceeeecCCCCccchh
Q 048829          813 DGLPTNLHSLRIEGNMGIWKSM  834 (976)
Q Consensus       813 ~~~~~~L~~L~l~~~~~~~~~~  834 (976)
                      ...+++|+.|++++|+......
T Consensus       341 ~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          341 LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             CCTTCCCSEEECCSSCEEHHHH
T ss_pred             hhhcCCCCEEEeeCCCCCChhH
Confidence            4556789999999998776544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=2.1e-21  Score=210.93  Aligned_cols=292  Identities=12%  Similarity=0.119  Sum_probs=186.6

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEe
Q 048829          558 SSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLD  636 (976)
Q Consensus       558 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~  636 (976)
                      .+++.+++++ +.++.+|.. .+++|++|++++|. ++.++...+ ..+++|++|++++|......+.. ..+++|++|+
T Consensus        33 c~l~~l~~~~-~~l~~ip~~-~~~~l~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSD-LGLKAVPKE-ISPDTTLLDLQNND-ISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCS-SCCSSCCSC-CCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCC-CCccccCCC-CCCCCeEEECCCCc-CCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            3688888887 567777743 35788888888887 666654444 57888888888887533222322 4456677777


Q ss_pred             eccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh
Q 048829          637 IQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA  716 (976)
Q Consensus       637 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  716 (976)
                      +++|. ++.+  |..                                             ++++|++|++++|.+.+..+
T Consensus       109 L~~n~-l~~l--~~~---------------------------------------------~~~~L~~L~l~~n~i~~~~~  140 (332)
T 2ft3_A          109 ISKNH-LVEI--PPN---------------------------------------------LPSSLVELRIHDNRIRKVPK  140 (332)
T ss_dssp             CCSSC-CCSC--CSS---------------------------------------------CCTTCCEEECCSSCCCCCCS
T ss_pred             CCCCc-CCcc--Ccc---------------------------------------------ccccCCEEECCCCccCccCH
Confidence            77763 2222  111                                             11578888888888776666


Q ss_pred             hhhcCCCCCceEEeecCCCcc--cccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCC
Q 048829          717 ERLDNNTSLETINISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNL  794 (976)
Q Consensus       717 ~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l  794 (976)
                      ..+..+++|++|++++|....  ..|..+..+ +|++|++++| .++.+|....  ++|++|++++|......+..+..+
T Consensus       141 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l  216 (332)
T 2ft3_A          141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY  216 (332)
T ss_dssp             GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred             hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCC
Confidence            678888888888888865532  446666666 8888888888 4666776544  688888888887555555678888


Q ss_pred             CccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccC
Q 048829          795 TSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLG  872 (976)
Q Consensus       795 ~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~  872 (976)
                      ++|++|++++|.+..++..  ..+++|++|++++|.+... +    ..+..+++|++|++++  +.+..++......  .
T Consensus       217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p----~~l~~l~~L~~L~l~~--N~l~~~~~~~~~~--~  287 (332)
T 2ft3_A          217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-P----AGLPDLKLLQVVYLHT--NNITKVGVNDFCP--V  287 (332)
T ss_dssp             TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-C----TTGGGCTTCCEEECCS--SCCCBCCTTSSSC--S
T ss_pred             CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-C----hhhhcCccCCEEECCC--CCCCccChhHccc--c
Confidence            8888888888888877653  3456777777777766532 2    3466777777777777  3455554432100  0


Q ss_pred             CCCCCccccceeeccccCCC--ccccccccCCCCCCeEeecCCC
Q 048829          873 TTLPLPASLTSLSIAFFPNL--ESLSSSIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       873 ~~~~~l~~L~~L~l~~~~~l--~~l~~~l~~l~~L~~L~l~~c~  914 (976)
                      ......++|+.|++++++..  +..|..+..+++|+.+++++|.
T Consensus       288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            00011456677777775432  2233456667777777776654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=5.5e-21  Score=207.51  Aligned_cols=292  Identities=13%  Similarity=0.177  Sum_probs=192.7

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEe
Q 048829          558 SSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLD  636 (976)
Q Consensus       558 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~  636 (976)
                      .+++.+++++ ..++.+|. ..++++++|++++|. ++.++...+ ..+++|++|++++|......+.. ..+++|++|+
T Consensus        31 c~l~~l~~~~-~~l~~lp~-~~~~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSD-LGLEKVPK-DLPPDTALLDLQNNK-ITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTT-SCCCSCCC-SCCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecC-CCccccCc-cCCCCCeEEECCCCc-CCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            4678888877 56777764 345788888888887 666665444 57888888888887543332322 4556777777


Q ss_pred             eccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh
Q 048829          637 IQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA  716 (976)
Q Consensus       637 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  716 (976)
                      +++|. ++.+  |..                                             ++++|++|++++|.+.+..+
T Consensus       107 Ls~n~-l~~l--~~~---------------------------------------------~~~~L~~L~l~~n~l~~~~~  138 (330)
T 1xku_A          107 LSKNQ-LKEL--PEK---------------------------------------------MPKTLQELRVHENEITKVRK  138 (330)
T ss_dssp             CCSSC-CSBC--CSS---------------------------------------------CCTTCCEEECCSSCCCBBCH
T ss_pred             CCCCc-CCcc--Chh---------------------------------------------hcccccEEECCCCcccccCH
Confidence            77764 2222  111                                             11678999999998888888


Q ss_pred             hhhcCCCCCceEEeecCCCcc--cccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCC
Q 048829          717 ERLDNNTSLETINISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNL  794 (976)
Q Consensus       717 ~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l  794 (976)
                      ..+.++++|++|++++|....  ..+..+.++++|++|++++| .++.+|....  ++|++|++++|......|..+..+
T Consensus       139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l  215 (330)
T 1xku_A          139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL  215 (330)
T ss_dssp             HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTC
T ss_pred             hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCC
Confidence            889999999999999976543  45778888999999999999 5667776554  799999999998655557788999


Q ss_pred             CccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccC
Q 048829          795 TSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLG  872 (976)
Q Consensus       795 ~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~  872 (976)
                      ++|++|++++|.+..++..  ..+++|++|++++|.+... +    ..+..+++|++|++++  +.+..++......  .
T Consensus       216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p----~~l~~l~~L~~L~l~~--N~i~~~~~~~f~~--~  286 (330)
T 1xku_A          216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-P----GGLADHKYIQVVYLHN--NNISAIGSNDFCP--P  286 (330)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-C----TTTTTCSSCCEEECCS--SCCCCCCTTSSSC--S
T ss_pred             CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-C----hhhccCCCcCEEECCC--CcCCccChhhcCC--c
Confidence            9999999999988877653  2346677777777765522 2    2456667777777776  2444444432100  0


Q ss_pred             CCCCCccccceeeccccCCCc-cc-cccccCCCCCCeEeecCC
Q 048829          873 TTLPLPASLTSLSIAFFPNLE-SL-SSSIVDLQNLTKLTLYDC  913 (976)
Q Consensus       873 ~~~~~l~~L~~L~l~~~~~l~-~l-~~~l~~l~~L~~L~l~~c  913 (976)
                      ......++|+.|++++++... .+ |..+..+++|+.+++++|
T Consensus       287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            000123556666666643211 12 235555566666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=6.6e-21  Score=206.84  Aligned_cols=265  Identities=14%  Similarity=0.142  Sum_probs=151.0

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI  611 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~  611 (976)
                      ++|+.|++++|......+..+..+++|++|++++ +.++.+..  ...+++|++|++++|. ++.+|...    .++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM----PKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC----CTTCCE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh----cccccE
Confidence            6777777777765554454677777777777777 45555522  3446777777777776 66666543    256777


Q ss_pred             EEEecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccc
Q 048829          612 LKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATL  689 (976)
Q Consensus       612 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  689 (976)
                      |++++|.. +.++..  ..+++|+.|++++|..-..-..+..+..+                                  
T Consensus       126 L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l----------------------------------  170 (330)
T 1xku_A          126 LRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM----------------------------------  170 (330)
T ss_dssp             EECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC----------------------------------
T ss_pred             EECCCCcc-cccCHhHhcCCccccEEECCCCcCCccCcChhhccCC----------------------------------
Confidence            77777643 333321  44556777777666432110001111111                                  


Q ss_pred             ccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCC
Q 048829          690 ESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLP  769 (976)
Q Consensus       690 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  769 (976)
                               ++|++|++++|.+.. +|..+.  ++|++|++++|......|..+..+++|++|++++|......+..+..
T Consensus       171 ---------~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          171 ---------KKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             ---------TTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             ---------CCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence                     456666666655443 332222  56667777665444334566666777777777776433322334555


Q ss_pred             CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC--------CCccceeeecCCCCccchhhhcCCcc
Q 048829          770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL--------PTNLHSLRIEGNMGIWKSMIERGRGF  841 (976)
Q Consensus       770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~  841 (976)
                      +++|++|++++|. +..+|..+..+++|++|++++|.|+.++...+        ...++.+++++|+........  ..+
T Consensus       239 l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f  315 (330)
T 1xku_A          239 TPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STF  315 (330)
T ss_dssp             STTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGG
T ss_pred             CCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc--ccc
Confidence            6677777777775 45666667777777777777777776655433        245666666666654422221  345


Q ss_pred             cccCcccEEEEec
Q 048829          842 HRFSSLRYLLIRG  854 (976)
Q Consensus       842 ~~l~~L~~L~l~~  854 (976)
                      ..+++++.+++++
T Consensus       316 ~~~~~l~~l~L~~  328 (330)
T 1xku_A          316 RCVYVRAAVQLGN  328 (330)
T ss_dssp             TTCCCGGGEEC--
T ss_pred             ccccceeEEEecc
Confidence            5566666666655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=2.8e-21  Score=208.54  Aligned_cols=197  Identities=19%  Similarity=0.306  Sum_probs=127.8

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCC---------
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLP---------  769 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---------  769 (976)
                      ++|++|++++|.+. .+|..++.+++|++|++++|. ++.+|..+..+++|++|++++|..++.+|..+..         
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            56666667666665 566667777777777777753 3466777777777777777777677777665443         


Q ss_pred             CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC-CCCCccceeeecCCCCccchhhhcCCcccccCccc
Q 048829          770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR  848 (976)
Q Consensus       770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  848 (976)
                      +++|++|++++|. ++.+|..++.+++|++|++++|.+..++.. +.+++|++|++++|......+    ..+.++++|+
T Consensus       182 l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~  256 (328)
T 4fcg_A          182 LVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLK  256 (328)
T ss_dssp             STTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCC
T ss_pred             CCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH----HHhcCCCCCC
Confidence            6777777777776 447777777777777777777777766532 334566666666666555544    3456666666


Q ss_pred             EEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecC
Q 048829          849 YLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYD  912 (976)
Q Consensus       849 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~  912 (976)
                      +|++++ |+..+.+|...         ..+++|+.|++++|+.++.+|.++..+++|+.+++..
T Consensus       257 ~L~L~~-n~~~~~~p~~~---------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          257 RLILKD-CSNLLTLPLDI---------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             EEECTT-CTTCCBCCTTG---------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             EEECCC-CCchhhcchhh---------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            666666 34555555544         3566666666666666666666666666666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=5.7e-22  Score=212.67  Aligned_cols=225  Identities=13%  Similarity=0.082  Sum_probs=173.9

Q ss_pred             CCceEEEEcC-CCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829          699 PSVKVLDVYG-CPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  777 (976)
                      ++|++|++++ |.+.+.+|..++.+++|++|++++|...+.+|..+..+++|++|++++|...+.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            6788888885 777778888888888888888888766667788888888888888888865557777777788888888


Q ss_pred             ecCCcCcccCCCcCCCCC-ccceEEEeCCCCCC-cccC-CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          778 IYDCKRLEALPKGLHNLT-SLQQLTIIGGELPS-LEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       778 l~~c~~l~~~~~~l~~l~-~L~~L~l~~~~l~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      +++|...+.+|..+..++ +|++|++++|.+.. ++.. ..++ |++|++++|.+....+    ..+..+++|++|++++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG----GGCCTTSCCSEEECCS
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC----HHHhcCCCCCEEECCC
Confidence            888886667888888887 88888888888773 2221 2223 8888898888776655    5688899999999998


Q ss_pred             cCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeec
Q 048829          855 CDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIY  934 (976)
Q Consensus       855 c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~  934 (976)
                       +...+.++. .         ..+++|++|++++|..-+.+|..+..+++|++|++++|+..+.+|...-.++|+.+++.
T Consensus       231 -N~l~~~~~~-~---------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~  299 (313)
T 1ogq_A          231 -NSLAFDLGK-V---------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             -SEECCBGGG-C---------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             -CceeeecCc-c---------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence             333333333 2         47799999999995444478888999999999999997766688876556789999999


Q ss_pred             CCcch
Q 048829          935 RCPLI  939 (976)
Q Consensus       935 ~c~~l  939 (976)
                      +++.+
T Consensus       300 ~N~~l  304 (313)
T 1ogq_A          300 NNKCL  304 (313)
T ss_dssp             SSSEE
T ss_pred             CCCCc
Confidence            98854

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=6.7e-21  Score=205.49  Aligned_cols=227  Identities=21%  Similarity=0.329  Sum_probs=170.3

Q ss_pred             cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829          533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI  611 (976)
Q Consensus       533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~  611 (976)
                      .++++.|++++|... .+|..+..+++|++|++++ +.++.+|. ...+++|++|++++|. ++.+|..+.  .+++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~--~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARNP-LRALPASIA--SLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGG--GCTTCCE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCCc-cccCcHHHh--cCcCCCE
Confidence            368888888887654 7777788888899999988 46667775 4557888888888887 667776554  7888888


Q ss_pred             EEEecCCCCccccccc----------CCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCcccccc
Q 048829          612 LKIWDCHSLTYIAEVQ----------LPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFS  681 (976)
Q Consensus       612 L~l~~~~~l~~~~~~~----------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  681 (976)
                      |++++|+....+|..-          .+++|++|++++|. ++.+  |..+..+                          
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l--p~~l~~l--------------------------  205 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL--PASIANL--------------------------  205 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCC--CGGGGGC--------------------------
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcc--hHhhcCC--------------------------
Confidence            8888887777666431          14556666666653 2222  3222211                          


Q ss_pred             CCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCC
Q 048829          682 KNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLE  761 (976)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~  761 (976)
                                       ++|++|++++|.+.+ +|..+..+++|++|++++|+..+.+|..+.++++|++|++++|...+
T Consensus       206 -----------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          206 -----------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             -----------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             -----------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence                             678888888887764 55568888888888888888888888888888888888888888888


Q ss_pred             ccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcc
Q 048829          762 SFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLE  811 (976)
Q Consensus       762 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~  811 (976)
                      .+|..+..+++|++|++++|+.++.+|..++++++|+.+++..+.+..+.
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence            88888888888888888888888888888888888888888776555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=1.4e-21  Score=209.71  Aligned_cols=251  Identities=15%  Similarity=0.094  Sum_probs=187.4

Q ss_pred             ccccEEEeeccCCcc--cCccccCCCCCccEEEeecCCCCC-CCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcc
Q 048829          534 CRLEYLRLRYCEGLV--KLPQSSLSLSSLKEIEIYKCSSLV-SFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSL  609 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~-~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L  609 (976)
                      .+++.|++++|...+  .+|..+..+++|++|++++++.+. .+|. ...+++|++|++++|...+.+|..+.  .+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCC
Confidence            478888888887777  788888888888999888645554 4553 44578888888888874446665543  77888


Q ss_pred             cEEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccc
Q 048829          610 EILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPAT  688 (976)
Q Consensus       610 ~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  688 (976)
                      ++|++++|.....++.. ..+++|++|++++|...+.+  |..+.                                   
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~-----------------------------------  170 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYG-----------------------------------  170 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGG-----------------------------------
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC--CHHHh-----------------------------------
Confidence            88888887544344433 45566777777777543233  32222                                   


Q ss_pred             cccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCC
Q 048829          689 LESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL  768 (976)
Q Consensus       689 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~  768 (976)
                             .++++|++|++++|.+.+.+|..+..++ |++|++++|......|..+..+++|++|++++|.....+|. +.
T Consensus       171 -------~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~  241 (313)
T 1ogq_A          171 -------SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG  241 (313)
T ss_dssp             -------CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC
T ss_pred             -------hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc
Confidence                   2224789999999988888888888887 99999999876667788888899999999999965444544 66


Q ss_pred             CCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCC-CcccCCCCCccceeeecCCCCccc
Q 048829          769 PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELP-SLEEDGLPTNLHSLRIEGNMGIWK  832 (976)
Q Consensus       769 ~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~~~L~~L~l~~~~~~~~  832 (976)
                      .+++|++|++++|...+.+|..+..+++|++|++++|.+. .+|..+.+++|+.+++++|+....
T Consensus       242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence            6789999999999977788888999999999999998887 566666678888888888875543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=2.3e-20  Score=202.61  Aligned_cols=218  Identities=16%  Similarity=0.195  Sum_probs=131.8

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~  777 (976)
                      ++|++|++++|.+.+..|..+.++++|++|++++| .++.+|..+.  ++|++|++++| .++.+|. .+..+++|++|+
T Consensus        78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEE
T ss_pred             CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEE
Confidence            55666666666666655666666777777777664 3445554443  66777777766 3444443 245566777777


Q ss_pred             ecCCcCc--ccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEecc
Q 048829          778 IYDCKRL--EALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGC  855 (976)
Q Consensus       778 l~~c~~l--~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  855 (976)
                      +++|...  +..|..+..+ +|++|++++|.+..++.. .+++|++|++++|.+....+    ..+.++++|++|++++ 
T Consensus       154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~L~~-  226 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHNKIQAIEL----EDLLRYSKLYRLGLGH-  226 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSSCCCCCCT----TSSTTCTTCSCCBCCS-
T ss_pred             CCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCCcCCccCH----HHhcCCCCCCEEECCC-
Confidence            7776642  2344555555 677777777666666543 33667777777776665544    3466677777777776 


Q ss_pred             CCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCC--------ccc
Q 048829          856 DDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGL--------PSS  927 (976)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~--------~~~  927 (976)
                       +.+..++...        +..+++|+.|++++ +.++.+|.++..+++|++|++++ +.++.++...+        .++
T Consensus       227 -N~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~  295 (332)
T 2ft3_A          227 -NQIRMIENGS--------LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAY  295 (332)
T ss_dssp             -SCCCCCCTTG--------GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCC
T ss_pred             -CcCCcCChhH--------hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhHcccccccccccc
Confidence             2344444322        24566777777776 46667776666777777777776 34566654332        234


Q ss_pred             ccceeecCCcc
Q 048829          928 LLQLRIYRCPL  938 (976)
Q Consensus       928 L~~L~i~~c~~  938 (976)
                      |+.|++.+||.
T Consensus       296 l~~L~l~~N~~  306 (332)
T 2ft3_A          296 YNGISLFNNPV  306 (332)
T ss_dssp             BSEEECCSSSS
T ss_pred             ccceEeecCcc
Confidence            66677777663

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=5e-22  Score=235.11  Aligned_cols=206  Identities=12%  Similarity=0.057  Sum_probs=125.7

Q ss_pred             CCceEEEEcCCCcchhhh-hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccC----------CCCCCc--cCC
Q 048829          699 PSVKVLDVYGCPKLESIA-ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGG----------CGNLES--FPE  765 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~----------~~~l~~--~~~  765 (976)
                      ++|++|++++|.+.+... ..+..+++|++|+++++.....++.....+++|++|++++          |..++.  ++.
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            577888888877544433 4467788888888875433333455556678888888884          544442  111


Q ss_pred             CCCCCCCccEEEecCCcCcccCCCcCCC-CCccceEEEe----CCCCCCcccC-------CCCCccceeeecCCC--Ccc
Q 048829          766 GGLPCAKLRRLEIYDCKRLEALPKGLHN-LTSLQQLTII----GGELPSLEED-------GLPTNLHSLRIEGNM--GIW  831 (976)
Q Consensus       766 ~~~~~~~L~~L~l~~c~~l~~~~~~l~~-l~~L~~L~l~----~~~l~~~~~~-------~~~~~L~~L~l~~~~--~~~  831 (976)
                      ....+++|++|+++.+......+..+.. +++|+.|+++    .|.++..|..       ..+++|+.|++++|.  ...
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            1233678888888555533333334433 7788888886    3566654321       226788888887655  232


Q ss_pred             chhhhcCCcccccCcccEEEEeccCCCCc-cCCCCCcccccCCCCCCccccceeeccccCCCcc--ccccccCCCCCCeE
Q 048829          832 KSMIERGRGFHRFSSLRYLLIRGCDDDMV-SFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES--LSSSIVDLQNLTKL  908 (976)
Q Consensus       832 ~~~~~~~~~~~~l~~L~~L~l~~c~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~L  908 (976)
                      ..+.   .....+++|++|++++| .... .++..         +..+++|+.|++++|+ ++.  ++..+..+++|++|
T Consensus       453 ~~~~---~~~~~~~~L~~L~L~~n-~l~~~~~~~~---------~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          453 LGLS---YIGQYSPNVRWMLLGYV-GESDEGLMEF---------SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             HHHH---HHHHSCTTCCEEEECSC-CSSHHHHHHH---------HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred             HHHH---HHHHhCccceEeeccCC-CCCHHHHHHH---------HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence            2221   22345788999999884 2111 12211         1356889999999976 433  44455678899999


Q ss_pred             eecCCCCcccc
Q 048829          909 TLYDCPKLKYF  919 (976)
Q Consensus       909 ~l~~c~~l~~i  919 (976)
                      ++++|+ ++..
T Consensus       519 ~ls~n~-it~~  528 (592)
T 3ogk_B          519 WVQGYR-ASMT  528 (592)
T ss_dssp             EEESCB-CCTT
T ss_pred             ECcCCc-CCHH
Confidence            999987 5544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=6.7e-22  Score=234.01  Aligned_cols=109  Identities=16%  Similarity=0.086  Sum_probs=53.8

Q ss_pred             CCceEEEEcCCCcchhhhhhhcC-CCCCceEEeec---CCCcccc------cccccCCCCCcEEEccCCCC-CCc--cCC
Q 048829          699 PSVKVLDVYGCPKLESIAERLDN-NTSLETINISN---CENLKIL------SSGLHNLCQLQQIGIGGCGN-LES--FPE  765 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~l~~---c~~l~~l------p~~~~~l~~L~~L~l~~~~~-l~~--~~~  765 (976)
                      ++|++|+++.+.+.+..+..+.. +++|++|++++   |+.++..      +..+.++++|++|++++|.. ++.  +..
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            56666666666665555555544 66677777663   3444432      22344466666666655432 110  000


Q ss_pred             CCCCCCCccEEEecCCcCcc-cCCCcCCCCCccceEEEeCCCC
Q 048829          766 GGLPCAKLRRLEIYDCKRLE-ALPKGLHNLTSLQQLTIIGGEL  807 (976)
Q Consensus       766 ~~~~~~~L~~L~l~~c~~l~-~~~~~l~~l~~L~~L~l~~~~l  807 (976)
                      ....+++|++|++++|.... .++..+..+++|++|++++|.+
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence            01124556666666655322 1223334455555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.82  E-value=7.3e-23  Score=234.20  Aligned_cols=371  Identities=20%  Similarity=0.190  Sum_probs=222.6

Q ss_pred             CCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcc----cCccccCCCCCccEEEeecCCCCCCCCC
Q 048829          501 CSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLV----KLPQSSLSLSSLKEIEIYKCSSLVSFPE  576 (976)
Q Consensus       501 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~l~~l~~  576 (976)
                      ++|++|+++++. +......   ..+..+    ++|+.|++++|....    .++..+..+++|++|++++| .++....
T Consensus         3 ~~l~~L~Ls~~~-l~~~~~~---~~~~~~----~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~   73 (461)
T 1z7x_W            3 LDIQSLDIQCEE-LSDARWA---ELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGV   73 (461)
T ss_dssp             EEEEEEEEESCC-CCHHHHH---HHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHH
T ss_pred             ccceehhhhhcc-cCchhHH---HHHhhc----CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHH
Confidence            567778887653 3332211   112233    788888888877543    34555667788888888874 4433111


Q ss_pred             ---cCCCC----CCcEEEEccCCCCCC-----CCCccccCCCCcccEEEEecCCCCccc-----ccc--cCCCCCcEEee
Q 048829          577 ---VALPS----KLKKIEIRECDALKS-----LPEPWMCDTSSSLEILKIWDCHSLTYI-----AEV--QLPLSLKRLDI  637 (976)
Q Consensus       577 ---~~~~~----~L~~L~l~~~~~l~~-----l~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~--~~~~~L~~L~l  637 (976)
                         ...++    +|++|++++|. ++.     ++..+  ..+++|++|++++|. ++..     ...  ...++|++|++
T Consensus        74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L  149 (461)
T 1z7x_W           74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTL--RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQL  149 (461)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHT--TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHH--ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEEC
Confidence               11122    57778887776 442     22222  356677777777765 2211     111  11234666666


Q ss_pred             ccCcCcccc--ccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhh
Q 048829          638 QRCNKIRTL--TVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESI  715 (976)
Q Consensus       638 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  715 (976)
                      ++|..-...  ..+..+                                          ..+ ++|++|++++|.+.+..
T Consensus       150 ~~n~l~~~~~~~l~~~l------------------------------------------~~~-~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          150 EYCSLSAASCEPLASVL------------------------------------------RAK-PDFKELTVSNNDINEAG  186 (461)
T ss_dssp             TTSCCBGGGHHHHHHHH------------------------------------------HHC-TTCCEEECCSSBCHHHH
T ss_pred             CCCCCCHHHHHHHHHHH------------------------------------------hhC-CCCCEEECcCCCcchHH
Confidence            666321100  000000                                          011 67888888888876654


Q ss_pred             hhhhc-----CCCCCceEEeecCCCccc----ccccccCCCCCcEEEccCCCCCCcc------CCCCCCCCCccEEEecC
Q 048829          716 AERLD-----NNTSLETINISNCENLKI----LSSGLHNLCQLQQIGIGGCGNLESF------PEGGLPCAKLRRLEIYD  780 (976)
Q Consensus       716 ~~~~~-----~l~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~l~~  780 (976)
                      +..+.     ..++|++|++++|.....    ++..+..+++|++|++++|. ++..      +.....+++|++|++++
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcC
Confidence            44433     366888999988754432    46677778889999998884 3322      11223467899999999


Q ss_pred             CcCccc----CCCcCCCCCccceEEEeCCCCCCcccC-------CCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829          781 CKRLEA----LPKGLHNLTSLQQLTIIGGELPSLEED-------GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY  849 (976)
Q Consensus       781 c~~l~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  849 (976)
                      |.....    ++..+..+++|++|++++|.+......       ...++|++|++++|.+........+..+..+++|++
T Consensus       266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  345 (461)
T 1z7x_W          266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE  345 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred             CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence            863332    566677788999999999887643221       123689999999998776533222245677899999


Q ss_pred             EEEeccCCCCccC-CCCCcccccCCCCC-CccccceeeccccCCCc-----cccccccCCCCCCeEeecCCCCccccCC-
Q 048829          850 LLIRGCDDDMVSF-PPEPEDRRLGTTLP-LPASLTSLSIAFFPNLE-----SLSSSIVDLQNLTKLTLYDCPKLKYFPE-  921 (976)
Q Consensus       850 L~l~~c~~~~~~~-~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~-----~l~~~l~~l~~L~~L~l~~c~~l~~i~~-  921 (976)
                      |++++|  .+... +....     .++. ..++|++|++++| .++     .+|..+..+++|++|++++|+ ++.... 
T Consensus       346 L~Ls~n--~i~~~~~~~l~-----~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~  416 (461)
T 1z7x_W          346 LQISNN--RLEDAGVRELC-----QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGIL  416 (461)
T ss_dssp             EECCSS--BCHHHHHHHHH-----HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHH
T ss_pred             EEccCC--ccccccHHHHH-----HHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHH
Confidence            999993  33221 11110     0011 2579999999996 566     688888889999999999975 443211 


Q ss_pred             ---CCC---cccccceeecCCc
Q 048829          922 ---KGL---PSSLLQLRIYRCP  937 (976)
Q Consensus       922 ---~~~---~~~L~~L~i~~c~  937 (976)
                         ..+   ...|+.|++.++.
T Consensus       417 ~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          417 QLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHhccCCcchhheeecccc
Confidence               011   2367777776653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=9.6e-19  Score=202.91  Aligned_cols=215  Identities=27%  Similarity=0.338  Sum_probs=127.1

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      .+++.|++++|.. +.+|..+.  ++|++|++++ +.++.+|.  .+++|++|++++|. ++.+|.     .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~-N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECS-CCCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred             CCCcEEEecCCCc-CccChhhC--CCCcEEEecC-CCCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence            4688899888665 46776554  7899999988 56777776  67888999998887 777775     467888888


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE  693 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  693 (976)
                      +++|. ++.++.  .+++|+.|++++|. ++.+  |..                                          
T Consensus       108 Ls~N~-l~~l~~--~l~~L~~L~L~~N~-l~~l--p~~------------------------------------------  139 (622)
T 3g06_A          108 IFSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSL--PVL------------------------------------------  139 (622)
T ss_dssp             ECSCC-CCCCCC--CCTTCCEEECCSSC-CSCC--CCC------------------------------------------
T ss_pred             CcCCc-CCCCCC--CCCCcCEEECCCCC-CCcC--CCC------------------------------------------
Confidence            88763 444443  45567777777663 2222  110                                          


Q ss_pred             ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829          694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL  773 (976)
Q Consensus       694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L  773 (976)
                          +++|++|++++|.+.+ +|.   .+++|+.|++++| .++.+|   ..+++|+.|++++| .++.+|..   .++|
T Consensus       140 ----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L  203 (622)
T 3g06_A          140 ----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDN-QLASLPTL---PSEL  203 (622)
T ss_dssp             ----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTC
T ss_pred             ----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCC-CCCCCCCc---cchh
Confidence                1455555555554432 221   2345666666653 344444   23456666666665 34444432   2456


Q ss_pred             cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCc
Q 048829          774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGI  830 (976)
Q Consensus       774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~  830 (976)
                      +.|++++|. +..+|..   +++|+.|++++|.|+.++  ..+++|+.|++++|.+.
T Consensus       204 ~~L~L~~N~-l~~l~~~---~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          204 YKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT  254 (622)
T ss_dssp             CEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred             hEEECcCCc-ccccCCC---CCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC
Confidence            666666655 4444432   355666666666555554  33455555555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=9.1e-19  Score=197.97  Aligned_cols=199  Identities=19%  Similarity=0.243  Sum_probs=137.2

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRL  776 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L  776 (976)
                      ++|++|+|++|.+.+..+..+.++++|++|++++| .++.+ +..+..+++|++|++++|. ++.++. .+..+++|++|
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEe
Confidence            56777777777766666667777777777777775 34444 3456777777777777774 444443 45567777777


Q ss_pred             EecCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEecc
Q 048829          777 EIYDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGC  855 (976)
Q Consensus       777 ~l~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  855 (976)
                      ++++|..++.++. .+..+++|++|++++|.++.++....+++|+.|++++|.+....+    ..+.++++|+.|++++ 
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~-  240 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQ-  240 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTT-
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCC-
Confidence            7777766666665 567777777777777777777766667777888887777666544    4577778888888877 


Q ss_pred             CCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829          856 DDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~  914 (976)
                       +.+..++...        |..+++|+.|+|++ +.++.+|. .+..+++|+.|++++|+
T Consensus       241 -n~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          241 -SQIQVIERNA--------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             -CCCCEECTTS--------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             -CceeEEChhh--------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence             2444444332        35677888888887 56767765 45667788888877765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=9.3e-19  Score=198.66  Aligned_cols=200  Identities=23%  Similarity=0.236  Sum_probs=143.6

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~  777 (976)
                      ++|++|+|++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|. ++.+|. .+..+++|++|+
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  177 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLD  177 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEe
Confidence            567777777777776667777778888888888864333334457778888888888874 445544 456677888888


Q ss_pred             ecCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          778 IYDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       778 l~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      +++|..++.++. .+..+++|++|++++|.+..++....+++|+.|++++|.+....+    ..+.++++|+.|++++ +
T Consensus       178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~-n  252 (452)
T 3zyi_A          178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMN-S  252 (452)
T ss_dssp             CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTT-S
T ss_pred             CCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCC-C
Confidence            888777777765 467788888888888888877776777788888888888776655    4577888888888887 2


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~  914 (976)
                       .+..++...        |..+++|+.|++++ +.++.+|. .+..+++|+.|++++|+
T Consensus       253 -~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          253 -QVSLIERNA--------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             -CCCEECTTT--------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             -cCceECHHH--------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence             344443322        35778888888888 57777765 45678888888888765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=2.8e-19  Score=195.94  Aligned_cols=205  Identities=17%  Similarity=0.091  Sum_probs=96.8

Q ss_pred             CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccc--cccCCCCCcEEEccCCCCCCccC-CCCCCCCCccEE
Q 048829          700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSS--GLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRL  776 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L  776 (976)
                      +|++|++++|.+.+..+..+..+++|++|++++| .++.+|.  .+..+++|++|++++|..++.++ ..+..+++|++|
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            4444444444444333333455555555555553 2333332  34445555555555554343332 233445555555


Q ss_pred             EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      ++++|...+..|..+..+++|++|++++|.+..++..  ..+++|+.|++++|.+....+... ......+.++.+++++
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~~~~l~~l~L~~  258 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-STGETNSLIKKFTFRN  258 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEES
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc-ccccccchhhcccccc
Confidence            5555554343444555555555555555555444332  124455555555555443322110 0112344555555555


Q ss_pred             cCCCC----ccCCCCCcccccCCCCCCccccceeeccccCCCcccccc-ccCCCCCCeEeecCCCCcc
Q 048829          855 CDDDM----VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSS-IVDLQNLTKLTLYDCPKLK  917 (976)
Q Consensus       855 c~~~~----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l~  917 (976)
                      + ...    ..+|...         ..+++|+.|++++ +.++.+|.. +..+++|++|++++|+...
T Consensus       259 ~-~l~~~~l~~l~~~l---------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          259 V-KITDESLFQVMKLL---------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             C-BCCHHHHHHHHHHH---------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             c-cccCcchhhhHHHH---------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            2 110    0122211         3556667777766 466666665 3667777777777765433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=4.3e-19  Score=194.45  Aligned_cols=225  Identities=20%  Similarity=0.159  Sum_probs=175.1

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCC--CCCCCCCccE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPE--GGLPCAKLRR  775 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~  775 (976)
                      ++|++|++++|.+.+..+..+.++++|++|++++|. ++.+| ..+.++++|++|++++| .++.+|.  .+..+++|++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcE
Confidence            788999999998888778889999999999999965 45554 44889999999999999 5667776  5677999999


Q ss_pred             EEecCCcCcccC-CCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEE
Q 048829          776 LEIYDCKRLEAL-PKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLI  852 (976)
Q Consensus       776 L~l~~c~~l~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  852 (976)
                      |++++|..++.+ +..+..+++|++|++++|.+..+...  ..+++|++|++++|.......    ..+..+++|++|++
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L  229 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLEL  229 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEE
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhhhcccccEEEC
Confidence            999999766666 46789999999999999999887443  456899999999999754433    34567899999999


Q ss_pred             eccCCCCccCCCCCcccccCCCCCCccccceeeccccC----CCccccccccCCCCCCeEeecCCCCccccCCCCC--cc
Q 048829          853 RGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFP----NLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGL--PS  926 (976)
Q Consensus       853 ~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~--~~  926 (976)
                      ++|  .+..++....     ......+.++.++++++.    .+..+|..+..+++|++|++++| +++.+|...+  .+
T Consensus       230 ~~n--~l~~~~~~~l-----~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~  301 (353)
T 2z80_A          230 RDT--DLDTFHFSEL-----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLT  301 (353)
T ss_dssp             ESC--BCTTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred             CCC--cccccccccc-----ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCC
Confidence            993  4444432210     111245667777777742    22357888899999999999995 6788987643  57


Q ss_pred             cccceeecCCc
Q 048829          927 SLLQLRIYRCP  937 (976)
Q Consensus       927 ~L~~L~i~~c~  937 (976)
                      +|++|++++|+
T Consensus       302 ~L~~L~L~~N~  312 (353)
T 2z80_A          302 SLQKIWLHTNP  312 (353)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEeeCCC
Confidence            99999999975

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=9.1e-19  Score=187.78  Aligned_cols=198  Identities=21%  Similarity=0.253  Sum_probs=96.0

Q ss_pred             EEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCccc---cc-ccCCCCCcEEee
Q 048829          562 EIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYI---AE-VQLPLSLKRLDI  637 (976)
Q Consensus       562 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~---~~-~~~~~~L~~L~l  637 (976)
                      .++.++ ..++.+|. ..+++|++|++++|. ++.++...+ ..+++|++|++++|.. +.+   +. ...+++|++|++
T Consensus        11 ~l~c~~-~~l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           11 EIRCNS-KGLTSVPT-GIPSSATRLELESNK-LQSLPHGVF-DKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EEECCS-SCCSSCCS-CCCTTCCEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEEC
T ss_pred             EEEcCC-CCcccCCC-CCCCCCCEEECCCCc-cCccCHhHh-hccccCCEEECCCCcc-CcccCcccccccccccCEEEC
Confidence            455555 45666664 334677777777776 666666544 5667777777776632 221   11 122345555555


Q ss_pred             ccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh-
Q 048829          638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA-  716 (976)
Q Consensus       638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-  716 (976)
                      ++|. ++.+  +..+..+                                           ++|++|++++|.+.+..+ 
T Consensus        86 s~n~-i~~l--~~~~~~l-------------------------------------------~~L~~L~l~~n~l~~~~~~  119 (306)
T 2z66_A           86 SFNG-VITM--SSNFLGL-------------------------------------------EQLEHLDFQHSNLKQMSEF  119 (306)
T ss_dssp             CSCS-EEEE--EEEEETC-------------------------------------------TTCCEEECTTSEEESSTTT
T ss_pred             CCCc-cccC--hhhcCCC-------------------------------------------CCCCEEECCCCcccccccc
Confidence            5553 1111  1111111                                           344555555544433332 


Q ss_pred             hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCC-ccCCCCCCCCCccEEEecCCcCcccCCCcCCCCC
Q 048829          717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLE-SFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLT  795 (976)
Q Consensus       717 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~  795 (976)
                      ..+..+++|++|++++|......+..+..+++|++|++++|...+ .+|..+..+++|++|++++|...+..|..+..++
T Consensus       120 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  199 (306)
T 2z66_A          120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  199 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence            344455555555555544333334444445555555555553222 2344444455555555555543333344444455


Q ss_pred             ccceEEEeCCCCCCc
Q 048829          796 SLQQLTIIGGELPSL  810 (976)
Q Consensus       796 ~L~~L~l~~~~l~~~  810 (976)
                      +|++|++++|.+..+
T Consensus       200 ~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          200 SLQVLNMSHNNFFSL  214 (306)
T ss_dssp             TCCEEECTTSCCSBC
T ss_pred             CCCEEECCCCccCcc
Confidence            555555554444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.79  E-value=7.3e-21  Score=225.28  Aligned_cols=395  Identities=17%  Similarity=0.156  Sum_probs=221.4

Q ss_pred             cccccCCCCCeEEEcCCCCcccchh------hhhHHHHHHhhhccccccEEEeeccCCcccCccccC-CCCCccEEEeec
Q 048829          495 GLLQDICSLKSLEIRGCPKLQSLVA------EEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSL-SLSSLKEIEIYK  567 (976)
Q Consensus       495 ~~~~~l~~L~~L~l~~c~~l~~l~~------~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~-~l~~L~~L~l~~  567 (976)
                      ..+..+++|+.|++++|+.+..+..      .....++..+...+++|++|++++|......+..+. .+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            4456677788888888766543321      111123333334457888888888765444443443 577888888888


Q ss_pred             CCCCCC--CCCc-CCCCCCcEEEEccCCCCCCCCCccc---cCCCCcccEEEEecCC-CCc--ccccc-cCCCCCcEEee
Q 048829          568 CSSLVS--FPEV-ALPSKLKKIEIRECDALKSLPEPWM---CDTSSSLEILKIWDCH-SLT--YIAEV-QLPLSLKRLDI  637 (976)
Q Consensus       568 c~~l~~--l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~---~~~l~~L~~L~l~~~~-~l~--~~~~~-~~~~~L~~L~l  637 (976)
                      |..++.  ++.. ..+++|++|++++|. ++.......   ...+++|++|++++|. .+.  .+... ..+++|++|++
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L  218 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL  218 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence            765543  2222 246788888888876 444322111   1356788888888775 111  11111 23467888888


Q ss_pred             ccCcCccccccccccccccccccCCCCcceEeecCC-------------------CCccccccCCCc-ccccccccccCC
Q 048829          638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSC-------------------PSLTCIFSKNEL-PATLESLEVGNL  697 (976)
Q Consensus       638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-------------------~~l~~~~~~~~~-~~~~~~~~~~~~  697 (976)
                      ++|..++.+  +..+..+       ++|+.|.++.|                   ++++.+...... ...+..  +...
T Consensus       219 ~~~~~~~~l--~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~--~~~~  287 (594)
T 2p1m_B          219 NRAVPLEKL--ATLLQRA-------PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA--VYSV  287 (594)
T ss_dssp             CTTSCHHHH--HHHHHHC-------TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG--GHHH
T ss_pred             CCCCcHHHH--HHHHhcC-------CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH--HHHh
Confidence            887655543  3333332       56777765443                   333332000000 000000  0001


Q ss_pred             CCCceEEEEcCCCcchhh-hhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCC--------CCCCcc--CCC
Q 048829          698 PPSVKVLDVYGCPKLESI-AERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGC--------GNLESF--PEG  766 (976)
Q Consensus       698 ~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~--------~~l~~~--~~~  766 (976)
                      .++|++|++++|.+.... ...+..+++|++|++++|.....++.....+++|++|++++|        ..++..  ...
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l  367 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV  367 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence            278999999999865543 344678899999999987222233444445889999999553        222211  000


Q ss_pred             CCCCCCccEEEecCCcCcccCCCcC-CCCCccceEEEe--C----CCCCCccc-------CCCCCccceeeecCCCCccc
Q 048829          767 GLPCAKLRRLEIYDCKRLEALPKGL-HNLTSLQQLTII--G----GELPSLEE-------DGLPTNLHSLRIEGNMGIWK  832 (976)
Q Consensus       767 ~~~~~~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~l~--~----~~l~~~~~-------~~~~~~L~~L~l~~~~~~~~  832 (976)
                      ...+++|+.|.+..+......+..+ ..+++|+.|+++  +    +.++..+.       ...+++|+.|++++ .+...
T Consensus       368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence            1136789999776655333222333 357889999998  3    55654332       12356888888876 33333


Q ss_pred             hhhhcCCccc-ccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcccc-ccccCCCCCCeEee
Q 048829          833 SMIERGRGFH-RFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLS-SSIVDLQNLTKLTL  910 (976)
Q Consensus       833 ~~~~~~~~~~-~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l  910 (976)
                      .+.    .+. .+++|+.|++++|. .........        ...+++|+.|++++|+.-.... ..+..+++|++|++
T Consensus       447 ~~~----~l~~~~~~L~~L~L~~~~-i~~~~~~~l--------~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          447 VFE----YIGTYAKKMEMLSVAFAG-DSDLGMHHV--------LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM  513 (594)
T ss_dssp             HHH----HHHHHCTTCCEEEEESCC-SSHHHHHHH--------HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred             HHH----HHHHhchhccEeeccCCC-CcHHHHHHH--------HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence            331    233 37888888888842 111100000        0246888888888876522222 24455788888888


Q ss_pred             cCCCC
Q 048829          911 YDCPK  915 (976)
Q Consensus       911 ~~c~~  915 (976)
                      ++|+.
T Consensus       514 ~~~~~  518 (594)
T 2p1m_B          514 SSCSV  518 (594)
T ss_dssp             ESSCC
T ss_pred             eCCCC
Confidence            88865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=8.1e-18  Score=195.14  Aligned_cols=260  Identities=26%  Similarity=0.353  Sum_probs=199.5

Q ss_pred             CCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEee
Q 048829          558 SSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDI  637 (976)
Q Consensus       558 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l  637 (976)
                      .+++.|++++ +.++.+|... +++|++|++++|. ++.+|.     .+++|++|++++|. ++.++.  .+++|+.|++
T Consensus        40 ~~l~~L~ls~-n~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGE-SGLTTLPDCL-PAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCS-SCCSCCCSCC-CTTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEE
T ss_pred             CCCcEEEecC-CCcCccChhh-CCCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC
Confidence            4689999998 6788888633 4899999999997 777776     47889999999975 556665  5667888888


Q ss_pred             ccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhh
Q 048829          638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAE  717 (976)
Q Consensus       638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  717 (976)
                      ++|. ++.+  |.                                              .+++|+.|++++|.+.. +|.
T Consensus       109 s~N~-l~~l--~~----------------------------------------------~l~~L~~L~L~~N~l~~-lp~  138 (622)
T 3g06_A          109 FSNP-LTHL--PA----------------------------------------------LPSGLCKLWIFGNQLTS-LPV  138 (622)
T ss_dssp             CSCC-CCCC--CC----------------------------------------------CCTTCCEEECCSSCCSC-CCC
T ss_pred             cCCc-CCCC--CC----------------------------------------------CCCCcCEEECCCCCCCc-CCC
Confidence            8774 2222  11                                              12678888998887654 444


Q ss_pred             hhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCcc
Q 048829          718 RLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSL  797 (976)
Q Consensus       718 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L  797 (976)
                         .+++|++|++++| .++.+|..   +++|+.|++++| .++.+|   ..+++|+.|++++|. +..+|..   +++|
T Consensus       139 ---~l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L  203 (622)
T 3g06_A          139 ---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPTL---PSEL  203 (622)
T ss_dssp             ---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCCC---CTTC
T ss_pred             ---CCCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCCc---cchh
Confidence               2488999999996 55566643   578999999998 566777   346799999999988 5667653   4789


Q ss_pred             ceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCC
Q 048829          798 QQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPL  877 (976)
Q Consensus       798 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~  877 (976)
                      +.|++++|.+..++.  .+++|+.|++++|.+....        ..+++|++|++++  +.+..+|.            .
T Consensus       204 ~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~--N~L~~lp~------------~  259 (622)
T 3g06_A          204 YKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSG--NRLTSLPM------------L  259 (622)
T ss_dssp             CEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCS--SCCSCCCC------------C
T ss_pred             hEEECcCCcccccCC--CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCC--CCCCcCCc------------c
Confidence            999999999998874  4688999999999876522        3568899999998  35666665            3


Q ss_pred             ccccceeeccccCCCccccccccCCCCCCeEeecCCCCccc
Q 048829          878 PASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKY  918 (976)
Q Consensus       878 l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~  918 (976)
                      +++|+.|++++ +.++.+|..+..+++|+.|++++|+..+.
T Consensus       260 ~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          260 PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             cccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence            57899999999 57889998899999999999999764433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=9.4e-20  Score=196.05  Aligned_cols=237  Identities=12%  Similarity=0.079  Sum_probs=152.2

Q ss_pred             cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEE
Q 048829          533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEIL  612 (976)
Q Consensus       533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L  612 (976)
                      +++|+.|++++|......|..+..+++|++|++++ +.++..+....+++|++|++++|. ++.++              
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~--------------   96 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLDLESLSTLRTLDLNNNY-VQELL--------------   96 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-SCCEEEEEETTCTTCCEEECCSSE-EEEEE--------------
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-CcCCcchhhhhcCCCCEEECcCCc-ccccc--------------
Confidence            36777777777766555555667777777777777 344433333445555555555554 22222              


Q ss_pred             EEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccc
Q 048829          613 KIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESL  692 (976)
Q Consensus       613 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  692 (976)
                                     ..++|+.|++++|.. +.+  +.                    .                     
T Consensus        97 ---------------~~~~L~~L~l~~n~l-~~~--~~--------------------~---------------------  117 (317)
T 3o53_A           97 ---------------VGPSIETLHAANNNI-SRV--SC--------------------S---------------------  117 (317)
T ss_dssp             ---------------ECTTCCEEECCSSCC-SEE--EE--------------------C---------------------
T ss_pred             ---------------CCCCcCEEECCCCcc-CCc--Cc--------------------c---------------------
Confidence                           113455666655531 111  00                    0                     


Q ss_pred             cccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccc-cCCCCCcEEEccCCCCCCccCCCCCCCC
Q 048829          693 EVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGL-HNLCQLQQIGIGGCGNLESFPEGGLPCA  771 (976)
Q Consensus       693 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~  771 (976)
                          ..++|++|++++|.+.+..+..+..+++|++|++++|......+..+ ..+++|++|++++| .++.++.. ..++
T Consensus       118 ----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~  191 (317)
T 3o53_A          118 ----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFA  191 (317)
T ss_dssp             ----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCT
T ss_pred             ----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccc
Confidence                01567888888887777777777788888888888865554445555 36788888888888 45555543 3477


Q ss_pred             CccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC-CCCCccceeeecCCCCccchhhhcCCcccccCcccEE
Q 048829          772 KLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL  850 (976)
Q Consensus       772 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  850 (976)
                      +|++|++++|. +..+|..+..+++|+.|++++|.+..++.. ..+++|+.|++++|+......+   ..+..+++|+.|
T Consensus       192 ~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l  267 (317)
T 3o53_A          192 KLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTV  267 (317)
T ss_dssp             TCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHH
T ss_pred             cCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEE
Confidence            88888888887 556666788888888888888888877643 3456778888888777633332   346667777777


Q ss_pred             EEec
Q 048829          851 LIRG  854 (976)
Q Consensus       851 ~l~~  854 (976)
                      ++++
T Consensus       268 ~l~~  271 (317)
T 3o53_A          268 AKQT  271 (317)
T ss_dssp             HHHH
T ss_pred             ECCC
Confidence            7775

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.79  E-value=2.6e-18  Score=182.07  Aligned_cols=205  Identities=22%  Similarity=0.240  Sum_probs=166.6

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCcc-CCCCCCCCCccE
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESF-PEGGLPCAKLRR  775 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~  775 (976)
                      +|++|++|++++|.+.+..+..+..+++|++|++++|......|..+.++++|++|++++|..++.+ |..+..+++|++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            3578999999999998887888999999999999997555444888999999999999999767776 556778999999


Q ss_pred             EEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829          776 LEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR  853 (976)
Q Consensus       776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  853 (976)
                      |++++|......|..+..+++|++|++++|.+..++..  +.+++|++|++++|.+.....    ..+.++++|++|+++
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLH  185 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECC
Confidence            99999996665677889999999999999999988764  347889999999998776544    457888999999999


Q ss_pred             ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCc
Q 048829          854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKL  916 (976)
Q Consensus       854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l  916 (976)
                      + +......|..+         ..+++|+.|++++ +.++.++. .+..+++|++|++++|+..
T Consensus       186 ~-n~l~~~~~~~~---------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          186 Q-NRVAHVHPHAF---------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             S-SCCCEECTTTT---------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             C-CcccccCHhHc---------cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            8 33333334443         5788999999999 57777765 5788899999999987643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=1.1e-18  Score=185.06  Aligned_cols=220  Identities=18%  Similarity=0.243  Sum_probs=125.1

Q ss_pred             cEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCccc-ccc-cCCCCCcEEeec
Q 048829          561 KEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYI-AEV-QLPLSLKRLDIQ  638 (976)
Q Consensus       561 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~-~~~~~L~~L~l~  638 (976)
                      +.++.++ ..++.+|. ..+++|++|++++|. ++.++...+ ..+++|++|++++|. ++.+ +.. ..+++|++|+++
T Consensus        14 ~~~~c~~-~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAVPV-GIPAASQRIFLHGNR-ISHVPAASF-RACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCS-SCCSSCCT-TCCTTCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCc-CCcccCCc-CCCCCceEEEeeCCc-CCccCHHHc-ccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCC
Confidence            3455555 45566653 345667777777766 555554433 466677777776653 2332 211 334455566665


Q ss_pred             cCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhh
Q 048829          639 RCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER  718 (976)
Q Consensus       639 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  718 (976)
                      +|..++.+. +..+..                                          + ++|++|++++|.+.+..+..
T Consensus        89 ~n~~l~~~~-~~~~~~------------------------------------------l-~~L~~L~l~~n~l~~~~~~~  124 (285)
T 1ozn_A           89 DNAQLRSVD-PATFHG------------------------------------------L-GRLHTLHLDRCGLQELGPGL  124 (285)
T ss_dssp             SCTTCCCCC-TTTTTT------------------------------------------C-TTCCEEECTTSCCCCCCTTT
T ss_pred             CCCCccccC-HHHhcC------------------------------------------C-cCCCEEECCCCcCCEECHhH
Confidence            554333320 011110                                          0 56677777777666666666


Q ss_pred             hcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCCcCCCCCcc
Q 048829          719 LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSL  797 (976)
Q Consensus       719 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L  797 (976)
                      +..+++|++|++++|......+..+..+++|++|++++| .++.+|. .+..+++|++|++++|...+..|..+..+++|
T Consensus       125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence            777777777777775443333444666777777777777 4444544 35556777777777776555556666777777


Q ss_pred             ceEEEeCCCCCCcccC--CCCCccceeeecCCCCc
Q 048829          798 QQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGI  830 (976)
Q Consensus       798 ~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~  830 (976)
                      +.|++++|.+..++..  ..+++|+.|++++|+..
T Consensus       204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            7777777766665431  23445555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=1.4e-20  Score=222.75  Aligned_cols=151  Identities=11%  Similarity=0.055  Sum_probs=85.1

Q ss_pred             CCceEEEEcCCCcchhhhhhhc-CCCCCceEEee-----cCCCcccc------cccccCCCCCcEEEccCCCCCCc-cCC
Q 048829          699 PSVKVLDVYGCPKLESIAERLD-NNTSLETINIS-----NCENLKIL------SSGLHNLCQLQQIGIGGCGNLES-FPE  765 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~-----~c~~l~~l------p~~~~~l~~L~~L~l~~~~~l~~-~~~  765 (976)
                      ++|++|.++.+.+.+..+..+. .+++|++|+++     +|+.++..      +..+.++++|++|++++  .++. .+.
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~  449 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFE  449 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHH
Confidence            6777787777776666555554 57888888888     55666633      22355677888888865  2221 111


Q ss_pred             CCC-CCCCccEEEecCCcCcccCCCcC-CCCCccceEEEeCCCCCCccc---CCCCCccceeeecCCCCccchhhhcCCc
Q 048829          766 GGL-PCAKLRRLEIYDCKRLEALPKGL-HNLTSLQQLTIIGGELPSLEE---DGLPTNLHSLRIEGNMGIWKSMIERGRG  840 (976)
Q Consensus       766 ~~~-~~~~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~  840 (976)
                      .+. .+++|++|++++|......+..+ ..+++|++|++++|.++....   ...+++|+.|++++|+.......   ..
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l  526 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACK---LL  526 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHH---HH
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH---HH
Confidence            111 25678888888777433222222 456777777777776643211   12245677777777766332221   11


Q ss_pred             ccccCcccEEEEec
Q 048829          841 FHRFSSLRYLLIRG  854 (976)
Q Consensus       841 ~~~l~~L~~L~l~~  854 (976)
                      ...+|+|+...+..
T Consensus       527 ~~~lp~l~i~~~~~  540 (594)
T 2p1m_B          527 GQKMPKLNVEVIDE  540 (594)
T ss_dssp             HHHCTTEEEEEECS
T ss_pred             HHhCCCCEEEEecC
Confidence            14455555544443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=5.7e-18  Score=191.44  Aligned_cols=222  Identities=15%  Similarity=0.181  Sum_probs=183.2

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccE
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRR  775 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~  775 (976)
                      ++++++.|+|++|.+.+..+..+.++++|++|++++|......+..+.++++|++|++++| .++.+|. .+..+++|++
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCE
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCce
Confidence            3478999999999998888899999999999999997655555688999999999999999 5666665 5777999999


Q ss_pred             EEecCCcCcccCCCcCCCCCccceEEEeC-CCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEE
Q 048829          776 LEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLI  852 (976)
Q Consensus       776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  852 (976)
                      |++++|......+..+..+++|++|++++ +.+..++..  ..+++|++|++++|.+....      .+..+++|++|++
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L  214 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDL  214 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEEC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEEC
Confidence            99999995444445789999999999999 778777764  34789999999999887542      3789999999999


Q ss_pred             eccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCC--ccccc
Q 048829          853 RGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGL--PSSLL  929 (976)
Q Consensus       853 ~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~  929 (976)
                      ++ + .+..++...        |..+++|+.|++++ +.++.++. .+..+++|++|++++ ++++.++...+  .++|+
T Consensus       215 s~-N-~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          215 SG-N-HLSAIRPGS--------FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             TT-S-CCCEECTTT--------TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCC
T ss_pred             CC-C-ccCccChhh--------hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCC
Confidence            99 3 445443332        36899999999999 57777754 788999999999999 57888887654  47999


Q ss_pred             ceeecCCc
Q 048829          930 QLRIYRCP  937 (976)
Q Consensus       930 ~L~i~~c~  937 (976)
                      .|++++||
T Consensus       283 ~L~L~~Np  290 (440)
T 3zyj_A          283 RIHLHHNP  290 (440)
T ss_dssp             EEECCSSC
T ss_pred             EEEcCCCC
Confidence            99999876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=3.9e-18  Score=193.49  Aligned_cols=222  Identities=18%  Similarity=0.176  Sum_probs=182.7

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccE
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRR  775 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~  775 (976)
                      +|+++++|+|++|.+.+..+..+.++++|++|++++|......|..+.++++|++|++++| .++.+|.. +..+++|++
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCE
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCE
Confidence            4578999999999999988999999999999999997655555788999999999999999 46666654 667999999


Q ss_pred             EEecCCcCcccCCCcCCCCCccceEEEeC-CCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEE
Q 048829          776 LEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLI  852 (976)
Q Consensus       776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  852 (976)
                      |++++|......+..+..+++|+.|++++ +.+..++..  ..+++|++|++++|.+....      .+..+++|++|++
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L  225 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEM  225 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEEC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc------cccccccccEEEC
Confidence            99999985443445789999999999999 788887764  34789999999999887642      3788999999999


Q ss_pred             eccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccc-cccccCCCCCCeEeecCCCCccccCCCCC--ccccc
Q 048829          853 RGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESL-SSSIVDLQNLTKLTLYDCPKLKYFPEKGL--PSSLL  929 (976)
Q Consensus       853 ~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~  929 (976)
                      ++ + .+..++...        |..+++|+.|++++ +.++.+ +..+..+++|+.|++++| +++.++...+  .++|+
T Consensus       226 s~-N-~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          226 SG-N-HFPEIRPGS--------FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             TT-S-CCSEECGGG--------GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCC
T ss_pred             cC-C-cCcccCccc--------ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCC
Confidence            99 3 444443322        36899999999999 566666 447889999999999995 7888887655  47899


Q ss_pred             ceeecCCc
Q 048829          930 QLRIYRCP  937 (976)
Q Consensus       930 ~L~i~~c~  937 (976)
                      +|++++||
T Consensus       294 ~L~L~~Np  301 (452)
T 3zyi_A          294 ELHLHHNP  301 (452)
T ss_dssp             EEECCSSC
T ss_pred             EEEccCCC
Confidence            99999976

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=1.6e-18  Score=185.80  Aligned_cols=223  Identities=17%  Similarity=0.129  Sum_probs=160.1

Q ss_pred             CCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcc--cccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccE
Q 048829          698 PPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRR  775 (976)
Q Consensus       698 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  775 (976)
                      |++|++|++++|.+....+..+.++++|++|++++|....  ..|..+..+++|++|++++| .+..+|..+..+++|++
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH  105 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence            4678888888888765445557888888888888864332  22556667888888888888 45567766777888888


Q ss_pred             EEecCCcCcccCC--CcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEE
Q 048829          776 LEIYDCKRLEALP--KGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLL  851 (976)
Q Consensus       776 L~l~~c~~l~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  851 (976)
                      |++++|. +..++  ..+..+++|++|++++|.+......  ..+++|++|++++|.+.....+   ..+..+++|++|+
T Consensus       106 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~  181 (306)
T 2z66_A          106 LDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLD  181 (306)
T ss_dssp             EECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEE
T ss_pred             EECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch---hHHhhCcCCCEEE
Confidence            8888887 44444  3678888888888888887765543  3467888888888877652222   4678888999999


Q ss_pred             EeccCCCCccC-CCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCC--CCccc
Q 048829          852 IRGCDDDMVSF-PPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEK--GLPSS  927 (976)
Q Consensus       852 l~~c~~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~--~~~~~  927 (976)
                      +++ + .+..+ |...         ..+++|+.|++++ +.++.++. .+..+++|++|++++|+..+..+..  .+|++
T Consensus       182 Ls~-n-~l~~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          182 LSQ-C-QLEQLSPTAF---------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             CTT-S-CCCEECTTTT---------TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             CCC-C-CcCCcCHHHh---------cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence            988 3 44444 4333         5788999999998 56777765 6778889999999986543333332  34568


Q ss_pred             ccceeecCCc
Q 048829          928 LLQLRIYRCP  937 (976)
Q Consensus       928 L~~L~i~~c~  937 (976)
                      |++|++++|+
T Consensus       250 L~~L~L~~N~  259 (306)
T 2z66_A          250 LAFLNLTQND  259 (306)
T ss_dssp             CCEEECTTCC
T ss_pred             CCEEEccCCC
Confidence            9999998875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=2.5e-21  Score=221.44  Aligned_cols=132  Identities=23%  Similarity=0.129  Sum_probs=77.2

Q ss_pred             CCceEEEEcCCCcchhhhhhhc-----CCCCCceEEeecCCCccc----ccccccCCCCCcEEEccCCCCCCcc-CCC--
Q 048829          699 PSVKVLDVYGCPKLESIAERLD-----NNTSLETINISNCENLKI----LSSGLHNLCQLQQIGIGGCGNLESF-PEG--  766 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~-----~l~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~~~~l~~~-~~~--  766 (976)
                      ++|++|++++|.+.+..+..+.     ..++|++|++++|.....    ++..+..+++|++|++++|. ++.. +..  
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~  362 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELC  362 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHH
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHH
Confidence            5677777777766554433322     235777777777654432    35556667777777777773 3221 111  


Q ss_pred             --C-CCCCCccEEEecCCcCcc----cCCCcCCCCCccceEEEeCCCCCCcccC-------CCCCccceeeecCCCCcc
Q 048829          767 --G-LPCAKLRRLEIYDCKRLE----ALPKGLHNLTSLQQLTIIGGELPSLEED-------GLPTNLHSLRIEGNMGIW  831 (976)
Q Consensus       767 --~-~~~~~L~~L~l~~c~~l~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~  831 (976)
                        + ...++|++|++++|....    .+|..+..+++|++|++++|.+......       ....+|+.|++.++....
T Consensus       363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence              1 124677888888776433    5666666777777787777777643211       112356666665555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.5e-18  Score=197.67  Aligned_cols=237  Identities=11%  Similarity=0.061  Sum_probs=155.3

Q ss_pred             ccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829          532 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI  611 (976)
Q Consensus       532 ~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~  611 (976)
                      .+++|+.|++++|......|..+..+++|++|++++| .++..+....+++|++|++++|. ++.++.            
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------------   97 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLV------------   97 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEE------------
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCC------------
Confidence            3457777777777666655566777777777777773 44433334445555555555554 322221            


Q ss_pred             EEEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccc
Q 048829          612 LKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES  691 (976)
Q Consensus       612 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  691 (976)
                                       .++|+.|++++|... .+  +..                                        
T Consensus        98 -----------------~~~L~~L~L~~N~l~-~~--~~~----------------------------------------  117 (487)
T 3oja_A           98 -----------------GPSIETLHAANNNIS-RV--SCS----------------------------------------  117 (487)
T ss_dssp             -----------------CTTCCEEECCSSCCC-CE--EEC----------------------------------------
T ss_pred             -----------------CCCcCEEECcCCcCC-CC--Ccc----------------------------------------
Confidence                             134666666655321 11  000                                        


Q ss_pred             ccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccccccc-CCCCCcEEEccCCCCCCccCCCCCCC
Q 048829          692 LEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLH-NLCQLQQIGIGGCGNLESFPEGGLPC  770 (976)
Q Consensus       692 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~  770 (976)
                           ..++|+.|++++|.+.+..|..++.+++|++|++++|......|..+. .+++|++|++++|. ++.+|.. ..+
T Consensus       118 -----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~-~~l  190 (487)
T 3oja_A          118 -----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-VVF  190 (487)
T ss_dssp             -----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-CCC
T ss_pred             -----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc-ccC
Confidence                 015678888888888777777788888888888888766655666665 68888888888884 5555543 347


Q ss_pred             CCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC-CCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829          771 AKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY  849 (976)
Q Consensus       771 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  849 (976)
                      ++|+.|++++|. +..+|..+..+++|+.|++++|.+..+|.. ..+++|+.|++++|+.....++   ..+..++.|+.
T Consensus       191 ~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~L~~  266 (487)
T 3oja_A          191 AKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQT  266 (487)
T ss_dssp             TTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHHHHH
T ss_pred             CCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCCCcE
Confidence            788888888887 555666688888888888888888877653 4567888888888887733332   34566777777


Q ss_pred             EEEe
Q 048829          850 LLIR  853 (976)
Q Consensus       850 L~l~  853 (976)
                      ++++
T Consensus       267 l~~~  270 (487)
T 3oja_A          267 VAKQ  270 (487)
T ss_dssp             HHHH
T ss_pred             Eecc
Confidence            7775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=4.5e-18  Score=182.88  Aligned_cols=212  Identities=15%  Similarity=0.129  Sum_probs=114.3

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|.+.+..|..+..+++|++|++++|......+  +..+++|++|++++| .++.++.    .++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEEEC
Confidence            456666666666655555666666666666666643332222  555666666666666 3444432    256666666


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC--CCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL--PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      ++|.... ++.  ..+++|++|++++|.+..++...+  +++|++|++++|.+....+.   .....+++|++|++++  
T Consensus       107 ~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~--  178 (317)
T 3o53_A          107 ANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQY--  178 (317)
T ss_dssp             CSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTT--
T ss_pred             CCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---HHhhccCcCCEEECCC--
Confidence            6665322 221  224556666666666665544322  45666666666665554432   1123556666666666  


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCC-CCcccccceeecC
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK-GLPSSLLQLRIYR  935 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~i~~  935 (976)
                      +.+..++...          .+++|+.|++++ +.++.+|..+..+++|++|++++| .++.+|.. ...++|+.|++++
T Consensus       179 N~l~~~~~~~----------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          179 NFIYDVKGQV----------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             SCCCEEECCC----------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred             CcCccccccc----------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccC
Confidence            2333333322          356666666666 455566555656666666666663 45555542 1235666666666


Q ss_pred             Cc
Q 048829          936 CP  937 (976)
Q Consensus       936 c~  937 (976)
                      |+
T Consensus       247 N~  248 (317)
T 3o53_A          247 NG  248 (317)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=1.7e-17  Score=170.57  Aligned_cols=201  Identities=17%  Similarity=0.186  Sum_probs=137.4

Q ss_pred             CCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccE
Q 048829          698 PPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRR  775 (976)
Q Consensus       698 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~  775 (976)
                      |++|++|++++|.+.+..+..+.++++|++|++++|..++.++ ..+.++++|++|++++|..++.++. .+..+++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3678888888888777666678888888888888876566664 4677788888888887335666654 3456778888


Q ss_pred             EEecCCcCcccCCCcCCCCCccc---eEEEeCC-CCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCccc-EE
Q 048829          776 LEIYDCKRLEALPKGLHNLTSLQ---QLTIIGG-ELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR-YL  850 (976)
Q Consensus       776 L~l~~c~~l~~~~~~l~~l~~L~---~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L  850 (976)
                      |++++|. ++.+|. +..+++|+   +|++++| .+..++.                          ..+.++++|+ +|
T Consensus       110 L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~~~~~l~~L~~~L  161 (239)
T 2xwt_C          110 LGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------------NAFQGLCNETLTL  161 (239)
T ss_dssp             EEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------------TTTTTTBSSEEEE
T ss_pred             EeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCc--------------------------ccccchhcceeEE
Confidence            8888776 445665 66666666   7777776 6665543                          3456677777 77


Q ss_pred             EEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCC-CCCCeEeecCCCCccccCCCCCcccc
Q 048829          851 LIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDL-QNLTKLTLYDCPKLKYFPEKGLPSSL  928 (976)
Q Consensus       851 ~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~L  928 (976)
                      ++++  +.+..+|...        |.. ++|+.|++++|..++.+|. .+..+ ++|+.|++++ +.++.+|.. ..++|
T Consensus       162 ~l~~--n~l~~i~~~~--------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L  228 (239)
T 2xwt_C          162 KLYN--NGFTSVQGYA--------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHL  228 (239)
T ss_dssp             ECCS--CCCCEECTTT--------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTC
T ss_pred             EcCC--CCCcccCHhh--------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccC
Confidence            7776  3455666544        223 6788888888545777765 56677 7888888887 556777765 34578


Q ss_pred             cceeecCCcch
Q 048829          929 LQLRIYRCPLI  939 (976)
Q Consensus       929 ~~L~i~~c~~l  939 (976)
                      +.|++.+|..|
T Consensus       229 ~~L~l~~~~~l  239 (239)
T 2xwt_C          229 KELIARNTWTL  239 (239)
T ss_dssp             SEEECTTC---
T ss_pred             ceeeccCccCC
Confidence            88888777643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.74  E-value=4.6e-19  Score=190.17  Aligned_cols=195  Identities=18%  Similarity=0.149  Sum_probs=106.1

Q ss_pred             CCceEEEEcCCCcchhhhhhh--cCCCCCceEEeecCCCcccccccccCC-----CCCcEEEccCCCCCCccCCCCCCCC
Q 048829          699 PSVKVLDVYGCPKLESIAERL--DNNTSLETINISNCENLKILSSGLHNL-----CQLQQIGIGGCGNLESFPEGGLPCA  771 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~~~  771 (976)
                      ++|++|++++|.+.+.+|..+  ..+++|++|++++|.. +.+|..+..+     ++|++|++++|...+..|..+..++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            567777777777666666654  6677777777776543 3335555554     6677777777643333335556666


Q ss_pred             CccEEEecCCcCccc--CCCcC--CCCCccceEEEeCCCCCCcccC-----CCCCccceeeecCCCCccchhhhcCCccc
Q 048829          772 KLRRLEIYDCKRLEA--LPKGL--HNLTSLQQLTIIGGELPSLEED-----GLPTNLHSLRIEGNMGIWKSMIERGRGFH  842 (976)
Q Consensus       772 ~L~~L~l~~c~~l~~--~~~~l--~~l~~L~~L~l~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  842 (976)
                      +|++|++++|...+.  +|..+  ..+++|++|++++|.+..++..     ..+++|++|++++|.+....+.   ..+.
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~  250 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---PSCD  250 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC---SCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch---hhhh
Confidence            777777777664433  22222  5666666666666666643321     1234555555555555443321   1233


Q ss_pred             ccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecC
Q 048829          843 RFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYD  912 (976)
Q Consensus       843 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~  912 (976)
                      .+++|++|++++  +.+..+|...          . ++|+.|++++ +.++.+|. +..+++|++|++++
T Consensus       251 ~l~~L~~L~Ls~--N~l~~ip~~~----------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          251 WPSQLNSLNLSF--TGLKQVPKGL----------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             CCTTCCEEECTT--SCCSSCCSSC----------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTT
T ss_pred             hcCCCCEEECCC--CccChhhhhc----------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccC
Confidence            445555555555  2333444432          1 4555555555 34555543 45555555555555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=2e-18  Score=185.11  Aligned_cols=129  Identities=19%  Similarity=0.183  Sum_probs=73.4

Q ss_pred             CCceEEEEcCCCcchh--hhhhh--cCCCCCceEEeecCCCcc--ccc-ccccCCCCCcEEEccCCCCCCccC-CCCCCC
Q 048829          699 PSVKVLDVYGCPKLES--IAERL--DNNTSLETINISNCENLK--ILS-SGLHNLCQLQQIGIGGCGNLESFP-EGGLPC  770 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~--~~~~~--~~l~~L~~L~l~~c~~l~--~lp-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~  770 (976)
                      ++|++|++++|+..+.  .+..+  ..+++|++|++++|....  .++ ..+.++++|++|++++|...+..| ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            5566666666665554  23333  666777777777753321  222 223456677777777774333332 223345


Q ss_pred             CCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCc
Q 048829          771 AKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGI  830 (976)
Q Consensus       771 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~  830 (976)
                      ++|++|++++|. ++.+|..+.  ++|++|++++|.|+.+|....+++|++|++++|++.
T Consensus       253 ~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          253 SQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred             CCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence            677777777766 446666554  666677776666666654444555666666555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=1e-17  Score=190.84  Aligned_cols=213  Identities=15%  Similarity=0.121  Sum_probs=136.3

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|+|++|.+.+..|..+..+++|++|++++|......|  +..+++|++|++++| .++.+|.    .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence            467777777777777666777777777777777755433333  667777777777777 4554543    257777777


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      ++|......+   ..+++|+.|++++|.+..++...  .+++|+.|++++|.+....+.   .....+++|++|++++| 
T Consensus       107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~l~~L~~L~Ls~N-  179 (487)
T 3oja_A          107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYN-  179 (487)
T ss_dssp             CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTS-
T ss_pred             cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---HHhhhCCcccEEecCCC-
Confidence            7776433332   23567777777777777665432  356777777777777665542   12236777777777772 


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCC-CCcccccceeecC
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK-GLPSSLLQLRIYR  935 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~i~~  935 (976)
                       .+..++..          ..+++|+.|++++ +.++.+|..+..+++|+.|++++ +.++.+|.. ...++|+.|++++
T Consensus       180 -~l~~~~~~----------~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          180 -FIYDVKGQ----------VVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             -CCCEEECC----------CCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTT
T ss_pred             -cccccccc----------ccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCC
Confidence             34444332          2567777777777 56667766677777777777777 345566653 2246777777777


Q ss_pred             Ccc
Q 048829          936 CPL  938 (976)
Q Consensus       936 c~~  938 (976)
                      |+.
T Consensus       247 N~l  249 (487)
T 3oja_A          247 NGF  249 (487)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=5.2e-17  Score=171.05  Aligned_cols=203  Identities=19%  Similarity=0.145  Sum_probs=159.0

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEE
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL  776 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  776 (976)
                      +|++|++|++++|.+.+..+..+.++++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            45789999999999888777789999999999999975544445678899999999999995444444567789999999


Q ss_pred             EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcc--c-CCCCCccceeeecCCCCccchhhhcCCcccccCccc----E
Q 048829          777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLE--E-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR----Y  849 (976)
Q Consensus       777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----~  849 (976)
                      ++++|......+..+..+++|++|++++|.+..+.  . .+.+++|++|++++|.+.....    ..+..+++|+    .
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLS  181 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEE
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhcccccee
Confidence            99999855544457899999999999999998743  2 3456899999999998877654    3466666666    8


Q ss_pred             EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcccccc-ccCCCCCCeEeecCCCC
Q 048829          850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSS-IVDLQNLTKLTLYDCPK  915 (976)
Q Consensus       850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~  915 (976)
                      |++++  +.+..++...         ....+|+.|++++ +.++.+|.. +..+++|++|++++++.
T Consensus       182 L~ls~--n~l~~~~~~~---------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          182 LDLSL--NPMNFIQPGA---------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             EECCS--SCCCEECTTS---------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             eecCC--CcccccCccc---------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCcc
Confidence            88888  4566666554         2445899999999 568888764 57889999999998653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=1.6e-16  Score=167.79  Aligned_cols=173  Identities=18%  Similarity=0.133  Sum_probs=118.0

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      +.++.|++++|.+.+..+..+..+++|++|++++| .++.++.. ..+++|++|++++| .++.+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence            56788888888877777778888888888888885 45555443 66888888888888 56677777777888888888


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      ++|......+..+..+++|++|++++|.+..++...  .+++|+.|++++|.+.....    ..+.++++|+.|++++  
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~--  181 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQE--  181 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCS--
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH----HHhcCcCCCCEEECCC--
Confidence            888744333456788888888888888888776543  34566666666666554333    3455666666666665  


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeecccc
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFF  889 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  889 (976)
                      +.+..+|...         ...++|+.|+++++
T Consensus       182 N~l~~ip~~~---------~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          182 NSLYTIPKGF---------FGSHLLPFAFLHGN  205 (290)
T ss_dssp             SCCCCCCTTT---------TTTCCCSEEECCSC
T ss_pred             CcCCccChhh---------cccccCCeEEeCCC
Confidence            3455555554         24456666666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=1.1e-16  Score=164.50  Aligned_cols=208  Identities=13%  Similarity=0.246  Sum_probs=136.6

Q ss_pred             CCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc--cCCCCCcEEeeccCcCccc
Q 048829          568 CSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRT  645 (976)
Q Consensus       568 c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~  645 (976)
                      |..++.+|.  .+++|++|++++|. ++.++...+ ..+++|++|++++|..++.++..  ..+++|++|++++|..++.
T Consensus        20 c~~l~~ip~--~~~~l~~L~l~~n~-l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~   95 (239)
T 2xwt_C           20 CKDIQRIPS--LPPSTQTLKLIETH-LRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY   95 (239)
T ss_dssp             ECSCSSCCC--CCTTCCEEEEESCC-CSEECTTTT-TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred             ccCccccCC--CCCcccEEEEeCCc-ceEECHHHc-cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence            344666665  55577777777776 666665444 46777777777776555555542  3455677777766444443


Q ss_pred             cccccc-cccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCC
Q 048829          646 LTVEEG-IQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTS  724 (976)
Q Consensus       646 ~~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~  724 (976)
                      +  +.. +..                                          + ++|++|++++|.+.+ +|. +..+++
T Consensus        96 i--~~~~f~~------------------------------------------l-~~L~~L~l~~n~l~~-lp~-~~~l~~  128 (239)
T 2xwt_C           96 I--DPDALKE------------------------------------------L-PLLKFLGIFNTGLKM-FPD-LTKVYS  128 (239)
T ss_dssp             E--CTTSEEC------------------------------------------C-TTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred             c--CHHHhCC------------------------------------------C-CCCCEEeCCCCCCcc-ccc-cccccc
Confidence            3  211 111                                          1 567777777776655 454 667777


Q ss_pred             Cc---eEEeecCCCccccc-ccccCCCCCc-EEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCC-CcCCCC-Ccc
Q 048829          725 LE---TINISNCENLKILS-SGLHNLCQLQ-QIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALP-KGLHNL-TSL  797 (976)
Q Consensus       725 L~---~L~l~~c~~l~~lp-~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~l~~l-~~L  797 (976)
                      |+   +|++++|..++.+| ..+.++++|+ +|++++| .++.+|...+..++|++|++++|+.++.+| ..+..+ ++|
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence            77   88888874666664 4577788888 8888888 455777665555788888888886455554 456777 888


Q ss_pred             ceEEEeCCCCCCcccCCCCCccceeeecCCC
Q 048829          798 QQLTIIGGELPSLEEDGLPTNLHSLRIEGNM  828 (976)
Q Consensus       798 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~  828 (976)
                      +.|++++|.++.++.. .+++|+.|+++++.
T Consensus       208 ~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          208 SLLDVSQTSVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             SEEECTTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred             cEEECCCCccccCChh-HhccCceeeccCcc
Confidence            8888888888877654 45667777666653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=4e-16  Score=164.68  Aligned_cols=196  Identities=16%  Similarity=0.111  Sum_probs=161.3

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      +++++++++++.+. .+|..+.  ++++.|++++|......|..+..+++|++|++++| .++.++.. ..+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred             CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence            67899999887664 4555443  68999999997665555788999999999999999 56667654 67899999999


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      ++|. ++.+|..+..+++|++|++++|.|+.++..  ..+++|++|++++|.+.....    ..+..+++|+.|++++  
T Consensus        85 s~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~--  157 (290)
T 1p9a_G           85 SHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLAN--  157 (290)
T ss_dssp             CSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTT--
T ss_pred             CCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh----hhcccccCCCEEECCC--
Confidence            9998 678998899999999999999999998764  446899999999998876554    5678899999999998  


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCC
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPK  915 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~  915 (976)
                      +.+..+|...        |..+++|+.|++++ +.++.+|.++...++|++|++++++-
T Consensus       158 N~l~~l~~~~--------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          158 NNLTELPAGL--------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCSCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CcCCccCHHH--------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence            4667777654        35789999999998 68889998888888999999998764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=6.4e-16  Score=168.51  Aligned_cols=237  Identities=16%  Similarity=0.182  Sum_probs=151.2

Q ss_pred             EEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc--cCCCCCcEEeecc
Q 048829          562 EIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQR  639 (976)
Q Consensus       562 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~  639 (976)
                      .++.++ +.++.+|. ..++++++|++++|. ++.++...+ .++++|++|++++|...+.++..  ..+++++.+.+.+
T Consensus        13 ~v~C~~-~~Lt~iP~-~l~~~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQE-SKVTEIPS-DLPRNAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEES-TTCCSCCT-TCCTTCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecC-CCCCccCc-CcCCCCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            344444 45566653 224566666666665 566665544 46666666666666555554433  2333444444444


Q ss_pred             CcCccccccccc-cccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhh
Q 048829          640 CNKIRTLTVEEG-IQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER  718 (976)
Q Consensus       640 ~~~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  718 (976)
                      ++.++.+  +.+ +..+                                           ++|++|++++|.+....+..
T Consensus        89 ~N~l~~l--~~~~f~~l-------------------------------------------~~L~~L~l~~n~l~~~~~~~  123 (350)
T 4ay9_X           89 ANNLLYI--NPEAFQNL-------------------------------------------PNLQYLLISNTGIKHLPDVH  123 (350)
T ss_dssp             ETTCCEE--CTTSBCCC-------------------------------------------TTCCEEEEEEECCSSCCCCT
T ss_pred             CCccccc--Cchhhhhc-------------------------------------------cccccccccccccccCCchh
Confidence            4344333  111 1111                                           56777777777666555555


Q ss_pred             hcCCCCCceEEeecCCCcccccc-cccCC-CCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCC-cCCCCC
Q 048829          719 LDNNTSLETINISNCENLKILSS-GLHNL-CQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPK-GLHNLT  795 (976)
Q Consensus       719 ~~~l~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~  795 (976)
                      +....++..|++.++..++.+|. .+..+ ..+++|++++| .++.+|...+..++|++|++.+|..++.+|. .+..++
T Consensus       124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~  202 (350)
T 4ay9_X          124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS  202 (350)
T ss_dssp             TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred             hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence            66666778888888777777743 44554 46888889888 6777887777777889999988777888886 468888


Q ss_pred             ccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          796 SLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       796 ~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      +|++|++++|.|+.+|... +.+|+.|.+.++...+..+     .+..+++|+.+++++
T Consensus       203 ~L~~LdLs~N~l~~lp~~~-~~~L~~L~~l~~~~l~~lP-----~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          203 GPVILDISRTRIHSLPSYG-LENLKKLRARSTYNLKKLP-----TLEKLVALMEASLTY  255 (350)
T ss_dssp             CCSEEECTTSCCCCCCSSS-CTTCCEEECTTCTTCCCCC-----CTTTCCSCCEEECSC
T ss_pred             ccchhhcCCCCcCccChhh-hccchHhhhccCCCcCcCC-----CchhCcChhhCcCCC
Confidence            9999999998888887643 5667777776666655544     256667777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=9.2e-16  Score=167.27  Aligned_cols=222  Identities=19%  Similarity=0.119  Sum_probs=167.6

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccC-CCCCCCCCcc
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLR  774 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~  774 (976)
                      +|+++++|+|++|++....+.+|.++++|++|+|++|...+.+| ..|.++++|+++.+.++..++.++ ..+..+++|+
T Consensus        28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            35788999999998776556678999999999999987777775 456788888876665555677664 4567788999


Q ss_pred             EEEecCCcCcccCCCcCCCCCccceEEEeC-CCCCCcccCC---CCCccceeeecCCCCccchhhhcCCcccccCcccEE
Q 048829          775 RLEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEEDG---LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL  850 (976)
Q Consensus       775 ~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  850 (976)
                      +|++++|......+..+....++..|++.+ +.+..++...   ....++.|++++|.+.....    . ....++|++|
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~----~-~f~~~~L~~l  182 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN----S-AFNGTQLDEL  182 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT----T-SSTTEEEEEE
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh----h-hccccchhHH
Confidence            999999884433334556677788888877 7788777643   34578889999998875443    2 3355789999


Q ss_pred             EEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccc
Q 048829          851 LIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQ  930 (976)
Q Consensus       851 ~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~  930 (976)
                      ++++ ++.++.+|.+.        |..+++|+.|++++ +.++.+|.+.  +.+|+.|.+.+|+.++.+|.-.-.++|+.
T Consensus       183 ~l~~-~n~l~~i~~~~--------f~~l~~L~~LdLs~-N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP~l~~l~~L~~  250 (350)
T 4ay9_X          183 NLSD-NNNLEELPNDV--------FHGASGPVILDISR-TRIHSLPSYG--LENLKKLRARSTYNLKKLPTLEKLVALME  250 (350)
T ss_dssp             ECTT-CTTCCCCCTTT--------TTTEECCSEEECTT-SCCCCCCSSS--CTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred             hhcc-CCcccCCCHHH--------hccCcccchhhcCC-CCcCccChhh--hccchHhhhccCCCcCcCCCchhCcChhh
Confidence            9988 57888888765        46889999999999 6899998633  67888888888888999987444568888


Q ss_pred             eeecC
Q 048829          931 LRIYR  935 (976)
Q Consensus       931 L~i~~  935 (976)
                      +++.+
T Consensus       251 l~l~~  255 (350)
T 4ay9_X          251 ASLTY  255 (350)
T ss_dssp             EECSC
T ss_pred             CcCCC
Confidence            88754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=9.3e-16  Score=160.62  Aligned_cols=177  Identities=20%  Similarity=0.246  Sum_probs=97.3

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRL  776 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L  776 (976)
                      +++++|++++|.+.+..+..+..+++|++|++++|. ++.+| ..+..+++|++|++++|. ++.+|. .+..+++|++|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence            456666666666555545556666666666666643 33332 334556666666666663 333433 23445566666


Q ss_pred             EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      ++++|......+..+..+++|++|++++|.+..++.                          ..+..+++|++|++++  
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------~~~~~l~~L~~L~L~~--  166 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------------------------GVFDKLTSLKELRLYN--  166 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCS--
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH--------------------------hHccCCcccceeEecC--
Confidence            666655333333345555666666665555555443                          3355566666666665  


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~  914 (976)
                      +.+..++...        |..+++|+.|++++ +.++.+|. .+..+++|+.|++++|+
T Consensus       167 n~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          167 NQLKRVPEGA--------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCSCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCcEeChhH--------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence            2344444332        24566666666666 35556655 35566677777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=7.6e-16  Score=162.13  Aligned_cols=204  Identities=19%  Similarity=0.224  Sum_probs=159.7

Q ss_pred             hhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCCcCC
Q 048829          714 SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLH  792 (976)
Q Consensus       714 ~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~l~  792 (976)
                      .+|..+.  ++|++|++++|......+..+.++++|++|++++| .++.++. .+..+++|++|++++|......+..+.
T Consensus        21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            3444332  47999999997544444558899999999999999 5555554 577899999999999996555567899


Q ss_pred             CCCccceEEEeCCCCCCccc--CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccc
Q 048829          793 NLTSLQQLTIIGGELPSLEE--DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRR  870 (976)
Q Consensus       793 ~l~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~  870 (976)
                      .+++|++|++++|.+..++.  .+.+++|++|++++|.+.....+   ..+.++++|++|++++  +.+..++...    
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~---~~~~~l~~L~~L~Ls~--N~l~~~~~~~----  168 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSS--NKIQSIYCTD----  168 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC---GGGGGCTTCCEEECCS--SCCCEECGGG----
T ss_pred             CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc---hhhccCCCCCEEECCC--CCCCcCCHHH----
Confidence            99999999999999998876  34578999999999998764322   4688999999999999  3455554332    


Q ss_pred             cCCCCCCccccc----eeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCC--cccccceeecC
Q 048829          871 LGTTLPLPASLT----SLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGL--PSSLLQLRIYR  935 (976)
Q Consensus       871 ~~~~~~~l~~L~----~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~i~~  935 (976)
                          +..+++|+    .|++++ +.++.++.......+|++|++++| .++.++...+  .++|++|++++
T Consensus       169 ----~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          169 ----LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             ----GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred             ----hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence                23556666    899999 688888887666779999999995 5888887544  47999999994

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=2.6e-15  Score=157.21  Aligned_cols=172  Identities=26%  Similarity=0.333  Sum_probs=108.8

Q ss_pred             CCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccC--CCCCccceee
Q 048829          748 QLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLR  823 (976)
Q Consensus       748 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~  823 (976)
                      +|++|++++|. ++.++. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+..++..  ..+++|++|+
T Consensus        38 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           38 DTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            44444444442 223322 23344445555554444 223332 234445555555555555444432  2234555555


Q ss_pred             ecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCC
Q 048829          824 IEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDL  902 (976)
Q Consensus       824 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l  902 (976)
                      +++|.+....+    ..+..+++|++|++++  +.+..++...        |..+++|+.|++++ +.++.++. .+..+
T Consensus       116 l~~n~l~~~~~----~~~~~l~~L~~L~Ls~--n~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          116 LDRNQLKSLPP----RVFDSLTKLTYLSLGY--NELQSLPKGV--------FDKLTSLKELRLYN-NQLKRVPEGAFDKL  180 (270)
T ss_dssp             CCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTC
T ss_pred             CCCCccCeeCH----HHhCcCcCCCEEECCC--CcCCccCHhH--------ccCCcccceeEecC-CcCcEeChhHhccC
Confidence            55555444333    4578899999999999  3566676653        36899999999999 57888876 57889


Q ss_pred             CCCCeEeecCCCCccccCCCCC--cccccceeecCCc
Q 048829          903 QNLTKLTLYDCPKLKYFPEKGL--PSSLLQLRIYRCP  937 (976)
Q Consensus       903 ~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~i~~c~  937 (976)
                      ++|++|++++| .++.++...+  .++|+.|++++||
T Consensus       181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          181 TELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            99999999995 6788887655  4789999998865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.66  E-value=3e-16  Score=168.11  Aligned_cols=203  Identities=12%  Similarity=0.061  Sum_probs=95.7

Q ss_pred             CCCceEEeecCCCcccccccc--cCCCCCcEEEccCCCCCCccC----CCCCCCCCccEEEecCCcCcccCCCcCCCCCc
Q 048829          723 TSLETINISNCENLKILSSGL--HNLCQLQQIGIGGCGNLESFP----EGGLPCAKLRRLEIYDCKRLEALPKGLHNLTS  796 (976)
Q Consensus       723 ~~L~~L~l~~c~~l~~lp~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~  796 (976)
                      ++|++|++++|...+..|..+  ..+++|++|++++|......+    ..+..+++|++|++++|......|..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            335555555544333444443  444555555555543322221    01123445555555555533333344455555


Q ss_pred             cceEEEeCCCCCC---cccC---CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccc
Q 048829          797 LQQLTIIGGELPS---LEED---GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRR  870 (976)
Q Consensus       797 L~~L~l~~~~l~~---~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~  870 (976)
                      |++|++++|.+..   ++..   +.+++|++|++++|.+....... .+.+..+++|++|++++ |......|....   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~---  245 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AALAAAGVQPHSLDLSH-NSLRATVNPSAP---  245 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HHHHHHTCCCSSEECTT-SCCCCCCCSCCS---
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HHHHhcCCCCCEEECCC-CCCCccchhhHH---
Confidence            5555555554432   1111   23345555555555543221100 01234556666666666 222223344431   


Q ss_pred             cCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCCc
Q 048829          871 LGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCP  937 (976)
Q Consensus       871 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~  937 (976)
                         .+..+++|++|++++ +.++.+|..+.  ++|++|++++ ++++.+|...-.++|++|++++++
T Consensus       246 ---~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          246 ---RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             ---SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTT
T ss_pred             ---hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCC
Confidence               111235677777766 45666666553  5677777776 345555443334566777776664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=6.6e-16  Score=165.46  Aligned_cols=197  Identities=18%  Similarity=0.110  Sum_probs=159.6

Q ss_pred             CCceEEEEcCCCcchhhhhhh--cCCCCCceEEeecCCCccccc----ccccCCCCCcEEEccCCCCCCccCCCCCCCCC
Q 048829          699 PSVKVLDVYGCPKLESIAERL--DNNTSLETINISNCENLKILS----SGLHNLCQLQQIGIGGCGNLESFPEGGLPCAK  772 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~lp----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~  772 (976)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|......+    ..+..+++|++|++++|......+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            569999999999999998888  899999999999987665433    34457999999999999665555567778999


Q ss_pred             ccEEEecCCcCccc--CC--CcCCCCCccceEEEeCCCCCCcccC-----CCCCccceeeecCCCCccchhhhcCCcccc
Q 048829          773 LRRLEIYDCKRLEA--LP--KGLHNLTSLQQLTIIGGELPSLEED-----GLPTNLHSLRIEGNMGIWKSMIERGRGFHR  843 (976)
Q Consensus       773 L~~L~l~~c~~l~~--~~--~~l~~l~~L~~L~l~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  843 (976)
                      |++|++++|...+.  ++  ..+..+++|++|++++|.++.++..     +.+++|++|++++|.+....+    ..+..
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----~~~~~  246 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN----PSAPR  246 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC----SCCSS
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch----hhHHh
Confidence            99999999986542  32  3447899999999999999877642     346899999999999887654    23444


Q ss_pred             c---CcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829          844 F---SSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       844 l---~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~  914 (976)
                      +   ++|++|++++  +.+..+|...           .++|+.|++++ +.++.+|. +..+++|+.|++++++
T Consensus       247 ~~~~~~L~~L~Ls~--N~l~~lp~~~-----------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          247 CMWSSALNSLNLSF--AGLEQVPKGL-----------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCTTCCCEECCS--SCCCSCCSCC-----------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred             ccCcCcCCEEECCC--CCCCchhhhh-----------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence            4   7999999998  4566787754           38999999999 68888874 7889999999999965

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.63  E-value=5.3e-16  Score=162.60  Aligned_cols=130  Identities=18%  Similarity=0.114  Sum_probs=85.0

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~  777 (976)
                      ++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|. ++.++.. +..+++|++|+
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEE
Confidence            566666776666665556667777777777777764333334445677778888888774 4444433 45677788888


Q ss_pred             ecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchh
Q 048829          778 IYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSM  834 (976)
Q Consensus       778 l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~  834 (976)
                      +++|...+..+..+..+++|+.|++++|.+..     .+++|+.++++.|......+
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHHHTGGGBB
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----cCcHHHHHHHHHHhCCCccc
Confidence            88777544444456777778888777776542     34567777777776665554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.63  E-value=1.2e-15  Score=162.69  Aligned_cols=194  Identities=17%  Similarity=0.233  Sum_probs=160.2

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|.+.. ++ .+..+++|++|++++| .++.++. +..+++|++|++++|. ++.++ .+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence            689999999997655 44 5888999999999996 5566655 8899999999999995 66665 4677899999999


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD  858 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~  858 (976)
                      ++|. +..++. +..+++|++|++++|.+..++....+++|+.|++++|.+.....      +..+++|+.|++++|  .
T Consensus       115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n--~  184 (308)
T 1h6u_A          115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDN--K  184 (308)
T ss_dssp             TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSS--C
T ss_pred             CCCC-CCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCC--c
Confidence            9998 555654 89999999999999999998877778999999999998765432      788999999999993  4


Q ss_pred             CccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCC
Q 048829          859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPE  921 (976)
Q Consensus       859 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~  921 (976)
                      +..++.          +..+++|+.|++++ +.++.++ .+..+++|+.|++++|+ ++..|.
T Consensus       185 l~~~~~----------l~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          185 ISDISP----------LASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQT-ITNQPV  234 (308)
T ss_dssp             CCCCGG----------GGGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred             cCcChh----------hcCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence            555543          25789999999999 5788888 48899999999999954 565544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=3.5e-15  Score=156.31  Aligned_cols=149  Identities=21%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~  777 (976)
                      ++|++|++++|.+.+.  ..+..+++|++|++++|......+..+..+++|++|++++|. ++.++. .+..+++|++|+
T Consensus        63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEE
Confidence            4445555555444331  234455555555555543222223334455555555555553 222322 234445555555


Q ss_pred             ecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          778 IYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       778 l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      +++|...+..+..+..+++|++|++++|.+..++..  +.+++|+.|++++|.+....+    ..+..+++|++|++++
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCEEEccC
Confidence            555542222222334555555555555555544432  123344444444443333222    2234444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=2.2e-15  Score=160.81  Aligned_cols=194  Identities=15%  Similarity=0.160  Sum_probs=151.3

Q ss_pred             CCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccccc
Q 048829          663 SLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSG  742 (976)
Q Consensus       663 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~  742 (976)
                      ++|+.|++++|. ++. ++  .+         .. .++|++|++++|.+.+..+  +..+++|++|++++|. ++.++ .
T Consensus        41 ~~L~~L~l~~~~-i~~-l~--~~---------~~-l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~  102 (308)
T 1h6u_A           41 DGITTLSAFGTG-VTT-IE--GV---------QY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-A  102 (308)
T ss_dssp             HTCCEEECTTSC-CCC-CT--TG---------GG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-G
T ss_pred             CCcCEEEeeCCC-ccC-ch--hh---------hc-cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-h
Confidence            789999998873 332 11  11         12 2789999999998766544  8999999999999965 55665 5


Q ss_pred             ccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCcccee
Q 048829          743 LHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSL  822 (976)
Q Consensus       743 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L  822 (976)
                      +..+++|++|++++| .++.++. +..+++|++|++++|. +..++. +..+++|+.|++++|.+..++....+++|+.|
T Consensus       103 ~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L  178 (308)
T 1h6u_A          103 IAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL  178 (308)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             hcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEE
Confidence            788999999999999 4566664 6778999999999997 555554 88899999999999999988877778899999


Q ss_pred             eecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc
Q 048829          823 RIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS  897 (976)
Q Consensus       823 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  897 (976)
                      ++++|.+....+      +..+++|++|++++|  .+..++.          +..+++|+.|++++ +.++..|.
T Consensus       179 ~l~~n~l~~~~~------l~~l~~L~~L~L~~N--~l~~~~~----------l~~l~~L~~L~l~~-N~i~~~~~  234 (308)
T 1h6u_A          179 KADDNKISDISP------LASLPNLIEVHLKNN--QISDVSP----------LANTSNLFIVTLTN-QTITNQPV  234 (308)
T ss_dssp             ECCSSCCCCCGG------GGGCTTCCEEECTTS--CCCBCGG----------GTTCTTCCEEEEEE-EEEECCCE
T ss_pred             ECCCCccCcChh------hcCCCCCCEEEccCC--ccCcccc----------ccCCCCCCEEEccC-CeeecCCe
Confidence            999998866433      678999999999983  4444442          25889999999999 56777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.60  E-value=1.6e-16  Score=173.03  Aligned_cols=84  Identities=17%  Similarity=0.227  Sum_probs=41.2

Q ss_pred             CCceEEEEcCC-Ccchh-hhhhhcCCC-CCceEEeecCC-Cc--ccccccccCCCCCcEEEccCCCCCC-ccCCCCCCCC
Q 048829          699 PSVKVLDVYGC-PKLES-IAERLDNNT-SLETINISNCE-NL--KILSSGLHNLCQLQQIGIGGCGNLE-SFPEGGLPCA  771 (976)
Q Consensus       699 ~~L~~L~L~~~-~~~~~-~~~~~~~l~-~L~~L~l~~c~-~l--~~lp~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~  771 (976)
                      ++|++|++++| .+.+. ++..+..++ +|++|++++|. .+  ..+|..+..+++|++|++++|..++ ..+..+..++
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            44555555555 33332 344455555 55555555553 22  2334444455555555555554332 2333344455


Q ss_pred             CccEEEecCCc
Q 048829          772 KLRRLEIYDCK  782 (976)
Q Consensus       772 ~L~~L~l~~c~  782 (976)
                      +|++|++++|.
T Consensus       248 ~L~~L~l~~~~  258 (336)
T 2ast_B          248 YLQHLSLSRCY  258 (336)
T ss_dssp             TCCEEECTTCT
T ss_pred             CCCEeeCCCCC
Confidence            55555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=2.3e-16  Score=171.71  Aligned_cols=108  Identities=17%  Similarity=0.295  Sum_probs=50.1

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccc--ccccccCCCCCcEEEccCCCCCCc--cCCCCCCCC-Cc
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKI--LSSGLHNLCQLQQIGIGGCGNLES--FPEGGLPCA-KL  773 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~-~L  773 (976)
                      ++|++|++++|...+..+..+..+++|++|++++|..++.  ++..+.++++|++|++++|..++.  ++..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            4455555555554445555555555555555555533332  344444555555555555533332  232233344 55


Q ss_pred             cEEEecCCc-Cc--ccCCCcCCCCCccceEEEeCCC
Q 048829          774 RRLEIYDCK-RL--EALPKGLHNLTSLQQLTIIGGE  806 (976)
Q Consensus       774 ~~L~l~~c~-~l--~~~~~~l~~l~~L~~L~l~~~~  806 (976)
                      ++|++++|. .+  ..+|..+..+++|++|++++|.
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            555555553 11  2233333444444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.56  E-value=5.5e-14  Score=145.28  Aligned_cols=175  Identities=18%  Similarity=0.209  Sum_probs=84.9

Q ss_pred             CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829          700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY  779 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  779 (976)
                      ..++++++++... .+|..+.  +++++|++++|...+..+..+.++++|++|++++|......+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3455555554332 2333222  345555555543333334445555555555555553222222233445555555555


Q ss_pred             CCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCC
Q 048829          780 DCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDM  859 (976)
Q Consensus       780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~  859 (976)
                      +|......+..+..+++|++|++++|.|+.++.                          ..+..+++|++|++++  +.+
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~~l~~L~~L~Ls~--N~l  143 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS--------------------------GVFDRLTKLKELRLNT--NQL  143 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCS--SCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcCh--------------------------hHhccCCcccEEECcC--CcC
Confidence            555332222344555555555555555554443                          2345555666666665  234


Q ss_pred             ccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829          860 VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       860 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~  914 (976)
                      ..++...        |..+++|+.|++++ +.++.+|. .+..+++|++|++++|+
T Consensus       144 ~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          144 QSIPAGA--------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCHHH--------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            4444322        23556666666666 45555544 45556666666666644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=6.5e-14  Score=160.23  Aligned_cols=188  Identities=18%  Similarity=0.212  Sum_probs=131.0

Q ss_pred             CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829          700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY  779 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  779 (976)
                      +++.|++++|.+.+ +|..+  +++|++|++++| .++.+|   ..+++|++|++++| .++.+|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence            67888888877655 55544  367888888885 455677   34788888888888 5555776 433  88888888


Q ss_pred             CCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCC
Q 048829          780 DCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDM  859 (976)
Q Consensus       780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~  859 (976)
                      +|. ++.+|.   .+++|+.|++++|.|+.++.  .+++|+.|++++|.+.. .+    . +.  ++|+.|++++  +.+
T Consensus       129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~-lp----~-l~--~~L~~L~Ls~--N~L  192 (571)
T 3cvr_A          129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF-LP----E-LP--ESLEALDVST--NLL  192 (571)
T ss_dssp             SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-CC----C-CC--TTCCEEECCS--SCC
T ss_pred             CCc-CCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC-cc----h-hh--CCCCEEECcC--CCC
Confidence            887 455766   57888888888888888776  56788888888887765 22    2 33  7888888888  356


Q ss_pred             ccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccC
Q 048829          860 VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFP  920 (976)
Q Consensus       860 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~  920 (976)
                      ..+|. +..    ..+...+.|+.|++++ |.++.||..+..+++|+.|++++|+..+.+|
T Consensus       193 ~~lp~-~~~----~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          193 ESLPA-VPV----RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             SSCCC-CC------------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             Cchhh-HHH----hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            67776 420    0001122338888888 6888888878788888888888866544433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.52  E-value=1e-13  Score=143.33  Aligned_cols=152  Identities=21%  Similarity=0.267  Sum_probs=115.6

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccC-CCCCCCCCccE
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRR  775 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~  775 (976)
                      +|+.++.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|. ++.+| ..+..+++|++
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence            34789999999999999888899999999999999976555557778999999999999995 45555 45677899999


Q ss_pred             EEecCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEE
Q 048829          776 LEIYDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLI  852 (976)
Q Consensus       776 L~l~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  852 (976)
                      |++++|. ++.+|. .+..+++|++|++++|.+..++..  +.+++|+.|++++|.+....+    ..+..+++|+.|++
T Consensus       112 L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l  186 (251)
T 3m19_A          112 LYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITL  186 (251)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEEC
T ss_pred             EEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEe
Confidence            9999998 455554 568999999999999999988763  234556666666665554333    33455555555555


Q ss_pred             ec
Q 048829          853 RG  854 (976)
Q Consensus       853 ~~  854 (976)
                      ++
T Consensus       187 ~~  188 (251)
T 3m19_A          187 FG  188 (251)
T ss_dssp             CS
T ss_pred             eC
Confidence            55

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.50  E-value=6.1e-14  Score=148.08  Aligned_cols=168  Identities=18%  Similarity=0.269  Sum_probs=107.4

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeec
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNN  199 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  199 (976)
                      .+++|++|++++|.+..++ .+..+++|++|+|++|.+..+|. ++++++|++|++++ +.+..+|. ++.+++|++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG-GTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh-hccCCCCCEEEC
Confidence            6777778888887777774 47777888888888887777765 77788888888877 35666553 777788888888


Q ss_pred             CCCCCccccccccCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhccCCCCCCceEEEEE
Q 048829          200 SNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW  279 (976)
Q Consensus       200 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (976)
                      ++|. +..+ ..++.+++|++|++..                                                      
T Consensus       120 ~~n~-i~~~-~~l~~l~~L~~L~l~~------------------------------------------------------  143 (291)
T 1h6t_A          120 EHNG-ISDI-NGLVHLPQLESLYLGN------------------------------------------------------  143 (291)
T ss_dssp             TTSC-CCCC-GGGGGCTTCCEEECCS------------------------------------------------------
T ss_pred             CCCc-CCCC-hhhcCCCCCCEEEccC------------------------------------------------------
Confidence            8776 5554 2455555555553211                                                      


Q ss_pred             ccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceEE
Q 048829          280 TRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLT  359 (976)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~  359 (976)
                      +...             .+..+..+++|+.|+++++....++. +..  +++|+.|++++|... .++.+..+++|+.|+
T Consensus       144 n~l~-------------~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~--l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~  206 (291)
T 1h6t_A          144 NKIT-------------DITVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHIS-DLRALAGLKNLDVLE  206 (291)
T ss_dssp             SCCC-------------CCGGGGGCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCC-BCGGGTTCTTCSEEE
T ss_pred             CcCC-------------cchhhccCCCCCEEEccCCccccchh-hcC--CCccCEEECCCCcCC-CChhhccCCCCCEEE
Confidence            1110             00122334555666666665555544 322  677777777777643 355677777888888


Q ss_pred             EeCCC
Q 048829          360 VRGVS  364 (976)
Q Consensus       360 L~~~~  364 (976)
                      +++|.
T Consensus       207 l~~n~  211 (291)
T 1h6t_A          207 LFSQE  211 (291)
T ss_dssp             EEEEE
T ss_pred             CcCCc
Confidence            87753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.49  E-value=2.3e-15  Score=167.00  Aligned_cols=114  Identities=15%  Similarity=0.146  Sum_probs=61.3

Q ss_pred             CCCCccceEEEeCCCCCC------cc-cCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCcc---
Q 048829          792 HNLTSLQQLTIIGGELPS------LE-EDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVS---  861 (976)
Q Consensus       792 ~~l~~L~~L~l~~~~l~~------~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~---  861 (976)
                      ..+++|++|++++|.+..      ++ ....+++|+.|++++|.+........+..+..+++|++|++++| . +..   
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~-i~~~~~  261 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-L-LSARGA  261 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-C-CCHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC-C-CchhhH
Confidence            344455555555554441      11 12234455555555555431100000034567777777777773 2 221   


Q ss_pred             --CCCCCcccccCCCCCCccccceeeccccCCCcc-----ccccc-cCCCCCCeEeecCCCC
Q 048829          862 --FPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES-----LSSSI-VDLQNLTKLTLYDCPK  915 (976)
Q Consensus       862 --~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~l-~~l~~L~~L~l~~c~~  915 (976)
                        ++....       ...+++|++|++++| .++.     +|..+ .++++|++|++++|+.
T Consensus       262 ~~l~~~l~-------~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          262 AAVVDAFS-------KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHH-------TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHh-------hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence              121110       013678888888884 5555     77766 5688999999998653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.48  E-value=7.3e-14  Score=147.50  Aligned_cols=166  Identities=19%  Similarity=0.247  Sum_probs=83.0

Q ss_pred             CCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEE
Q 048829          722 NTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLT  801 (976)
Q Consensus       722 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~  801 (976)
                      +++|++|++++| .++.++ .+..+++|++|++++| .++.++. +..+++|++|++++|. ++.+| .+..+++|++|+
T Consensus        45 l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence            334444444443 223332 2344455555555554 2333332 3444455555555544 23332 244555555555


Q ss_pred             EeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCcccc
Q 048829          802 IIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASL  881 (976)
Q Consensus       802 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L  881 (976)
                      +++|.+..++....+++|+.|++++|.+...      ..+..+++|+.|++++|  .+..++. .         ..+++|
T Consensus       119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l~~L  180 (291)
T 1h6t_A          119 LEHNGISDINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN--QISDIVP-L---------AGLTKL  180 (291)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS--CCCCCGG-G---------TTCTTC
T ss_pred             CCCCcCCCChhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCC--ccccchh-h---------cCCCcc
Confidence            5555555544444445555555555554433      12456666666666662  3333322 2         356666


Q ss_pred             ceeeccccCCCccccccccCCCCCCeEeecCC
Q 048829          882 TSLSIAFFPNLESLSSSIVDLQNLTKLTLYDC  913 (976)
Q Consensus       882 ~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c  913 (976)
                      +.|++++ +.++.++ .+..+++|+.|++++|
T Consensus       181 ~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          181 QNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CEEECCS-SCCCBCG-GGTTCTTCSEEEEEEE
T ss_pred             CEEECCC-CcCCCCh-hhccCCCCCEEECcCC
Confidence            7777766 4666665 3666677777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.48  E-value=1.3e-15  Score=167.02  Aligned_cols=156  Identities=12%  Similarity=0.018  Sum_probs=65.2

Q ss_pred             CCceEEEEcCCCcchhhhhh----hcCC-CCCceEEeecCCCccccccc----ccC-CCCCcEEEccCCCCCC----ccC
Q 048829          699 PSVKVLDVYGCPKLESIAER----LDNN-TSLETINISNCENLKILSSG----LHN-LCQLQQIGIGGCGNLE----SFP  764 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~----~~~l-~~L~~L~l~~c~~l~~lp~~----~~~-l~~L~~L~l~~~~~l~----~~~  764 (976)
                      ++|++|++++|.+.+..+..    +..+ ++|++|++++|......+..    +.. .++|++|++++|..-.    .++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            45566666666554443332    2333 55666666654432221211    222 2356666666552211    111


Q ss_pred             CCCCCCC-CccEEEecCCcCcccCCC----cCCCC-CccceEEEeCCCCCCc-----ccC--CCCCccceeeecCCCCcc
Q 048829          765 EGGLPCA-KLRRLEIYDCKRLEALPK----GLHNL-TSLQQLTIIGGELPSL-----EED--GLPTNLHSLRIEGNMGIW  831 (976)
Q Consensus       765 ~~~~~~~-~L~~L~l~~c~~l~~~~~----~l~~l-~~L~~L~l~~~~l~~~-----~~~--~~~~~L~~L~l~~~~~~~  831 (976)
                      ..+..++ +|++|++++|......+.    .+..+ ++|++|++++|.|...     +..  ..+++|++|++++|.+..
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            1112222 555555555553222222    22223 3555555555555541     110  112345555555554443


Q ss_pred             chhhhcCCcccccCcccEEEEec
Q 048829          832 KSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       832 ~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      .........+..+++|++|++++
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             HHHHHHHHHHhcCCCccEEEecc
Confidence            32211112234444555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=2.3e-13  Score=134.64  Aligned_cols=146  Identities=13%  Similarity=0.127  Sum_probs=104.8

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|.+. .++ .+..+++|++|++++| .+..++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            57888888888766 444 5778888888888887 444443 6777888888888888555556667777888888888


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCC-CCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGE-LPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      ++|......|..+..+++|++|++++|. +..++....+++|+.|++++|.+....      .+..+++|++|++++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECB
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeC
Confidence            8888665566777888888888888876 777765555666777777776655422      245666666666666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.46  E-value=2.8e-15  Score=166.25  Aligned_cols=226  Identities=15%  Similarity=0.090  Sum_probs=164.1

Q ss_pred             CCceEEEEcCCCcchhhh----hhhcCCCCCceEEeecCC--Ccc-cccccc-------cCCCCCcEEEccCCCCCC---
Q 048829          699 PSVKVLDVYGCPKLESIA----ERLDNNTSLETINISNCE--NLK-ILSSGL-------HNLCQLQQIGIGGCGNLE---  761 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~l~~c~--~l~-~lp~~~-------~~l~~L~~L~l~~~~~l~---  761 (976)
                      ++|++|+|++|.+....+    ..+..+++|++|++++|.  .+. .+|..+       ..+++|++|++++|..-.   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            679999999998877644    457789999999999973  222 334444       689999999999995444   


Q ss_pred             -ccCCCCCCCCCccEEEecCCcCccc----CCCcCCCC---------CccceEEEeCCCCCC--ccc----CCCCCccce
Q 048829          762 -SFPEGGLPCAKLRRLEIYDCKRLEA----LPKGLHNL---------TSLQQLTIIGGELPS--LEE----DGLPTNLHS  821 (976)
Q Consensus       762 -~~~~~~~~~~~L~~L~l~~c~~l~~----~~~~l~~l---------~~L~~L~l~~~~l~~--~~~----~~~~~~L~~  821 (976)
                       .+|..+..+++|++|++++|.....    ++..+..+         ++|++|++++|.+..  ++.    ...+++|+.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             2555566789999999999985322    33334444         899999999999873  221    124679999


Q ss_pred             eeecCCCCccchhhhc-CCcccccCcccEEEEeccCCCC-----ccCCCCCcccccCCCCCCccccceeeccccCCCcc-
Q 048829          822 LRIEGNMGIWKSMIER-GRGFHRFSSLRYLLIRGCDDDM-----VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES-  894 (976)
Q Consensus       822 L~l~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~~~-----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-  894 (976)
                      |++++|.+........ +..+..+++|++|++++|  .+     ..+|...         ..+++|+.|++++| .++. 
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l---------~~~~~L~~L~L~~n-~i~~~  259 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIAL---------KSWPNLRELGLNDC-LLSAR  259 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHG---------GGCTTCCEEECTTC-CCCHH
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHH---------ccCCCcCEEECCCC-CCchh
Confidence            9999998874321100 036789999999999993  33     4444433         57899999999996 4554 


Q ss_pred             ----cccccc--CCCCCCeEeecCCCCccc-----cCCCC--CcccccceeecCCc
Q 048829          895 ----LSSSIV--DLQNLTKLTLYDCPKLKY-----FPEKG--LPSSLLQLRIYRCP  937 (976)
Q Consensus       895 ----l~~~l~--~l~~L~~L~l~~c~~l~~-----i~~~~--~~~~L~~L~i~~c~  937 (976)
                          ++..+.  .+++|++|++++|. ++.     ++...  -.++|++|++++|+
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence                455663  48999999999965 454     65532  13799999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.44  E-value=7.8e-13  Score=130.83  Aligned_cols=81  Identities=19%  Similarity=0.265  Sum_probs=38.9

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|.+.+..+..+..+++|++|++++|..++.+| .+..+++|++|++++| .++.++ .+..+++|++|++
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEE
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEe
Confidence            445555555555555455555555555555555544344444 3444555555555555 233333 2333444444444


Q ss_pred             cCCc
Q 048829          779 YDCK  782 (976)
Q Consensus       779 ~~c~  782 (976)
                      ++|+
T Consensus       189 ~~N~  192 (197)
T 4ezg_A          189 FSQT  192 (197)
T ss_dssp             CBC-
T ss_pred             eCcc
Confidence            4443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=5.8e-13  Score=133.23  Aligned_cols=161  Identities=19%  Similarity=0.191  Sum_probs=93.2

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRL  776 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L  776 (976)
                      ++|++|++++|.+.+..+..+..+++|++|++++|. ++.+ +..+..+++|++|++++| .++.++.. +..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence            567777777776665555556667777777777643 3333 334556666777777666 34444433 3456666666


Q ss_pred             EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      ++++|......+..+..+++|++|++++|.+..++.                          ..+..+++|++|+++++ 
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------------------------~~~~~l~~L~~L~l~~N-  158 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--------------------------GVFDRLTSLQYIWLHDN-  158 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------------------------TTTTTCTTCCEEECCSC-
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH--------------------------HHhccCCCccEEEecCC-
Confidence            666665332222335566666666666665555443                          33556667777777662 


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCC
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQN  904 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~  904 (976)
                      ...                ..+++|+.|+++.+..-+.+|..++.++.
T Consensus       159 ~~~----------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          159 PWD----------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CBC----------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             Cee----------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            110                24566777777775555677766665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.43  E-value=4.3e-15  Score=162.90  Aligned_cols=229  Identities=17%  Similarity=0.137  Sum_probs=159.3

Q ss_pred             CCCCCceEEEEcCCCcchhhh----hhhcCCC-CCceEEeecCCCcccccccccCC-----CCCcEEEccCCCCCCccC-
Q 048829          696 NLPPSVKVLDVYGCPKLESIA----ERLDNNT-SLETINISNCENLKILSSGLHNL-----CQLQQIGIGGCGNLESFP-  764 (976)
Q Consensus       696 ~~~~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~c~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~~~-  764 (976)
                      ..+++|++|++++|.+.+..+    ..+..++ +|++|++++|......+..+..+     ++|++|++++|. ++..+ 
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~   97 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS   97 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence            455779999999999877666    7788898 89999999985554445555553     999999999995 44332 


Q ss_pred             CC----CCCC-CCccEEEecCCcCcccCCCc----CCC-CCccceEEEeCCCCCCcccC-------CCCCccceeeecCC
Q 048829          765 EG----GLPC-AKLRRLEIYDCKRLEALPKG----LHN-LTSLQQLTIIGGELPSLEED-------GLPTNLHSLRIEGN  827 (976)
Q Consensus       765 ~~----~~~~-~~L~~L~l~~c~~l~~~~~~----l~~-l~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~  827 (976)
                      ..    +..+ ++|++|++++|......+..    +.. .++|++|++++|.+......       ..+++|++|++++|
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            21    2233 79999999999943333322    344 36999999999998853321       23459999999999


Q ss_pred             CCccchhhhcCCccccc-CcccEEEEeccCCCCcc-----CCCCCcccccCCCCCCccccceeeccccCCCccccc----
Q 048829          828 MGIWKSMIERGRGFHRF-SSLRYLLIRGCDDDMVS-----FPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS----  897 (976)
Q Consensus       828 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~~~~~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~----  897 (976)
                      .+....+......+..+ ++|++|++++|  .+..     ++....        ...++|++|++++ +.++..+.    
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~--------~~~~~L~~L~Ls~-N~l~~~~~~~l~  246 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS--------SIPNHVVSLNLCL-NCLHGPSLENLK  246 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH--------HSCTTCCEEECCS-SCCCCCCHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh--------cCCCCceEEECcC-CCCCcHHHHHHH
Confidence            88766553222234556 59999999993  3443     222221        1246999999999 56766543    


Q ss_pred             -cccCCCCCCeEeecCCCCccccCC-------CCC--cccccceeecCCc
Q 048829          898 -SIVDLQNLTKLTLYDCPKLKYFPE-------KGL--PSSLLQLRIYRCP  937 (976)
Q Consensus       898 -~l~~l~~L~~L~l~~c~~l~~i~~-------~~~--~~~L~~L~i~~c~  937 (976)
                       .+..+++|++|++++|. +..+..       ..+  .++|++|++++++
T Consensus       247 ~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          247 LLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence             45778999999999965 222221       112  3679999999986

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.43  E-value=1.2e-12  Score=149.92  Aligned_cols=177  Identities=25%  Similarity=0.314  Sum_probs=143.9

Q ss_pred             CCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEE
Q 048829          723 TSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTI  802 (976)
Q Consensus       723 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l  802 (976)
                      .+|+.|++++| .++.+|..+  +++|++|++++| .++.+|   ..+++|+.|++++|. ++.+|. +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEEC
Confidence            38999999996 466688766  489999999999 566888   346899999999997 555887 655  9999999


Q ss_pred             eCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccc
Q 048829          803 IGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLT  882 (976)
Q Consensus       803 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~  882 (976)
                      ++|.|+.+|.  .+++|+.|++++|.+.. .+    .   .+++|++|++++  +.+..+|. +         .  ++|+
T Consensus       128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp----~---~l~~L~~L~Ls~--N~L~~lp~-l---------~--~~L~  183 (571)
T 3cvr_A          128 DNNQLTMLPE--LPALLEYINADNNQLTM-LP----E---LPTSLEVLSVRN--NQLTFLPE-L---------P--ESLE  183 (571)
T ss_dssp             CSSCCSCCCC--CCTTCCEEECCSSCCSC-CC----C---CCTTCCEEECCS--SCCSCCCC-C---------C--TTCC
T ss_pred             CCCcCCCCCC--cCccccEEeCCCCccCc-CC----C---cCCCcCEEECCC--CCCCCcch-h---------h--CCCC
Confidence            9999999887  78999999999999875 22    2   578999999999  35666776 4         2  8999


Q ss_pred             eeeccccCCCccccccccCCCCC-------CeEeecCCCCccccCCCCC-cccccceeecCCcch
Q 048829          883 SLSIAFFPNLESLSSSIVDLQNL-------TKLTLYDCPKLKYFPEKGL-PSSLLQLRIYRCPLI  939 (976)
Q Consensus       883 ~L~l~~~~~l~~l~~~l~~l~~L-------~~L~l~~c~~l~~i~~~~~-~~~L~~L~i~~c~~l  939 (976)
                      .|++++ +.++.+|. +..  +|       +.|++++ +.++.||.... .++|+.|++++|+.-
T Consensus       184 ~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          184 ALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             EEECCS-SCCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             EEECcC-CCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCC
Confidence            999999 68889997 554  77       9999999 57888987422 579999999999753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=1.7e-13  Score=142.14  Aligned_cols=57  Identities=21%  Similarity=0.269  Sum_probs=36.3

Q ss_pred             CCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceEEEeCCC
Q 048829          304 HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVS  364 (976)
Q Consensus       304 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~  364 (976)
                      +++|+.|+++++....+| .+..  +++|+.|++++|...+. +.+..+++|+.|++++|.
T Consensus       127 l~~L~~L~Ls~N~i~~~~-~l~~--l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKSIV-MLGF--LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CTTCCEEECTTSCCCBCG-GGGG--CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             cccccEEECCCCcCCCCh-HHcc--CCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence            444555555555555544 2322  67777888877775443 667778888888888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.40  E-value=5.1e-13  Score=154.87  Aligned_cols=142  Identities=15%  Similarity=0.155  Sum_probs=82.0

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      +.|+.|++++|.+... + .+..+++|+.|+|++|. +..++. +..+++|+.|+|++| .+..+| .+..+++|+.|++
T Consensus        43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence            5566666666654332 2 36666667777776653 333333 566666777777666 344444 3555666666666


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      ++|. +..+ ..+..+++|+.|++++|.+..++....+++|+.|++++|.+....+      +..+++|+.|+|++
T Consensus       117 s~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          117 EHNG-ISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSK  184 (605)
T ss_dssp             TTSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCS
T ss_pred             cCCC-CCCC-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcC
Confidence            6666 3333 2456666666666666666665444455566666666665544322      44555566666655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.40  E-value=6.8e-12  Score=127.16  Aligned_cols=127  Identities=21%  Similarity=0.241  Sum_probs=67.4

Q ss_pred             CccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829          772 KLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY  849 (976)
Q Consensus       772 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  849 (976)
                      +|++|++++|...+..|..+..+++|++|++++|.|..++..  ..+++|+.|++++|.+.....    ..+..+++|++
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~  116 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLKE  116 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh----hHhCcchhhCe
Confidence            444444444443333333444444444444444444444321  112333333333333332222    34567777777


Q ss_pred             EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829          850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~  914 (976)
                      |++++  +.+..+|...         ..+++|+.|++++ +.++.+|. .+..+++|+.|++++++
T Consensus       117 L~Ls~--N~l~~lp~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          117 LFMCC--NKLTELPRGI---------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EECCS--SCCCSCCTTG---------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EeccC--CcccccCccc---------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            77777  3555666654         4667777777777 56666664 46667777777777754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=2.2e-13  Score=141.26  Aligned_cols=140  Identities=17%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829          700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY  779 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  779 (976)
                      .+..++++++...+..  .+..+++|++|++++| .++.+| .+..+++|++|++++| .++.++. +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence            3444555555443322  3445556666666664 344444 4555666666666665 3444443 4455566666666


Q ss_pred             CCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          780 DCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      +|. ++.+|....  ++|+.|++++|.++.++....+++|+.|++++|.+....      .+..+++|++|++++
T Consensus        94 ~N~-l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           94 RNR-LKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHG  159 (263)
T ss_dssp             SSC-CSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTT
T ss_pred             CCc-cCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh------HHccCCCCCEEECCC
Confidence            655 333433222  556666666655555544444555555555555544321      244455555555555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.37  E-value=1.7e-12  Score=150.35  Aligned_cols=142  Identities=20%  Similarity=0.224  Sum_probs=75.0

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|+.|+|++|.+.+..+  +..+++|+.|++++| .+..+| .+..+++|+.|++++|. +..++ .+..+++|+.|+|
T Consensus        65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L  138 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYL  138 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEEC
Confidence            556666666655544333  555566666666654 333333 45555666666666552 33332 2444556666666


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      ++|. +..+ ..+..+++|+.|++++|.|..++....+++|+.|++++|.+....      .+..+++|+.|++++
T Consensus       139 s~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          139 GNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFS  206 (605)
T ss_dssp             CSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCS
T ss_pred             CCCc-cCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccC
Confidence            6655 3333 345555666666666655555544444555666666665554421      245555566666555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.36  E-value=4.2e-12  Score=126.91  Aligned_cols=90  Identities=14%  Similarity=0.092  Sum_probs=52.8

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|+..       ..+++|++|++
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~  172 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSE  172 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHH
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHH
Confidence            45666666666655555555666667777777665333222334566667777777766432       23446667777


Q ss_pred             cCCcCcccCCCcCCCCC
Q 048829          779 YDCKRLEALPKGLHNLT  795 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~  795 (976)
                      +.|...+.+|..++.++
T Consensus       173 ~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          173 WINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             HHHHCTTTBBCTTSSBC
T ss_pred             HHHhCCceeeccCcccc
Confidence            66666666666555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.35  E-value=7.5e-12  Score=125.90  Aligned_cols=145  Identities=17%  Similarity=0.268  Sum_probs=81.3

Q ss_pred             eEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCC
Q 048829          727 TINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGG  805 (976)
Q Consensus       727 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~  805 (976)
                      .++.++ ..++.+|..+.  ++|++|++++| .++.++. .+..+++|++|++++|......|..+..+++|++|++++|
T Consensus        15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            444444 34555555442  56666666666 3444443 4455666666777666644444566666677777777766


Q ss_pred             CCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccce
Q 048829          806 ELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTS  883 (976)
Q Consensus       806 ~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~  883 (976)
                      .|..++...  .+++|++|++++|.+....+    ..+.++++|++|++++  +.+..++...        |..+++|+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~~L~~  156 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYD--NKLQTIAKGT--------FSPLRAIQT  156 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCTTCCE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCC--CcCCEECHHH--------HhCCCCCCE
Confidence            666665432  23455555555555444333    3466667777777776  3444444432        245666666


Q ss_pred             eecccc
Q 048829          884 LSIAFF  889 (976)
Q Consensus       884 L~l~~~  889 (976)
                      |+++++
T Consensus       157 L~L~~N  162 (220)
T 2v9t_B          157 MHLAQN  162 (220)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            666663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.35  E-value=4.5e-12  Score=128.55  Aligned_cols=132  Identities=21%  Similarity=0.269  Sum_probs=109.6

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCCC-CCCCCCcc
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLR  774 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~  774 (976)
                      ++++|++|++++|.+.+..+..+..+++|++|++++|. ++.+| ..+..+++|++|++++| .++.++.. +..+++|+
T Consensus        38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~  115 (229)
T 3e6j_A           38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLK  115 (229)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhC
Confidence            34789999999999998888999999999999999965 45554 55788999999999999 55666654 56789999


Q ss_pred             EEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCcc
Q 048829          775 RLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIW  831 (976)
Q Consensus       775 ~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~  831 (976)
                      +|++++|. +..+|..+..+++|++|++++|.|..++..  ..+++|+.|++++|+...
T Consensus       116 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          116 ELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             EEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             eEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            99999998 668898999999999999999999988764  335788888888887654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.34  E-value=1.6e-12  Score=122.01  Aligned_cols=123  Identities=18%  Similarity=0.158  Sum_probs=98.3

Q ss_pred             CCccEeccccccCCCCCCCc-cccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccc-cchhhhccCC
Q 048829           92 QHLRTFLPVMLTDSSPGYLA-PSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRT-LPESVNKLYN  169 (976)
Q Consensus        92 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~-lp~~i~~L~~  169 (976)
                      ++|+.|.+.++.      +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++++++
T Consensus        17 ~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            567777665542      22 24555444889999999999999887 788899999999999999987 7888888999


Q ss_pred             ccEEecccccchhccc--hhhhccccCceeecCCCCCcccccc----ccCCCCCCceecc
Q 048829          170 LHSLLLEDCDRLKKLC--ADMGNLIKLHHLNNSNTDSLEETPL----GIGKLTCLQTLCN  223 (976)
Q Consensus       170 L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~  223 (976)
                      |++|++++| .+..+|  ..++.+++|++|++++|. +..+|.    .++.+++|++|++
T Consensus        90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence            999999994 677765  678999999999999997 777776    4888888888864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.33  E-value=2.5e-12  Score=140.61  Aligned_cols=153  Identities=16%  Similarity=0.129  Sum_probs=121.9

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhc-CCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCcc
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLD-NNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLR  774 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~  774 (976)
                      +|+.++.|+|++|.+.+..+..+. .+++|++|++++|......+..+.++++|++|++++|. ++.++. .+..+++|+
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE  115 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence            346789999999988887777777 89999999999965444445678899999999999994 555654 467789999


Q ss_pred             EEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC-----CCCccceeeecCCCCccchhhhcCCcccccCc--c
Q 048829          775 RLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG-----LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS--L  847 (976)
Q Consensus       775 ~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L  847 (976)
                      +|++++|......|..+..+++|+.|++++|.|..++...     .+++|+.|++++|.+.....    ..+..++.  |
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~~~l  191 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL----TDLQKLPAWVK  191 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH----HHHHHSCHHHH
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH----HHhhhccHhhc
Confidence            9999999866556778899999999999999999887653     37889999999988876554    34666776  4


Q ss_pred             cEEEEec
Q 048829          848 RYLLIRG  854 (976)
Q Consensus       848 ~~L~l~~  854 (976)
                      +.|++++
T Consensus       192 ~~l~l~~  198 (361)
T 2xot_A          192 NGLYLHN  198 (361)
T ss_dssp             TTEECCS
T ss_pred             ceEEecC
Confidence            7888887

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.33  E-value=6.1e-12  Score=126.53  Aligned_cols=133  Identities=14%  Similarity=0.168  Sum_probs=104.9

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccE
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRR  775 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~  775 (976)
                      +|++++.|++++|.+.+..+..+..+++|++|++++|......|..+.++++|++|++++| .++.+|.. +..+++|++
T Consensus        30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCE
Confidence            3468999999999888777778899999999999997655555888899999999999998 56667665 456889999


Q ss_pred             EEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCc
Q 048829          776 LEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGI  830 (976)
Q Consensus       776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~  830 (976)
                      |++++|......|..+..+++|+.|++++|.|+.++...  .+++|+.|++++|+..
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            999999865555678888999999999999888877532  3456666666666653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.33  E-value=2.9e-12  Score=123.18  Aligned_cols=127  Identities=21%  Similarity=0.154  Sum_probs=96.0

Q ss_pred             CCccEeccccccCCCCCCCc-cccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccc-cchhhhccCC
Q 048829           92 QHLRTFLPVMLTDSSPGYLA-PSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRT-LPESVNKLYN  169 (976)
Q Consensus        92 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~-lp~~i~~L~~  169 (976)
                      ++|+.|.+.++.      +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.+.. +|..++++++
T Consensus        24 ~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             ccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            567777665542      12 24444444888888888888888877 778888888888888888887 6777778888


Q ss_pred             ccEEecccccchhccc--hhhhccccCceeecCCCCCcccccc----ccCCCCCCceecceEec
Q 048829          170 LHSLLLEDCDRLKKLC--ADMGNLIKLHHLNNSNTDSLEETPL----GIGKLTCLQTLCNFVVG  227 (976)
Q Consensus       170 L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~~~~~  227 (976)
                      |++|++++| .+..+|  ..++.+++|++|++++|. +..+|.    .+..+++|++|++..+.
T Consensus        97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence            888888884 677766  568888888888888887 777776    58888888888665443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.31  E-value=6.3e-12  Score=137.41  Aligned_cols=125  Identities=14%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             eEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccccccc-CCCCCcEEEccCCCCCCccC-CCCCCCCCccEEEec
Q 048829          702 KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLH-NLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRLEIY  779 (976)
Q Consensus       702 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~  779 (976)
                      +.++++++.+. .+|..+.  ..++.|++++|......+..+. ++++|++|++++| .++.++ ..+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence            35555555432 2343322  2356666666432222233343 5566666666665 333333 234555566666666


Q ss_pred             CCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCc
Q 048829          780 DCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGI  830 (976)
Q Consensus       780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~  830 (976)
                      +|......+..+..+++|++|++++|.|..++...  .+++|+.|++++|.+.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            65532222234555566666666665555543321  2344444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.30  E-value=1.9e-11  Score=123.01  Aligned_cols=110  Identities=12%  Similarity=0.170  Sum_probs=64.7

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      ++|++|++++|.+.+..+..+.++++|++|++++|......+..+.++++|++|++++|......|..+..+++|++|++
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  136 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL  136 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence            45666666666655555556666666666666665443333445666666666666666433333445555666666666


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELP  808 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~  808 (976)
                      ++|...+..|..+..+++|++|++++|.+.
T Consensus       137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          137 YDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            666644444556666666666666665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.30  E-value=6.2e-12  Score=126.50  Aligned_cols=129  Identities=15%  Similarity=0.159  Sum_probs=104.3

Q ss_pred             CCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCcccccc-ccccCCCcccEEecCCCCccccch-hhhccC
Q 048829           92 QHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISELP-DSVGDLRYLRYLNLSGTNIRTLPE-SVNKLY  168 (976)
Q Consensus        92 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~  168 (976)
                      +.++.|.+.++.      +....+..+| .+++|++|+|++|.|+.++ ..|..+++|++|+|++|.+..+|. .|++++
T Consensus        32 ~~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  105 (220)
T 2v70_A           32 QYTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE  105 (220)
T ss_dssp             TTCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred             CCCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence            456778776553      2222245556 9999999999999999884 589999999999999999998855 589999


Q ss_pred             CccEEecccccchhcc-chhhhccccCceeecCCCCCcccc-ccccCCCCCCceecceEecC
Q 048829          169 NLHSLLLEDCDRLKKL-CADMGNLIKLHHLNNSNTDSLEET-PLGIGKLTCLQTLCNFVVGK  228 (976)
Q Consensus       169 ~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~~~~~  228 (976)
                      +|++|+|++| .+..+ |..|..+++|++|++++|. +..+ |..+..+++|++|++.....
T Consensus       106 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          106 SLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence            9999999994 66666 6679999999999999998 7777 55699999999997654443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=4.4e-12  Score=122.78  Aligned_cols=130  Identities=20%  Similarity=0.168  Sum_probs=107.3

Q ss_pred             ccccCCCCccEeccccccCCCCCCCccccccccccCC-cccEEEccCCccccccccccCCCcccEEecCCCCccccchhh
Q 048829           86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQ-RLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV  164 (976)
Q Consensus        86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i  164 (976)
                      ..+.++++|+.|.+.++.-       ..+ +.+..+. +|++|++++|.++.+ ..|+.+++|++|+|++|.|..+|..+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l-------~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKI-------PVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             CEEECTTSCEEEECTTSCC-------CSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HhcCCcCCceEEEeeCCCC-------chh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence            3456778899998876632       233 4566444 999999999999988 78999999999999999999997654


Q ss_pred             -hccCCccEEecccccchhccch--hhhccccCceeecCCCCCccccccc----cCCCCCCceecceEe
Q 048829          165 -NKLYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLNNSNTDSLEETPLG----IGKLTCLQTLCNFVV  226 (976)
Q Consensus       165 -~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~~~~~  226 (976)
                       +.+++|++|++++ +.+..+|.  .++.+++|++|++++|. +..+|..    ++.+++|++|+...+
T Consensus        84 ~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           84 DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence             8999999999999 57888887  78999999999999998 8888875    889999999975543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=4e-12  Score=151.50  Aligned_cols=152  Identities=19%  Similarity=0.191  Sum_probs=98.5

Q ss_pred             cceeEEEeecccccCCcccccccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccccccccCCC
Q 048829           67 RYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISELPDSVGDLR  145 (976)
Q Consensus        67 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~  145 (976)
                      .+++++++..+....  .........+|+.+.+.+... ..+  ...++++.+ .++.|++|+|++|.+..+|..+..++
T Consensus       173 ~~~~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~-~~n--~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDE--ANQALLQHKKLSQYSIDEDDD-IEN--RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYD  247 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCC
T ss_pred             CccceEEeeCCCCCc--chhhHhhcCccCcccccCccc-ccc--ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCC
Confidence            457777775554322  112233444455544333211 011  123556666 99999999999999999999999999


Q ss_pred             cccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCceecceE
Q 048829          146 YLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFV  225 (976)
Q Consensus       146 ~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~  225 (976)
                      +|++|+|++|.|..+|..|++|++|++|+|++ +.+..+|..|++|++|++|+|++|. +..+|.+|++|++|++|++..
T Consensus       248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCC
Confidence            99999999999999999999999999999999 5788999999999999999999998 899999999999999996543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=121.70  Aligned_cols=110  Identities=22%  Similarity=0.346  Sum_probs=87.9

Q ss_pred             ccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccc-hhhhccCCccEEecccccchhccch-hhhc
Q 048829          113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGN  190 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~  190 (976)
                      .+|..++  +.|++|+|++|.++.+|..|..+++|++|+|++|.|+.+| ..|.++++|++|+|++ +.+..+|. .|++
T Consensus        24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~  100 (193)
T 2wfh_A           24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDG  100 (193)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTT
T ss_pred             cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCC
Confidence            4454443  4788889999988888888888999999999999888885 5688899999999988 46777754 4888


Q ss_pred             cccCceeecCCCCCccccccc-cCCCCCCceecceEe
Q 048829          191 LIKLHHLNNSNTDSLEETPLG-IGKLTCLQTLCNFVV  226 (976)
Q Consensus       191 L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~  226 (976)
                      +++|++|++++|. +..+|.+ +..+++|++|++..+
T Consensus       101 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence            8999999999888 8888876 788888888865443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.27  E-value=1.1e-11  Score=119.09  Aligned_cols=138  Identities=25%  Similarity=0.210  Sum_probs=112.0

Q ss_pred             ccccceeEEEeecccccCCcccccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCcccc-cccccc
Q 048829           64 SFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISE-LPDSVG  142 (976)
Q Consensus        64 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~~~  142 (976)
                      ..+.+++++.+..+.+........+..+++|+.|.+.++.-       ..+ ..+..+++|++|++++|.++. +|..+.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-------~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-------ISV-SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-------CCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-------CCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            34577899999877654111123357889999998876642       233 445599999999999999998 688888


Q ss_pred             CCCcccEEecCCCCccccc--hhhhccCCccEEecccccchhccch----hhhccccCceeecCCCCCccccccc
Q 048829          143 DLRYLRYLNLSGTNIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA----DMGNLIKLHHLNNSNTDSLEETPLG  211 (976)
Q Consensus       143 ~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~~~lp~~  211 (976)
                      .+++|++|+|++|.+..+|  ..++.+++|++|++++ +.+..+|.    .+..+++|++|++++|. ..++|.+
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~  165 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS  165 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence            8999999999999999986  7899999999999999 47888876    68999999999999998 7777754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.22  E-value=1.2e-11  Score=116.03  Aligned_cols=104  Identities=21%  Similarity=0.269  Sum_probs=92.7

Q ss_pred             cCCcccEEEccCCccc--cccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhc-cchhhhccccCce
Q 048829          120 KLQRLRVFSLRGYHIS--ELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK-LCADMGNLIKLHH  196 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~--~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~  196 (976)
                      ..++|++|++++|.++  .+|..++.+++|++|++++|.+..+ ..++++++|++|++++| .+.. +|..++++++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence            5578999999999998  7899999999999999999999988 88999999999999995 5666 8888889999999


Q ss_pred             eecCCCCCccccc--cccCCCCCCceecceEe
Q 048829          197 LNNSNTDSLEETP--LGIGKLTCLQTLCNFVV  226 (976)
Q Consensus       197 L~l~~~~~~~~lp--~~i~~L~~L~~L~~~~~  226 (976)
                      |++++|. +..+|  ..++.+++|++|++...
T Consensus        93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             EECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             EECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence            9999998 88776  67999999999965443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.19  E-value=4.6e-11  Score=117.28  Aligned_cols=110  Identities=17%  Similarity=0.249  Sum_probs=72.8

Q ss_pred             ccccccccCCcccEEEccCCccccccc--cccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-h
Q 048829          113 SILPKLLKLQRLRVFSLRGYHISELPD--SVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-M  188 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~--~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i  188 (976)
                      .+|..++.  .|++|++++|.++.++.  .|+.+++|++|+|++|.|+.+ |..|+++.+|++|+|++ +.+..+|.. |
T Consensus        22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~   98 (192)
T 1w8a_A           22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMF   98 (192)
T ss_dssp             SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSS
T ss_pred             cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHh
Confidence            44444433  67777777777776654  267777777777777777766 56677777777777777 355555443 6


Q ss_pred             hccccCceeecCCCCCcccc-ccccCCCCCCceecceEe
Q 048829          189 GNLIKLHHLNNSNTDSLEET-PLGIGKLTCLQTLCNFVV  226 (976)
Q Consensus       189 ~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~~~  226 (976)
                      +++++|++|++++|. +..+ |..++.+++|++|++...
T Consensus        99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           99 LGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred             cCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence            777777777777777 5544 445777777777754433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.17  E-value=1.4e-10  Score=113.80  Aligned_cols=93  Identities=23%  Similarity=0.327  Sum_probs=77.7

Q ss_pred             cEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccch-hhhccccCceeecCCCC
Q 048829          125 RVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       125 r~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~  203 (976)
                      ++++++++.++.+|..+.  ++|++|+|++|.|+.+|..|.++++|++|+|++ +.+..++. .|.++++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCc
Confidence            689999999999998765  689999999999999999999999999999999 57777764 59999999999999998


Q ss_pred             Cccccccc-cCCCCCCcee
Q 048829          204 SLEETPLG-IGKLTCLQTL  221 (976)
Q Consensus       204 ~~~~lp~~-i~~L~~L~~L  221 (976)
                       +..++.. |+.+++|++|
T Consensus        90 -l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           90 -LRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             -CCBCCTTTTTTCTTCCEE
T ss_pred             -cCEeCHHHhCCCCCCCEE
Confidence             6666543 5555544444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=5.3e-11  Score=137.13  Aligned_cols=102  Identities=24%  Similarity=0.248  Sum_probs=89.4

Q ss_pred             cccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCC
Q 048829          123 RLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNT  202 (976)
Q Consensus       123 ~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~  202 (976)
                      .|++|+|++|.++.+|. |+.+++|++|+|++|.|..+|..|+++++|++|+|++ +.+..+| .+++|++|++|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCC
Confidence            58899999999999887 9999999999999999999999999999999999999 5788888 8999999999999999


Q ss_pred             CCcccc--ccccCCCCCCceecceEecC
Q 048829          203 DSLEET--PLGIGKLTCLQTLCNFVVGK  228 (976)
Q Consensus       203 ~~~~~l--p~~i~~L~~L~~L~~~~~~~  228 (976)
                      . +..+  |..++.|++|++|++..+..
T Consensus       519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          519 R-LQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             C-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             C-CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            8 7777  77899999999997655443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=1.1e-10  Score=125.79  Aligned_cols=98  Identities=12%  Similarity=0.078  Sum_probs=70.1

Q ss_pred             CCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccc-eeeccccCCCcc
Q 048829          816 PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLT-SLSIAFFPNLES  894 (976)
Q Consensus       816 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~  894 (976)
                      +++|+.+++.+|.+.....    ..|.++++|+.|++.+ +  +..++...        |..+++|+ .+++.+  .++.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~-n--i~~I~~~a--------F~~~~~L~~~l~l~~--~l~~  287 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPH-N--LKTIGQRV--------FSNCGRLAGTLELPA--SVTA  287 (329)
T ss_dssp             CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCT-T--CCEECTTT--------TTTCTTCCEEEEECT--TCCE
T ss_pred             cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCc-c--cceehHHH--------hhCChhccEEEEEcc--cceE
Confidence            5678888888777655444    5688888888888877 2  66666554        57788888 888887  6777


Q ss_pred             ccc-cccCCCCCCeEeecCCCCccccCCCCCc--ccccce
Q 048829          895 LSS-SIVDLQNLTKLTLYDCPKLKYFPEKGLP--SSLLQL  931 (976)
Q Consensus       895 l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~--~~L~~L  931 (976)
                      |+. .|..+++|+.+++++ +.++.|+...+.  ++|+.+
T Consensus       288 I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          288 IEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             ECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred             EchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence            765 777788888888876 567777776662  344444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.16  E-value=2.4e-09  Score=117.67  Aligned_cols=228  Identities=11%  Similarity=0.135  Sum_probs=139.9

Q ss_pred             CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEEEe
Q 048829          700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRLEI  778 (976)
Q Consensus       700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l  778 (976)
                      +|+.+.+.. .....-..+|.+|++|+.+++.+ +.++.++......++|+.+.+..+  ++.++.. +..|++|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence            345555443 22222234566666777777765 344555433333566777776643  5555443 445667777777


Q ss_pred             cCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccCCC--CCccceeeecCCCCcc---chhhhcCCcccccCcccEEEE
Q 048829          779 YDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEEDGL--PTNLHSLRIEGNMGIW---KSMIERGRGFHRFSSLRYLLI  852 (976)
Q Consensus       779 ~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~---~~~~~~~~~~~~l~~L~~L~l  852 (976)
                      .++  +..++. .|.. .+|+.+.+ .+.+..++...+  +++|+.+++.++....   ....+  ..|.+|++|+.+++
T Consensus       234 ~~~--l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          234 PEN--VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEI  307 (401)
T ss_dssp             CTT--CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECC
T ss_pred             CCC--ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEe
Confidence            653  444443 3333 56777766 344555544433  4667777776654430   01111  67899999999999


Q ss_pred             eccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCC---Ccccc
Q 048829          853 RGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKG---LPSSL  928 (976)
Q Consensus       853 ~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L  928 (976)
                      .+   .+..++...        |..+++|+.++|..  +++.|+. .|..+ +|+.+++.++ .+..++...   +|.++
T Consensus       308 ~~---~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l  372 (401)
T 4fdw_A          308 PE---SIRILGQGL--------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDI  372 (401)
T ss_dssp             CT---TCCEECTTT--------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred             CC---ceEEEhhhh--------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCc
Confidence            86   466666654        67899999999965  5888876 77788 9999999984 566666653   45788


Q ss_pred             cceeecCCcchHHHHhccCCcccccccc
Q 048829          929 LQLRIYRCPLIEEKCRKDGGQYWDLLTH  956 (976)
Q Consensus       929 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~  956 (976)
                      +.|++-...  .+.++..  ..|...+.
T Consensus       373 ~~l~vp~~~--~~~y~~a--~~W~~f~~  396 (401)
T 4fdw_A          373 TVIRVPAES--VEKYKNA--NGWRDFTN  396 (401)
T ss_dssp             CEEEECGGG--HHHHHHS--TTGGGGGG
T ss_pred             cEEEeCHHH--HHHhhhc--cchhhhhh
Confidence            888886533  4555543  34877654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.14  E-value=3.2e-11  Score=143.74  Aligned_cols=119  Identities=25%  Similarity=0.343  Sum_probs=102.9

Q ss_pred             ccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhh
Q 048829           86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVN  165 (976)
Q Consensus        86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~  165 (976)
                      ..+..++.|++|.+.++.       ...++..++++++|++|+|++|.|+.+|..|+.|++|++|+|++|.|+.+|..|+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~-------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~  290 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQ-------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG  290 (727)
T ss_dssp             ----CCCCCCEEECTTSC-------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred             hhhccCCCCcEEECCCCC-------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence            346778999999887654       3478888889999999999999999999999999999999999999999999999


Q ss_pred             ccCCccEEecccccchhccchhhhccccCceeecCCCCCccc-cccccC
Q 048829          166 KLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEE-TPLGIG  213 (976)
Q Consensus       166 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~i~  213 (976)
                      +|++|++|+|++ +.+..+|..|++|++|++|+|++|. +.. +|..+.
T Consensus       291 ~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~  337 (727)
T 4b8c_D          291 SCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILT  337 (727)
T ss_dssp             GGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHH
T ss_pred             CCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHh
Confidence            999999999999 5789999999999999999999998 554 444343

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=8e-10  Score=119.01  Aligned_cols=252  Identities=15%  Similarity=0.134  Sum_probs=120.6

Q ss_pred             cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCC--------CCCCcEEEEccCCCCCCCCCccc
Q 048829          533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VAL--------PSKLKKIEIRECDALKSLPEPWM  602 (976)
Q Consensus       533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~--------~~~L~~L~l~~~~~l~~l~~~~~  602 (976)
                      .++|+.|+|++|..... ......++.++.+.+.. +   .+|.  ...        +++|+++.+.+  .++.++...|
T Consensus        48 l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~-~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMA-N---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECT-T---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEe-cCccccccccccccccc-c---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHh
Confidence            47888888888876511 00111222233344333 2   2333  223        57777777777  3677777666


Q ss_pred             cCCCCcccEEEEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcc-eEeecCCCCcccccc
Q 048829          603 CDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLE-NLAISSCPSLTCIFS  681 (976)
Q Consensus       603 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~  681 (976)
                       .++++|+.+++.++. +..++...+....+...+.......... ...+.....  .....|+ .+.+.....+...+.
T Consensus       121 -~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~-~~~i~~~~f--~~~~~L~~~i~~~~~~~l~~~~~  195 (329)
T 3sb4_A          121 -KGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRF-KNRWEHFAF--IEGEPLETTIQVGAMGKLEDEIM  195 (329)
T ss_dssp             -TTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHT-STTTTTSCE--EESCCCEEEEEECTTCCHHHHHH
T ss_pred             -hcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhc-ccccccccc--ccccccceeEEecCCCcHHHHHh
Confidence             677788888887753 3344443222222222222211000000 000000000  0001122 222222111111000


Q ss_pred             CCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCC
Q 048829          682 KNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNL  760 (976)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l  760 (976)
                      ..           ..-+.+++.+.+.++-...........+++|+++++++|. ++.+ +..|.++++|+++++.++  +
T Consensus       196 ~~-----------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i  261 (329)
T 3sb4_A          196 KA-----------GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--L  261 (329)
T ss_dssp             HT-----------TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--C
T ss_pred             hc-----------ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--c
Confidence            00           0012455666665543222222222346777777777643 4444 445666777777777765  5


Q ss_pred             CccCCC-CCCCCCcc-EEEecCCcCcccCC-CcCCCCCccceEEEeCCCCCCccc
Q 048829          761 ESFPEG-GLPCAKLR-RLEIYDCKRLEALP-KGLHNLTSLQQLTIIGGELPSLEE  812 (976)
Q Consensus       761 ~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~~~~~  812 (976)
                      +.++.. +..|++|+ .+++.+  .++.++ ..|..+++|+.+++++|.++.++.
T Consensus       262 ~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          262 KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            556553 45566777 777766  244544 466777777777776666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.14  E-value=5.8e-11  Score=114.84  Aligned_cols=106  Identities=25%  Similarity=0.368  Sum_probs=91.8

Q ss_pred             ccccCCcccEEEccCCccccccccccCCC-cccEEecCCCCccccchhhhccCCccEEecccccchhccchh-hhccccC
Q 048829          117 KLLKLQRLRVFSLRGYHISELPDSVGDLR-YLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKL  194 (976)
Q Consensus       117 ~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L  194 (976)
                      .+..+..|++|++++|.++.+|. +..+. +|++|++++|.+..+ ..++++++|++|++++ +.+..+|.. ++.+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCC
Confidence            34488999999999999998865 55555 999999999999998 7899999999999999 578888866 4999999


Q ss_pred             ceeecCCCCCcccccc--ccCCCCCCceecceEe
Q 048829          195 HHLNNSNTDSLEETPL--GIGKLTCLQTLCNFVV  226 (976)
Q Consensus       195 ~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~  226 (976)
                      ++|++++|. +..+|.  .++.+++|++|++...
T Consensus        91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC
Confidence            999999998 888887  6899999999865443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.09  E-value=1.2e-10  Score=134.06  Aligned_cols=129  Identities=23%  Similarity=0.293  Sum_probs=94.5

Q ss_pred             ccccCCcccEEE-ccCCccccccc------cccCC--CcccEEecCCCCccccchhhhccCCccEEecccccchhccchh
Q 048829          117 KLLKLQRLRVFS-LRGYHISELPD------SVGDL--RYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD  187 (976)
Q Consensus       117 ~~~~l~~Lr~L~-Ls~~~i~~lp~------~~~~L--~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~  187 (976)
                      .+..+++|+.|+ ++.+.+..++.      .+..+  ..|++|+|++|.++.+|. |+++++|++|+|++ +.+..+|..
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~  481 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPA  481 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGG
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCc-ccccccchh
Confidence            334888899888 66655443321      12221  268999999999999987 99999999999999 578899999


Q ss_pred             hhccccCceeecCCCCCccccccccCCCCCCceecceEecCCCCCCchhhhccccccCceEEe
Q 048829          188 MGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEIS  250 (976)
Q Consensus       188 i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~  250 (976)
                      |++|++|++|++++|. +..+| .++++++|++|++..+..........+..++.|+ .+.+.
T Consensus       482 ~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~-~L~L~  541 (567)
T 1dce_A          482 LAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV-LLNLQ  541 (567)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC-EEECT
T ss_pred             hhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC-EEEec
Confidence            9999999999999998 88888 8999999999977655443321133444455554 44443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=1.8e-10  Score=110.62  Aligned_cols=95  Identities=23%  Similarity=0.313  Sum_probs=59.6

Q ss_pred             cccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccchh-hhccCCccEEecccccchhccchh-h
Q 048829          112 PSILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-M  188 (976)
Q Consensus       112 ~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i  188 (976)
                      ..+|..++  +.|++|+|++|.|+.+ |..|+++++|++|+|++|+|+.+|.. |+++++|++|+|++ +.+..+|.. |
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~  101 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAF  101 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred             CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHh
Confidence            34444443  5666677777766666 55666677777777777776666554 46667777777766 456666554 6


Q ss_pred             hccccCceeecCCCCCcccccc
Q 048829          189 GNLIKLHHLNNSNTDSLEETPL  210 (976)
Q Consensus       189 ~~L~~L~~L~l~~~~~~~~lp~  210 (976)
                      +.+++|++|++++|. +...+.
T Consensus       102 ~~l~~L~~L~L~~N~-~~c~~~  122 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNP-WDCECR  122 (174)
T ss_dssp             TTCTTCSEEECCSSC-BCTTBG
T ss_pred             ccccCCCEEEeCCCC-cccccc
Confidence            666777777776666 444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=1.8e-10  Score=110.61  Aligned_cols=101  Identities=20%  Similarity=0.365  Sum_probs=89.8

Q ss_pred             cEEEccCCccccccccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-hhccccCceeecCCC
Q 048829          125 RVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNT  202 (976)
Q Consensus       125 r~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~  202 (976)
                      +++++++++++.+|..+.  ++|++|+|++|.|..+ |..|+++++|++|+|++ +.+..+|.. |+++++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCC
Confidence            789999999999998775  8999999999999988 66899999999999999 588889876 689999999999999


Q ss_pred             CCccccccc-cCCCCCCceecceEecCC
Q 048829          203 DSLEETPLG-IGKLTCLQTLCNFVVGKD  229 (976)
Q Consensus       203 ~~~~~lp~~-i~~L~~L~~L~~~~~~~~  229 (976)
                      . +..+|.+ ++.+++|++|++..+...
T Consensus        92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 H-LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             C-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             c-cceeCHHHhccccCCCEEEeCCCCcc
Confidence            8 8899987 999999999977655443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=2.5e-10  Score=109.39  Aligned_cols=95  Identities=23%  Similarity=0.383  Sum_probs=45.1

Q ss_pred             cEEEccCCccccccccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-hhccccCceeecCCC
Q 048829          125 RVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNT  202 (976)
Q Consensus       125 r~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~  202 (976)
                      ++++++++.++.+|..+.  ++|++|+|++|.|+.+ |..|+++++|++|+|++ +.+..+|.. |.++++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC
Confidence            344555555554444432  4455555555555544 33444555555555554 244444433 345555555555555


Q ss_pred             CCccccccc-cCCCCCCceecc
Q 048829          203 DSLEETPLG-IGKLTCLQTLCN  223 (976)
Q Consensus       203 ~~~~~lp~~-i~~L~~L~~L~~  223 (976)
                      . +..+|.+ ++++++|++|++
T Consensus        89 ~-l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           89 Q-LKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEEC
T ss_pred             c-cCEeCHHHhcCCCCCCEEEe
Confidence            4 4444443 444555554433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.06  E-value=4.4e-10  Score=108.80  Aligned_cols=100  Identities=28%  Similarity=0.448  Sum_probs=60.1

Q ss_pred             CcccEEEccCCccccccc-cccCCCcccEEecCCCCccccchh-hhccCCccEEecccccchhccchh-hhccccCceee
Q 048829          122 QRLRVFSLRGYHISELPD-SVGDLRYLRYLNLSGTNIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLN  198 (976)
Q Consensus       122 ~~Lr~L~Ls~~~i~~lp~-~~~~L~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~  198 (976)
                      +.|++|++++|.++.+|. .|+.+++|++|++++|.+..+|.. ++++++|++|++++ +.+..+|.. ++++++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEEE
Confidence            456666666666665533 346666666666666666666433 46666666666666 355555543 56666666666


Q ss_pred             cCCCCCccccccc-cCCCCCCceecc
Q 048829          199 NSNTDSLEETPLG-IGKLTCLQTLCN  223 (976)
Q Consensus       199 l~~~~~~~~lp~~-i~~L~~L~~L~~  223 (976)
                      +++|. +..+|.. +..+++|++|++
T Consensus       107 l~~N~-l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A          107 LDTNQ-LKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             CCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCc-ceEeCHHHhcCCcccCEEEe
Confidence            66665 5566655 455666666644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.04  E-value=9.5e-12  Score=123.06  Aligned_cols=108  Identities=19%  Similarity=0.247  Sum_probs=89.9

Q ss_pred             ccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccc
Q 048829          113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI  192 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~  192 (976)
                      .++..+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|..++.+++|++|++++ +.+..+| .+++++
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~~~~l~  115 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIEKLV  115 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-HHHHHH
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-ccccCC
Confidence            33445558999999999999998888 88899999999999999999988888889999999998 4777777 688999


Q ss_pred             cCceeecCCCCCcccccc--ccCCCCCCceecce
Q 048829          193 KLHHLNNSNTDSLEETPL--GIGKLTCLQTLCNF  224 (976)
Q Consensus       193 ~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~  224 (976)
                      +|++|++++|. +..+|.  .+..+++|++|++.
T Consensus       116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A          116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEEC
T ss_pred             CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEec
Confidence            99999999988 777665  58888888888543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.02  E-value=6.8e-10  Score=108.84  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=65.9

Q ss_pred             CCceEEEEcCCCcchhhhh-hhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829          699 PSVKVLDVYGCPKLESIAE-RLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  777 (976)
                      +++++|++++|.+.+..+. .+..+++|++|++++|...+..|..+.++++|++|++++|......+..+..+++|++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            4666777777665554443 366666677777766544444466666666666777666633333333355566666666


Q ss_pred             ecCCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829          778 IYDCKRLEALPKGLHNLTSLQQLTIIGGELP  808 (976)
Q Consensus       778 l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~  808 (976)
                      +++|...+..|..+..+++|++|++++|.+.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            6666655555566666666666666666555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=1.3e-11  Score=122.06  Aligned_cols=125  Identities=21%  Similarity=0.229  Sum_probs=105.2

Q ss_pred             cccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhc
Q 048829           87 DLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNK  166 (976)
Q Consensus        87 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~  166 (976)
                      .+..+++|+.|.+.++.-       ..++ .+..+++|++|++++|.++.+|..+..+++|++|+|++|.+..+| .+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l-------~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNI-------EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             HHHHTTTCSEEECSEEEE-------SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             HHhcCCCCCEEECCCCCC-------cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            567889999998876632       3344 555999999999999999999998899999999999999999987 7999


Q ss_pred             cCCccEEecccccchhccch--hhhccccCceeecCCCCCccccccc-----------cCCCCCCceec
Q 048829          167 LYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLNNSNTDSLEETPLG-----------IGKLTCLQTLC  222 (976)
Q Consensus       167 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~-----------i~~L~~L~~L~  222 (976)
                      +++|++|++++ +.+..+|.  .+..+++|++|++++|. +...++.           +..+++|++|+
T Consensus       114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence            99999999999 57887765  68999999999999998 5444322           78888888886

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.00  E-value=6e-10  Score=106.66  Aligned_cols=94  Identities=27%  Similarity=0.363  Sum_probs=80.8

Q ss_pred             cccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccchh-hhccCCccEEecccccchhccchh-h
Q 048829          112 PSILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-M  188 (976)
Q Consensus       112 ~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i  188 (976)
                      ..+|..++  +.|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |.++++|++|+|++ +.+..+|.. |
T Consensus        22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~   98 (170)
T 3g39_A           22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAF   98 (170)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred             CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHh
Confidence            34555553  7899999999999988 77899999999999999999999765 68999999999999 578888775 8


Q ss_pred             hccccCceeecCCCCCccccc
Q 048829          189 GNLIKLHHLNNSNTDSLEETP  209 (976)
Q Consensus       189 ~~L~~L~~L~l~~~~~~~~lp  209 (976)
                      +++++|++|++++|. +...+
T Consensus        99 ~~l~~L~~L~L~~N~-~~c~c  118 (170)
T 3g39_A           99 DNLKSLTHIWLLNNP-WDCAC  118 (170)
T ss_dssp             TTCTTCCEEECCSSC-BCTTB
T ss_pred             cCCCCCCEEEeCCCC-CCCCc
Confidence            999999999999998 55443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.95  E-value=3e-08  Score=108.88  Aligned_cols=189  Identities=11%  Similarity=0.094  Sum_probs=133.8

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  777 (976)
                      ++|+.+++.+|........+|. +++|+.+.+.+  .++.+ ...|.++++|+.+++..+  ++.++...+.-.+|+.+.
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~  254 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVK  254 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEE
T ss_pred             ccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEE
Confidence            6778888877765554444555 68899998875  35555 567778889999999864  677776655557899999


Q ss_pred             ecCCcCcccCC-CcCCCCCccceEEEeCCCCC-----CcccCCC--CCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829          778 IYDCKRLEALP-KGLHNLTSLQQLTIIGGELP-----SLEEDGL--PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY  849 (976)
Q Consensus       778 l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~-----~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  849 (976)
                      +.++  ++.++ ..|..+++|+.+.+.++.+.     .++...+  +++|+.+++.++ ......    ..|.+|++|+.
T Consensus       255 lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~----~aF~~c~~L~~  327 (401)
T 4fdw_A          255 LPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQ----GLLGGNRKVTQ  327 (401)
T ss_dssp             EETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECT----TTTTTCCSCCE
T ss_pred             eCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhh----hhhcCCCCccE
Confidence            9543  55554 47788999999999886654     4554433  678999988843 332222    67899999999


Q ss_pred             EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCC-CCCeEeecC
Q 048829          850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQ-NLTKLTLYD  912 (976)
Q Consensus       850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~-~L~~L~l~~  912 (976)
                      +++..   .+..+....        |..+ +|+.+++.+ +.+..++. .+..++ +++.|++..
T Consensus       328 l~lp~---~l~~I~~~a--------F~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          328 LTIPA---NVTQINFSA--------FNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             EEECT---TCCEECTTS--------SSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             EEECc---cccEEcHHh--------CCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence            99976   355665543        5778 999999999 56666655 555564 678888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.93  E-value=3.9e-09  Score=102.08  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=54.2

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRL  776 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L  776 (976)
                      ++|++|++++|.+.+..+..+..+++|++|++++|. ++.+ +..+..+++|++|++++| .++.+|.. +..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence            456666666665554444445556666666666543 3333 333455556666666655 33333332 3445555555


Q ss_pred             EecCCcCcccCCCc-CCCCCccceEEEeCCCCC
Q 048829          777 EIYDCKRLEALPKG-LHNLTSLQQLTIIGGELP  808 (976)
Q Consensus       777 ~l~~c~~l~~~~~~-l~~l~~L~~L~l~~~~l~  808 (976)
                      ++++|. ++.+|.. +..+++|++|++++|.+.
T Consensus       106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             ECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence            555554 3333332 344555555555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.72  E-value=1.7e-08  Score=109.58  Aligned_cols=88  Identities=19%  Similarity=0.203  Sum_probs=45.3

Q ss_pred             cccccccCCcccEEEccC-Ccccccc-ccccCCCcccEEecCCCCccccc-hhhhccCCccEEecccccchhccchhhhc
Q 048829          114 ILPKLLKLQRLRVFSLRG-YHISELP-DSVGDLRYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGN  190 (976)
Q Consensus       114 ~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~  190 (976)
                      +|. +..+++|++|+|++ |.++.+| ..|++|++|++|+|++|.|..+| ..|++|++|++|+|++ |.+..+|..+..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~  101 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ  101 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence            444 33555555555553 5555553 44555555555555555555542 3455555555555555 345555544222


Q ss_pred             cccCceeecCCCC
Q 048829          191 LIKLHHLNNSNTD  203 (976)
Q Consensus       191 L~~L~~L~l~~~~  203 (976)
                      ...|++|++.+|.
T Consensus       102 ~~~L~~l~l~~N~  114 (347)
T 2ifg_A          102 GLSLQELVLSGNP  114 (347)
T ss_dssp             SCCCCEEECCSSC
T ss_pred             cCCceEEEeeCCC
Confidence            2225555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.68  E-value=6.7e-07  Score=98.72  Aligned_cols=206  Identities=15%  Similarity=0.159  Sum_probs=114.1

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  777 (976)
                      .+|+.+.+.++- ......++.++++|+.+.+..+  ++.+ ...+.+++.|+.+.+..+  ...+......+.+|+.+.
T Consensus       162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~  236 (394)
T 4fs7_A          162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNII  236 (394)
T ss_dssp             TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEE
T ss_pred             CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEE
Confidence            345555554321 1222345666777777777652  3333 445566677776666543  233444445556777777


Q ss_pred             ecCCcCcccCC-CcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829          778 IYDCKRLEALP-KGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       778 l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      +...  ...+. ..+..+..|+.+.+..+.. .+...  ..+..++.+......+     .+  ..+.++.+|+.+.+..
T Consensus       237 ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i-----~~--~~F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          237 IPDS--FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV-----PE--KTFYGCSSLTEVKLLD  306 (394)
T ss_dssp             ECTT--CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE-----CT--TTTTTCTTCCEEEECT
T ss_pred             ECCC--ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee-----cc--cccccccccccccccc
Confidence            6543  23332 3456667777777655322 22222  2234555555543321     11  4566777777777765


Q ss_pred             cCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCCc--ccccce
Q 048829          855 CDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGLP--SSLLQL  931 (976)
Q Consensus       855 c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~--~~L~~L  931 (976)
                         .+..+++..        |..+++|+.++|..  .++.|+. .|..+.+|+.+.+..  .++.|...++-  ++|+++
T Consensus       307 ---~i~~I~~~a--------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          307 ---SVKFIGEEA--------FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             ---TCCEECTTT--------TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEE
T ss_pred             ---ccceechhh--------hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEE
Confidence               244444432        56777777777754  4667755 666777777777764  26677666553  466666


Q ss_pred             eec
Q 048829          932 RIY  934 (976)
Q Consensus       932 ~i~  934 (976)
                      ++.
T Consensus       372 ~lp  374 (394)
T 4fs7_A          372 ELP  374 (394)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.64  E-value=6.2e-07  Score=99.00  Aligned_cols=60  Identities=17%  Similarity=0.196  Sum_probs=35.0

Q ss_pred             CcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeec
Q 048829          839 RGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLY  911 (976)
Q Consensus       839 ~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~  911 (976)
                      ..|.++++|+.+++..   .+..+...        +|..+++|+.+++..  .++.|+. .|..+++|+.+++.
T Consensus       314 ~aF~~c~~L~~i~lp~---~v~~I~~~--------aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPY---LVEEIGKR--------SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTTTCTTCCEECCCT---TCCEECTT--------TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred             hhhcCCCCCCEEEeCC---cccEEhHH--------hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence            4566666666666654   24444433        245666777776654  3666654 56666667666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.61  E-value=5.2e-08  Score=105.78  Aligned_cols=101  Identities=17%  Similarity=0.093  Sum_probs=84.4

Q ss_pred             EEEccCC-ccccccccccCCCcccEEecCC-CCccccc-hhhhccCCccEEecccccchhccch-hhhccccCceeecCC
Q 048829          126 VFSLRGY-HISELPDSVGDLRYLRYLNLSG-TNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSN  201 (976)
Q Consensus       126 ~L~Ls~~-~i~~lp~~~~~L~~L~~L~L~~-n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~  201 (976)
                      .++++++ +++.+|. |..+++|++|+|++ |.|..+| ..|++|.+|++|+|++| .+..+|. .|++|++|++|+|++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence            4588888 8999999 99999999999996 9999986 57999999999999995 6777755 589999999999999


Q ss_pred             CCCccccccccCCCCCCceecceEecCC
Q 048829          202 TDSLEETPLGIGKLTCLQTLCNFVVGKD  229 (976)
Q Consensus       202 ~~~~~~lp~~i~~L~~L~~L~~~~~~~~  229 (976)
                      |. +..+|..+.....|++|.+..+...
T Consensus        90 N~-l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NA-LESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             Cc-cceeCHHHcccCCceEEEeeCCCcc
Confidence            98 8899987444334998876655443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.45  E-value=8.1e-09  Score=112.28  Aligned_cols=155  Identities=15%  Similarity=0.116  Sum_probs=82.0

Q ss_pred             CCceEEEEcCCCcchhhhhhh----c-CCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCC-----CC
Q 048829          699 PSVKVLDVYGCPKLESIAERL----D-NNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPE-----GG  767 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~----~-~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~-----~~  767 (976)
                      +.|++|++++|.+.......+    . ..++|++|++++|.....- ......+++|++|++++|. ++....     ..
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence            567888888887765443332    2 2267888888886543221 2222335678888888873 322111     11


Q ss_pred             -CCCCCccEEEecCCcCcc----cCCCcCCCCCccceEEEeCCCCCCccc------CCCCCccceeeecCCCCccchhhh
Q 048829          768 -LPCAKLRRLEIYDCKRLE----ALPKGLHNLTSLQQLTIIGGELPSLEE------DGLPTNLHSLRIEGNMGIWKSMIE  836 (976)
Q Consensus       768 -~~~~~L~~L~l~~c~~l~----~~~~~l~~l~~L~~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~  836 (976)
                       ...++|++|++++|....    .++..+...++|++|++++|.|.....      ...+++|+.|++++|.+.......
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             234678888888776321    233344556677777777776654221      112345556666555554332211


Q ss_pred             cCCcccccCcccEEEEec
Q 048829          837 RGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       837 ~~~~~~~l~~L~~L~l~~  854 (976)
                      ....+...++|++|++++
T Consensus       231 l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          231 LARAAREHPSLELLHLYF  248 (372)
T ss_dssp             HHHHHHHCSSCCEEECTT
T ss_pred             HHHHHHhCCCCCEEeccC
Confidence            112233345555555555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.34  E-value=1.5e-05  Score=87.90  Aligned_cols=97  Identities=18%  Similarity=0.235  Sum_probs=54.1

Q ss_pred             cccEEEeeccCCcccC-ccccCCCCCccEEEeecC--CCCCCCCCcCC--CCCCcEEEEccCCCCCCCCCccccCCCCcc
Q 048829          535 RLEYLRLRYCEGLVKL-PQSSLSLSSLKEIEIYKC--SSLVSFPEVAL--PSKLKKIEIRECDALKSLPEPWMCDTSSSL  609 (976)
Q Consensus       535 ~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~c--~~l~~l~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L  609 (976)
                      .|+.+.+...  ++.+ ..+|.++++|+.+.+..+  ..++.+....+  +.+|+.+.+...  ++.++...+ ..+.+|
T Consensus        65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF-~~c~~L  139 (394)
T 4gt6_A           65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF-HHCEEL  139 (394)
T ss_dssp             CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT-TTCTTC
T ss_pred             cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh-hhhccc
Confidence            4777777642  3333 336777888888888653  23555554333  566666555433  555555555 567777


Q ss_pred             cEEEEecCCCCcccccc--cCCCCCcEEeec
Q 048829          610 EILKIWDCHSLTYIAEV--QLPLSLKRLDIQ  638 (976)
Q Consensus       610 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~  638 (976)
                      +.+.+..  .+..++..  ..+.+|+.+.+.
T Consensus       140 ~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          140 DTVTIPE--GVTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             CEEECCT--TCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccc--eeeeecccceeccccccccccc
Confidence            7777754  23344333  223445555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.30  E-value=4.4e-07  Score=97.53  Aligned_cols=168  Identities=17%  Similarity=0.190  Sum_probs=86.0

Q ss_pred             hhhhcCCCCCceEEeecCCC---------cccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCccc
Q 048829          716 AERLDNNTSLETINISNCEN---------LKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEA  786 (976)
Q Consensus       716 ~~~~~~l~~L~~L~l~~c~~---------l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~  786 (976)
                      ..++..+++|+.|.+.+...         ...++..+..+|+|+.|.|++|..+ .++.  ...++|+.|++..|.....
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KPRPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CBCTTCSEEEEECSBCCHH
T ss_pred             HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--ccCCCCcEEEEecCCCChH
Confidence            34455667788887754311         1123444556778888888777333 2333  2366788888877663222


Q ss_pred             CCCcC--CCCCccceEEEeC--CCCC-CcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCcc
Q 048829          787 LPKGL--HNLTSLQQLTIIG--GELP-SLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVS  861 (976)
Q Consensus       787 ~~~~l--~~l~~L~~L~l~~--~~l~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~  861 (976)
                      ....+  ..+|+|+.|+|+.  +... ....    ..+.           ..     -....+|+|++|++++| .....
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~----~~l~-----------~~-----l~~~~~p~Lr~L~L~~~-~i~~~  267 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDM----NVFR-----------PL-----FSKDRFPNLKWLGIVDA-EEQNV  267 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCG----GGTG-----------GG-----SCTTTCTTCCEEEEESC-TTHHH
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhH----HHHH-----------HH-----HhcCCCCCcCEEeCCCC-CCchH
Confidence            11122  3567777777753  1110 0000    0000           00     00124667777777663 11110


Q ss_pred             CCCCCcccccCCCCCCccccceeeccccCCCcc-----ccccccCCCCCCeEeecCCC
Q 048829          862 FPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES-----LSSSIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       862 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~l~~l~~L~~L~l~~c~  914 (976)
                      .+...     ..+ ..+++|++|+|+. +.++.     ++.++..+++|+.|++++|.
T Consensus       268 ~~~~l-----a~a-~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          268 VVEMF-----LES-DILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHH-----HHC-SSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHH-----HhC-ccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            00000     000 2467788888876 55654     44455677888888888763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.18  E-value=0.00014  Score=79.92  Aligned_cols=195  Identities=13%  Similarity=0.165  Sum_probs=112.4

Q ss_pred             hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccC-CCCCCCCCccEEEecCCcCcccCCCcC----
Q 048829          717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRLEIYDCKRLEALPKGL----  791 (976)
Q Consensus       717 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~l----  791 (976)
                      .++..+.+|+.+.+.+  .++.+........+|+.+.+...  +..+. ..+..+.+++........ ...+...+    
T Consensus       154 ~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~~~  228 (394)
T 4gt6_A          154 GMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSES-YPAIDNVLYEKS  228 (394)
T ss_dssp             TTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEEEC
T ss_pred             cceecccccccccccc--eeeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccc-cccccceeeccc
Confidence            4567778888888865  35555333333467888887654  23332 234556677776655433 11111111    


Q ss_pred             ----------CCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCC
Q 048829          792 ----------HNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDM  859 (976)
Q Consensus       792 ----------~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~  859 (976)
                                .....+..+.+. +.+..+....  .+.+|+.+.+.+....  .. .  ..|.++++|+.+.+..   .+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~-~--~aF~~c~~L~~i~l~~---~i  299 (394)
T 4gt6_A          229 ANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS--IG-T--GAFMNCPALQDIEFSS---RI  299 (394)
T ss_dssp             TTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE--EC-T--TTTTTCTTCCEEECCT---TC
T ss_pred             ccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce--ec-C--cccccccccccccCCC---cc
Confidence                      011111222111 1222222222  2456777776543221  11 1  5677888888888865   45


Q ss_pred             ccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCCc--ccccceeecCC
Q 048829          860 VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGLP--SSLLQLRIYRC  936 (976)
Q Consensus       860 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~--~~L~~L~i~~c  936 (976)
                      ..++...        |..+++|+.++|..  .++.|.. .|..+.+|+.+.+..  .++.|...++-  .+|+.+++.+.
T Consensus       300 ~~I~~~a--------F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          300 TELPESV--------FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEECTTT--------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             cccCcee--------ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            5555543        57888888888875  5777766 677888899888864  47788776664  57888888775


Q ss_pred             c
Q 048829          937 P  937 (976)
Q Consensus       937 ~  937 (976)
                      .
T Consensus       368 ~  368 (394)
T 4gt6_A          368 R  368 (394)
T ss_dssp             H
T ss_pred             e
Confidence            4

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.17  E-value=1.3e-06  Score=93.98  Aligned_cols=60  Identities=23%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCC--CCCCCccEEEec
Q 048829          717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGG--LPCAKLRRLEIY  779 (976)
Q Consensus       717 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~  779 (976)
                      ..+..+++|+.|++++|..+. ++. +. +++|++|++..|.........+  ..+|+|+.|+|+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            344555666666666553222 222 22 5666666666553211100001  135666666664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.15  E-value=2.2e-07  Score=100.94  Aligned_cols=83  Identities=19%  Similarity=0.214  Sum_probs=46.6

Q ss_pred             cCCcccEEEccCCccccc-ccccc-----CCCcccEEecCCCCcccc-chh-hhccCCccEEecccccchhccc-hhh--
Q 048829          120 KLQRLRVFSLRGYHISEL-PDSVG-----DLRYLRYLNLSGTNIRTL-PES-VNKLYNLHSLLLEDCDRLKKLC-ADM--  188 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~l-p~~~~-----~L~~L~~L~L~~n~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~lp-~~i--  188 (976)
                      -++.|++|+|++|.++.. ...+.     ..++|++|+|++|.+..- ... ...+.+|++|+|++| .+.... ..+  
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~  148 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD  148 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence            345677777777776542 22222     225777777777776532 222 334667777777774 343221 122  


Q ss_pred             ---hccccCceeecCCCC
Q 048829          189 ---GNLIKLHHLNNSNTD  203 (976)
Q Consensus       189 ---~~L~~L~~L~l~~~~  203 (976)
                         ...++|++|++++|.
T Consensus       149 ~L~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNP  166 (372)
T ss_dssp             HHHSTTCCCCEEECCSSC
T ss_pred             HHHhcCCccceeeCCCCC
Confidence               134667777777776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.13  E-value=0.0002  Score=78.28  Aligned_cols=75  Identities=15%  Similarity=0.201  Sum_probs=39.3

Q ss_pred             ccccEEEeeccCCcccCc-cccCCCCCccEEEeecCCCCCCCCCcCC-CCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829          534 CRLEYLRLRYCEGLVKLP-QSSLSLSSLKEIEIYKCSSLVSFPEVAL-PSKLKKIEIRECDALKSLPEPWMCDTSSSLEI  611 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~  611 (976)
                      .+|+.+.+..  .++.++ .+|.++.+|+.+.+..  .++.+....+ -.+|+.+.+..  .++.++...|  ...+|+.
T Consensus        46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c~l~~i~~~~--~l~~I~~~aF--~~~~L~~  117 (379)
T 4h09_A           46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADTKLQSYTGME--RVKKFGDYVF--QGTDLDD  117 (379)
T ss_dssp             GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCCCCEEEECT--TCCEECTTTT--TTCCCSE
T ss_pred             cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCCCCceEECCc--eeeEecccee--ccCCccc
Confidence            4555555543  233333 2566777777777753  3555554333 12455555543  2555555555  2235666


Q ss_pred             EEEec
Q 048829          612 LKIWD  616 (976)
Q Consensus       612 L~l~~  616 (976)
                      +.+.+
T Consensus       118 i~lp~  122 (379)
T 4h09_A          118 FEFPG  122 (379)
T ss_dssp             EECCT
T ss_pred             ccCCC
Confidence            66643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.10  E-value=0.00049  Score=75.23  Aligned_cols=87  Identities=18%  Similarity=0.311  Sum_probs=41.4

Q ss_pred             hcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEEEecCCcCcccCCC-cCCCCC
Q 048829          719 LDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRLEIYDCKRLEALPK-GLHNLT  795 (976)
Q Consensus       719 ~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~  795 (976)
                      +..+.+|+.+.+..  .+..+ ...+.++..|+.+.+..+  ++.+... +..+.+|+.+.+...  ++.++. .+..++
T Consensus       213 f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~  286 (379)
T 4h09_A          213 FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCT
T ss_pred             cccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceecccccccccc
Confidence            44455555555543  22222 334455566666666543  3444332 334555666655432  333332 345555


Q ss_pred             ccceEEEeCCCCCCcc
Q 048829          796 SLQQLTIIGGELPSLE  811 (976)
Q Consensus       796 ~L~~L~l~~~~l~~~~  811 (976)
                      +|+.+.+.++.++.++
T Consensus       287 ~L~~i~l~~~~i~~I~  302 (379)
T 4h09_A          287 NLTKVVMDNSAIETLE  302 (379)
T ss_dssp             TCCEEEECCTTCCEEC
T ss_pred             ccccccccccccceeh
Confidence            5555555544444443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.03  E-value=2.5e-06  Score=79.76  Aligned_cols=88  Identities=14%  Similarity=0.162  Sum_probs=63.5

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccC----CCCCcEEEccCCCCCCccC-CCCCCCCC
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHN----LCQLQQIGIGGCGNLESFP-EGGLPCAK  772 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~----l~~L~~L~l~~~~~l~~~~-~~~~~~~~  772 (976)
                      ..|++||+++|.+...-...+.++++|++|++++|..+++- -..+..    .++|++|+|++|+.++.-. ..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            36888999998877766667788999999999999887753 122332    2478999999998776421 11345788


Q ss_pred             ccEEEecCCcCccc
Q 048829          773 LRRLEIYDCKRLEA  786 (976)
Q Consensus       773 L~~L~l~~c~~l~~  786 (976)
                      |+.|++++|+.++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            88888888886654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=3.1e-06  Score=79.13  Aligned_cols=86  Identities=12%  Similarity=0.089  Sum_probs=41.1

Q ss_pred             cccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCC----CCCCcEEEEccCCCCCCCCCccccCCCCc
Q 048829          535 RLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VAL----PSKLKKIEIRECDALKSLPEPWMCDTSSS  608 (976)
Q Consensus       535 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~----~~~L~~L~l~~~~~l~~l~~~~~~~~l~~  608 (976)
                      .|+.|++++|.....--..+..+++|++|+|++|..+++-.-  ...    .++|++|++++|..+++-..... ..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCC
Confidence            566666666653332222345666677777777666553211  111    12455555555554444322222 23444


Q ss_pred             ccEEEEecCCCCc
Q 048829          609 LEILKIWDCHSLT  621 (976)
Q Consensus       609 L~~L~l~~~~~l~  621 (976)
                      |++|++++|+.++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            5555555444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.86  E-value=1.5e-05  Score=80.80  Aligned_cols=103  Identities=20%  Similarity=0.124  Sum_probs=61.9

Q ss_pred             cCCcccE--EEccCCcccccccc----ccCCCcccEEecCCCCcccc---chhhhccCCccEEecccccchhccchhhhc
Q 048829          120 KLQRLRV--FSLRGYHISELPDS----VGDLRYLRYLNLSGTNIRTL---PESVNKLYNLHSLLLEDCDRLKKLCADMGN  190 (976)
Q Consensus       120 ~l~~Lr~--L~Ls~~~i~~lp~~----~~~L~~L~~L~L~~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~  190 (976)
                      ..+.|+.  ++++.|....++..    ..++++|++|+|++|.|..+   |..++.+++|++|+|++ |.+..+ ..+..
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~  216 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDK  216 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGG
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhh
Confidence            4444554  55666654433322    24567777777777777654   35566777777777777 456555 33455


Q ss_pred             cc--cCceeecCCCCCcccccc-------ccCCCCCCceecce
Q 048829          191 LI--KLHHLNNSNTDSLEETPL-------GIGKLTCLQTLCNF  224 (976)
Q Consensus       191 L~--~L~~L~l~~~~~~~~lp~-------~i~~L~~L~~L~~~  224 (976)
                      +.  +|++|++++|.....+|.       .+..+++|+.|+..
T Consensus       217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence            54  777777777773333431       25667777777543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.77  E-value=7.8e-06  Score=82.88  Aligned_cols=79  Identities=23%  Similarity=0.316  Sum_probs=62.4

Q ss_pred             cCCcccEEEccCCccccc---cccccCCCcccEEecCCCCccccchhhhccC--CccEEecccccchhccc-------hh
Q 048829          120 KLQRLRVFSLRGYHISEL---PDSVGDLRYLRYLNLSGTNIRTLPESVNKLY--NLHSLLLEDCDRLKKLC-------AD  187 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~l---p~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp-------~~  187 (976)
                      +++.|++|+|++|.|+.+   |..+..+++|++|+|++|.|..+ ..+..+.  +|++|+|++|..-..+|       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            788999999999998865   46677899999999999999887 4556665  99999999964334444       23


Q ss_pred             hhccccCceeec
Q 048829          188 MGNLIKLHHLNN  199 (976)
Q Consensus       188 i~~L~~L~~L~l  199 (976)
                      +..+++|+.||-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            678999999874

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.63  E-value=1.3e-05  Score=92.22  Aligned_cols=49  Identities=12%  Similarity=0.190  Sum_probs=42.9

Q ss_pred             CCcHHHHHHHHHHHHHhCCCceeecC-CCCcEEEchhHHHHHHHHhccceE
Q 048829            2 EKTGEDLGLEIFKELHSRSFFQQSSN-DASRFVMHDLINDLAHWAAGEIYF   51 (976)
Q Consensus         2 ~~~~ed~g~~~~~~L~~r~l~~~~~~-~~~~~~mHDlv~dla~~~~~~~~~   51 (976)
                      +.++||+|+ ||++|++|||+|+... ...+|+|||+|||+|+++++++++
T Consensus       424 ~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          424 EQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             CCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            567899999 9999999999998763 456899999999999999988764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.60  E-value=2.6e-05  Score=75.18  Aligned_cols=83  Identities=18%  Similarity=0.190  Sum_probs=45.4

Q ss_pred             cCCcccEEEccCCcccc-----ccccccCCCcccEEecCCCCccc-----cchhhhccCCccEEec--ccccchhc----
Q 048829          120 KLQRLRVFSLRGYHISE-----LPDSVGDLRYLRYLNLSGTNIRT-----LPESVNKLYNLHSLLL--EDCDRLKK----  183 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~-----lp~~~~~L~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L--~~~~~l~~----  183 (976)
                      ..+.|++|+|++|.|..     +...+...+.|++|+|++|.|..     +...+...+.|++|+|  ++| .+..    
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~  141 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEM  141 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHH
Confidence            45566666666666542     33444445566666666666653     3445555566666666  443 3322    


Q ss_pred             -cchhhhccccCceeecCCCC
Q 048829          184 -LCADMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       184 -lp~~i~~L~~L~~L~l~~~~  203 (976)
                       +...+...++|++|++++|.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCcCEEeccCCC
Confidence             23334445666666666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.58  E-value=3.4e-05  Score=74.44  Aligned_cols=102  Identities=19%  Similarity=0.178  Sum_probs=78.2

Q ss_pred             cCCcccEEEccCC-cccc-----ccccccCCCcccEEecCCCCccc-----cchhhhccCCccEEecccccchhc-----
Q 048829          120 KLQRLRVFSLRGY-HISE-----LPDSVGDLRYLRYLNLSGTNIRT-----LPESVNKLYNLHSLLLEDCDRLKK-----  183 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~-~i~~-----lp~~~~~L~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----  183 (976)
                      ..+.|++|+|++| .+..     +...+...++|++|+|++|.|..     +...+...+.|++|+|++| .+..     
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence            7899999999999 8753     55677778999999999999873     4556777799999999996 4443     


Q ss_pred             cchhhhccccCceeec--CCCCCccc-----cccccCCCCCCceecc
Q 048829          184 LCADMGNLIKLHHLNN--SNTDSLEE-----TPLGIGKLTCLQTLCN  223 (976)
Q Consensus       184 lp~~i~~L~~L~~L~l--~~~~~~~~-----lp~~i~~L~~L~~L~~  223 (976)
                      +...+...++|++|++  ++|. +..     +...+...++|++|++
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L  158 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGY  158 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEec
Confidence            4556778889999999  7787 553     2233555577777754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.90  E-value=0.01  Score=52.74  Aligned_cols=52  Identities=21%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             cEEEccCCccc--cccccccCCCcccEEecCCCCccccch-hhhccCCccEEecccc
Q 048829          125 RVFSLRGYHIS--ELPDSVGDLRYLRYLNLSGTNIRTLPE-SVNKLYNLHSLLLEDC  178 (976)
Q Consensus       125 r~L~Ls~~~i~--~lp~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~  178 (976)
                      .+++.++++++  .+|..+.  .+|++|+|++|.|+.||. .|..+.+|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            36778888887  7776543  368888888888888864 4677788888888774

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.45  E-value=0.037  Score=49.03  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             cEEecCCCCcc--ccchhhhccCCccEEecccccchhccchh-hhccccCceeecCCCC
Q 048829          148 RYLNLSGTNIR--TLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNTD  203 (976)
Q Consensus       148 ~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~  203 (976)
                      .+++.+++.++  .+|..+.  .+|++|+|++ |.+..+|.+ |..+++|++|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            47888899888  8886543  4689999999 688899876 7889999999999986

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=92.22  E-value=0.088  Score=67.43  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhCCCceeec-CCCCcEEEchhHHHHHHHHhccc
Q 048829            6 EDLGLEIFKELHSRSFFQQSS-NDASRFVMHDLINDLAHWAAGEI   49 (976)
Q Consensus         6 ed~g~~~~~~L~~r~l~~~~~-~~~~~~~mHDlv~dla~~~~~~~   49 (976)
                      ++.+++++++|+++||++... +...+|+|||+||++|+..+.++
T Consensus       408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            677899999999999999865 33346999999999999998765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.77  E-value=0.17  Score=48.15  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             cCCcccEEEccCC-ccc-----cccccccCCCcccEEecCCCCcc-----ccchhhhccCCccEEecccccchhc-----
Q 048829          120 KLQRLRVFSLRGY-HIS-----ELPDSVGDLRYLRYLNLSGTNIR-----TLPESVNKLYNLHSLLLEDCDRLKK-----  183 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~-~i~-----~lp~~~~~L~~L~~L~L~~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-----  183 (976)
                      .-+.|+.|+|+++ .|.     .+-..+..=+.|+.|+|++|.|.     .|-+.+..=+.|++|+|++| .+..     
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence            4567777788774 554     23445555667888888888776     23344556677788888774 4432     


Q ss_pred             cchhhhccccCceeecCCC
Q 048829          184 LCADMGNLIKLHHLNNSNT  202 (976)
Q Consensus       184 lp~~i~~L~~L~~L~l~~~  202 (976)
                      +-..+..-+.|++|+|+++
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            2223444456777777754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.06  E-value=0.24  Score=47.04  Aligned_cols=110  Identities=16%  Similarity=0.136  Sum_probs=72.2

Q ss_pred             cCCCCccEeccccccCCCCCCCcc----ccccccccCCcccEEEccCCcccc-----ccccccCCCcccEEecCCCCccc
Q 048829           89 YDIQHLRTFLPVMLTDSSPGYLAP----SILPKLLKLQRLRVFSLRGYHISE-----LPDSVGDLRYLRYLNLSGTNIRT  159 (976)
Q Consensus        89 ~~~~~Lr~L~~~~~~~~~~~~~~~----~~~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~~~~L~~L~~L~L~~n~i~~  159 (976)
                      ..-+.|+.|.+.++..     +..    .+...+-.-+.|+.|+|++|.|..     +-..+..=+.|++|+|++|.|..
T Consensus        38 ~~n~~L~~L~L~~nn~-----igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKR-----VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             TTCSSCCEEECTTCCS-----SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hcCCCccEEECCCCCC-----CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3456777776654211     111    122233366789999999999863     44555566789999999999872


Q ss_pred             -----cchhhhccCCccEEeccccc--chh-----ccchhhhccccCceeecCCCC
Q 048829          160 -----LPESVNKLYNLHSLLLEDCD--RLK-----KLCADMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       160 -----lp~~i~~L~~L~~L~L~~~~--~l~-----~lp~~i~~L~~L~~L~l~~~~  203 (976)
                           |-+.+..=+.|++|+|++|.  .+.     .+-..+..=+.|+.|+++.+.
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                 34456666779999998642  222     233345566789999998765

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=85.16  E-value=0.58  Score=54.04  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHhCCCceeec-CCCCcEEEchhHHHHHHHHhc
Q 048829            7 DLGLEIFKELHSRSFFQQSS-NDASRFVMHDLINDLAHWAAG   47 (976)
Q Consensus         7 d~g~~~~~~L~~r~l~~~~~-~~~~~~~mHDlv~dla~~~~~   47 (976)
                      +.+++++++|+++||++... +....|+|||+||++|+..+.
T Consensus       409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence            45789999999999999754 334589999999999998743

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=84.87  E-value=0.41  Score=57.22  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhCCCceeecCCCCcEEEchhHHHHHH
Q 048829            6 EDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAH   43 (976)
Q Consensus         6 ed~g~~~~~~L~~r~l~~~~~~~~~~~~mHDlv~dla~   43 (976)
                      ++.|+++|++|++||||+.. +...+|+|||++++++.
T Consensus       401 eedAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          401 KSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKV  437 (1221)
T ss_dssp             SHHHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHhc
Confidence            34689999999999999985 34578999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	976
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 110 LAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNI--RTLPESVNKL 167
           L P +  +LL    +  F      + +          +++++LS + I   TL   +++ 
Sbjct: 12  LHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 70

Query: 168 YNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSL 205
             L +L LE       +   +     L  LN S     
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 108

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 34/267 (12%)

Query: 696 NLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIG 755
           +LPP   +LD+      E       N  +L T+ + N +  KI       L +L+++ + 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 756 GCGNLESFPEG------------------------GLPCAKLRRLEIYDCKRLEALPKGL 791
               L+  PE                         GL    +  L     K         
Sbjct: 88  KN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 792 HNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLL 851
             +  L  + I    + ++ + GLP +L  L ++GN                 ++L  L 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAAS----LKGLNNLAKLG 201

Query: 852 IRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLY 911
           +       V          L         L  +      + + +    +   N++ +   
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSN 260

Query: 912 DCPKLKYFPEKGLPSSLLQLRIYRCPL 938
           D     Y       +S   + ++  P+
Sbjct: 261 DFCPPGYN---TKKASYSGVSLFSNPV 284

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 125 RVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKL 184
           RV  L    ++ L   +  L  + +L+LS   +R LP ++  L  L  L   D       
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 185 CADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221
                  ++   L N+           +     L  L
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLL 95

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 121 LQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDR 180
              L   ++    + ELP        L  L  S  ++  +PE      NL  L +E    
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEYN-P 335

Query: 181 LKKLCADMGNLIKLHHLNN 199
           L++      ++  L  +N+
Sbjct: 336 LREFPDIPESVEDL-RMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 144 LRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTD 203
              L  LN+S   +  LP        L  L+      L ++     NL +L H+  +   
Sbjct: 283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQL-HVEYNPLR 337

Query: 204 SLEETPLGIGKL 215
              + P  +  L
Sbjct: 338 EFPDIPESVEDL 349

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
             +     R R   LRGY I  + +    L     ++ S   IR L      L  L +LL
Sbjct: 11  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLL 69

Query: 175 LEDC 178
           + + 
Sbjct: 70  VNNN 73

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.002
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLL 174
           +  +  L +L+        +S++  S+ +L  + +L+     I  L    N L  +  L 
Sbjct: 322 ISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLAN-LTRITQLG 379

Query: 175 LED 177
           L D
Sbjct: 380 LND 382

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	976
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.47
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.28
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.27
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.18
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.97
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.84
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.92

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.9e-19  Score=197.95  Aligned_cols=86  Identities=19%  Similarity=0.335  Sum_probs=73.7

Q ss_pred             cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeec
Q 048829          120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNN  199 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l  199 (976)
                      .+.+|++|++++++|+.+ +.++.|++|++|+|++|+|+.+|. |+++++|++|++++| .+..++ .++++++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~-~l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-cccccc-ccccccccccccc
Confidence            677899999999999987 578899999999999999999964 999999999999995 677775 4899999999999


Q ss_pred             CCCCCcccccc
Q 048829          200 SNTDSLEETPL  210 (976)
Q Consensus       200 ~~~~~~~~lp~  210 (976)
                      +++. ...++.
T Consensus       118 ~~~~-~~~~~~  127 (384)
T d2omza2         118 FNNQ-ITDIDP  127 (384)
T ss_dssp             CSSC-CCCCGG
T ss_pred             cccc-cccccc
Confidence            9887 555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=2e-18  Score=189.57  Aligned_cols=191  Identities=19%  Similarity=0.221  Sum_probs=92.9

Q ss_pred             hcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccc
Q 048829          719 LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQ  798 (976)
Q Consensus       719 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~  798 (976)
                      ...+++++.+++++|... .++. +...++|++|++++| .++.++ .+..+++|+.|++++|. +..++ .+..+++|+
T Consensus       193 ~~~l~~~~~l~l~~n~i~-~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~L~  266 (384)
T d2omza2         193 LAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLA-PLSGLTKLT  266 (384)
T ss_dssp             GGGCTTCSEEECCSSCCC-CCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCS
T ss_pred             cccccccceeeccCCccC-CCCc-ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCC-cccccccCC
Confidence            344455555555553222 2211 233455555555555 233332 23334555555555554 22222 244455555


Q ss_pred             eEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCc
Q 048829          799 QLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLP  878 (976)
Q Consensus       799 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l  878 (976)
                      +|+++++.+..++.....+.++.+++.+|......      .+..+++++.|+++++  .+..++.          +..+
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~------~~~~~~~l~~L~ls~n--~l~~l~~----------l~~l  328 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFN--NISDISP----------VSSL  328 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSS--CCSCCGG----------GGGC
T ss_pred             EeeccCcccCCCCcccccccccccccccccccccc------ccchhcccCeEECCCC--CCCCCcc----------cccC
Confidence            55555555555544444455555555555544321      2445556666666652  2232221          1355


Q ss_pred             cccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCC
Q 048829          879 ASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRC  936 (976)
Q Consensus       879 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c  936 (976)
                      ++|++|++++| .++.++ .+..+++|++|++++| +++.+++-+-.++|++|+++++
T Consensus       329 ~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         329 TKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence            66666666663 555555 4556666666666653 4555443222346666666543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=2.8e-19  Score=189.75  Aligned_cols=250  Identities=14%  Similarity=0.083  Sum_probs=186.8

Q ss_pred             cccEEEeeccCCcc--cCccccCCCCCccEEEeecCCCCC-CCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCccc
Q 048829          535 RLEYLRLRYCEGLV--KLPQSSLSLSSLKEIEIYKCSSLV-SFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLE  610 (976)
Q Consensus       535 ~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~-~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~  610 (976)
                      +++.|+|+++....  .+|..+.++++|++|++++|+.+. .+|. ...+++|++|++++|. +..++...+ ..++.|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFL-SQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGG-GGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc-ccccccccc-cchhhhc
Confidence            67888888876655  477888899999999998877765 6765 5568888888888887 444443333 4678888


Q ss_pred             EEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccc
Q 048829          611 ILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATL  689 (976)
Q Consensus       611 ~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~  689 (976)
                      .+++++|.....+|.. ..++.++.+++++|...+.+  |..+..                                   
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i--p~~~~~-----------------------------------  171 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGS-----------------------------------  171 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGC-----------------------------------
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccc--cccccc-----------------------------------
Confidence            8888887665555543 45566778888777654444  332221                                   


Q ss_pred             ccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCC
Q 048829          690 ESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLP  769 (976)
Q Consensus       690 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  769 (976)
                             ++..++.+++++|+..+..|..+..+..+ .+++.++.....+|..+..+++|+.+++++|.....+| .+..
T Consensus       172 -------l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~  242 (313)
T d1ogqa_         172 -------FSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL  242 (313)
T ss_dssp             -------CCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCC
T ss_pred             -------ccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-cccc
Confidence                   22345788888888888888877777544 68888888777888888889999999999986544444 4666


Q ss_pred             CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCC-CcccCCCCCccceeeecCCCCccc
Q 048829          770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELP-SLEEDGLPTNLHSLRIEGNMGIWK  832 (976)
Q Consensus       770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~~~L~~L~l~~~~~~~~  832 (976)
                      +++|+.|++++|...+.+|..++++++|++|++++|++. .+|..+.+++|+.+++++|+....
T Consensus       243 ~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccC
Confidence            789999999999877789999999999999999999887 677766778888888888875543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=3.3e-19  Score=189.18  Aligned_cols=226  Identities=14%  Similarity=0.083  Sum_probs=177.6

Q ss_pred             CCceEEEEcC-CCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829          699 PSVKVLDVYG-CPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE  777 (976)
Q Consensus       699 ~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  777 (976)
                      ++|++|+|++ |.+.+.+|..++++++|++|++++|...+..+..+..+++|+.+++++|.....+|..+..+++|+.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            7889999987 577778999999999999999999877766677788899999999999988888888888889999999


Q ss_pred             ecCCcCcccCCCcCCCCCcc-ceEEEeCCCCCCcccCCC-CCccceeeecCCCCccchhhhcCCcccccCcccEEEEecc
Q 048829          778 IYDCKRLEALPKGLHNLTSL-QQLTIIGGELPSLEEDGL-PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGC  855 (976)
Q Consensus       778 l~~c~~l~~~~~~l~~l~~L-~~L~l~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  855 (976)
                      +++|...+.+|..+..+..+ +.+++++|.+.......+ ......++++++......+    ..+..+++|+.+++++|
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~----~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCG----GGCCTTSCCSEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccc
Confidence            99999888888888888776 778888888775443221 1244567888887766665    45778899999999983


Q ss_pred             CCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecC
Q 048829          856 DDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYR  935 (976)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~  935 (976)
                       .....++ ..         ..+++|+.|++++|+.-+.+|.++.++++|++|++++|...+.+|+.+-.++|+.+++.+
T Consensus       232 -~l~~~~~-~~---------~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         232 -SLAFDLG-KV---------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             -EECCBGG-GC---------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             -ccccccc-cc---------ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCC
Confidence             3333343 23         478999999999954445899999999999999999965444888755567899999988


Q ss_pred             Ccch
Q 048829          936 CPLI  939 (976)
Q Consensus       936 c~~l  939 (976)
                      ++.+
T Consensus       301 N~~l  304 (313)
T d1ogqa_         301 NKCL  304 (313)
T ss_dssp             SSEE
T ss_pred             Cccc
Confidence            8643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=4.1e-17  Score=172.12  Aligned_cols=175  Identities=14%  Similarity=0.193  Sum_probs=108.7

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccc--ccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEE
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKI--LSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL  776 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  776 (976)
                      +.++.|++++|...+..+..+.....+..++...+.....  .+..+..+++|+.+++++| .+..+|...  +++|++|
T Consensus       100 ~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~--~~~L~~L  176 (305)
T d1xkua_         100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTEL  176 (305)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEE
T ss_pred             hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCccc--CCccCEE
Confidence            3456666666665555555566667777777776543332  2556677888888888888 455666543  4688999


Q ss_pred             EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      ++++|......+..+..++.+++|++++|.+..++..                          .+.++++|++|++++  
T Consensus       177 ~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~--------------------------~~~~l~~L~~L~L~~--  228 (305)
T d1xkua_         177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG--------------------------SLANTPHLRELHLNN--  228 (305)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT--------------------------TGGGSTTCCEEECCS--
T ss_pred             ECCCCcCCCCChhHhhccccccccccccccccccccc--------------------------cccccccceeeeccc--
Confidence            9988887777777788888888888888777776542                          344455555555555  


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-------cccCCCCCCeEeecCCC
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-------SIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-------~l~~l~~L~~L~l~~c~  914 (976)
                      +.+..+|.++         ..+++|+.|++++ +.++.|+.       .....++|+.|++++++
T Consensus       229 N~L~~lp~~l---------~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         229 NKLVKVPGGL---------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SCCSSCCTTT---------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccccccccc---------ccccCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            2344444433         3455555555555 34555533       12234556666666644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=3.7e-17  Score=172.51  Aligned_cols=242  Identities=14%  Similarity=0.172  Sum_probs=130.0

Q ss_pred             cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCccc
Q 048829          533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLE  610 (976)
Q Consensus       533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~  610 (976)
                      +++++.|++++|......+..+.++++|++|++++| .+..++.  ...+++|++|++++|. ++.++...    .+.++
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~----~~~l~  103 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM----PKTLQ  103 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC----CTTCC
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccCCc-cCcCccch----hhhhh
Confidence            356777777776443322335666777777777774 3444433  3346677777777775 66666532    34566


Q ss_pred             EEEEecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccc
Q 048829          611 ILKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPAT  688 (976)
Q Consensus       611 ~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  688 (976)
                      .|.+.++. +..++..  .....+..++...+........+..+..+                                 
T Consensus       104 ~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l---------------------------------  149 (305)
T d1xkua_         104 ELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM---------------------------------  149 (305)
T ss_dssp             EEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC---------------------------------
T ss_pred             hhhccccc-hhhhhhhhhhccccccccccccccccccCCCccccccc---------------------------------
Confidence            66666643 2222221  22233444554444322211111111111                                 


Q ss_pred             cccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCcc-CCCC
Q 048829          689 LESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESF-PEGG  767 (976)
Q Consensus       689 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~-~~~~  767 (976)
                                ++|+.+++++|.... ++..  .+++|++|++++|......+..+.+++.+++|++++| .+..+ +..+
T Consensus       150 ----------~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~  215 (305)
T d1xkua_         150 ----------KKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSL  215 (305)
T ss_dssp             ----------TTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTG
T ss_pred             ----------cccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccc
Confidence                      455566665554432 2222  2456666666666555555666666667777777666 33333 3334


Q ss_pred             CCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC--------CCccceeeecCCCC
Q 048829          768 LPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL--------PTNLHSLRIEGNMG  829 (976)
Q Consensus       768 ~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--------~~~L~~L~l~~~~~  829 (976)
                      ..+++|++|++++|. ++.+|.++..+++|++|++++|.|+.++...+        ..+|+.|++++|+.
T Consensus       216 ~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         216 ANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             GGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccceeeeccccc-ccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            456677777777764 55666667777777777777777776654322        24455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=4.4e-15  Score=160.34  Aligned_cols=88  Identities=28%  Similarity=0.359  Sum_probs=67.1

Q ss_pred             cccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCC
Q 048829          123 RLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNT  202 (976)
Q Consensus       123 ~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~  202 (976)
                      ++++|||++++++.+|+.   +++|++|+|++|+|+++|..+   .+|+.|++++ +.+..++. +  ...|++|++++|
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~-n~l~~l~~-l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDN-NNLKALSD-L--PPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCS-SCCSCCCS-C--CTTCCEEECCSS
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhh-cccchhhh-h--cccccccccccc
Confidence            578899999999988864   468899999999999998765   4677888888 45666542 1  146899999998


Q ss_pred             CCccccccccCCCCCCceec
Q 048829          203 DSLEETPLGIGKLTCLQTLC  222 (976)
Q Consensus       203 ~~~~~lp~~i~~L~~L~~L~  222 (976)
                      . +..+|. ++.+++|++|+
T Consensus       109 ~-l~~lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_         109 Q-LEKLPE-LQNSSFLKIID  126 (353)
T ss_dssp             C-CSSCCC-CTTCTTCCEEE
T ss_pred             c-cccccc-hhhhccceeec
Confidence            7 777774 56777777774

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.1e-16  Score=160.12  Aligned_cols=178  Identities=20%  Similarity=0.198  Sum_probs=107.0

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEE
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL  776 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  776 (976)
                      +|+++++|+|++|.+.+..+..+.++++|++|++++| .++.+|. +..+++|++|++++| .++.++..+..+++|+.|
T Consensus        29 lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVL  105 (266)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEE
T ss_pred             cCcCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccccc-cccccccccccccccccc
Confidence            3466778888877776666667777777777777775 4555543 456777777777777 455566666667777777


Q ss_pred             EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829          777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD  856 (976)
Q Consensus       777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  856 (976)
                      ++++|......+..+..+.+++.|++++|.+..++..                          .+..+++|+.|++++  
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~--------------------------~~~~l~~l~~l~l~~--  157 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG--------------------------LLTPTPKLEKLSLAN--  157 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT--------------------------TTTTCTTCCEEECTT--
T ss_pred             cccccccceeeccccccccccccccccccccceeccc--------------------------cccccccchhccccc--
Confidence            7777775544445566677777777777776666543                          334444455555544  


Q ss_pred             CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829          857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~  914 (976)
                      +.+..++.+.        |..+++|++|+|++ +.++.||.++..+++|+.|+++++|
T Consensus       158 N~l~~~~~~~--------~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         158 NNLTELPAGL--------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SCCSCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccCccc--------cccccccceeeccc-CCCcccChhHCCCCCCCEEEecCCC
Confidence            2333333322        23445555555555 3455555555555555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.1e-16  Score=159.89  Aligned_cols=203  Identities=22%  Similarity=0.231  Sum_probs=159.5

Q ss_pred             CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccE
Q 048829          697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRR  775 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~  775 (976)
                      +|+++++|+|++|++.+..+..+.++++|++|+++++......+..+..++.++.+.+..+..++.++. .+..+++|++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            457899999999998776677899999999999998655554566777789999999988878877754 4667899999


Q ss_pred             EEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829          776 LEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR  853 (976)
Q Consensus       776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  853 (976)
                      |++++|......+..+...++|+.+++++|.++.++...  ..++|+.|++++|.+.....    ..+.++++|+.++++
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~----~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLH  185 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch----hhhccccccchhhhh
Confidence            999999855555567788999999999999999887653  35788899999888766554    567888899999998


Q ss_pred             ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829          854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP  914 (976)
Q Consensus       854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~  914 (976)
                      + +......|..+         ..+++|++|++++ +.+..++. .+..+++|++|++++++
T Consensus       186 ~-N~l~~i~~~~f---------~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         186 Q-NRVAHVHPHAF---------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             S-SCCCEECTTTT---------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             h-ccccccChhHh---------hhhhhcccccccc-cccccccccccccccccCEEEecCCC
Confidence            8 33444444443         5788889999988 56666654 67788888888888854

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=1.4e-14  Score=156.34  Aligned_cols=315  Identities=27%  Similarity=0.288  Sum_probs=192.0

Q ss_pred             ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829          534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK  613 (976)
Q Consensus       534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~  613 (976)
                      .+++.|+++++. ++.+|+.   .++|++|++++ +.++.+|.  .+.+|++|++++|. ++.++.     -.+.|++|+
T Consensus        38 ~~l~~LdLs~~~-L~~lp~~---~~~L~~L~Ls~-N~l~~lp~--~~~~L~~L~l~~n~-l~~l~~-----lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLPEL---PPHLESLVASC-NSLTELPE--LPQSLKSLLVDNNN-LKALSD-----LPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSC-CSCCCSC---CTTCSEEECCS-SCCSSCCC--CCTTCCEEECCSSC-CSCCCS-----CCTTCCEEE
T ss_pred             cCCCEEEeCCCC-CCCCCCC---CCCCCEEECCC-CCCccccc--chhhhhhhhhhhcc-cchhhh-----hcccccccc
Confidence            467888888765 4566743   46788888876 67787774  35678888888876 666553     234688888


Q ss_pred             EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829          614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE  693 (976)
Q Consensus       614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  693 (976)
                      +++|. +..++....+++|+.|++++|......   ...          +.+..+.+..+..... .   .         
T Consensus       105 L~~n~-l~~lp~~~~l~~L~~L~l~~~~~~~~~---~~~----------~~l~~l~~~~~~~~~~-~---~---------  157 (353)
T d1jl5a_         105 VSNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLP---DLP----------PSLEFIAAGNNQLEEL-P---E---------  157 (353)
T ss_dssp             CCSSC-CSSCCCCTTCTTCCEEECCSSCCSCCC---CCC----------TTCCEEECCSSCCSSC-C---C---------
T ss_pred             ccccc-cccccchhhhccceeeccccccccccc---ccc----------ccccchhhcccccccc-c---c---------
Confidence            88764 566666666777888888777532211   111          2344555444332211 0   0         


Q ss_pred             ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829          694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL  773 (976)
Q Consensus       694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L  773 (976)
                      + ...+.++.+++++|......    ......+.+...+ ..+..++. +..++.|+.+++++|. ...++..   .+++
T Consensus       158 l-~~l~~l~~L~l~~n~~~~~~----~~~~~~~~l~~~~-~~~~~~~~-~~~l~~L~~l~l~~n~-~~~~~~~---~~~l  226 (353)
T d1jl5a_         158 L-QNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGN-NILEELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSL  226 (353)
T ss_dssp             C-TTCTTCCEEECCSSCCSSCC----CCCTTCCEEECCS-SCCSSCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTC
T ss_pred             c-cccccceecccccccccccc----ccccccccccccc-cccccccc-cccccccccccccccc-ccccccc---cccc
Confidence            0 11156777777776543321    1122234444444 34444443 4567888888888773 3334432   3467


Q ss_pred             cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829          774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR  853 (976)
Q Consensus       774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  853 (976)
                      ..+.+.++.. ...+.   ....+...++..+.+..+..  .+......++..+.....        ...+++|++|+++
T Consensus       227 ~~~~~~~~~~-~~~~~---~~~~l~~~~~~~~~~~~l~~--l~~~~~~~~~~~~~~~~~--------~~~~~~L~~L~Ls  292 (353)
T d1jl5a_         227 EALNVRDNYL-TDLPE---LPQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRSL--------CDLPPSLEELNVS  292 (353)
T ss_dssp             CEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSEESC--CCTTCCEEECCSSCCSEE--------CCCCTTCCEEECC
T ss_pred             cccccccccc-ccccc---cccccccccccccccccccc--ccchhcccccccCccccc--------cccCCCCCEEECC
Confidence            7777777663 22322   23455555555544433321  223444555555544322        2346899999999


Q ss_pred             ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceee
Q 048829          854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRI  933 (976)
Q Consensus       854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i  933 (976)
                      +|  .+..+|.            .+++|+.|++++ ++++++|..   +++|++|++++|+ ++.+|.  +|.+|+.|.+
T Consensus       293 ~N--~l~~lp~------------~~~~L~~L~L~~-N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~--~~~~L~~L~~  351 (353)
T d1jl5a_         293 NN--KLIELPA------------LPPRLERLIASF-NHLAEVPEL---PQNLKQLHVEYNP-LREFPD--IPESVEDLRM  351 (353)
T ss_dssp             SS--CCSCCCC------------CCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCSSC-CSSCCC--CCTTCCEEEC
T ss_pred             CC--ccCcccc------------ccCCCCEEECCC-CcCCccccc---cCCCCEEECcCCc-CCCCCc--cccccCeeEC
Confidence            83  5667774            357899999998 578899853   4689999999976 899987  7889999987


Q ss_pred             c
Q 048829          934 Y  934 (976)
Q Consensus       934 ~  934 (976)
                      .
T Consensus       352 ~  352 (353)
T d1jl5a_         352 N  352 (353)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.2e-16  Score=160.29  Aligned_cols=210  Identities=19%  Similarity=0.270  Sum_probs=114.3

Q ss_pred             CCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc--cCCCCCcEEeeccCcCccccc
Q 048829          570 SLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLT  647 (976)
Q Consensus       570 ~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~  647 (976)
                      .++++|. ..++++++|++++|. ++.++...+ .+++.|++|+++++. +..++..  .....++.+.+..+..++.+ 
T Consensus        22 ~L~~iP~-~ip~~~~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-   96 (284)
T d1ozna_          22 GLQAVPV-GIPAASQRIFLHGNR-ISHVPAASF-RACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSV-   96 (284)
T ss_dssp             CCSSCCT-TCCTTCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCC-
T ss_pred             CCCccCC-CCCCCCCEEECcCCc-CCCCCHHHh-hcccccccccccccc-ccccccccccccccccccccccccccccc-
Confidence            4666653 335667777777776 666665544 566777777776653 3333322  22334555554444443333 


Q ss_pred             cccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCce
Q 048829          648 VEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLET  727 (976)
Q Consensus       648 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  727 (976)
                       +..                                .         +..+ ++|++|++++|......+..+..+++|+.
T Consensus        97 -~~~--------------------------------~---------~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  133 (284)
T d1ozna_          97 -DPA--------------------------------T---------FHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQY  133 (284)
T ss_dssp             -CTT--------------------------------T---------TTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             -cch--------------------------------h---------hccc-ccCCEEecCCcccccccccccchhcccch
Confidence             110                                0         0011 45666666666555555555666666666


Q ss_pred             EEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccC-CCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCC
Q 048829          728 INISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGG  805 (976)
Q Consensus       728 L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~  805 (976)
                      +++++|. ++.+ +..+..+++|++|++++| .++.++ ..+..+++|+.+++++|......|..+..+++|++|++++|
T Consensus       134 l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         134 LYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             hhhcccc-ccccChhHhccccchhhcccccC-cccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc
Confidence            6666643 3333 445556666666666666 344443 33445666666666666655555666666666666666666


Q ss_pred             CCCCcccC--CCCCccceeeecCCCC
Q 048829          806 ELPSLEED--GLPTNLHSLRIEGNMG  829 (976)
Q Consensus       806 ~l~~~~~~--~~~~~L~~L~l~~~~~  829 (976)
                      .+..++..  +.+++|++|++++|+.
T Consensus       212 ~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         212 NLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccccccccccccccCEEEecCCCC
Confidence            66665432  2234444444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-15  Score=155.00  Aligned_cols=200  Identities=20%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             CCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEE
Q 048829          556 SLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRL  635 (976)
Q Consensus       556 ~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L  635 (976)
                      +..++.+++.++ ..++.+|. ..++++++|++++|. ++.++...+ ..+++|++|++++| .++.++....+++|++|
T Consensus         8 ~~~~~~~v~C~~-~~L~~iP~-~lp~~l~~L~Ls~N~-i~~l~~~~f-~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDK-RNLTALPP-DLPKDTTILHLSENL-LYTFSLATL-MPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTT-SCCSSCCS-CCCTTCCEEECTTSC-CSEEEGGGG-TTCTTCCEEECTTS-CCCEEECCSCCTTCCEE
T ss_pred             ccCCCeEEEccC-CCCCeeCc-CcCcCCCEEECcCCc-CCCcCHHHh-hccccccccccccc-ccccccccccccccccc
Confidence            344555666665 56777764 235678888888887 677766555 56778888888776 45555554555566666


Q ss_pred             eeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhh
Q 048829          636 DIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESI  715 (976)
Q Consensus       636 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  715 (976)
                      ++++|+ ++..  +..+..+                                           ++|+.|++++|...+..
T Consensus        83 ~Ls~N~-l~~~--~~~~~~l-------------------------------------------~~L~~L~l~~~~~~~~~  116 (266)
T d1p9ag_          83 DLSHNQ-LQSL--PLLGQTL-------------------------------------------PALTVLDVSFNRLTSLP  116 (266)
T ss_dssp             ECCSSC-CSSC--CCCTTTC-------------------------------------------TTCCEEECCSSCCCCCC
T ss_pred             cccccc-cccc--ccccccc-------------------------------------------cccccccccccccceee
Confidence            666663 2211  1111110                                           44555555555554444


Q ss_pred             hhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCCcCCCC
Q 048829          716 AERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNL  794 (976)
Q Consensus       716 ~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~l~~l  794 (976)
                      +..+..+.++++|++++|......+..+..+++|+.+++++| .++.++. .+..+++|++|++++|. ++.+|.++..+
T Consensus       117 ~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~  194 (266)
T d1p9ag_         117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGS  194 (266)
T ss_dssp             SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred             ccccccccccccccccccccceeccccccccccchhcccccc-cccccCccccccccccceeecccCC-CcccChhHCCC
Confidence            445555555555555554322222334444555555555555 2333332 23445555555555555 44555555555


Q ss_pred             CccceEEEeCCCCC
Q 048829          795 TSLQQLTIIGGELP  808 (976)
Q Consensus       795 ~~L~~L~l~~~~l~  808 (976)
                      ++|+.|++++|.+.
T Consensus       195 ~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         195 HLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCSEEECCSCCBC
T ss_pred             CCCCEEEecCCCCC
Confidence            55555555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.5e-13  Score=137.22  Aligned_cols=197  Identities=18%  Similarity=0.151  Sum_probs=112.3

Q ss_pred             CCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccE
Q 048829          698 PPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRR  775 (976)
Q Consensus       698 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~  775 (976)
                      |+++++|++++|.+....+..|.++++|++|++++|.....+ +..+.+++.++++.+.++..+..++.. +..+++|++
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            457788888888765544556777888888888887666555 345667788888877766566555443 455777888


Q ss_pred             EEecCCcCcccCCC--cCCCCCccceEEEeCCCCCCcccCCC---CCccceeeecCCCCccchhhhcCCcccccCcccEE
Q 048829          776 LEIYDCKRLEALPK--GLHNLTSLQQLTIIGGELPSLEEDGL---PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL  850 (976)
Q Consensus       776 L~l~~c~~l~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L  850 (976)
                      +++++|. +..++.  .+..++.+..+...++.+..++...+   ...++.|++++|.+.....     ...+.++++.+
T Consensus       108 l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~-----~~~~~~~l~~~  181 (242)
T d1xwdc1         108 LLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----CAFNGTQLDEL  181 (242)
T ss_dssp             EEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TTTTTCCEEEE
T ss_pred             cccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc-----ccccchhhhcc
Confidence            8887776 333332  22334444444445556665554332   3456666666665554332     12233444444


Q ss_pred             EEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEee
Q 048829          851 LIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTL  910 (976)
Q Consensus       851 ~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l  910 (976)
                      ...+ ++.++.+|...        |..+++|+.|++++ +.++.+|. .+.++++|+.+++
T Consensus       182 ~~l~-~n~l~~l~~~~--------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         182 NLSD-NNNLEELPNDV--------FHGASGPVILDISR-TRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             ECTT-CTTCCCCCTTT--------TTTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccc-ccccccccHHH--------hcCCCCCCEEECCC-CcCCccCHHHHcCCcccccCcC
Confidence            4433 24455555443        34566666666666 44566654 3344444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=1.3e-13  Score=137.60  Aligned_cols=187  Identities=17%  Similarity=0.241  Sum_probs=108.4

Q ss_pred             CCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceE
Q 048829          721 NNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQL  800 (976)
Q Consensus       721 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L  800 (976)
                      .+.+|++|++.+| .++.+ .++..+++|++|++++|. +..++. +..+++|+.+++++|. .+.++ .+..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~-~i~~l-~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCC-CCCcc-hhHhcCCCCcEeecCCce-eecccc-cccccccccccccccc-ccccc-ccccccccccc
Confidence            3455666666664 34444 245566666666666663 333321 4455666666666665 33442 45566666666


Q ss_pred             EEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccc
Q 048829          801 TIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPAS  880 (976)
Q Consensus       801 ~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~  880 (976)
                      +++++....+......+.+..+.++++......      .+..+++|++|++++|  .+..++.          +..+++
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~L~~L~l~~n--~~~~~~~----------l~~l~~  174 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNA--QVSDLTP----------LANLSK  174 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSS--CCCCCGG----------GTTCTT
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhh------hhcccccccccccccc--ccccchh----------hccccc
Confidence            666665555555455566666666666554432      2456667777777662  2222211          246677


Q ss_pred             cceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeec
Q 048829          881 LTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIY  934 (976)
Q Consensus       881 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~  934 (976)
                      |+.|++++| .+++++ .+..+++|++|++++| +++.+++-+-.++|+.|+++
T Consensus       175 L~~L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         175 LTTLKADDN-KISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCEEECCSS-CCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             ceecccCCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            777777773 666666 4667777777777775 56666653334567777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.7e-13  Score=134.37  Aligned_cols=164  Identities=20%  Similarity=0.277  Sum_probs=86.4

Q ss_pred             CCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEE
Q 048829          723 TSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTI  802 (976)
Q Consensus       723 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l  802 (976)
                      .+|++|++++| .++.++ ++..+++|++|++++| .++.++. +..+++|++|++++|. ++.+| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccc-ccccc-ccccccccccccc
Confidence            34555555553 233332 2445555555555555 3333432 2344555555555554 33443 3455555555555


Q ss_pred             eCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccc
Q 048829          803 IGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLT  882 (976)
Q Consensus       803 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~  882 (976)
                      +++.+..++....+++++.+++++|......      .+..+++|+++++++|  .+..++.          +..+++|+
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~------~~~~l~~L~~l~l~~n--~l~~i~~----------l~~l~~L~  181 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLEDN--QISDIVP----------LAGLTKLQ  181 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSS--CCCCCGG----------GTTCTTCC
T ss_pred             ccccccccccccccccccccccccccccccc------cccccccccccccccc--ccccccc----------ccCCCCCC
Confidence            5555555444444455555555555543321      2345666666666662  3333322          23566777


Q ss_pred             eeeccccCCCccccccccCCCCCCeEeecC
Q 048829          883 SLSIAFFPNLESLSSSIVDLQNLTKLTLYD  912 (976)
Q Consensus       883 ~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~  912 (976)
                      +|++++ +.++++| .+..+++|++|++++
T Consensus       182 ~L~Ls~-N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         182 NLYLSK-NHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCS-SCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             EEECCC-CCCCCCh-hhcCCCCCCEEEccC
Confidence            777776 3566666 566777777777754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=5.2e-13  Score=133.07  Aligned_cols=186  Identities=18%  Similarity=0.231  Sum_probs=143.3

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      .+|+.|++.+|.+.. + +.+..+++|++|++++|. +..++ .+..+++|+++++++| .++.++ .+..+++|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~-i~~~~-~l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQ-ITDLA-PLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSC-CCCCG-GGTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCce-eeccc-cccccccccccccccc-cccccc-ccccccccccccc
Confidence            578888888887654 3 357889999999999965 44443 3778899999999988 455555 3566789999999


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD  858 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~  858 (976)
                      ++|.....  ..+...+.++.+.++++.+........+++|+.|++++|......      .+.++++|++|++++|  .
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~Ls~n--~  184 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTLKADDN--K  184 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSS--C
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhhhhccccccccccccccccccch------hhcccccceecccCCC--c
Confidence            98874432  245677888899988887777666666788999999998775432      3678999999999983  4


Q ss_pred             CccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecC
Q 048829          859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYD  912 (976)
Q Consensus       859 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~  912 (976)
                      +..++.          +..+++|++|++++| .++.++ .+.++++|+.|++++
T Consensus       185 l~~l~~----------l~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISDISP----------LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCGG----------GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE
T ss_pred             cCCChh----------hcCCCCCCEEECcCC-cCCCCc-ccccCCCCCEEEeeC
Confidence            555543          257899999999995 799998 588999999999975

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1e-12  Score=132.63  Aligned_cols=214  Identities=17%  Similarity=0.163  Sum_probs=154.6

Q ss_pred             eEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccc-cccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEEEec
Q 048829          702 KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSS-GLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRLEIY  779 (976)
Q Consensus       702 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~  779 (976)
                      +.++.++... ..+|+.+.  +++++|++++| .++.+|. .|.++++|++|++++|.....++.. +..++.++++.+.
T Consensus        11 ~~i~c~~~~l-~~iP~~l~--~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKV-TEIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSC-SSCCSCSC--SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCC-CCcCCCCC--CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            4566665543 35665443  58999999996 5667754 6889999999999999777766653 4568899999998


Q ss_pred             CCcCcccCC-CcCCCCCccceEEEeCCCCCCcccCCCCCccceee---ecCCCCccchhhhcCCcccccC-cccEEEEec
Q 048829          780 DCKRLEALP-KGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLR---IEGNMGIWKSMIERGRGFHRFS-SLRYLLIRG  854 (976)
Q Consensus       780 ~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~---l~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~  854 (976)
                      .+..+..++ ..+..+++|++++++++.+...+....+.+++.+.   ..++.......    ..+.+++ .++.|++++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~----~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER----NSFVGLSFESVILWLNK  162 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT----TSSTTSBSSCEEEECCS
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc----cccccccccceeeeccc
Confidence            776565554 56799999999999999998887766665555554   34444443333    3455554 788899987


Q ss_pred             cCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCCc--ccccce
Q 048829          855 CDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGLP--SSLLQL  931 (976)
Q Consensus       855 c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~--~~L~~L  931 (976)
                        +.+..++...         ...++++.+....++.++.+|. .+..+++|++|++++ ++++.+|..++.  +.|+.+
T Consensus       163 --n~l~~i~~~~---------~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         163 --NGIQEIHNCA---------FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             --SCCCEECTTT---------TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESS
T ss_pred             --cccccccccc---------ccchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccCHHHHcCCcccccC
Confidence              4666676654         2567777777666689999987 478899999999999 558899886552  344555


Q ss_pred             eecC
Q 048829          932 RIYR  935 (976)
Q Consensus       932 ~i~~  935 (976)
                      ++++
T Consensus       231 ~~~~  234 (242)
T d1xwdc1         231 STYN  234 (242)
T ss_dssp             SEES
T ss_pred             cCCC
Confidence            4443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=7.9e-13  Score=128.37  Aligned_cols=160  Identities=22%  Similarity=0.315  Sum_probs=80.1

Q ss_pred             CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829          699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI  778 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  778 (976)
                      +++++|++++|.+.. + +.+..+++|++|++++| .++.++. +.++++|++|++++|. +..++. +..+++|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-c-cccccCCCcCcCccccc-cccCccc-ccCCcccccccccccc-cccccc-cccccccccccc
Confidence            345555555554432 1 22444555555555554 3333332 4455555555555552 233331 334455555555


Q ss_pred             cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCC
Q 048829          779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD  858 (976)
Q Consensus       779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~  858 (976)
                      ++|.... + ..+..+++|+.|++++|.+..++.                            +..+++|+.|++++|  .
T Consensus       114 ~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~----------------------------l~~~~~L~~L~l~~n--~  161 (199)
T d2omxa2         114 FNNQITD-I-DPLKNLTNLNRLELSSNTISDISA----------------------------LSGLTSLQQLNFSSN--Q  161 (199)
T ss_dssp             CSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCGG----------------------------GTTCTTCSEEECCSS--C
T ss_pred             ccccccc-c-cccchhhhhHHhhhhhhhhccccc----------------------------ccccccccccccccc--c
Confidence            5544222 1 123444555555555444444332                            455666666666652  3


Q ss_pred             CccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeE
Q 048829          859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKL  908 (976)
Q Consensus       859 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L  908 (976)
                      +..++.          +..+++|++|++++| .+++++ .+..+++|+.|
T Consensus       162 l~~l~~----------l~~l~~L~~L~ls~N-~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         162 VTDLKP----------LANLTTLERLDISSN-KVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCCGG----------GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEE
T ss_pred             ccCCcc----------ccCCCCCCEEECCCC-CCCCCc-cccCCCCCCcC
Confidence            333321          246677777777774 577776 46667777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=4.7e-13  Score=131.14  Aligned_cols=166  Identities=19%  Similarity=0.191  Sum_probs=134.6

Q ss_pred             CCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeee
Q 048829          745 NLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRI  824 (976)
Q Consensus       745 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l  824 (976)
                      .+.+|++|++++| .++.++ ++..+++|++|++++|. ++.++ .++.+++|++|++++|.|+.++....+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCcc-ccCcc-ccccCcccccccccccccccccccccccccccccc
Confidence            4679999999999 566665 35678999999999997 56665 46889999999999999999987777899999999


Q ss_pred             cCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCC
Q 048829          825 EGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQN  904 (976)
Q Consensus       825 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~  904 (976)
                      ++|.....      ..+..+++++.++++++  .+..++.          +..+++|+.+++++ +.+..++ .+..+++
T Consensus       120 ~~~~~~~~------~~l~~l~~l~~l~~~~n--~l~~~~~----------~~~l~~L~~l~l~~-n~l~~i~-~l~~l~~  179 (210)
T d1h6ta2         120 EHNGISDI------NGLVHLPQLESLYLGNN--KITDITV----------LSRLTKLDTLSLED-NQISDIV-PLAGLTK  179 (210)
T ss_dssp             TTSCCCCC------GGGGGCTTCCEEECCSS--CCCCCGG----------GGGCTTCSEEECCS-SCCCCCG-GGTTCTT
T ss_pred             cccccccc------ccccccccccccccccc--ccccccc----------cccccccccccccc-ccccccc-cccCCCC
Confidence            99987653      24788999999999983  3333332          24789999999999 5788887 5889999


Q ss_pred             CCeEeecCCCCccccCCCCCcccccceeecC
Q 048829          905 LTKLTLYDCPKLKYFPEKGLPSSLLQLRIYR  935 (976)
Q Consensus       905 L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~  935 (976)
                      |+.|++++| .++.++.-+-.++|++|++++
T Consensus       180 L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKN-HISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred             CCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence            999999996 688887533357899999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=8.3e-13  Score=128.19  Aligned_cols=161  Identities=18%  Similarity=0.206  Sum_probs=105.0

Q ss_pred             CCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeec
Q 048829          746 LCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIE  825 (976)
Q Consensus       746 l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~  825 (976)
                      ++++++|++++| .++.++ ++..+++|++|++++|. +..++ .++.+++|++|++++|.+..++..+.+++|+.|+++
T Consensus        39 l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQ-LTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             hcCCCEEECCCC-CCCCcc-ccccCCCcCcCcccccc-ccCcc-cccCCccccccccccccccccccccccccccccccc
Confidence            455555555555 333332 23445566666666664 33343 256666666666666666666555556677777777


Q ss_pred             CCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCC
Q 048829          826 GNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNL  905 (976)
Q Consensus       826 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L  905 (976)
                      +|......      .+..+++|+.|++++|  .+..++.          +..+++|+.|++.+ +.++.++ .+..+++|
T Consensus       115 ~~~~~~~~------~~~~l~~L~~L~l~~n--~l~~~~~----------l~~~~~L~~L~l~~-n~l~~l~-~l~~l~~L  174 (199)
T d2omxa2         115 NNQITDID------PLKNLTNLNRLELSSN--TISDISA----------LSGLTSLQQLNFSS-NQVTDLK-PLANLTTL  174 (199)
T ss_dssp             SSCCCCCG------GGTTCTTCSEEECCSS--CCCCCGG----------GTTCTTCSEEECCS-SCCCCCG-GGTTCTTC
T ss_pred             cccccccc------ccchhhhhHHhhhhhh--hhccccc----------cccccccccccccc-ccccCCc-cccCCCCC
Confidence            66665432      3567899999999983  3444432          25789999999999 5788887 58899999


Q ss_pred             CeEeecCCCCccccCCCCCcccccce
Q 048829          906 TKLTLYDCPKLKYFPEKGLPSSLLQL  931 (976)
Q Consensus       906 ~~L~l~~c~~l~~i~~~~~~~~L~~L  931 (976)
                      ++|++++| +++.++.-+-.++|++|
T Consensus       175 ~~L~ls~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         175 ERLDISSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             CEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred             CEEECCCC-CCCCCccccCCCCCCcC
Confidence            99999996 58887642223455543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=6.2e-13  Score=116.98  Aligned_cols=95  Identities=25%  Similarity=0.304  Sum_probs=65.9

Q ss_pred             cEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCC
Q 048829          125 RVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDS  204 (976)
Q Consensus       125 r~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~  204 (976)
                      |+|||++|+++.++ .++++++|++|++++|.|+.+|+.++.+++|++|++++ +.+..+| +++++++|++|++++|. 
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccC-ccccccccCeEECCCCc-
Confidence            56777777777665 36777777777777777777777777777777777777 4666665 47777777777777776 


Q ss_pred             cccccc--ccCCCCCCceecc
Q 048829          205 LEETPL--GIGKLTCLQTLCN  223 (976)
Q Consensus       205 ~~~lp~--~i~~L~~L~~L~~  223 (976)
                      +..+|.  .++.+++|++|++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCCCCCchhhcCCCCCCEEEC
Confidence            666653  3666667766654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.1e-14  Score=143.85  Aligned_cols=83  Identities=16%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             CCceEEEEcCCCc--ch-hhhhhhcCCCCCceEEeecCCCccc-ccccccCCCCCcEEEccCCCCCCcc-CCCCCCCCCc
Q 048829          699 PSVKVLDVYGCPK--LE-SIAERLDNNTSLETINISNCENLKI-LSSGLHNLCQLQQIGIGGCGNLESF-PEGGLPCAKL  773 (976)
Q Consensus       699 ~~L~~L~L~~~~~--~~-~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L  773 (976)
                      +.|+.|++++|..  .. .+...+.++++|++|++++|..++. ....+..+++|++|++++|..++.- ...+..+|+|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            5677777766532  22 2334455677777777777766653 3455566777777777777655421 1223456677


Q ss_pred             cEEEecCC
Q 048829          774 RRLEIYDC  781 (976)
Q Consensus       774 ~~L~l~~c  781 (976)
                      +.|++++|
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            77777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.5e-14  Score=144.09  Aligned_cols=154  Identities=17%  Similarity=0.275  Sum_probs=89.4

Q ss_pred             CCceEEEEcCCCcchh-hhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCcc--CCCCCCCCCccE
Q 048829          699 PSVKVLDVYGCPKLES-IAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESF--PEGGLPCAKLRR  775 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~  775 (976)
                      .+|++||+++|.+... +...+..+++|++|++++|......+..+..+++|++|++++|..++..  ......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            5788888888876654 4556788888999999888655555666777888888888888766532  111234678888


Q ss_pred             EEecCCcCccc--CCCcC-CCCCccceEEEeC--CCCCCccc---CCCCCccceeeecCCCCccchhhhcCCcccccCcc
Q 048829          776 LEIYDCKRLEA--LPKGL-HNLTSLQQLTIIG--GELPSLEE---DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSL  847 (976)
Q Consensus       776 L~l~~c~~l~~--~~~~l-~~l~~L~~L~l~~--~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  847 (976)
                      |++++|..+..  +...+ ...+.|+.|++++  ..++....   ...+++|++|++++|...+....   ..+.++++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~---~~l~~~~~L  202 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNYL  202 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTTC
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh---hhhcccCcC
Confidence            88888865532  11112 2235566666654  12221110   01234455555555443332221   234445555


Q ss_pred             cEEEEecc
Q 048829          848 RYLLIRGC  855 (976)
Q Consensus       848 ~~L~l~~c  855 (976)
                      ++|++++|
T Consensus       203 ~~L~L~~C  210 (284)
T d2astb2         203 QHLSLSRC  210 (284)
T ss_dssp             CEEECTTC
T ss_pred             CEEECCCC
Confidence            55555553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.7e-12  Score=114.13  Aligned_cols=103  Identities=23%  Similarity=0.278  Sum_probs=85.9

Q ss_pred             cccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccch--hhhcccc
Q 048829          116 PKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCA--DMGNLIK  193 (976)
Q Consensus       116 ~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~  193 (976)
                      +.+.++++|++|++++|.|+.+|..|+.+++|++|++++|.|+.+| .++++++|++|++++ +.+..+|.  .++.+++
T Consensus        14 ~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          14 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTT
T ss_pred             cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCC-CccCCCCCchhhcCCCC
Confidence            4566999999999999999999999999999999999999999996 599999999999999 57887763  5899999


Q ss_pred             CceeecCCCCCccccccc----cCCCCCCcee
Q 048829          194 LHHLNNSNTDSLEETPLG----IGKLTCLQTL  221 (976)
Q Consensus       194 L~~L~l~~~~~~~~lp~~----i~~L~~L~~L  221 (976)
                      |++|++++|. +...+..    +..+++|+.|
T Consensus        92 L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          92 LVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            9999999998 6554422    3334555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.9e-12  Score=117.87  Aligned_cols=129  Identities=19%  Similarity=0.159  Sum_probs=98.0

Q ss_pred             ccccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchh-
Q 048829           86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPES-  163 (976)
Q Consensus        86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~-  163 (976)
                      +.+.+..++|.|.+.++.       ...++ +++ .+++|++|||++|.|+.++ .|..+++|++|++++|.+..+|.. 
T Consensus        12 ~~~~n~~~lr~L~L~~n~-------I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYK-------IPVIE-NLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             CEEECTTSCEEEECTTSC-------CCSCC-CGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HhccCcCcCcEEECCCCC-------CCccC-ccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccc
Confidence            345566788888777653       23443 455 8889999999999988884 588889999999999999888665 


Q ss_pred             hhccCCccEEecccccchhccch--hhhccccCceeecCCCCCcccccc----ccCCCCCCceecceE
Q 048829          164 VNKLYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLNNSNTDSLEETPL----GIGKLTCLQTLCNFV  225 (976)
Q Consensus       164 i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~~~  225 (976)
                      +..+++|++|++++ +.+..++.  .+..+++|++|++++|. +...|.    .+..+++|++|+...
T Consensus        83 ~~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          83 DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             cccccccccceecc-ccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCC
Confidence            56789999999998 46776654  47888899999999987 777664    377788888886443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.8e-12  Score=118.88  Aligned_cols=109  Identities=25%  Similarity=0.326  Sum_probs=93.8

Q ss_pred             cccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchh-hhccccC
Q 048829          116 PKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKL  194 (976)
Q Consensus       116 ~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L  194 (976)
                      +.+.+...+|.|||++|+|+.+|..+..+++|++|+|++|.|..++ .|..+++|++|++++ +.+..+|.. +..+++|
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQALPDL   89 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHHHCTTC
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccc-ccccCCCcccccccccc
Confidence            3455788999999999999999887788999999999999999994 689999999999999 578888776 5789999


Q ss_pred             ceeecCCCCCcccccc--ccCCCCCCceecceEec
Q 048829          195 HHLNNSNTDSLEETPL--GIGKLTCLQTLCNFVVG  227 (976)
Q Consensus       195 ~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~~  227 (976)
                      ++|++++|. +..++.  .+..+++|++|++....
T Consensus        90 ~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          90 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ccceecccc-ccccccccccccccccchhhcCCCc
Confidence            999999998 887764  48888999988665443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=1.7e-11  Score=117.98  Aligned_cols=110  Identities=17%  Similarity=0.226  Sum_probs=81.8

Q ss_pred             ccccccccCCcccEEEccCCcccc-c-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-h
Q 048829          113 SILPKLLKLQRLRVFSLRGYHISE-L-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-M  188 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~i~~-l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i  188 (976)
                      .+|.+++  +.+++|+|++|.|+. + +..|+++++|++|+|++|.+..+ +..+..+++|++|+|++ +.+..+|.+ |
T Consensus        22 ~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F   98 (192)
T d1w8aa_          22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMF   98 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSS
T ss_pred             ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-ccccccCHHHH
Confidence            4555544  567788888888864 4 45668888888888888888766 45677888888888888 477777554 7


Q ss_pred             hccccCceeecCCCCCccccccc-cCCCCCCceecceEe
Q 048829          189 GNLIKLHHLNNSNTDSLEETPLG-IGKLTCLQTLCNFVV  226 (976)
Q Consensus       189 ~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~  226 (976)
                      .++++|++|+|++|. +..+|++ |..+++|++|++...
T Consensus        99 ~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred             hCCCcccccccCCcc-ccccCHHHhcCCccccccccccc
Confidence            888888888888887 7777766 778888888765433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=3.2e-11  Score=115.98  Aligned_cols=113  Identities=14%  Similarity=0.192  Sum_probs=74.4

Q ss_pred             CCCCceEEEEcCCCcchhh-hhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCcc
Q 048829          697 LPPSVKVLDVYGCPKLESI-AERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLR  774 (976)
Q Consensus       697 ~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~  774 (976)
                      +|+++++|+|++|++...+ +..+.++++|++|++++|......+..+..+++|++|++++| .++.+|. .+..+++|+
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCC
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCccc
Confidence            3467777777777776544 455677777777777776555555666777777777777777 4555544 355577777


Q ss_pred             EEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCc
Q 048829          775 RLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSL  810 (976)
Q Consensus       775 ~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~  810 (976)
                      +|++++|......+..|..+++|++|++++|.+...
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            777777763333344566777777777777666543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.2e-11  Score=138.21  Aligned_cols=89  Identities=21%  Similarity=0.309  Sum_probs=50.3

Q ss_pred             cccccc-cCCcccEEEccCCccc-----cccccccCCCcccEEecCCCCcccc-----chhhh-ccCCccEEecccccch
Q 048829          114 ILPKLL-KLQRLRVFSLRGYHIS-----ELPDSVGDLRYLRYLNLSGTNIRTL-----PESVN-KLYNLHSLLLEDCDRL  181 (976)
Q Consensus       114 ~~~~~~-~l~~Lr~L~Ls~~~i~-----~lp~~~~~L~~L~~L~L~~n~i~~l-----p~~i~-~L~~L~~L~L~~~~~l  181 (976)
                      ....++ .++++|+|+|++|+++     .+...+..+++|++|||++|.|+..     ...+. ...+|++|+|++| .+
T Consensus        18 ~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i   96 (460)
T d1z7xw1          18 RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CL   96 (460)
T ss_dssp             HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CC
T ss_pred             HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC-Cc
Confidence            334444 6677777777777654     2344556666777777777766421     11221 1245777777765 33


Q ss_pred             h-----ccchhhhccccCceeecCCCC
Q 048829          182 K-----KLCADMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       182 ~-----~lp~~i~~L~~L~~L~l~~~~  203 (976)
                      .     .++..+..+++|++|++++|.
T Consensus        97 t~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          97 TGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cccccccccchhhcccccccccccccc
Confidence            2     234445566677777776665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.93  E-value=2.2e-11  Score=117.12  Aligned_cols=101  Identities=20%  Similarity=0.261  Sum_probs=53.2

Q ss_pred             ccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceee
Q 048829          119 LKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLN  198 (976)
Q Consensus       119 ~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~  198 (976)
                      ..+++|++|+|++|+|+.++ .+..+++|++|+|++|.|+.+|..+..+.+|++|++++ +.+..++ .+.++++|++|+
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE-EECCCHH-HHHHHHHSSEEE
T ss_pred             hcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc-ccccccc-cccccccccccc
Confidence            35555555555555555553 35555555555555555555554444455555555555 3444442 355555555555


Q ss_pred             cCCCCCcccccc--ccCCCCCCceecc
Q 048829          199 NSNTDSLEETPL--GIGKLTCLQTLCN  223 (976)
Q Consensus       199 l~~~~~~~~lp~--~i~~L~~L~~L~~  223 (976)
                      +++|. +..++.  .+..+++|++|.+
T Consensus       122 L~~N~-i~~~~~~~~l~~l~~L~~L~L  147 (198)
T d1m9la_         122 MSNNK-ITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             ESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred             cccch-hccccccccccCCCccceeec
Confidence            55554 444442  2555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2e-11  Score=136.26  Aligned_cols=156  Identities=18%  Similarity=0.069  Sum_probs=81.4

Q ss_pred             CCceEEEEcCCCcchh-----hhhhhcCCCCCceEEeecCCCcccc----cccccCCCCCcEEEccCCCCCC----ccCC
Q 048829          699 PSVKVLDVYGCPKLES-----IAERLDNNTSLETINISNCENLKIL----SSGLHNLCQLQQIGIGGCGNLE----SFPE  765 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~-----~~~~~~~l~~L~~L~l~~c~~l~~l----p~~~~~l~~L~~L~l~~~~~l~----~~~~  765 (976)
                      +.++.+++++|.....     ..........++.+++++|......    ...+...+.++.+++++|+.-.    .+..
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            5677788877765432     2334555667888888876543321    2334456778888888774311    1110


Q ss_pred             C-CCCCCCccEEEecCCcCcccC----CCcCCCCCccceEEEeCCCCCCc-----cc--CCCCCccceeeecCCCCccch
Q 048829          766 G-GLPCAKLRRLEIYDCKRLEAL----PKGLHNLTSLQQLTIIGGELPSL-----EE--DGLPTNLHSLRIEGNMGIWKS  833 (976)
Q Consensus       766 ~-~~~~~~L~~L~l~~c~~l~~~----~~~l~~l~~L~~L~l~~~~l~~~-----~~--~~~~~~L~~L~l~~~~~~~~~  833 (976)
                      . ....+.|+.+++++|.....-    ...+...++|++|++++|.|...     ..  ....+.|++|++++|.+....
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~  385 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  385 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH
Confidence            0 122346778888777633221    11223445677777777666431     10  012345666666666554322


Q ss_pred             hhhcCCcccccCcccEEEEec
Q 048829          834 MIERGRGFHRFSSLRYLLIRG  854 (976)
Q Consensus       834 ~~~~~~~~~~l~~L~~L~l~~  854 (976)
                      .......+..+++|++|+|++
T Consensus       386 ~~~l~~~l~~~~~L~~L~Ls~  406 (460)
T d1z7xw1         386 CSSLAATLLANHSLRELDLSN  406 (460)
T ss_dssp             HHHHHHHHHHCCCCCEEECCS
T ss_pred             HHHHHHHHhcCCCCCEEECCC
Confidence            211112344455566666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.90  E-value=4.2e-11  Score=115.08  Aligned_cols=112  Identities=21%  Similarity=0.240  Sum_probs=91.4

Q ss_pred             cccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhc
Q 048829           87 DLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNK  166 (976)
Q Consensus        87 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~  166 (976)
                      .+..+++|+.|.+.++.       ...+ +.+..+++|++|+|++|.|+.+|..+..+++|++|++++|.|+.+ +.+.+
T Consensus        43 sl~~L~~L~~L~Ls~n~-------I~~i-~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~  113 (198)
T d1m9la_          43 TLSTLKACKHLALSTNN-------IEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEK  113 (198)
T ss_dssp             HHHHTTTCCEEECSEEE-------ESCC-CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH-HHHHH
T ss_pred             HHhcccccceeECcccC-------CCCc-ccccCCccccChhhccccccccccccccccccccccccccccccc-ccccc
Confidence            46678899999887653       2233 345599999999999999999987777778999999999999988 45889


Q ss_pred             cCCccEEecccccchhccch--hhhccccCceeecCCCCCccccc
Q 048829          167 LYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLNNSNTDSLEETP  209 (976)
Q Consensus       167 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp  209 (976)
                      +++|++|++++ +.+..++.  .++.+++|++|++++|. +...+
T Consensus       114 l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~  156 (198)
T d1m9la_         114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP-LYNDY  156 (198)
T ss_dssp             HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSH-HHHHH
T ss_pred             ccccccccccc-chhccccccccccCCCccceeecCCCc-cccCc
Confidence            99999999999 57777763  58899999999999997 54443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.4e-09  Score=97.98  Aligned_cols=90  Identities=20%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             ccccccccCCcccEEEccCCc-cccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchhhh
Q 048829          113 SILPKLLKLQRLRVFSLRGYH-ISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMG  189 (976)
Q Consensus       113 ~~~~~~~~l~~Lr~L~Ls~~~-i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~  189 (976)
                      ..|..+..+++|+.|++++++ ++.+ +.+|.++++|++|+|++|+|+.+ |.+|..+++|++|+|++ +.+..+|.++.
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~  100 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTV  100 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTT
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC-CCCcccChhhh
Confidence            445555577788888886654 7777 45678888888888888888877 45677888888888888 57777877755


Q ss_pred             ccccCceeecCCCC
Q 048829          190 NLIKLHHLNNSNTD  203 (976)
Q Consensus       190 ~L~~L~~L~l~~~~  203 (976)
                      ...+|++|++++|.
T Consensus       101 ~~~~l~~L~L~~Np  114 (156)
T d2ifga3         101 QGLSLQELVLSGNP  114 (156)
T ss_dssp             CSCCCCEEECCSSC
T ss_pred             ccccccccccCCCc
Confidence            55578888888776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.1e-09  Score=97.18  Aligned_cols=105  Identities=15%  Similarity=0.044  Sum_probs=88.5

Q ss_pred             CcccEEEccCCccccccccccCCCcccEEecCCC-Cccccc-hhhhccCCccEEecccccchhccc-hhhhccccCceee
Q 048829          122 QRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGT-NIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHLN  198 (976)
Q Consensus       122 ~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n-~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~  198 (976)
                      ....+++.+++++...|..+..+++|++|+++++ .++.++ .+|.++.+|+.|++++ +.+..++ ..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCccccccccccccccee
Confidence            3445688899999999999999999999999876 599995 5699999999999999 5788885 4599999999999


Q ss_pred             cCCCCCccccccccCCCCCCceecceEecC
Q 048829          199 NSNTDSLEETPLGIGKLTCLQTLCNFVVGK  228 (976)
Q Consensus       199 l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~  228 (976)
                      |++|. +..+|.++....+|++|++.....
T Consensus        87 Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          87 LSFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccCCC-CcccChhhhccccccccccCCCcc
Confidence            99999 999999866566788886655443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.46  E-value=1.8e-08  Score=106.62  Aligned_cols=40  Identities=20%  Similarity=0.130  Sum_probs=23.9

Q ss_pred             cccCCCCCccEEEeecCCCCCCC-----C-CcCCCCCCcEEEEccCC
Q 048829          552 QSSLSLSSLKEIEIYKCSSLVSF-----P-EVALPSKLKKIEIRECD  592 (976)
Q Consensus       552 ~~~~~l~~L~~L~l~~c~~l~~l-----~-~~~~~~~L~~L~l~~~~  592 (976)
                      ..+....+|++|+++++ .+..-     . .....++|+.+++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            34556778888888874 44321     1 12335677777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.43  E-value=4.6e-09  Score=111.36  Aligned_cols=231  Identities=14%  Similarity=0.082  Sum_probs=145.5

Q ss_pred             CCceEEEEcCCCcchh----hhhhhcCCCCCceEEeecCCCcc----------cccccccCCCCCcEEEccCCCCCCc--
Q 048829          699 PSVKVLDVYGCPKLES----IAERLDNNTSLETINISNCENLK----------ILSSGLHNLCQLQQIGIGGCGNLES--  762 (976)
Q Consensus       699 ~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~c~~l~----------~lp~~~~~l~~L~~L~l~~~~~l~~--  762 (976)
                      .+++.|+|++|.+...    +...+...++|+.|++++|..-.          .+...+...++|++|++++|..-..  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            6799999999977543    45567788999999999864221          1233455688999999999943221  


Q ss_pred             --cCCCCCCCCCccEEEecCCcCccc----CCC---------cCCCCCccceEEEeCCCCCCcccC------CCCCccce
Q 048829          763 --FPEGGLPCAKLRRLEIYDCKRLEA----LPK---------GLHNLTSLQQLTIIGGELPSLEED------GLPTNLHS  821 (976)
Q Consensus       763 --~~~~~~~~~~L~~L~l~~c~~l~~----~~~---------~l~~l~~L~~L~l~~~~l~~~~~~------~~~~~L~~  821 (976)
                        +...+..+++|++|++++|.....    +..         .....+.|+.+.+++|.+..-...      ...++|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              222223468999999999873211    000         113467899999988877643211      23578999


Q ss_pred             eeecCCCCccchhhh-cCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcc-----c
Q 048829          822 LRIEGNMGIWKSMIE-RGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES-----L  895 (976)
Q Consensus       822 L~l~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l  895 (976)
                      |++++|.+....... ....+..+++|+.|++++|  .++.-   + ......++...++|++|++++|+ ++.     +
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N--~i~~~---g-~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l  263 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHL---G-SSALAIALKSWPNLRELGLNDCL-LSARGAAAV  263 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHH---H-HHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHH
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccc--ccccc---c-cccccccccccccchhhhhhcCc-cCchhhHHH
Confidence            999999876532211 1145778899999999983  22110   0 00111233567889999999964 543     2


Q ss_pred             cccccC--CCCCCeEeecCCCCccc-----cCCC--CCcccccceeecCCc
Q 048829          896 SSSIVD--LQNLTKLTLYDCPKLKY-----FPEK--GLPSSLLQLRIYRCP  937 (976)
Q Consensus       896 ~~~l~~--l~~L~~L~l~~c~~l~~-----i~~~--~~~~~L~~L~i~~c~  937 (976)
                      ...+..  .+.|++|++++|+ ++.     +...  .-.++|+.|+++++.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            223332  4679999999864 543     1110  012578999998875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.2e-07  Score=81.34  Aligned_cols=61  Identities=30%  Similarity=0.244  Sum_probs=27.4

Q ss_pred             cCCCcccEEecCCCCcccc---chhhhccCCccEEecccccchhccch-hhhccccCceeecCCCC
Q 048829          142 GDLRYLRYLNLSGTNIRTL---PESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       142 ~~L~~L~~L~L~~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~  203 (976)
                      ..+++|++|+|++|+|+.+   +..+..+++|++|+|++ |.+..++. ...+..+|++|++++|.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCC
Confidence            3444555555555544433   22344455555555555 34444433 12223345555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.5e-06  Score=79.55  Aligned_cols=84  Identities=25%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             cccccc-cCCcccEEEccCCccccc---cccccCCCcccEEecCCCCccccch-hhhccCCccEEecccccchhccc---
Q 048829          114 ILPKLL-KLQRLRVFSLRGYHISEL---PDSVGDLRYLRYLNLSGTNIRTLPE-SVNKLYNLHSLLLEDCDRLKKLC---  185 (976)
Q Consensus       114 ~~~~~~-~l~~Lr~L~Ls~~~i~~l---p~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp---  185 (976)
                      .++.++ +++.|++|+|++|+|+.+   +..+..+++|++|+|++|.|+.+++ ...+..+|+.|++++| .+....   
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N-pl~~~~~~~  134 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN-SLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS-TTSSSSSSH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC-CcCcCcccc
Confidence            345566 899999999999999876   3557889999999999999999865 3445567999999995 444322   


Q ss_pred             -----hhhhccccCceee
Q 048829          186 -----ADMGNLIKLHHLN  198 (976)
Q Consensus       186 -----~~i~~L~~L~~L~  198 (976)
                           ..+..+++|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                 1255678888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.98  E-value=0.003  Score=57.07  Aligned_cols=83  Identities=17%  Similarity=0.167  Sum_probs=44.4

Q ss_pred             cCCcccEEEccCC-ccc-----cccccccCCCcccEEecCCCCcc-----ccchhhhccCCccEEecccccchhc-----
Q 048829          120 KLQRLRVFSLRGY-HIS-----ELPDSVGDLRYLRYLNLSGTNIR-----TLPESVNKLYNLHSLLLEDCDRLKK-----  183 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~-~i~-----~lp~~~~~L~~L~~L~L~~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-----  183 (976)
                      +.+.|+.|+|+++ .+.     .+-..+...++|++|+|++|.+.     .+...+...+.|++|++++| .+..     
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHH
Confidence            4456666666653 243     12334555566666666666654     12234455566667777664 2322     


Q ss_pred             cchhhhccccCceeecCCCC
Q 048829          184 LCADMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       184 lp~~i~~L~~L~~L~l~~~~  203 (976)
                      +-..+..-+.|++|++++|.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhCCcCCEEECCCCc
Confidence            22234445567777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.96  E-value=0.0032  Score=56.83  Aligned_cols=108  Identities=16%  Similarity=0.144  Sum_probs=72.2

Q ss_pred             CCCCccEeccccccCCCCCCCccc----cccccccCCcccEEEccCCcccc-----ccccccCCCcccEEecCCCCccc-
Q 048829           90 DIQHLRTFLPVMLTDSSPGYLAPS----ILPKLLKLQRLRVFSLRGYHISE-----LPDSVGDLRYLRYLNLSGTNIRT-  159 (976)
Q Consensus        90 ~~~~Lr~L~~~~~~~~~~~~~~~~----~~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~~~~L~~L~~L~L~~n~i~~-  159 (976)
                      +.+.|+.|.+.+..     .+...    +...+...+.|++|+|++|.+..     +...+...+.|++|+|++|.|.. 
T Consensus        13 n~~~L~~L~L~~~~-----~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          13 DDTDLKEVNINNMK-----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             TCSSCCEEECTTCC-----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             CCCCCcEEEeCCCC-----CCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            34677777765432     12222    22233367889999999998762     34456667899999999998873 


Q ss_pred             ----cchhhhccCCccEEecccccchh--------ccchhhhccccCceeecCCCC
Q 048829          160 ----LPESVNKLYNLHSLLLEDCDRLK--------KLCADMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       160 ----lp~~i~~L~~L~~L~L~~~~~l~--------~lp~~i~~L~~L~~L~l~~~~  203 (976)
                          +-..+..-+.|++|++++| ...        .+...+..-+.|+.|+++.+.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n-~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCC-cCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                2345667788999999874 322        234445667889999887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.11  E-value=0.0043  Score=55.99  Aligned_cols=81  Identities=19%  Similarity=0.200  Sum_probs=40.3

Q ss_pred             cCCcccEEEccCC-ccc-----cccccccCCCcccEEecCCCCccc-----cchhhhccCCccEEecccccc----hhcc
Q 048829          120 KLQRLRVFSLRGY-HIS-----ELPDSVGDLRYLRYLNLSGTNIRT-----LPESVNKLYNLHSLLLEDCDR----LKKL  184 (976)
Q Consensus       120 ~l~~Lr~L~Ls~~-~i~-----~lp~~~~~L~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~----l~~l  184 (976)
                      +.+.|+.|+|+++ .++     .+-..+...++|+.|+|++|.+..     +-..+...+.++.+++++|..    ...+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4456666666652 343     123344455666666666665541     223345556666666665421    1222


Q ss_pred             chhhhccccCceeecC
Q 048829          185 CADMGNLIKLHHLNNS  200 (976)
Q Consensus       185 p~~i~~L~~L~~L~l~  200 (976)
                      ...+...++|+.+++.
T Consensus        95 ~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          95 VEALQSNTSLIELRID  110 (166)
T ss_dssp             HHGGGGCSSCCEEECC
T ss_pred             HHHHHhCccccEEeec
Confidence            2334555566654443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.92  E-value=0.012  Score=52.95  Aligned_cols=109  Identities=16%  Similarity=0.158  Sum_probs=73.6

Q ss_pred             CCCCccEeccccccCCCCCCCcccc----ccccccCCcccEEEccCCcccc-----ccccccCCCcccEEecCCCCcc--
Q 048829           90 DIQHLRTFLPVMLTDSSPGYLAPSI----LPKLLKLQRLRVFSLRGYHISE-----LPDSVGDLRYLRYLNLSGTNIR--  158 (976)
Q Consensus        90 ~~~~Lr~L~~~~~~~~~~~~~~~~~----~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~~~~L~~L~~L~L~~n~i~--  158 (976)
                      +.+.|+.|.+.+...     +....    ...+...++|+.|+|++|.++.     +-..+...+.+++|++++|.+.  
T Consensus        15 ~~~~L~~L~L~~~~~-----i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          15 NDPDLEEVNLNNIMN-----IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TCTTCCEEECTTCTT-----CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             cCCCCcEEEcCCCCC-----CCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            456777776644321     22222    2223378899999999998752     3456677889999999999875  


Q ss_pred             ---ccchhhhccCCccEEecccc-cch-----hccchhhhccccCceeecCCCC
Q 048829          159 ---TLPESVNKLYNLHSLLLEDC-DRL-----KKLCADMGNLIKLHHLNNSNTD  203 (976)
Q Consensus       159 ---~lp~~i~~L~~L~~L~L~~~-~~l-----~~lp~~i~~L~~L~~L~l~~~~  203 (976)
                         .+-..+...+.|+.++|+.+ +.+     ..+...+.+.++|++|++..+.
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence               33456778899998777543 233     2355557788999999998765