Psyllid ID: psy10000

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF
Secondary Structure (PSIPRED)
ccHHHHHHHccccEEEEEcccccccccccEEEEEEccccccccHHHHHHHcccccEEEcccccccccccEEEEEccccccccHHcccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEEEEEEcccEEEEEEEEEEEEEcccccccccccEEEEcEEccccccEEEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHcccEEEEEccccHHHHHHHHHHHHHcccccccHHHHHHHHHccccEEccccccccccccEEEEEccccccccHHHccccEEccccccccEEEEEEEEEEEEEEEcccccEEEEEHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccccEEEEEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
maeqnersfqkqpTVFLNRKKGLSKKRKELRYFrdvglgfkspreterafqkqptiflarkptykkkslryhktvglgfktpreaidgtyidkkcpftgnvsirGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKrhrnmsvhlspafrdveigdvvtvgecrplsktvrfnvlkvtkgtgskkAFKKF
Flexible Loop (DISEMBL)
maeqnersfqkqptvflnrkkglskkrkelryfrdvglgfkspreterafqkqptiflarkptykkkslryhktvglgfktpreaidgtyidkkcpftgnvsirgrILIGIVRKMKMQRTIVIRRDYLHYIKKYNrfekrhrnmsvhlspafrdveigDVVTVgecrplsktvrfnvlkvtkgtgskkafkkf
Low Complexity Region (SEG)
MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF
Disordered region (IsUnstruct)
*****************************LRYFRDVGLGF************QPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVT************
Disordered Region (DISOPRED)
************PTVF**************RYFRDVGLGFKSPRETERAFQKQPT***************YHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKG*******K*F
Disordered Region (DISEMBL)
************PTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF
Disordered Region (DISPRO)
******RSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKG**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
P41115	158	40S ribosomal protein S11	N/A	N/A	0.772	0.943	0.792	4e-66
P62282	158	40S ribosomal protein S11	yes	N/A	0.772	0.943	0.785	1e-65
P62281	158	40S ribosomal protein S11	yes	N/A	0.772	0.943	0.785	1e-65
P61270	158	40S ribosomal protein S11	N/A	N/A	0.772	0.943	0.785	1e-65
P62280	158	40S ribosomal protein S11	yes	N/A	0.772	0.943	0.785	1e-65
Q3T0V4	158	40S ribosomal protein S11	yes	N/A	0.772	0.943	0.785	1e-65
Q9XSU4	158	40S ribosomal protein S11	yes	N/A	0.772	0.943	0.785	3e-65
P52812	153	40S ribosomal protein S11	yes	N/A	0.787	0.993	0.756	6e-63
Q292D0	155	40S ribosomal protein S11	no	N/A	0.772	0.961	0.769	7e-62
Q6XHX5	155	40S ribosomal protein S11	N/A	N/A	0.772	0.961	0.75	2e-60

>sp|P41115|RS11_XENLA 40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1

 Score =  250 bits (639), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/154 (79%), Positives = 136/154 (88%), Gaps = 5/154 (3%)

Query: 45  ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TERA+QKQPTIF  +K      T K+K  RY+++VGLGFKTPREAIDGTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTPREAIDGTYIDKKCPFTG 64

Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV++GD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGD 124

Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
            VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 125 TVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

Xenopus laevis (taxid: 8355)

>sp|P62282|RS11_RAT 40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 136/154 (88%), Gaps = 5/154 (3%)

Query: 45  ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

Rattus norvegicus (taxid: 10116)

>sp|P62281|RS11_MOUSE 40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 136/154 (88%), Gaps = 5/154 (3%)

Query: 45  ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

Mus musculus (taxid: 10090)

>sp|P61270|RS11_MACFA 40S ribosomal protein S11 OS=Macaca fascicularis GN=RPS11 PE=2 SV=3

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 136/154 (88%), Gaps = 5/154 (3%)

Query: 45  ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

Macaca fascicularis (taxid: 9541)

>sp|P62280|RS11_HUMAN 40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 136/154 (88%), Gaps = 5/154 (3%)

Query: 45  ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

Homo sapiens (taxid: 9606)

>sp|Q3T0V4|RS11_BOVIN 40S ribosomal protein S11 OS=Bos taurus GN=RPS11 PE=2 SV=3

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 136/154 (88%), Gaps = 5/154 (3%)

Query: 45  ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

Bos taurus (taxid: 9913)

>sp|Q9XSU4|RS11_CANFA 40S ribosomal protein S11 OS=Canis familiaris GN=RPS11 PE=1 SV=2

 Score =  248 bits (632), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 135/154 (87%), Gaps = 5/154 (3%)

Query: 45  ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVHIGD 124

Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

Canis familiaris (taxid: 9615)

>sp|P52812|RS11_ANOGA 40S ribosomal protein S11 OS=Anopheles gambiae GN=RpS11 PE=2 SV=2

 Score =  239 bits (611), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 130/152 (85%)

Query: 42  SPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNV 101
           + ++  RAFQKQ  I L RK   +KK LR H ++GLGFKTP+EAI GTYIDKKCPFTG++
Sbjct: 2   ADQQNIRAFQKQLGINLNRKNVSRKKGLRMHHSIGLGFKTPKEAITGTYIDKKCPFTGHI 61

Query: 102 SIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVV 161
           SIRGRIL G+VRKMKM RTIVIRRDYLH+I+KY+RFEKRHRNMSVHLSP FRDVE GD+V
Sbjct: 62  SIRGRILTGVVRKMKMHRTIVIRRDYLHFIRKYDRFEKRHRNMSVHLSPCFRDVEAGDIV 121

Query: 162 TVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           TVGECRPLSKTVRFNVLKV+K  GSKK F KF
Sbjct: 122 TVGECRPLSKTVRFNVLKVSKMAGSKKKFSKF 153

Anopheles gambiae (taxid: 7165)

>sp|Q292D0|RS11_DROPS 40S ribosomal protein S11 OS=Drosophila pseudoobscura pseudoobscura GN=RpS11 PE=3 SV=2

 Score =  236 bits (602), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 132/152 (86%), Gaps = 3/152 (1%)

Query: 45  ETERAFQKQPTIFLARK---PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNV 101
           + ERAFQKQ  + L RK      KKK LR ++ VGLGFKTPREAIDGTYIDKKCP+TG+V
Sbjct: 4   QNERAFQKQFGVNLNRKVKPGVTKKKILRRYRDVGLGFKTPREAIDGTYIDKKCPWTGDV 63

Query: 102 SIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVV 161
            IRGRILIG+VRK KMQRTIVIRRDYLH+++KY+RFEKRHRNMSVH SPAFRDVE GD+V
Sbjct: 64  RIRGRILIGVVRKTKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIV 123

Query: 162 TVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           T+GECRPLSKTVRFNVLKV KG G+KK+FKKF
Sbjct: 124 TIGECRPLSKTVRFNVLKVNKGQGAKKSFKKF 155

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q6XHX5|RS11_DROYA 40S ribosomal protein S11 OS=Drosophila yakuba GN=RpS11 PE=2 SV=1

 Score =  231 bits (589), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 130/152 (85%), Gaps = 3/152 (1%)

Query: 45  ETERAFQKQPTIFLARK---PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNV 101
           + ERAFQKQ  + L RK      KKK LR  + VGLGFKTPREAIDGTYIDKKCP+TG+V
Sbjct: 4   QNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDV 63

Query: 102 SIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVV 161
            IRGRIL G+VRK KMQRTIVIRRDYLH+++KY+RFEKRHRNMSVH SP FRDVE GD+V
Sbjct: 64  RIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIV 123

Query: 162 TVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           T+GECRPLSKTVRFNVLKV+KG G+KK+FKK+
Sbjct: 124 TIGECRPLSKTVRFNVLKVSKGQGAKKSFKKY 155

Drosophila yakuba (taxid: 7245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
149898798	194	40S ribosomal protein S11 [Triatoma infe	0.994	0.989	0.830	6e-88
270010086	194	hypothetical protein TcasGA2_TC009438 [T	0.948	0.943	0.831	5e-83
357627868	195	40S ribosomal protein S11 [Danaus plexip	0.932	0.923	0.818	4e-82
390358152	194	PREDICTED: 40S ribosomal protein S11-lik	0.989	0.984	0.709	2e-71
195381291	196	GJ21555 [Drosophila virilis] gi|19414418	0.984	0.969	0.711	4e-71
195149758	196	GL11264 [Drosophila persimilis] gi|19845	0.984	0.969	0.701	1e-70
195436275	196	GK22117 [Drosophila willistoni] gi|19416	0.984	0.969	0.701	3e-70
240849484	152	40S ribosomal protein S11 [Acyrthosiphon	0.772	0.980	0.859	3e-70
195056622	196	GH22980 [Drosophila grimshawi] gi|193899	0.994	0.979	0.705	4e-70
121543849	152	putative ribosomal protein S11 [Maconell	0.772	0.980	0.865	6e-70

>gi|149898798|gb|ABR27861.1| 40S ribosomal protein S11 [Triatoma infestans]

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 162/195 (83%), Positives = 179/195 (91%), Gaps = 3/195 (1%)

Query: 1   MAEQNERSFQKQPTVFLNRKKGLSKKRKE--LRYFRDVGLGFKSPRETERAFQKQPTIFL 58
           MA+Q ERSFQKQPT+FLNRKKGL  K+K   LRY R+VGLGFK+PRETE+AFQKQP +FL
Sbjct: 1   MADQTERSFQKQPTIFLNRKKGLGVKKKANALRYIRNVGLGFKTPRETEKAFQKQPHVFL 60

Query: 59  ARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQ 118
           A K +  KK LR +K+VGLGFKTPREAI+GTYIDKKCPFTGNVSIRGRIL G+V+KMKMQ
Sbjct: 61  ASKVS-SKKPLRRYKSVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQ 119

Query: 119 RTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVL 178
           RTIVIRRDYLHY++KYNRFEKRH+NMSVHLSP FRDVEIGDVVTVGECRPLSKTVRFNVL
Sbjct: 120 RTIVIRRDYLHYVRKYNRFEKRHKNMSVHLSPCFRDVEIGDVVTVGECRPLSKTVRFNVL 179

Query: 179 KVTKGTGSKKAFKKF 193
           KVTKGTG+KKAFKKF
Sbjct: 180 KVTKGTGAKKAFKKF 194

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010086|gb|EFA06534.1| hypothetical protein TcasGA2_TC009438 [Tribolium castaneum]

 Score =  312 bits (799), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 167/184 (90%), Gaps = 1/184 (0%)

Query: 1   MAEQNERSFQKQPTVFLNRKKGLS-KKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLA 59
           MA+QNERSFQ+QPTVFLNRKKGL  K+RK LRY R+VGLGFK+PRETERAFQ+Q  I + 
Sbjct: 1   MADQNERSFQRQPTVFLNRKKGLGGKRRKSLRYHREVGLGFKTPRETERAFQRQHGINVN 60

Query: 60  RKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQR 119
           RK   KKK LR  + VGLGFKTPREAI+G+YIDKKCPFTGNVSIRGRIL G+V+KMKMQR
Sbjct: 61  RKAGLKKKVLRLSRNVGLGFKTPREAIEGSYIDKKCPFTGNVSIRGRILTGVVQKMKMQR 120

Query: 120 TIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLK 179
           TIVIRRDYLHYI+KYNRFEKRHRNMSVHLSP FRDVEIGDVVT+GECRPLSKTVRFNVLK
Sbjct: 121 TIVIRRDYLHYIRKYNRFEKRHRNMSVHLSPCFRDVEIGDVVTIGECRPLSKTVRFNVLK 180

Query: 180 VTKG 183
           VTKG
Sbjct: 181 VTKG 184

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627868|gb|EHJ77408.1| 40S ribosomal protein S11 [Danaus plexippus]

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 149/182 (81%), Positives = 165/182 (90%), Gaps = 2/182 (1%)

Query: 1   MAEQNERSFQKQPTVFLNRKKGLSKKR--KELRYFRDVGLGFKSPRETERAFQKQPTIFL 58
           MA+Q ERSFQKQPTVFLNRKKG+  KR  K LRY +DVGLGFK+PRETE+AFQKQ T+FL
Sbjct: 1   MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPRETEKAFQKQATVFL 60

Query: 59  ARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQ 118
            RK   K+K +R+HK VGLGFKTPREAI+GTYIDKKCPFTGNVSIRGRIL G+V+KMKMQ
Sbjct: 61  NRKGGLKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQ 120

Query: 119 RTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVL 178
           RTIVIRRDYLHY+ KYNRFEKRHRNMSVHLSP FRDVE+GD+VT+GECRPLSKTVRFNVL
Sbjct: 121 RTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVELGDIVTIGECRPLSKTVRFNVL 180

Query: 179 KV 180
           KV
Sbjct: 181 KV 182

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390358152|ref|XP_784254.2| PREDICTED: 40S ribosomal protein S11-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 157/196 (80%), Gaps = 5/196 (2%)

Query: 1   MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLAR 60
           MA+Q+ER+FQKQPTVF N K+ L+  +K  R  R+VGLGFK+P  +ERAFQKQPT+F   
Sbjct: 1   MADQSERAFQKQPTVFQNNKRLLASNKKANRLVRNVGLGFKTP--SERAFQKQPTVFQNN 58

Query: 61  K--PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQ 118
           K      KK+ R  + VGLGFKTP EA DG YIDKKCPFTGNV IRGRIL G++ KMKMQ
Sbjct: 59  KRLLASNKKANRLVRNVGLGFKTPAEARDGHYIDKKCPFTGNVHIRGRILTGVITKMKMQ 118

Query: 119 RTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVL 178
           RTIVIRRDYLHYIKKYNRFEKRH+ MSVHLSP FRD + GD+VTVGECRPLSKTVRFNVL
Sbjct: 119 RTIVIRRDYLHYIKKYNRFEKRHKTMSVHLSPCFRDTKTGDIVTVGECRPLSKTVRFNVL 178

Query: 179 KVTKGTGS-KKAFKKF 193
           KVT+  GS KK F KF
Sbjct: 179 KVTQAPGSAKKQFAKF 194

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|195381291|ref|XP_002049387.1| GJ21555 [Drosophila virilis] gi|194144184|gb|EDW60580.1| GJ21555 [Drosophila virilis]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 161/194 (82%), Gaps = 4/194 (2%)

Query: 3   EQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARK- 61
           +Q ER+F+KQ +V   R+K  + K K LR++R +GLGFK P E ERAFQKQ  + L RK 
Sbjct: 4   QQTERAFRKQHSVPTTRRKSANGK-KRLRFYRQIGLGFKIPAENERAFQKQFGVNLNRKV 62

Query: 62  --PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQR 119
                KKK LR ++ VGLGFKTPREAIDGTYIDKKCP+TGNV IRGRIL G+VRK KMQR
Sbjct: 63  KPGVTKKKVLRRYRDVGLGFKTPREAIDGTYIDKKCPWTGNVRIRGRILTGVVRKTKMQR 122

Query: 120 TIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLK 179
           TIVIRRDYLH+++KY+RFEKRHRNMSVH SPAFRDVE GD+VT+GECRPLSKTVRFNVLK
Sbjct: 123 TIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECRPLSKTVRFNVLK 182

Query: 180 VTKGTGSKKAFKKF 193
           V+KG G+KK+FKKF
Sbjct: 183 VSKGQGAKKSFKKF 196

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195149758|ref|XP_002015823.1| GL11264 [Drosophila persimilis] gi|198456530|ref|XP_001360357.2| GA21371 [Drosophila pseudoobscura pseudoobscura] gi|194109670|gb|EDW31713.1| GL11264 [Drosophila persimilis] gi|198135646|gb|EAL24932.2| GA21371 [Drosophila pseudoobscura pseudoobscura]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 136/194 (70%), Positives = 162/194 (83%), Gaps = 4/194 (2%)

Query: 3   EQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARK- 61
           +Q ER+F+KQ  V   R+K ++ K++  R++R +GLGFK+P E ERAFQKQ  + L RK 
Sbjct: 4   QQTERAFRKQHAVATVRRKSINLKKRP-RFYRQIGLGFKAPAENERAFQKQFGVNLNRKV 62

Query: 62  --PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQR 119
                KKK LR ++ VGLGFKTPREAIDGTYIDKKCP+TG+V IRGRILIG+VRK KMQR
Sbjct: 63  KPGVTKKKILRRYRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILIGVVRKTKMQR 122

Query: 120 TIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLK 179
           TIVIRRDYLH+++KY+RFEKRHRNMSVH SPAFRDVE GD+VT+GECRPLSKTVRFNVLK
Sbjct: 123 TIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECRPLSKTVRFNVLK 182

Query: 180 VTKGTGSKKAFKKF 193
           V KG G+KK+FKKF
Sbjct: 183 VNKGQGAKKSFKKF 196

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195436275|ref|XP_002066094.1| GK22117 [Drosophila willistoni] gi|194162179|gb|EDW77080.1| GK22117 [Drosophila willistoni]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/194 (70%), Positives = 162/194 (83%), Gaps = 4/194 (2%)

Query: 3   EQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARK- 61
           +Q ER+F+KQ  V   R+K ++ K++  R++R +GLGFK+P E ERAFQKQ  + L RK 
Sbjct: 4   QQTERAFRKQHAVPTVRRKSVNAKKRP-RFYRQIGLGFKAPAENERAFQKQYGVNLNRKV 62

Query: 62  --PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQR 119
                KKK LR ++ VGLGFKTPREAIDGTYIDKKCP+TG+V IRGRIL GIVRK KMQR
Sbjct: 63  KPGVTKKKLLRRYRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGIVRKTKMQR 122

Query: 120 TIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLK 179
           TIVIRRDYLH+++KY+RFEKRHRNMSVH SPAFRDVE GD+VT+GECRPLSKTVRFNVLK
Sbjct: 123 TIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECRPLSKTVRFNVLK 182

Query: 180 VTKGTGSKKAFKKF 193
           V+KG G+KK+FKKF
Sbjct: 183 VSKGVGAKKSFKKF 196

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849484|ref|NP_001155823.1| 40S ribosomal protein S11 [Acyrthosiphon pisum] gi|239787971|dbj|BAH70684.1| ACYPI009948 [Acyrthosiphon pisum]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/149 (85%), Positives = 140/149 (93%)

Query: 45  ETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIR 104
           +TE+AFQKQPT+FL RK + KKK LR++++VGLGFKTPREAIDGTYIDKKCPFTGNVSIR
Sbjct: 4   QTEKAFQKQPTVFLNRKESKKKKPLRHYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIR 63

Query: 105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVG 164
           GRIL G VRKMKMQRTIVIRRDYLHYI KYNRFEKRH+NMSVHLSP FRDVEIGD+VT+G
Sbjct: 64  GRILTGTVRKMKMQRTIVIRRDYLHYISKYNRFEKRHKNMSVHLSPCFRDVEIGDIVTIG 123

Query: 165 ECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           ECRPLSKTVRFNVLKVTKGTG+KK FKKF
Sbjct: 124 ECRPLSKTVRFNVLKVTKGTGAKKGFKKF 152

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195056622|ref|XP_001995133.1| GH22980 [Drosophila grimshawi] gi|193899339|gb|EDV98205.1| GH22980 [Drosophila grimshawi]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 161/197 (81%), Gaps = 5/197 (2%)

Query: 1   MAEQN-ERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLA 59
           MA+Q  ER+F KQ  V   R+K ++ K K LR  R +GLGFK+P E ERAFQKQ  + L 
Sbjct: 1   MADQQMERAFCKQNAVPTTRRKSVNAK-KRLRLHRQIGLGFKTPAENERAFQKQFGVNLN 59

Query: 60  RK---PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMK 116
           RK      KKK LR ++ VGLGFKTPREAIDGTYIDKKCP+TG+V IRGRIL G+VRK K
Sbjct: 60  RKVKPGITKKKVLRRYRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKTK 119

Query: 117 MQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFN 176
           MQRTIVIRRDYLH+++KY+RFEKRHRNMSVH SPAFRDVE GD+VT+GECRPLSKTVRFN
Sbjct: 120 MQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECRPLSKTVRFN 179

Query: 177 VLKVTKGTGSKKAFKKF 193
           VLKV+KG G+KK+FKKF
Sbjct: 180 VLKVSKGQGAKKSFKKF 196

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543849|gb|ABM55589.1| putative ribosomal protein S11 [Maconellicoccus hirsutus]

 Score =  268 bits (686), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 139/149 (93%)

Query: 45  ETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIR 104
           + ERAFQKQPT+FL RK   KKK LRY+K VGLGFKTPREAI+GTYIDKKCPFTGNVSIR
Sbjct: 4   QNERAFQKQPTVFLNRKFNTKKKKLRYYKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 63

Query: 105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVG 164
           GRIL G+V+KMKMQRTIVIRRDYLHYIKKYNRFEKRH+NMSVHLSP FRDVEIGDVVT+G
Sbjct: 64  GRILTGVVQKMKMQRTIVIRRDYLHYIKKYNRFEKRHKNMSVHLSPCFRDVEIGDVVTIG 123

Query: 165 ECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           ECRPLSKTVRFNVLKVTKG G+KK+FKKF
Sbjct: 124 ECRPLSKTVRFNVLKVTKGQGAKKSFKKF 152

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
UNIPROTKB|Q9DF27	161	RS11 "40S ribosomal protein S1	0.772	0.925	0.789	1.4e-62
UNIPROTKB|Q3T0V4	158	RPS11 "40S ribosomal protein S	0.772	0.943	0.785	6.2e-62
UNIPROTKB|F2Z4N5	158	RPS11 "40S ribosomal protein S	0.772	0.943	0.785	6.2e-62
UNIPROTKB|P62280	158	RPS11 "40S ribosomal protein S	0.772	0.943	0.785	6.2e-62
UNIPROTKB|F2Z4Y8	158	RPS11 "Uncharacterized protein	0.772	0.943	0.785	6.2e-62
MGI|MGI:1351329	158	Rps11 "ribosomal protein S11"	0.772	0.943	0.785	6.2e-62
RGD|621026	158	Rps11 "ribosomal protein S11"	0.772	0.943	0.785	6.2e-62
UNIPROTKB|A2Q0S6	161	rpS11 "Ribosomal protein S11"	0.772	0.925	0.777	7.9e-62
ZFIN|ZDB-GENE-040426-2701	159	rps11 "ribosomal protein S11"	0.772	0.937	0.787	1e-61
UNIPROTKB|Q9XSU4	158	RPS11 "40S ribosomal protein S	0.772	0.943	0.785	1e-61

UNIPROTKB|Q9DF27 RS11 "40S ribosomal protein S11" [Salmo salar (taxid:8030)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 124/157 (78%), Positives = 136/157 (86%)

Query:    45 ETERAFQKQPTIFLARKPTY--------KKKSLRYHKTVGLGFKTPREAIDGTYIDKKCP 96
             +TERA+QKQPTIF  +K           K+K  RYHK+VGLGFKTPREAIDGTYIDKKCP
Sbjct:     5 QTERAYQKQPTIFQNKKRVLVGEGGKEAKEKLPRYHKSVGLGFKTPREAIDGTYIDKKCP 64

Query:    97 FTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVE 156
             FTGNVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSPAFRDV 
Sbjct:    65 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPAFRDVS 124

Query:   157 IGDVVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +GD+VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 VGDIVTVGECRPLSKTVRFNVLKVTKAAGAKKQFQKF 161

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|Q3T0V4 RPS11 "40S ribosomal protein S11" [Bos taurus (taxid:9913)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 121/154 (78%), Positives = 136/154 (88%)

Query:    45 ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
             +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct:     5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query:   100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
             NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct:    65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query:   160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4N5 RPS11 "40S ribosomal protein S11" [Canis lupus familiaris (taxid:9615)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 121/154 (78%), Positives = 136/154 (88%)

Query:    45 ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
             +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct:     5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query:   100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
             NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct:    65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query:   160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62280 RPS11 "40S ribosomal protein S11" [Homo sapiens (taxid:9606)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 121/154 (78%), Positives = 136/154 (88%)

Query:    45 ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
             +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct:     5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query:   100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
             NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct:    65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query:   160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=NAS

GO:0006412 "translation" evidence=IC;NAS;TAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z4Y8 RPS11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 121/154 (78%), Positives = 136/154 (88%)

Query:    45 ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
             +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct:     5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query:   100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
             NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct:    65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query:   160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1351329 Rps11 "ribosomal protein S11" [Mus musculus (taxid:10090)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 121/154 (78%), Positives = 136/154 (88%)

Query:    45 ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
             +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct:     5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query:   100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
             NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct:    65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query:   160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621026 Rps11 "ribosomal protein S11" [Rattus norvegicus (taxid:10116)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 121/154 (78%), Positives = 136/154 (88%)

Query:    45 ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
             +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct:     5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query:   100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
             NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct:    65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124

Query:   160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019843 "rRNA binding" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

UNIPROTKB|A2Q0S6 rpS11 "Ribosomal protein S11" [Solea senegalensis (taxid:28829)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 122/157 (77%), Positives = 135/157 (85%)

Query:    45 ETERAFQKQPTIFLARKPTY--------KKKSLRYHKTVGLGFKTPREAIDGTYIDKKCP 96
             +TERA+QKQPTIF  +K           K+K  RYHK+VGLGFKTPREAIDGTYIDKKCP
Sbjct:     5 QTERAYQKQPTIFQNKKRVLATDGGKEAKEKLPRYHKSVGLGFKTPREAIDGTYIDKKCP 64

Query:    97 FTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVE 156
             FTGNVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+N+SVHLSP FRDV 
Sbjct:    65 FTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNLSVHLSPCFRDVS 124

Query:   157 IGDVVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +GD+VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 VGDIVTVGECRPLSKTVRFNVLKVTKAAGAKKQFQKF 161

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

ZFIN|ZDB-GENE-040426-2701 rps11 "ribosomal protein S11" [Danio rerio (taxid:7955)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 122/155 (78%), Positives = 135/155 (87%)

Query:    45 ETERAFQKQPTIF------LARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFT 98
             + ERA+QKQPTIF      LA + + K+K  RYH+ VGLGFKTPREAIDGTYIDKKCPFT
Sbjct:     5 QNERAYQKQPTIFQNKKRVLAVEGSGKEKLPRYHRNVGLGFKTPREAIDGTYIDKKCPFT 64

Query:    99 GNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIG 158
             GNVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV +G
Sbjct:    65 GNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVTVG 124

Query:   159 DVVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             D+VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 DIVTVGECRPLSKTVRFNVLKVTKAAGAKKQFQKF 159

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q9XSU4 RPS11 "40S ribosomal protein S11" [Canis lupus familiaris (taxid:9615)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 121/154 (78%), Positives = 135/154 (87%)

Query:    45 ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
             +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct:     5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64

Query:   100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
             NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV IGD
Sbjct:    65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVHIGD 124

Query:   160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
             +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct:   125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61270	RS11_MACFA	No assigned EC number	0.7857	0.7720	0.9430	N/A	N/A
O65569	RS112_ARATH	No assigned EC number	0.6298	0.7512	0.9119	yes	N/A
Q6XHX5	RS11_DROYA	No assigned EC number	0.75	0.7720	0.9612	N/A	N/A
Q0E9B6	RS11_DROME	No assigned EC number	0.75	0.7720	0.9612	yes	N/A
P41115	RS11_XENLA	No assigned EC number	0.7922	0.7720	0.9430	N/A	N/A
P62280	RS11_HUMAN	No assigned EC number	0.7857	0.7720	0.9430	yes	N/A
P62281	RS11_MOUSE	No assigned EC number	0.7857	0.7720	0.9430	yes	N/A
P62282	RS11_RAT	No assigned EC number	0.7857	0.7720	0.9430	yes	N/A
Q3T0V4	RS11_BOVIN	No assigned EC number	0.7857	0.7720	0.9430	yes	N/A
P0CX48	RS11B_YEAST	No assigned EC number	0.6533	0.7668	0.9487	yes	N/A
P17093	RS11_SOYBN	No assigned EC number	0.6428	0.7512	0.9119	yes	N/A
Q292D0	RS11_DROPS	No assigned EC number	0.7697	0.7720	0.9612	no	N/A
P0CX47	RS11A_YEAST	No assigned EC number	0.6533	0.7668	0.9487	yes	N/A
P52812	RS11_ANOGA	No assigned EC number	0.7565	0.7875	0.9934	yes	N/A
Q9XSU4	RS11_CANFA	No assigned EC number	0.7857	0.7720	0.9430	yes	N/A
P79013	RS11_SCHPO	No assigned EC number	0.6644	0.7512	0.9539	yes	N/A
Q54S90	RS11_DICDI	No assigned EC number	0.6118	0.7668	0.9548	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	193
PTZ00241	158	PTZ00241, PTZ00241, 40S ribosomal protein S11; Pro	1e-74
PRK08572	108	PRK08572, rps17p, 30S ribosomal protein S17P; Revi	1e-35
TIGR03630	102	TIGR03630, arch_S17P, archaeal ribosomal protein S	3e-33
pfam00366	69	pfam00366, Ribosomal_S17, Ribosomal protein S17	5e-26
COG0186	87	COG0186, RpsQ, Ribosomal protein S17 [Translation,	5e-24
PRK05610	84	PRK05610, rpsQ, 30S ribosomal protein S17; Reviewe	7e-08
TIGR03635	71	TIGR03635, S17_bact, 30S ribosomal protein S17	7e-08
CHL00142	84	CHL00142, rps17, ribosomal protein S17; Validated	4e-05

>gnl|CDD|240326 PTZ00241, PTZ00241, 40S ribosomal protein S11; Provisional

 Score =  221 bits (565), Expect = 1e-74
 Identities = 103/155 (66%), Positives = 120/155 (77%), Gaps = 7/155 (4%)

Query: 45  ETERAFQKQPTIFLARKPTYKKKS---LRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNV 101
           +TERAFQKQ  +F   K   KKK+   +RY K VGLGFKTP+EAI+G YIDKKCPFTGNV
Sbjct: 5   QTERAFQKQEGVFQNSKRLLKKKTSKGVRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNV 64

Query: 102 SIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVV 161
           SIRGRIL G+V   KM+RTI+IRRDYLHY+KKYNR+EKRH+N+ VH SP F DV+ GD+V
Sbjct: 65  SIRGRILRGVVISTKMKRTIIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCF-DVKEGDIV 123

Query: 162 TVGECRPLSKTVRFNVLKVTKGT---GSKKAFKKF 193
            VG+CRPLSKTVRFNVLKV K       +K F  F
Sbjct: 124 VVGQCRPLSKTVRFNVLKVEKNEIIGNVRKQFVLF 158

Length = 158

>gnl|CDD|236296 PRK08572, rps17p, 30S ribosomal protein S17P; Reviewed

 Score =  120 bits (303), Expect = 1e-35
 Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 5/111 (4%)

Query: 73  KTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIK 132
           + +GL  K P E  D    D  CPF G + +RG++L G V   KM +T+V+ R+YLHY+ 
Sbjct: 1   RNIGLDVKPPEEECD----DPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVP 56

Query: 133 KYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKG 183
           KY R+EKR   +  H  P   D ++GD V + ECRPLSKT  F V++  + 
Sbjct: 57  KYERYEKRRSRIHAHNPPCI-DAKVGDKVKIAECRPLSKTKSFVVVEKKER 106

Length = 108

>gnl|CDD|132669 TIGR03630, arch_S17P, archaeal ribosomal protein S17P

 Score =  113 bits (286), Expect = 3e-33
 Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 5/106 (4%)

Query: 75  VGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKY 134
           +G+  K P    +    D KCPF G++ +RG+IL G+V   KM +T+V+ R+YL+Y +KY
Sbjct: 1   IGIPVKPPERECN----DPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYDRKY 56

Query: 135 NRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKV 180
            R+E+R   +  H  P   DV+ GD+V +GE RPLSKT  F VL  
Sbjct: 57  ERYERRRSKIHAHNPPCI-DVKEGDIVIIGETRPLSKTKSFVVLGK 101

This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 102

>gnl|CDD|109426 pfam00366, Ribosomal_S17, Ribosomal protein S17

 Score = 94.7 bits (236), Expect = 5e-26
 Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 110 GIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPL 169
           G+V   KM++TIV+R + L    KY ++EKR +    H  P FR V  GDVV +GECRPL
Sbjct: 1   GVVVSDKMEKTIVVRVERLVPHPKYGKYEKRTKKYPAHDPPCFRKV--GDVVKIGECRPL 58

Query: 170 SKTVRFNVLKV 180
           SKT RF V++V
Sbjct: 59  SKTKRFRVVRV 69

Length = 69

>gnl|CDD|223264 COG0186, RpsQ, Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]

 Score = 90.0 bits (224), Expect = 5e-24
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 98  TGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEI 157
            G + +RGR+L G+V   KM +T+V+  +   Y  KY ++ +R +    H      + ++
Sbjct: 1   HGKLRVRGRVLEGVVVSDKMDKTVVVEVERKVYHPKYGKYVRRSKKYHAH-DECN-EAKV 58

Query: 158 GDVVTVGECRPLSKTVRFNVLKV 180
           GD+V + E RPLSKT RF V+++
Sbjct: 59  GDIVRIAETRPLSKTKRFVVVEI 81

Length = 87

>gnl|CDD|235532 PRK05610, rpsQ, 30S ribosomal protein S17; Reviewed

 Score = 47.8 bits (115), Expect = 7e-08
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 14/81 (17%)

Query: 106 RILIGIVRKMKMQRTIVIR--RDYLHYIKKYNRFEKRHRNMSVHLSPAFRD----VEIGD 159
           + L G V   KM +TIV+   R   H    Y +  KR +    H      D     +IGD
Sbjct: 7   KTLQGRVVSDKMDKTIVVLVERRVKH--PLYGKIVKRSKKYHAH------DENNEAKIGD 58

Query: 160 VVTVGECRPLSKTVRFNVLKV 180
           VV + E RPLSKT R+ ++++
Sbjct: 59  VVRIMETRPLSKTKRWRLVEI 79

Length = 84

>gnl|CDD|213841 TIGR03635, S17_bact, 30S ribosomal protein S17

 Score = 47.1 bits (113), Expect = 7e-08
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 14/78 (17%)

Query: 106 RILIGIVRKMKMQRTIVIR--RDYLHYIKKYNRFEKRHRNMSVHLSPAFRD----VEIGD 159
           + L G+V   KM +TIV+   R   H    Y +  KR +    H      D     ++GD
Sbjct: 2   KTLQGVVVSDKMDKTIVVLVERRVKH--PLYGKIVKRTKKYHAH------DENNECKVGD 53

Query: 160 VVTVGECRPLSKTVRFNV 177
           VV + E RPLSKT R+ +
Sbjct: 54  VVRIIETRPLSKTKRWRL 71

This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 71

>gnl|CDD|177064 CHL00142, rps17, ribosomal protein S17; Validated

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 108 LIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECR 167
            IGIV   KM +TIV+  +  +    Y +   + +   VH      +  IGD V + E R
Sbjct: 6   KIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVH--DEENECNIGDQVLIEETR 63

Query: 168 PLSKTVRFNVLKV 180
           PLSKT R+ + ++
Sbjct: 64  PLSKTKRWILKEI 76

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
PTZ00241	158	40S ribosomal protein S11; Provisional	100.0
KOG1728|consensus	156		100.0
PRK08572	108	rps17p 30S ribosomal protein S17P; Reviewed	100.0
TIGR03630	102	arch_S17P archaeal ribosomal protein S17P. This mo	100.0
COG0186	87	RpsQ Ribosomal protein S17 [Translation, ribosomal	100.0
CHL00142	84	rps17 ribosomal protein S17; Validated	100.0
PRK05610	84	rpsQ 30S ribosomal protein S17; Reviewed	100.0
TIGR03635	71	S17_bact 30S ribosomal protein S17. This model des	99.97
PF00366	69	Ribosomal_S17: Ribosomal protein S17; InterPro: IP	99.97
KOG1740|consensus	107		99.93
KOG1728|consensus	156		99.77
PTZ00241	158	40S ribosomal protein S11; Provisional	99.68
KOG3447|consensus	150		98.93
PRK08572	108	rps17p 30S ribosomal protein S17P; Reviewed	93.54
PF10915	238	DUF2709: Protein of unknown function (DUF2709); In	91.41

>PTZ00241 40S ribosomal protein S11; Provisional

Probab=100.00  E-value=4.4e-67  Score=427.27  Aligned_cols=149  Identities=70%  Similarity=1.141  Sum_probs=141.0

Q ss_pred             hhhhhhhccCcceeeecccccccc---cceeeeeecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCce
Q psy10000         44 RETERAFQKQPTIFLARKPTYKKK---SLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRT  120 (193)
Q Consensus        44 ~eAe~ayqKQ~~if~~~~~~~~~~---~~r~~~~igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KT  120 (193)
                      .|+|+|||+|++||+|+++..+++   .+||++||||||++|++||||+|||++|||||||||||++|+|+|+|++|+||
T Consensus         4 ~q~e~a~qkq~~i~~~~~~~~~~~~~~~~r~~k~iGl~~~~P~~~~~~~yiD~kCPf~G~~~iRgril~G~VvS~KM~KT   83 (158)
T PTZ00241          4 VQTERAFQKQEGVFQNSKRLLKKKTSKGVRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVISTKMKRT   83 (158)
T ss_pred             ccchhhhccCCceeeccccccccccccccchhhhcCCCCcCChhhhcccccCCCCCccceeeEcceEEEEEEEEccCCcc
Confidence            578999999999999999853333   48999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC--cc-ccccccC
Q psy10000        121 IVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT--GS-KKAFKKF  193 (193)
Q Consensus       121 vvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~--~~-~k~f~~~  193 (193)
                      |||+++|++|||+|+||++|+++|+||||+|+ +|++||+|+|+|||||||||+|+|++|++++  ++ +|||++|
T Consensus        84 IVV~ve~~~~h~kY~K~~kr~kk~~aHd~~~~-~~kvGD~V~I~EcRPLSKTKrf~Vv~V~~~~~~~~~~k~f~~f  158 (158)
T PTZ00241         84 IIIRRDYLHYVKKYNRYEKRHKNIPVHCSPCF-DVKEGDIVVVGQCRPLSKTVRFNVLKVEKNEIIGNVRKQFVLF  158 (158)
T ss_pred             EEEEEEEEEecCccceEEEeeecEEEeCCccC-CCCCCCEEEEEEcCCCCCceeEEEEEEEecccccccccccccC
Confidence            99999999999999999999999999999996 7999999999999999999999999999987  44 9999987

>KOG1728|consensus

Probab=100.00  E-value=1.6e-66  Score=416.62  Aligned_cols=150  Identities=78%  Similarity=1.218  Sum_probs=145.6

Q ss_pred             hhhhhhhccCcceeeecccc---cccccceeeeeecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCce
Q psy10000         44 RETERAFQKQPTIFLARKPT---YKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRT  120 (193)
Q Consensus        44 ~eAe~ayqKQ~~if~~~~~~---~~~~~~r~~~~igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KT  120 (193)
                      .+.|+|||+|+++|+|.|+.   .+++.+|+++||||||+||+||++|+|||+||||||+|||||++|+|+|+++||++|
T Consensus         4 vq~eraF~kq~~v~~~~k~~~~~~~k~~~r~~~~iglGFKtP~eAiegtYIDKKCPftG~vsIRGril~G~V~k~Km~rT   83 (156)
T KOG1728|consen    4 VQTERAFQKQPGVFLNAKASGKRTSKKGKRRYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGTVVKMKMQRT   83 (156)
T ss_pred             hhhhHHhhhCccccccCcccccccccccchhhhhcCcccCChHHhhcceeecccCCcccceeEeeEEEeeEEeeeceeEE
Confidence            46799999999999999964   568999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecCccccccccC
Q psy10000        121 IVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF  193 (193)
Q Consensus       121 vvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~~~~k~f~~~  193 (193)
                      |||++|||||++||+||++||+|++||.+|||+++++||+|+|+||||||||+||+|++|+++++..++|.+|
T Consensus        84 IvvrrdYlHy~~KY~ryekrHkN~svh~SPcFrdi~~gDiVtvGecrPLSKtvrfnVLkv~k~~g~~k~~~k~  156 (156)
T KOG1728|consen   84 IVVRRDYLHYIKKYNRYEKRHKNMSVHVSPCFRDIQEGDIVTVGECRPLSKTVRFNVLKVIKAAGSKKQFKKF  156 (156)
T ss_pred             EEEEhhhhhHhHHhhHHHHhccCCccccchhhhccccCCEEEEeecccccceEEEEEEEEeecCCCccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987

>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed

Probab=100.00  E-value=3.7e-50  Score=310.94  Aligned_cols=107  Identities=44%  Similarity=0.879  Sum_probs=104.2

Q ss_pred             eeecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCC
Q psy10000         73 KTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAF  152 (193)
Q Consensus        73 ~~igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~  152 (193)
                      +||||||++|+++|+    |++|||||+|+|||++|+|+|+|++|+|||+|++++++|||+|+||++++++|+||||+|+
T Consensus         1 ~~ig~~~~~p~~~~~----d~~cP~~g~l~irgk~l~G~VvS~Km~KTvvV~v~r~~~hpkY~K~i~r~kky~aHDe~cn   76 (108)
T PRK08572          1 RNIGLDVKPPEEECD----DPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCI   76 (108)
T ss_pred             CccccCCCCCccccc----CCCCCCcceeeeeeEEEEEEEEecCCCceEEEEEEEEEecCCccEEEEEeeeEEEECCCCC
Confidence            589999999999999    9999999999999999999999999999999999999999999999999999999999984


Q ss_pred             CCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000        153 RDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT  184 (193)
Q Consensus       153 ~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~  184 (193)
                       +|++||+|+|+|||||||+|+|+|++|++++
T Consensus        77 -~~kvGD~V~I~E~RPiSKtK~w~v~~i~~~~  107 (108)
T PRK08572         77 -DAKVGDKVKIAECRPLSKTKSFVVVEKKERA  107 (108)
T ss_pred             -CCCCCCEEEEEEcCCCCCceEEEEEEEEEcC
Confidence             8999999999999999999999999999865

>TIGR03630 arch_S17P archaeal ribosomal protein S17P

Probab=100.00  E-value=1.5e-47  Score=293.80  Aligned_cols=102  Identities=45%  Similarity=0.839  Sum_probs=98.2

Q ss_pred             ecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCC
Q psy10000         75 VGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRD  154 (193)
Q Consensus        75 igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~  154 (193)
                      |||++++|+++|+    |++|||||+|+|||++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+||||+| |+
T Consensus         1 ig~~~~~p~~~~~----d~~cpf~g~l~irgk~l~G~VvS~Km~KTivV~V~r~~~hpkY~K~i~r~kky~aHDe~c-n~   75 (102)
T TIGR03630         1 IGIPVKPPERECN----DPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYDRKYERYERRRSKIHAHNPPC-ID   75 (102)
T ss_pred             CCcccCCCCcccc----CCCCCccceeeeeeEEEEEEEEecCCCceEEEEEEEEEecCCccEEEEEeeeEEEECCCC-CC
Confidence            7999999997766    999999999999999999999999999999999999999999999999999999999997 48


Q ss_pred             CCCCCEEEEeeeecCCCceeEEEEEEE
Q psy10000        155 VEIGDVVTVGECRPLSKTVRFNVLKVT  181 (193)
Q Consensus       155 ~kvGD~V~I~ecRPlSKtK~f~V~~v~  181 (193)
                      |++||+|+|+|||||||||+|+|++|+
T Consensus        76 ~kvGD~V~I~E~RPlSKtK~w~vv~i~  102 (102)
T TIGR03630        76 VKEGDIVIIGETRPLSKTKSFVVLGKV  102 (102)
T ss_pred             CCCCCEEEEEEcCCCCCceEEEEEEeC
Confidence            999999999999999999999999984

This model describes exclusively the archaeal ribosomal protein S17P. It excludes homologous ribosomal proteins S11 from eukaryotes and S17 from bacteria.

>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-37  Score=231.42  Aligned_cols=86  Identities=34%  Similarity=0.623  Sum_probs=82.7

Q ss_pred             eeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEE
Q psy10000         98 TGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNV  177 (193)
Q Consensus        98 ~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V  177 (193)
                      ||+++++|++|+|+|+|++|+|||+|++++.++||+|+||++++++|+||| +|+ +|++||+|+|+|||||||||+|+|
T Consensus         1 ~~~~~~~~k~l~G~VvS~Km~KTvvV~ve~~~~hp~Y~K~v~r~kK~~aHd-e~~-~~k~GD~V~I~EtRPLSKtK~~~v   78 (87)
T COG0186           1 HGKLRVRGRVLEGVVVSDKMDKTVVVEVERKVYHPKYGKYVRRSKKYHAHD-ECN-EAKVGDIVRIAETRPLSKTKRFVV   78 (87)
T ss_pred             CCccccCceEEEEEEEEccCceeEEEEEEEEEecccceEEEEEEeeeEeec-ccc-cCCCCCEEEEEEccccCCcceEEE
Confidence            689999999999999999999999999999999999999999999999999 664 899999999999999999999999


Q ss_pred             EEEEecCc
Q psy10000        178 LKVTKGTG  185 (193)
Q Consensus       178 ~~v~~~~~  185 (193)
                      +++++++.
T Consensus        79 v~i~~~a~   86 (87)
T COG0186          79 VEIVEKAV   86 (87)
T ss_pred             EEEeeecc
Confidence            99998864

>CHL00142 rps17 ribosomal protein S17; Validated

Probab=100.00  E-value=4.3e-33  Score=207.42  Aligned_cols=79  Identities=30%  Similarity=0.397  Sum_probs=76.0

Q ss_pred             ceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000        105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT  184 (193)
Q Consensus       105 g~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~  184 (193)
                      .+.|.|+|+|++|+|||+|++++++|||+|+|+++++++|+||||.|  +|++||+|+|+|||||||||+|+|++|++++
T Consensus         3 ~~~~~G~Vvs~km~KTivV~v~r~~~h~kY~K~~~r~kk~~aHDe~n--~~~~GD~V~I~e~RPlSKtK~~~v~~i~~~~   80 (84)
T CHL00142          3 VKEKIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVHDEEN--ECNIGDQVLIEETRPLSKTKRWILKEILSKS   80 (84)
T ss_pred             ceEEEEEEEeCCCCceEEEEEEEEEEcCcccEEEEeeEEEEEeCCCC--CCCCCCEEEEEEcCCCCCcEEEEEEEEEEee
Confidence            47899999999999999999999999999999999999999999987  8999999999999999999999999999877


Q ss_pred             c
Q psy10000        185 G  185 (193)
Q Consensus       185 ~  185 (193)
                      .
T Consensus        81 ~   81 (84)
T CHL00142         81 S   81 (84)
T ss_pred             e
Confidence            4

>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed

Probab=100.00  E-value=4.3e-33  Score=207.33  Aligned_cols=78  Identities=32%  Similarity=0.453  Sum_probs=75.7

Q ss_pred             ceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000        105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT  184 (193)
Q Consensus       105 g~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~  184 (193)
                      +++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||||+|  +|++||+|+|+|||||||+|+|+|++|++++
T Consensus         6 ~~~l~G~Vvs~km~KTvvV~v~r~~~h~kY~K~~~r~kk~~aHD~~n--~~k~GD~V~I~e~rPlSK~K~~~v~~i~~~~   83 (84)
T PRK05610          6 RKTLQGRVVSDKMDKTIVVLVERRVKHPLYGKIVKRSKKYHAHDENN--EAKIGDVVRIMETRPLSKTKRWRLVEIVEKA   83 (84)
T ss_pred             CCEEEEEEEcccCCceEEEEEEEEEEeccccEEEEcceEEEEECCCC--CCCCCCEEEEEEcccCCCCEEEEEEEEEecc
Confidence            68999999999999999999999999999999999999999999987  8999999999999999999999999999865

>TIGR03635 S17_bact 30S ribosomal protein S17

Probab=99.97  E-value=5e-32  Score=195.95  Aligned_cols=70  Identities=34%  Similarity=0.493  Sum_probs=68.2

Q ss_pred             eEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEE
Q psy10000        106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNV  177 (193)
Q Consensus       106 ~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V  177 (193)
                      ++|.|+|+|++|+|||+|++++++|||+|+|+++++++|+||||+|  +|++||+|+|+|||||||+|+|+|
T Consensus         2 ~~l~G~Vvs~km~KTvvV~v~~~~~h~ky~k~~~r~kk~~aHD~~~--~~k~GD~V~I~ecrPlSK~K~~~~   71 (71)
T TIGR03635         2 KTLQGVVVSDKMDKTIVVLVERRVKHPLYGKIVKRTKKYHAHDENN--ECKVGDVVRIIETRPLSKTKRWRL   71 (71)
T ss_pred             eEEEEEEEcccCCceEEEEEEEEEEeccccEEEEccEEEEEECCCC--CCCCCCEEEEEEcCCcCCceEeEC
Confidence            6899999999999999999999999999999999999999999987  899999999999999999999985

This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.

>PF00366 Ribosomal_S17: Ribosomal protein S17; InterPro: IPR000266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=2.3e-30  Score=186.03  Aligned_cols=69  Identities=41%  Similarity=0.679  Sum_probs=66.6

Q ss_pred             EEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEE
Q psy10000        110 GIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKV  180 (193)
Q Consensus       110 G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v  180 (193)
                      |+|+|++|+|||+|++++++|||+|+|+++++++|+||||+|  .|++||+|+|.|||||||+|+|+|++|
T Consensus         1 G~Vvs~km~KTv~V~v~~~~~~~ky~K~~~~~kk~~aHD~~~--~~~vGD~V~I~e~rPiSk~K~~~v~~v   69 (69)
T PF00366_consen    1 GVVVSDKMDKTVVVRVERLVYHPKYKKYIKRTKKYMAHDENN--ICKVGDKVRIRECRPISKTKRFVVVEV   69 (69)
T ss_dssp             EEEEEEESTTEEEEEEEEEEEETTTEEEEEEEEEEEEE-TTS--SSTTTSEEEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEcCCCCeEEEEEEEEEEcceEeeccCccccEEEeCCcc--CCCCCCEEEEEeeeccCCcEeEEEEEC
Confidence            899999999999999999999999999999999999999998  699999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal proteins catalyse ribosome assembly and stabilise the rRNA, tuning the structure of the ribosome for optimal function. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S17 is known to bind specifically to the 5' end of 16S ribosomal RNA in Escherichia coli (primary rRNA binding protein), and is thought to be involved in the recognition of termination codons. Experimental evidence [] has revealed that S17 has virtually no groups exposed on the ribosomal surface.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_Q 2VHP_Q 3BBN_Q 2QAL_Q 3OAR_Q 1VS5_Q 3KC4_Q 2AW7_Q 3E1C_J 2AVY_Q ....

>KOG1740|consensus

Probab=99.93  E-value=1.1e-27  Score=183.22  Aligned_cols=78  Identities=35%  Similarity=0.534  Sum_probs=74.7

Q ss_pred             eEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecCc
Q psy10000        106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTG  185 (193)
Q Consensus       106 ~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~~  185 (193)
                      ..+.|+|+|++|+|||+|+++++.+||+|+||++++++|+|||+.+  .|++||.|+|..||||||||+|.+.+|+++++
T Consensus         3 ~~~vg~VvS~kmqKTv~V~V~rl~~n~~ynryv~~~~kymahD~~n--~cnvGD~VrlepsRPlSk~K~f~i~eII~~a~   80 (107)
T KOG1740|consen    3 KNVVGTVVSNKMQKTVKVRVDRLFFNPKYNRYVKRTSKYMAHDDKN--QCNVGDRVRLEPSRPLSKTKHFIIAEIIKKAR   80 (107)
T ss_pred             ccceeeeeecccCceeEEEeeeccccHHHHHHHHHhhheeecCccc--cccccceEEeccCCcccccceeehHHHHHHHh
Confidence            4688999999999999999999999999999999999999999986  79999999999999999999999999998764

>KOG1728|consensus

Probab=99.77  E-value=7.8e-20  Score=147.40  Aligned_cols=62  Identities=44%  Similarity=0.702  Sum_probs=56.3

Q ss_pred             CccchhhhhccCcceeeceecccc-cCCCccceeeccCcccccchhh-hhhhccCcceeeeccc
Q psy10000          1 MAEQNERSFQKQPTVFLNRKKGLS-KKRKELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKP   62 (193)
Q Consensus         1 m~~q~e~afqKQ~~if~~~k~~~~-~~~k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~   62 (193)
                      |++|+|+|||+|++||+|.+.... .+++.+|||+|||||||||+|| |+.|+|++|+|++.-.
T Consensus         2 ~~vq~eraF~kq~~v~~~~k~~~~~~~k~~~r~~~~iglGFKtP~eAiegtYIDKKCPftG~vs   65 (156)
T KOG1728|consen    2 MAVQTERAFQKQPGVFLNAKASGKRTSKKGKRRYKNIGLGFKTPREAIEGTYIDKKCPFTGNVS   65 (156)
T ss_pred             cchhhhHHhhhCccccccCcccccccccccchhhhhcCcccCChHHhhcceeecccCCccccee
Confidence            678999999999999999997733 3577899999999999999999 9999999999999774

>PTZ00241 40S ribosomal protein S11; Provisional

Probab=99.68  E-value=9.2e-18  Score=137.67  Aligned_cols=63  Identities=43%  Similarity=0.670  Sum_probs=54.4

Q ss_pred             CccchhhhhccCcceeeceecccccC-CCccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000          1 MAEQNERSFQKQPTVFLNRKKGLSKK-RKELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT   63 (193)
Q Consensus         1 m~~q~e~afqKQ~~if~~~k~~~~~~-~k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~   63 (193)
                      |++|+|+|||||++||+|++..++++ .+..||+|||||||++|++| ++.|+|.+|||++.-..
T Consensus         2 ~~~q~e~a~qkq~~i~~~~~~~~~~~~~~~~r~~k~iGl~~~~P~~~~~~~yiD~kCPf~G~~~i   66 (158)
T PTZ00241          2 ADVQTERAFQKQEGVFQNSKRLLKKKTSKGVRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSI   66 (158)
T ss_pred             ccccchhhhccCCceeeccccccccccccccchhhhcCCCCcCChhhhcccccCCCCCccceeeE
Confidence            45599999999999999999865432 23589999999999999999 99999999999998753

>KOG3447|consensus

Probab=98.93  E-value=2.8e-10  Score=91.77  Aligned_cols=83  Identities=22%  Similarity=0.256  Sum_probs=75.3

Q ss_pred             eeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeee-ecCCCceeEEEE
Q psy10000        100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGEC-RPLSKTVRFNVL  178 (193)
Q Consensus       100 ~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ec-RPlSKtK~f~V~  178 (193)
                      .-|+++++|-|.|+..+|++|..|++.++..++-.++|..++..|.|||+-.  .|++||+|.|.+- -|+.+.+++.|.
T Consensus         5 ~~s~~~~~lmGk~ig~~~q~~akVR~~r~eld~yL~kYf~k~~~yfAhD~~~--~c~vGDtVLir~lp~r~t~~V~H~v~   82 (150)
T KOG3447|consen    5 KSSVHAQWLMGKVIGTKMQKTAKVRVTRLELDPYLLKYFNKRKTYFAHDALQ--QCTVGDTVLIRALPVRRTKHVKHEVA   82 (150)
T ss_pred             EeecccEEEEeeeeeccccccceeeeehhhcCHHHHHHhccccceeecchhh--ccccCCEEEEecCCcchhhhhhhhhH
Confidence            3589999999999999999999999999999999999999999999999986  7999999999995 567788888888


Q ss_pred             EEEecC
Q psy10000        179 KVTKGT  184 (193)
Q Consensus       179 ~v~~~~  184 (193)
                      +|+-+-
T Consensus        83 ~VVfk~   88 (150)
T KOG3447|consen   83 EVVFKV   88 (150)
T ss_pred             hheeec
Confidence            886553

>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed

Probab=93.54  E-value=0.027  Score=44.18  Aligned_cols=27  Identities=30%  Similarity=0.492  Sum_probs=22.3

Q ss_pred             eccCcccccchhhhhhhccCcceeeecccc
Q psy10000         34 RDVGLGFKSPRETERAFQKQPTIFLARKPT   63 (193)
Q Consensus        34 K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~   63 (193)
                      +||||||++|++|-.   |..|||.+.-+.
T Consensus         1 ~~ig~~~~~p~~~~~---d~~cP~~g~l~i   27 (108)
T PRK08572          1 RNIGLDVKPPEEECD---DPNCPFHGTLPV   27 (108)
T ss_pred             CccccCCCCCccccc---CCCCCCcceeee
Confidence            589999999988722   788999998764

>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales

Probab=91.41  E-value=0.13  Score=44.57  Aligned_cols=64  Identities=33%  Similarity=0.568  Sum_probs=35.4

Q ss_pred             hhhhhccCcceeeceecccccCCCccceeeccCcccccchhhhhhhccCcceeeecccccccccceeeeeecccccCCc-
Q psy10000          5 NERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPR-   83 (193)
Q Consensus         5 ~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~~~P~-   83 (193)
                      .|.+|+=||.+|...|-                 =|+++++|.+..-.-            +|..|-. .|-+++-.|. 
T Consensus        31 lE~k~~l~PVlF~rdK~-----------------I~qs~e~ai~~lE~e------------~KlWret-eI~I~~g~p~V   80 (238)
T PF10915_consen   31 LEQKFNLQPVLFVRDKI-----------------IFQSAEDAIRILEEE------------GKLWRET-EIKIQSGKPSV   80 (238)
T ss_pred             HHHhcCCCceeeecchh-----------------hccCHHHHHHHHHHh------------cchheee-eEEEecCCccc
Confidence            36677777777765442                 166666664433221            2333322 4666666664 


Q ss_pred             -ccccccccCcCCCceeee
Q psy10000         84 -EAIDGTYIDKKCPFTGNV  101 (193)
Q Consensus        84 -~~~~~~y~d~~cPf~g~~  101 (193)
                       |...--||   |||||.|
T Consensus        81 NE~TkkIYI---CPFTGKV   96 (238)
T PF10915_consen   81 NEQTKKIYI---CPFTGKV   96 (238)
T ss_pred             ccccceEEE---cCCcCcc
Confidence             22223388   9999876

Their function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2zkq_q	158	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-66
3izb_P	156	Localization Of The Small Subunit Ribosomal Protein		1e-52
2xzm_Q	157	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-47
3iz6_P	161	Localization Of The Small Subunit Ribosomal Protein		1e-45
3zey_E	174	High-resolution Cryo-electron Microscopy Structure		3e-44
3jyv_Q	80	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-28
1s1h_Q	76	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-26
3j20_R	113	Promiscuous Behavior Of Proteins In Archaeal Riboso		9e-16
3fih_Q	80	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		3e-04
2gy9_Q	79	Structure Of The 30s Subunit Of A Pre-Translocation		3e-04
1p6g_Q	83	Real Space Refined Coordinates Of The 30s Subunit F		3e-04
1vs5_Q	84	Crystal Structure Of The Bacterial Ribosome From Es		3e-04
1i94_Q	104	Crystal Structures Of The Small Ribosomal Subunit W		3e-04

>pdb|2ZKQ|QQ Chain q, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 158

Iteration: 1
 Score =  248 bits (634), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 136/154 (88%), Gaps = 5/154 (3%)
Query: 45  ETERAFQKQPTIFLARK-----PTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTG
Sbjct: 5   QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD
Sbjct: 65  NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           +VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

>pdb|3IZB|P Chain P, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 156

Iteration: 1
 Score =  201 bits (512), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 120/150 (80%), Gaps = 2/150 (1%)
Query: 45  ETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIR 104
           ++ERAFQKQP IF   K    K++ R++K  GLGFKTP+ AI+G+YIDKKCPFTG VSIR
Sbjct: 8   QSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIR 67
Query: 105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVG 164
           G+IL G V   KM RTIVIRR YLHYI KYNR+EKRH+N+ VH+SPAFR V++GD+VTVG
Sbjct: 68  GKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFR-VQVGDIVTVG 126
Query: 165 ECRPLSKTVRFNVLKVTKGTG-SKKAFKKF 193
           +CRP+SKTVRFNV+KV+   G + K F KF
Sbjct: 127 QCRPISKTVRFNVVKVSAAAGKANKQFAKF 156

>pdb|2XZM|Q Chain Q, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 157

Iteration: 1
 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 112/140 (80%), Gaps = 4/140 (2%)
Query: 45  ETERAFQKQPTIFLARKPTYKKKS---LRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNV 101
           + +RA+QKQ  +FL  K    KK+   +RY+K +GLGFKTP+EAI+GTY+DKKCPFT N+
Sbjct: 4   QIQRAYQKQDGVFLNSKKLLAKKTSAGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFTSNL 63
Query: 102 SIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVV 161
           SIRG+I+ G+V   KM RT++IRRDYLHY++KYNR+EKRHRN+ VH+SP F  V+ GD++
Sbjct: 64  SIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCF-SVKEGDIL 122
Query: 162 TVGECRPLSKTVRFNVLKVT 181
             G+CRP+SKTVRFN L+V 
Sbjct: 123 VAGQCRPISKTVRFNALQVV 142

>pdb|3IZ6|P Chain P, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 161

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 110/141 (78%), Gaps = 6/141 (4%)
Query: 45  ETERAFQKQPTIFLARKPTYKKKSL-----RYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           +TE+AF KQP +FL+ K + K K       R+ K++GLGFKTPREAI+GTYIDKKCPFTG
Sbjct: 4   QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
            VSIRGRI+ G     KM RTI++RR+YLH++KKY R+EKRH N+  H+SP FR V+ GD
Sbjct: 64  TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGD 122
Query: 160 VVTVGECRPLSKTVRFNVLKV 180
            V +G+CRPLSKTVRFNVLKV
Sbjct: 123 HVIIGQCRPLSKTVRFNVLKV 143

>pdb|3ZEY|E Chain E, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 174

Iteration: 1
 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 113/154 (73%), Gaps = 6/154 (3%)
Query: 45  ETERAFQKQPTI-----FLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTG 99
           + E+A+Q+Q  +       ++K   +   +RY K +GLGF TP+ AI+G YID+KCPFT 
Sbjct: 19  QHEKAYQRQTAVNENIRTASKKHVNRSGHIRYSKKIGLGFATPKAAINGKYIDRKCPFTS 78
Query: 100 NVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159
           NVSIRGRIL G+V   KM+R+IVIRR+YLH+I+KY R++KRHRN++VH SP F D + GD
Sbjct: 79  NVSIRGRILRGVVHSTKMRRSIVIRRNYLHFIRKYQRYQKRHRNITVHCSPCF-DPKPGD 137
Query: 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
            V VG+CRPLSKT+R+NVL+V   + + K  KKF
Sbjct: 138 EVVVGQCRPLSKTIRYNVLQVVSKSAADKMGKKF 171

>pdb|3JYV|Q Chain Q, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 80

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Query: 104 RGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           RG+IL G V   KM RTIVIRR YLHYI KYNR+EKRH+N+ VH+SPAFR V++GD+VTV
Sbjct: 1   RGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFR-VQVGDIVTV 59
Query: 164 GECRPLSKTVRFNVLKVTKGT 184
           G+CRP+SKTVRFNV+KV+   
Sbjct: 60  GQCRPISKTVRFNVVKVSAAA 80

>pdb|1S1H|Q Chain Q, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 76

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 66/76 (86%), Gaps = 1/76 (1%)
Query: 106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGE 165
           +IL G V   KM RTIVIRR YLHYI KYNR+EKRH+N+ VH+SPAFR V++GD+VTVG+
Sbjct: 1   KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFR-VQVGDIVTVGQ 59
Query: 166 CRPLSKTVRFNVLKVT 181
           CRP+SKTVRFNV+KV+
Sbjct: 60  CRPISKTVRFNVVKVS 75

>pdb|3J20|R Chain R, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 113

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 73  KTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIK 132
           + +GL  + P E  D    D KCP+ GN+ I GR+  GIV   K ++T+ + R Y  Y+ 
Sbjct: 3   RDIGLRVQPPAEKCD----DPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLN 58
Query: 133 KYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKV 180
           KY R+E R   +  H  P   + ++GD V + E RPLSKT  F V+ V
Sbjct: 59  KYERYELRRSKIHAHNPPCI-NAKVGDKVLIAETRPLSKTKHFVVVAV 105

>pdb|3FIH|Q Chain Q, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 80

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 106 RILIGIVRKMKMQRTIV--IRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           R L G V   KM+++IV  I R   H I  Y +F KR   + VH      +  IGDVV +
Sbjct: 3   RTLQGRVVSDKMEKSIVVAIERFVKHPI--YGKFIKRTTKLHVH--DENNECGIGDVVEI 58
Query: 164 GECRPLSKTVRFNVLKVTK 182
            ECRPLSKT  + +++V +
Sbjct: 59  RECRPLSKTKSWTLVRVVE 77

>pdb|2GY9|Q Chain Q, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 79

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 106 RILIGIVRKMKMQRTIV--IRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           R L G V   KM+++IV  I R   H I  Y +F KR   + VH      +  IGDVV +
Sbjct: 1   RTLQGRVVSDKMEKSIVVAIERFVKHPI--YGKFIKRTTKLHVH--DENNECGIGDVVEI 56
Query: 164 GECRPLSKTVRFNVLKVTK 182
            ECRPLSKT  + +++V +
Sbjct: 57  RECRPLSKTKSWTLVRVVE 75

>pdb|1P6G|Q Chain Q, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 83

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 106 RILIGIVRKMKMQRTIV--IRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           R L G V   KM+++IV  I R   H I  Y +F KR   + VH      +  IGDVV +
Sbjct: 5   RTLQGRVVSDKMEKSIVVAIERFVKHPI--YGKFIKRTTKLHVH--DENNECGIGDVVEI 60
Query: 164 GECRPLSKTVRFNVLKVTK 182
            ECRPLSKT  + +++V +
Sbjct: 61  RECRPLSKTKSWTLVRVVE 79

>pdb|1VS5|Q Chain Q, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 84

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 106 RILIGIVRKMKMQRTIV--IRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           R L G V   KM+++IV  I R   H I  Y +F KR   + VH      +  IGDVV +
Sbjct: 6   RTLQGRVVSDKMEKSIVVAIERFVKHPI--YGKFIKRTTKLHVH--DENNECGIGDVVEI 61
Query: 164 GECRPLSKTVRFNVLKVTK 182
            ECRPLSKT  + +++V +
Sbjct: 62  RECRPLSKTKSWTLVRVVE 80

>pdb|1I94|Q Chain Q, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 104

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 106 RILIGIVRKMKMQRTI--VIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           ++L G+V   KMQ+T+  ++ R + H +  Y +  KR +    H  P  R  ++GDVV +
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPL--YGKVIKRSKKYLAH-DPEER-YKVGDVVEI 58
Query: 164 GECRPLSKTVRFNVLKVTK 182
            E RP+SK  RF VL++ +
Sbjct: 59  IEARPISKRKRFRVLRLVE 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2zkq_q	158	40S ribosomal protein S11E; protein-RNA complex, 4	1e-68
3u5c_L	156	RP41, S18, YS12, 40S ribosomal protein S11-A; tran	2e-62
3iz6_P	161	40S ribosomal protein S11 (S17P); eukaryotic ribos	4e-61
2xzm_Q	157	Ribosomal protein S17 containing protein; ribosome	7e-61
3r8n_Q	80	30S ribosomal protein S17; protein biosynthesis, R	5e-08
1qd7_I	89	S17 ribosomal protein; 30S ribosomal subunit, low	7e-08
3bbn_Q	142	Ribosomal protein S17; small ribosomal subunit, sp	1e-07
2vqe_Q	105	30S ribosomal protein S17; tRNA-binding, rRNA-bind	4e-07

>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q Length = 158

 Score =  205 bits (523), Expect = 1e-68
 Identities = 121/153 (79%), Positives = 135/153 (88%), Gaps = 5/153 (3%)

Query: 46  TERAFQKQPTIFLARKP-----TYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGN 100
           TERA+QKQPTIF  +K      T K+K  RY+K +GLGFKTP+EAI+GTYIDKKCPFTGN
Sbjct: 6   TERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGN 65

Query: 101 VSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDV 160
           VSIRGRIL G+V KMKMQRTIVIRRDYLHYI+KYNRFEKRH+NMSVHLSP FRDV+IGD+
Sbjct: 66  VSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDI 125

Query: 161 VTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193
           VTVGECRPLSKTVRFNVLKVTK  G+KK F+KF
Sbjct: 126 VTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158

>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q Length = 156

 Score =  190 bits (483), Expect = 2e-62
 Identities = 97/149 (65%), Positives = 118/149 (79%), Gaps = 2/149 (1%)

Query: 46  TERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRG 105
           +ERAFQKQP IF   K    K++ R++K  GLGFKTP+ AI+G+YIDKKCPFTG VSIRG
Sbjct: 9   SERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRG 68

Query: 106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGE 165
           +IL G V   KM RTIVIRR YLHYI KYNR+EKRH+N+ VH+SPAF  V++GD+VTVG+
Sbjct: 69  KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAF-RVQVGDIVTVGQ 127

Query: 166 CRPLSKTVRFNVLKVTKGTG-SKKAFKKF 193
           CRP+SKTVRFNV+KV+   G + K F KF
Sbjct: 128 CRPISKTVRFNVVKVSAAAGKANKQFAKF 156

>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 161

 Score =  186 bits (474), Expect = 4e-61
 Identities = 93/193 (48%), Positives = 115/193 (59%), Gaps = 37/193 (19%)

Query: 1   MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLAR 60
           MAEQ E++F KQP VFL+ KK    K+                                 
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKP-------------------------------- 28

Query: 61  KPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRT 120
                K   R+ K++GLGFKTPREAI+GTYIDKKCPFTG VSIRGRI+ G     KM RT
Sbjct: 29  ----GKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRT 84

Query: 121 IVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKV 180
           I++RR+YLH++KKY R+EKRH N+  H+SP F  V+ GD V +G+CRPLSKTVRFNVLKV
Sbjct: 85  IIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCF-RVKEGDHVIIGQCRPLSKTVRFNVLKV 143

Query: 181 TKGTGSKKAFKKF 193
                +  +  K 
Sbjct: 144 IPAGSTGGSGGKK 156

>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q Length = 157

 Score =  185 bits (472), Expect = 7e-61
 Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 7/154 (4%)

Query: 46  TERAFQKQPTIFLARKPTYKKKS---LRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVS 102
            +RA+QKQ  +FL  K    KK+   +RY+K +GLGFKTP+EAI+GTY+DKKCPFT N+S
Sbjct: 5   IQRAYQKQDGVFLNSKKLLAKKTSAGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFTSNLS 64

Query: 103 IRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVT 162
           IRG+I+ G+V   KM RT++IRRDYLHY++KYNR+EKRHRN+ VH+SP F  V+ GD++ 
Sbjct: 65  IRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCF-SVKEGDILV 123

Query: 163 VGECRPLSKTVRFNVLKVTKGT---GSKKAFKKF 193
            G+CRP+SKTVRFN L+V         +K F  F
Sbjct: 124 AGQCRPISKTVRFNALQVVPNEIIGSVRKQFLLF 157

>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A Length = 89

 Score = 47.2 bits (113), Expect = 7e-08
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 104 RGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           + ++ +G V   KM +TI +  +       Y +  K  +    H      + ++GD+V +
Sbjct: 1   QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAH--DEHNEAKVGDIVKI 58

Query: 164 GECRPLSKTVRFNVLKV 180
            E RPLS T RF ++++
Sbjct: 59  METRPLSATKRFRLVEI 75

>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 142

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 106 RILIGIVRKMKMQRTIVIR--RDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           + + G V      +T+ +   R   H   KY R  +  +    H        ++GDVV +
Sbjct: 61  KTMQGRVVCATSDKTVAVEVVRLAPH--PKYKRRVRMKKKYQAH--DPDNQFKVGDVVRL 116

Query: 164 GECRPLSKTVRFNVLKV 180
            + RP+SKT  F  L V
Sbjct: 117 EKSRPISKTKSFVALPV 133

>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ... Length = 105

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 106 RILIGIVRKMKMQRTIV--IRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           ++L G+V   KMQ+T+   + R + H    Y +  KR +    H        ++GDVV +
Sbjct: 4   KVLTGVVVSDKMQKTVTVLVERQFPH--PLYGKVIKRSKKYLAH--DPEEKYKLGDVVEI 59

Query: 164 GECRPLSKTVRFNVLKV 180
            E RP+SK  RF VL++
Sbjct: 60  IESRPISKRKRFRVLRL 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
2zkq_q	158	40S ribosomal protein S11E; protein-RNA complex, 4	100.0
3u5c_L	156	RP41, S18, YS12, 40S ribosomal protein S11-A; tran	100.0
2xzm_Q	157	Ribosomal protein S17 containing protein; ribosome	100.0
3iz6_P	161	40S ribosomal protein S11 (S17P); eukaryotic ribos	100.0
3j20_R	113	30S ribosomal protein S17P; archaea, archaeal, KIN	100.0
3bbn_Q	142	Ribosomal protein S17; small ribosomal subunit, sp	100.0
1qd7_I	89	S17 ribosomal protein; 30S ribosomal subunit, low	100.0
3r8n_Q	80	30S ribosomal protein S17; protein biosynthesis, R	100.0
2vqe_Q	105	30S ribosomal protein S17; tRNA-binding, rRNA-bind	100.0
3u5c_L	156	RP41, S18, YS12, 40S ribosomal protein S11-A; tran	99.69
3iz6_P	161	40S ribosomal protein S11 (S17P); eukaryotic ribos	98.62
2zkq_q	158	40S ribosomal protein S11E; protein-RNA complex, 4	98.54
2xzm_Q	157	Ribosomal protein S17 containing protein; ribosome	98.35
3j20_R	113	30S ribosomal protein S17P; archaea, archaeal, KIN	96.58

>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q

Probab=100.00  E-value=5.6e-70  Score=443.73  Aligned_cols=157  Identities=78%  Similarity=1.232  Sum_probs=74.3

Q ss_pred             Ccc-chhhhhccCcceeeceecccccCCCccceeeccCcccccchhhhhhhccCcceeeecccccccccceeeeeecccc
Q psy10000          1 MAE-QNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGF   79 (193)
Q Consensus         1 m~~-q~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~   79 (193)
                      ||+ |+|+|||||++||+|+++.+.++.                                    ++++.+||++||||||
T Consensus         1 m~~~q~e~afqkq~~i~~~~~~~~~~~~------------------------------------~~~~~~r~~k~iGl~~   44 (158)
T 2zkq_q            1 MADIQTERAYQKQPTIFQNKKRVLLGET------------------------------------GKEKLPRYYKNIGLGF   44 (158)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcchhhhhhhccCcceeecceehhcccc------------------------------------ccccCceEEEecccCc
Confidence            787 999999999999998886542211                                    1457789999999999


Q ss_pred             cCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCC
Q psy10000         80 KTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD  159 (193)
Q Consensus        80 ~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD  159 (193)
                      ++|+|||+|+|||++|||||+|||||++|+|+|+|++|+|||+|+++|++|||+|+|+++|+++|+||||+|+|+|++||
T Consensus        45 k~P~~~~~~~~~D~kCPf~G~lsvRGr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD  124 (158)
T 2zkq_q           45 KTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD  124 (158)
T ss_dssp             --------------------------CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCC
T ss_pred             cCChHHhcccccCCCCCCccccceeeEEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999855799999


Q ss_pred             EEEEeeeecCCCceeEEEEEEEecCccccccccC
Q psy10000        160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF  193 (193)
Q Consensus       160 ~V~I~ecRPlSKtK~f~V~~v~~~~~~~k~f~~~  193 (193)
                      +|+|+|||||||||+|+|++|++++++++||++|
T Consensus       125 ~V~I~E~RPLSKtKrw~Vv~I~~~~~~~k~f~~f  158 (158)
T 2zkq_q          125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF  158 (158)
T ss_dssp             EEEEECCSCSSSCC-CEEEEEEEC----------
T ss_pred             EEEEEEccccCCcEEEEEEEEecCCCcchhhhcC
Confidence            9999999999999999999999988889999987

>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q

Probab=100.00  E-value=1.1e-68  Score=435.29  Aligned_cols=150  Identities=65%  Similarity=1.086  Sum_probs=145.1

Q ss_pred             chhhhhhhccCcceeeecccccccccceeeeeecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEE
Q psy10000         43 PRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIV  122 (193)
Q Consensus        43 P~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvv  122 (193)
                      ..|+|+|||||++||+|+++..+++.+||++||||||++|++||||+|||++|||||||||||++|+|+|+|++|+|||+
T Consensus         6 ~~q~e~a~qkq~~i~~~~~~~~~~~~~r~~~~iGl~~k~P~~a~~g~y~D~kCPf~G~lsvRgr~l~G~VVS~KMdKTIv   85 (156)
T 3u5c_L            6 TVQSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIV   85 (156)
T ss_dssp             CSSCSSSCCCCTTCCCCSSSCCSSSSCCCCCCCSTTCCCCHHHHHCCCCCTTCTTTSSCCEEEEEEEEEEEECCSTTEEE
T ss_pred             hhhhhhhhccCcceeecccccccccCceeeeecCcCccCChhhccceeccccCCcccceeEeeEEEEEEEEeecCCCeEE
Confidence            34779999999999999998888899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecCc-cccccccC
Q psy10000        123 IRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTG-SKKAFKKF  193 (193)
Q Consensus       123 V~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~~-~~k~f~~~  193 (193)
                      |+++|++|||+|+||++|+++|+||||+|+ +|++||+|+|+|||||||||+|+|++|+++++ +++||++|
T Consensus        86 V~ve~~~~hpkY~K~vkr~kKy~AHDe~~n-~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~~~~k~f~~f  156 (156)
T 3u5c_L           86 IRRAYLHYIPKYNRYEKRHKNVPVHVSPAF-RVQVGDIVTVGQCRPISKTVRFNVVKVSAAAGKANKQFAKF  156 (156)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEEECCTTS-CCCTTCEEEEEEEEEEETTEEEEEEEECCCCSSSGGGCCCC
T ss_pred             EEEEEEeecCccceEEECceEEEEECCCcC-cCCCCCEEEEEecccCCCcEeEEEEEEEecCCCcccccccC
Confidence            999999999999999999999999999884 89999999999999999999999999999984 89999998

>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q

Probab=100.00  E-value=1.8e-68  Score=434.49  Aligned_cols=154  Identities=60%  Similarity=1.051  Sum_probs=139.9

Q ss_pred             CccchhhhhccCcceeeceecccccCCCccceeeccCcccccchhhhhhhccCcceeeecccccccccceeeeeeccccc
Q psy10000          1 MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFK   80 (193)
Q Consensus         1 m~~q~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~~   80 (193)
                      ||+|+|+|||||++||+|+++.+.+                                      .++++.||++||||||+
T Consensus         1 m~~q~e~a~qkq~~i~~~~~~~~~~--------------------------------------~~~~~~r~~k~iGl~~k   42 (157)
T 2xzm_Q            1 MDTQIQRAYQKQDGVFLNSKKLLAK--------------------------------------KTSAGVRYYKNIGLGFK   42 (157)
T ss_dssp             CTTTTSSSSCCCCSSCCGGGGGGSS--------------------------------------CCSSSCCCCCCCCSSCC
T ss_pred             CcchhhHhhccCcceeecceehhcc--------------------------------------ccccCceeEEecccCCc
Confidence            8889999999999889888755321                                      13466788888888888


Q ss_pred             CCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCE
Q psy10000         81 TPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDV  160 (193)
Q Consensus        81 ~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~  160 (193)
                      +|+|||+|+|||++|||||+|||||++|+|+|+|++|+|||+|++++++|||+|+|+++|+++|+||||+|+ +|++||+
T Consensus        43 ~P~~~~~~~~~D~kCPf~G~lsvRgr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n-~~kvGD~  121 (157)
T 2xzm_Q           43 TPKEAIEGTYVDKKCPFTSNLSIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCF-SVKEGDI  121 (157)
T ss_dssp             CCHHHHTCCCCCTTCSSSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTS-CCCTTCE
T ss_pred             CChHHhcccccCCCCCCccceeeeeEEEEEEEEEecCCccEEEEEEEEEecCccceEeecceeEEEECCCCC-CCCCCCE
Confidence            899999999999999999999999999999999999999999999999999999999999999999998884 8999999


Q ss_pred             EEEeeeecCCCceeEEEEEEEecC--c-cccccccC
Q psy10000        161 VTVGECRPLSKTVRFNVLKVTKGT--G-SKKAFKKF  193 (193)
Q Consensus       161 V~I~ecRPlSKtK~f~V~~v~~~~--~-~~k~f~~~  193 (193)
                      |+|+|||||||||+|+|++|++++  | +++||++|
T Consensus       122 V~I~EcRPLSKtKrw~Vv~I~~ka~~g~~~k~f~~f  157 (157)
T 2xzm_Q          122 LVAGQCRPISKTVRFNALQVVPNEIIGSVRKQFLLF  157 (157)
T ss_dssp             EEEEECCCCSSSCCEEEEEECCCCCCSCTTTCCCCC
T ss_pred             EEEEEcCCCCCcEEEEEEEEEeccccCccchhhhcC
Confidence            999999999999999999999875  3 68999987

>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-68  Score=435.59  Aligned_cols=155  Identities=61%  Similarity=1.020  Sum_probs=83.2

Q ss_pred             CccchhhhhccCcceeeceecccccCCCccceeeccCcccccchhhhhhhccCcceeeecccccccccceeeeeeccccc
Q psy10000          1 MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFK   80 (193)
Q Consensus         1 m~~q~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~~   80 (193)
                      ||+|+|+|||||++||+|+++.+.+                                    ...+++.+||++||||||+
T Consensus         1 ~~~q~e~a~qkq~~i~~~~k~~~~~------------------------------------~~~~~~~~r~~k~iGl~~k   44 (161)
T 3iz6_P            1 MAEQTEKAFLKQPKVFLSSKKSGKG------------------------------------KKPGKGGNRFWKSIGLGFK   44 (161)
T ss_dssp             ---------------------------------------------------------------------------CCCCC
T ss_pred             CcchhhhhhccCccceecceecccc------------------------------------ccccccCceEEEecCcCCC
Confidence            8999999999999999998864321                                    0124567788899999999


Q ss_pred             CCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCE
Q psy10000         81 TPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDV  160 (193)
Q Consensus        81 ~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~  160 (193)
                      +|++||||+|||++|||||||||||++|+|+|+|++|+|||+|+++|++|||+|+||++|+++|+||||+|+ +|++||+
T Consensus        45 ~P~~a~~g~y~D~kCPf~G~lsiRgril~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n-~~kvGD~  123 (161)
T 3iz6_P           45 TPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCF-RVKEGDH  123 (161)
T ss_dssp             CEEEECCCCSSSSCCSEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCEEE-EECCCCC
T ss_pred             CChHHhcCcccccCCCccceeEEeeEEEEEEEEeccCCCeEEEEEEEEEecCccceEEECceeEEEECCCCC-cCCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999874 8999999


Q ss_pred             EEEeeeecCCCceeEEEEEEEecCcc-----cccccc
Q psy10000        161 VTVGECRPLSKTVRFNVLKVTKGTGS-----KKAFKK  192 (193)
Q Consensus       161 V~I~ecRPlSKtK~f~V~~v~~~~~~-----~k~f~~  192 (193)
                      |+|+|||||||||+|+|++|++++..     ++||..
T Consensus       124 V~I~EcRPLSKtKrw~Vv~Iv~~~~~~~~~~~k~f~~  160 (161)
T 3iz6_P          124 VIIGQCRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA  160 (161)
T ss_dssp             C------------------------------------
T ss_pred             EEEEeccCCCCcEeEEEEEEEecCcccccccchhccc
Confidence            99999999999999999999998533     688864

>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.5e-53  Score=329.87  Aligned_cols=110  Identities=37%  Similarity=0.709  Sum_probs=105.2

Q ss_pred             eeeecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCC
Q psy10000         72 HKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPA  151 (193)
Q Consensus        72 ~~~igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~  151 (193)
                      |+||||||++|+++    |+|++|||||||||||++|+|+|+|++|+|||+|+++|++|||+|+||++++++|+||||||
T Consensus         2 m~~igl~~~~p~~~----~~d~~cPf~G~~~vrgr~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~   77 (113)
T 3j20_R            2 MRDIGLRVQPPAEK----CDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPC   77 (113)
T ss_dssp             CCCCCTTCCCCSSC----CCCSSSTTSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTT
T ss_pred             chhcCCCCCCCccc----ccCCCCCCcceeeEeeEEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCC
Confidence            68999999999755    55999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCEEEEeeeecCCCceeEEEEEEEecCcc
Q psy10000        152 FRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTGS  186 (193)
Q Consensus       152 ~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~~~  186 (193)
                      + +|++||+|+|+|||||||||+|+|++|+++|..
T Consensus        78 n-~~~vGD~V~I~E~RPlSKtKr~~vv~i~~~a~~  111 (113)
T 3j20_R           78 I-NAKVGDKVLIAETRPLSKTKHFVVVAVLERAEE  111 (113)
T ss_dssp             S-CCCTTSEEEEEECSCSSSSEEEEEEEECCCCCC
T ss_pred             C-CCCCCCEEEEEecccCCCcEeEEEEEEEecccc
Confidence            4 999999999999999999999999999999864

>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=1.4e-41  Score=272.44  Aligned_cols=92  Identities=24%  Similarity=0.274  Sum_probs=76.4

Q ss_pred             CcCCCceeeeeeec-eEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCC
Q psy10000         92 DKKCPFTGNVSIRG-RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLS  170 (193)
Q Consensus        92 d~~cPf~g~~~irg-~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlS  170 (193)
                      |++|||||+|+||| ++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||||+|  +|++||+|+|+||||||
T Consensus        46 ~~~cP~~G~lsvrg~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHDe~n--~~kvGD~V~I~E~RPLS  123 (142)
T 3bbn_Q           46 PNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDN--QFKVGDVVRLEKSRPIS  123 (142)
T ss_dssp             --------------CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTC--CCCTTEEEEEEECCCSS
T ss_pred             CCcCCCCccccccceEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEECCCC--CCCCCCEEEEEEccCCC
Confidence            99999999999999 9999999999999999999999999999999999999999999998  89999999999999999


Q ss_pred             CceeEEEEEEEecCc
Q psy10000        171 KTVRFNVLKVTKGTG  185 (193)
Q Consensus       171 KtK~f~V~~v~~~~~  185 (193)
                      |+|+|+|++|++++.
T Consensus       124 KtKrw~VveIveka~  138 (142)
T 3bbn_Q          124 KTKSFVALPVIARAA  138 (142)
T ss_dssp             SSCCEEECCCSEEEC
T ss_pred             CcEEEEEEEEEeccc
Confidence            999999999998875

>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A

Probab=100.00  E-value=8.4e-35  Score=217.59  Aligned_cols=79  Identities=25%  Similarity=0.409  Sum_probs=76.1

Q ss_pred             ceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000        105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT  184 (193)
Q Consensus       105 g~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~  184 (193)
                      .++|+|+|+|++|+|||+|+++++++||+|+||++++++|+||||+|  +|++||+|+|+|||||||||+|+|++|++++
T Consensus         2 ~k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHDe~n--~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a   79 (89)
T 1qd7_I            2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHN--EAKVGDIVKIMETRPLSATKRFRLVEIVEKA   79 (89)
T ss_pred             cEEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeCCcc--CCCCCCEEEEEEcccCCCCEEEEEEEEEeec
Confidence            47999999999999999999999999999999999999999999998  8999999999999999999999999999876


Q ss_pred             c
Q psy10000        185 G  185 (193)
Q Consensus       185 ~  185 (193)
                      .
T Consensus        80 ~   80 (89)
T 1qd7_I           80 V   80 (89)
T ss_pred             e
Confidence            3

>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...

Probab=100.00  E-value=2.4e-33  Score=215.27  Aligned_cols=79  Identities=30%  Similarity=0.464  Sum_probs=76.1

Q ss_pred             ceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000        105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT  184 (193)
Q Consensus       105 g~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~  184 (193)
                      .++|+|+|+|++|+|||+|++++++|||+|+||++++++|+||||+|  +|++||+|+|+|||||||||+|+|++|++++
T Consensus         3 ~k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHDe~n--~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a   80 (105)
T 2vqe_Q            3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEE--KYKLGDVVEIIESRPISKRKRFRVLRLVESG   80 (105)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTC--CCCTTCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             ceEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEECCCC--CCCCCCEEEEEEcccCCCCEEEEEEEEeecc
Confidence            37999999999999999999999999999999999999999999996  8999999999999999999999999999887


Q ss_pred             c
Q psy10000        185 G  185 (193)
Q Consensus       185 ~  185 (193)
                      .
T Consensus        81 ~   81 (105)
T 2vqe_Q           81 R   81 (105)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q

Probab=99.69  E-value=2.6e-18  Score=139.58  Aligned_cols=59  Identities=34%  Similarity=0.643  Sum_probs=53.2

Q ss_pred             cchhhhhccCcceeeceecccccCCCccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000          3 EQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT   63 (193)
Q Consensus         3 ~q~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~   63 (193)
                      +|+|+|||||++||+|++..  .+++..|||+||||||+||+|| ++.|+|.+|||++.-..
T Consensus         7 ~q~e~a~qkq~~i~~~~~~~--~~~~~~r~~~~iGl~~k~P~~a~~g~y~D~kCPf~G~lsv   66 (156)
T 3u5c_L            7 VQSERAFQKQPHIFNNPKVK--TSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSI   66 (156)
T ss_dssp             SSCSSSCCCCTTCCCCSSSC--CSSSSCCCCCCCSTTCCCCHHHHHCCCCCTTCTTTSSCCE
T ss_pred             hhhhhhhccCcceeeccccc--ccccCceeeeecCcCccCChhhccceeccccCCcccceeE
Confidence            39999999999999999953  3567889999999999999999 99999999999998753

>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.62  E-value=4.7e-09  Score=85.66  Aligned_cols=38  Identities=29%  Similarity=0.620  Sum_probs=25.1

Q ss_pred             CCCccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000         26 KRKELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT   63 (193)
Q Consensus        26 ~~k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~   63 (193)
                      +++..|||+||||||+||+|| ++.|+|..|||++.-..
T Consensus        29 ~~~~~r~~k~iGl~~k~P~~a~~g~y~D~kCPf~G~lsi   67 (161)
T 3iz6_P           29 GKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSI   67 (161)
T ss_dssp             -----------CCCCCCEEEECCCCSSSSCCSEEEEEEE
T ss_pred             cccCceEEEecCcCCCCChHHhcCcccccCCCccceeEE
Confidence            457889999999999999999 99999999999998753

>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q

Probab=98.54  E-value=9.5e-09  Score=83.63  Aligned_cols=38  Identities=34%  Similarity=0.702  Sum_probs=0.0

Q ss_pred             CCCccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000         26 KRKELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT   63 (193)
Q Consensus        26 ~~k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~   63 (193)
                      +++..||||||||||+||+|| ++.|.|.+|||.+.-..
T Consensus        30 ~~~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsv   68 (158)
T 2zkq_q           30 KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSI   68 (158)
T ss_dssp             ---------------------------------------
T ss_pred             cccCceEEEecccCccCChHHhcccccCCCCCCccccce
Confidence            367899999999999999999 99999999999998653

>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q

Probab=98.35  E-value=7.9e-08  Score=78.13  Aligned_cols=36  Identities=31%  Similarity=0.736  Sum_probs=33.1

Q ss_pred             CccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000         28 KELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT   63 (193)
Q Consensus        28 k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~   63 (193)
                      +..||||||||||+||.|| ++.|.|.+|||.+.-..
T Consensus        29 ~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsv   65 (157)
T 2xzm_Q           29 AGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFTSNLSI   65 (157)
T ss_dssp             SSCCCCCCCCSSCCCCHHHHTCCCCCTTCSSSSSCCC
T ss_pred             cCceeEEecccCCcCChHHhcccccCCCCCCccceee
Confidence            4679999999999999999 99999999999998754

>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=96.58  E-value=0.00036  Score=53.89  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=23.9

Q ss_pred             eccCcccccchhhhhhhccCcceeeecccc
Q psy10000         34 RDVGLGFKSPRETERAFQKQPTIFLARKPT   63 (193)
Q Consensus        34 K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~   63 (193)
                      +||||||+||+   ++|.|..|||++.-..
T Consensus         3 ~~igl~~~~p~---~~~~d~~cPf~G~~~v   29 (113)
T 3j20_R            3 RDIGLRVQPPA---EKCDDPKCPWHGNLKI   29 (113)
T ss_dssp             CCCCTTCCCCS---SCCCCSSSTTSSSCCC
T ss_pred             hhcCCCCCCCc---ccccCCCCCCcceeeE
Confidence            79999999995   5699999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d2uubq1	100	b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus	2e-20
d2gy9q1	78	b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherich	2e-19
d1ripa_	81	b.40.4.5 (A:) Ribosomal protein S17 {Bacillus stea	8e-19

>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus thermophilus [TaxId: 274]} Length = 100

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Thermus thermophilus [TaxId: 274]

 Score = 79.4 bits (196), Expect = 2e-20
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGE 165
           ++L G+V   KMQ+T+ +  +       Y +  KR +    H        ++GDVV + E
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPE--EKYKLGDVVEIIE 60

Query: 166 CRPLSKTVRFNVLKVTK 182
            RP+SK  RF VL++ +
Sbjct: 61  SRPISKRKRFRVLRLVE 77

>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Escherichia coli [TaxId: 562]

 Score = 76.6 bits (189), Expect = 2e-19
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGE 165
           R L G V   KM+++IV+  +       Y +F KR   + VH      +  IGDVV + E
Sbjct: 1   RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDEN--NECGIGDVVEIRE 58

Query: 166 CRPLSKTVRFNVLKVTK 182
           CRPLSKT  + +++V +
Sbjct: 59  CRPLSKTKSWTLVRVVE 75

>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus stearothermophilus [TaxId: 1422]} Length = 81

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 74.7 bits (184), Expect = 8e-19
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 104 RGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           + ++ +G V   KM +TI +  +       Y +  K  +    H      + ++GD+V +
Sbjct: 1   QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEH--NEAKVGDIVKI 58

Query: 164 GECRPLSKTVRFNVLKVTK 182
            E RPLS T RF ++++ +
Sbjct: 59  METRPLSATKRFRLVEIVE 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d2gy9q1	78	Ribosomal protein S17 {Escherichia coli [TaxId: 56	100.0
d2uubq1	100	Ribosomal protein S17 {Thermus thermophilus [TaxId	99.98
d1ripa_	81	Ribosomal protein S17 {Bacillus stearothermophilus	99.97

>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-33  Score=204.78  Aligned_cols=77  Identities=36%  Similarity=0.572  Sum_probs=74.9

Q ss_pred             eEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000        106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT  184 (193)
Q Consensus       106 ~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~  184 (193)
                      ++|.|+|+|++|+|||+|+++++++||+|+|+++++++|+||||+|  +|++||+|+|+|||||||+|+|+|++|++++
T Consensus         1 r~l~G~Vvs~km~KTv~V~v~r~~~h~ky~K~~~~~kky~aHDe~~--~~~~GD~V~I~e~rPlSK~K~~~v~~iv~ka   77 (78)
T d2gy9q1           1 RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENN--ECGIGDVVEIRECRPLSKTKSWTLVRVVEKA   77 (78)
T ss_dssp             CEEEEEEEECCSSSEEEEEEEEEEECSSSCCEEEEEEEEEEECTTC--CCCTTCEEEEEECSCSSSSCCEEEEEEEESC
T ss_pred             CEEEEEEEecCCCCcEEEEEEEEEEcCccCEEEEeeEEEEEECCCC--CCccccEEEEEEcCcCCCcEEEEEEEEEecc
Confidence            5899999999999999999999999999999999999999999998  8999999999999999999999999999876

>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=1.1e-32  Score=208.10  Aligned_cols=79  Identities=30%  Similarity=0.464  Sum_probs=76.3

Q ss_pred             ceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000        105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT  184 (193)
Q Consensus       105 g~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~  184 (193)
                      .++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||||+|  .|++||+|+|+|||||||+|+|+|++|++++
T Consensus         2 kr~l~G~Vvs~km~KTv~V~v~r~~~h~ky~K~~~r~kk~~vHD~~n--~~k~GD~V~I~e~rPlSK~K~~~v~~Iv~ka   79 (100)
T d2uubq1           2 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEE--KYKLGDVVEIIESRPISKRKRFRVLRLVESG   79 (100)
T ss_dssp             CCEEEEEECCCCBTTEEEEEEEEEEEETTTEEEEEEEEEEEEECTTC--CCCTTCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             CeEEEEEEEEcCCCCcEEEEEEEEEeccccCEEEEeeEEEEEECCCC--CCCCCCEEEEEECcCCCCceEEEEEEEEecc
Confidence            47899999999999999999999999999999999999999999997  7999999999999999999999999999987


Q ss_pred             c
Q psy10000        185 G  185 (193)
Q Consensus       185 ~  185 (193)
                      .
T Consensus        80 ~   80 (100)
T d2uubq1          80 R   80 (100)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S17
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=7.7e-34  Score=207.27  Aligned_cols=79  Identities=25%  Similarity=0.429  Sum_probs=76.1

Q ss_pred             eceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEec
Q psy10000        104 RGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKG  183 (193)
Q Consensus       104 rg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~  183 (193)
                      +.++|.|+|+|++|+|||+|++++++|||+|++|++++++|+||||+|  +|++||+|+|+|||||||+|+|+|++|+++
T Consensus         1 ~rk~~~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~kr~kk~~aHd~~~--~~~~GD~V~I~e~rPlSK~K~~~v~~Ii~k   78 (81)
T d1ripa_           1 QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHN--EAKVGDIVKIMETRPLSATKRFRLVEIVEK   78 (81)
T ss_dssp             CCSCBCCEESCCCSSSCSCCCBCCSCCCSCSSSCCCCSBCCCCCCCST--TCSSCEECCBCCCCCSSSCCCCCCCCCBSS
T ss_pred             CCcEEEEEEEecCCCCcEEEEEEEEEEcCccCEEEEeeEEEEEECCCC--CCccCCEEEEEEccCCCCCeeEEEEEEehH
Confidence            357899999999999999999999999999999999999999999997  899999999999999999999999999987


Q ss_pred             C
Q psy10000        184 T  184 (193)
Q Consensus       184 ~  184 (193)
                      +
T Consensus        79 a   79 (81)
T d1ripa_          79 A   79 (81)
T ss_dssp             S
T ss_pred             h
Confidence            6