Psyllid ID: psy10189

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKRRKSAKTKDETTVREQE
Secondary Structure (PSIPRED)
cEEEEEEccccccccccccccccEEEEEccccccccEEccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEccccccccEEEEEEcccccEEEEEEEcccccEEEEEEEcccHHHHHcccccccccccccccccccccccccEEccccccccccccccEEcccEEEEEEcccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEEccccccccEEEEEEEccccEEEEEEEcccccEEEccEEcccHHHHHHHHHHccccccccccccccccccEEEEEEcccccccccccccccccEEEEEcccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEcccEccccccEccEccccEEEEEEEcccccEEEEEccccEEEEccccccHHHcccEEEEccHHHHHHHHccccccEEEEEEcccccccEEEEEEEccEEEEEEcEEcccccEEccccEEccHHHHHHHccccccccccccccEcccccccEEEEcccEccccccEccEccccEEEEEEcccccEEEEEEccEEEEEEHHHEEEcccccccccccccccccccccccccHHHcccEEEEccHHHHHHHHccccccEEEEEEcccccccEEEEEEEccEEEEEEcEEcccccEEccccEEccHHHHHHHccccccccccccccEcccccccEEEEcccEccccccEccEccHHHHHHHccccccccEEEEccc
Coil and Loop (DISEMBL)
MEAIAkhdfnataedELSFRKSQVLKILNMEDDMNWYRAeldgkeglipsnyiemknhdwyygriTRADAERLLSNKHEGAFLIRvsesspgdfslsvkcsdgvqhfKVLRDSSGKFFLWVVKFNSLNELVEYHrtasvsrsqdvklrdmvpeECLVQAlydftpqepgelefrrgdvitvtdrsdqhwwhgeigarkglfpatyILNMEDDMNWYRAeldgkeglipsnyiemknhdwyygriTRADAERLLSNKHEGAFLIRvsesspgdfslsvkcsdgvqhfKVLRDSSGKFFLWVVKFNSLNELVEYHrtasvsrsqdvklrdmvpeECLVQAlydftpqepgelefRRDLKIKrrksaktkdettvreqe
Flexible Loop (DISEMBL)
meaiakhdfnataedelsfrKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEyhrtasvsrsqdvklrDMVPEECLVQALYdftpqepgelefRRGDVITvtdrsdqhwwhgeigarkglFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEyhrtasvsrsqdvklRDMVPEECLVQAlydftpqepgelefrrdlkikrrksaktkdettvreqe
Low Complexity Region (SEG)
MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKRRKSAKTKDETTVREQE
Disordered region (IsUnstruct)
********************KSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVS****GDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVS****GDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFT*********************************
Disordered Region (DISOPRED)
MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYY*********************I*V*E*S*G**SLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED*********************EMKNHDWYYGRITR******L*NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR*MV*****VQALYDFTPQEPGELEFRRDLKIKRRKSAKTKDETTVRE**
Disordered Region (DISEMBL)
MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKR****************
Disordered Region (DISPRO)
MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKRRKSAKTKDETTVR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKRRKSAKTKDETTVREQE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
Q6YKA8	211	Protein E(sev)2B OS=Droso	N/A	N/A	0.547	0.976	0.893	1e-109
Q08012	211	Protein enhancer of seven	yes	N/A	0.547	0.976	0.893	1e-109
P62994	217	Growth factor receptor-bo	yes	N/A	0.547	0.949	0.642	8e-75
Q5R4J7	217	Growth factor receptor-bo	yes	N/A	0.547	0.949	0.642	8e-75
P62993	217	Growth factor receptor-bo	yes	N/A	0.547	0.949	0.642	8e-75
Q60631	217	Growth factor receptor-bo	yes	N/A	0.547	0.949	0.638	2e-74
Q6GPJ9	229	Growth factor receptor-bo	N/A	N/A	0.566	0.930	0.593	1e-73
P87379	229	Growth factor receptor-bo	N/A	N/A	0.566	0.930	0.593	2e-73
Q66II3	229	Growth factor receptor-bo	yes	N/A	0.566	0.930	0.585	6e-73
Q07883	217	Growth factor receptor-bo	yes	N/A	0.547	0.949	0.628	9e-73

>sp|Q6YKA8|DRK_DROSI Protein E(sev)2B OS=Drosophila simulans GN=drk PE=3 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/206 (89%), Positives = 198/206 (96%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKHDF+ATA+DELSFRK+Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHDW
Sbjct: 1   MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAE+LLSNKHEGAFLIR+SESSPGDFSLSVKC DGVQHFKVLRD+  KFFLW
Sbjct: 61  YYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKVLRDAQSKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKFNSLNELVEYHRTASVSRSQDVKLRDM+PEE LVQALYDF PQE GEL+FRRGDVIT
Sbjct: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMIPEEMLVQALYDFVPQESGELDFRRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDRSD++WW+GEIG RKG+FPATY+
Sbjct: 181 VTDRSDENWWNGEIGNRKGIFPATYV 206

Required for proper signaling by sevenless. May act to stimulate the ability of Sos to catalyze Ras1 activation by linking sevenless and Sos in a signaling complex.
Drosophila simulans (taxid: 7240)

>sp|Q08012|DRK_DROME Protein enhancer of sevenless 2B OS=Drosophila melanogaster GN=drk PE=1 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/206 (89%), Positives = 198/206 (96%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKHDF+ATA+DELSFRK+Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHDW
Sbjct: 1   MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAE+LLSNKHEGAFLIR+SESSPGDFSLSVKC DGVQHFKVLRD+  KFFLW
Sbjct: 61  YYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKVLRDAQSKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKFNSLNELVEYHRTASVSRSQDVKLRDM+PEE LVQALYDF PQE GEL+FRRGDVIT
Sbjct: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMIPEEMLVQALYDFVPQESGELDFRRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDRSD++WW+GEIG RKG+FPATY+
Sbjct: 181 VTDRSDENWWNGEIGNRKGIFPATYV 206

Required for proper signaling by sevenless. May act to stimulate the ability of Sos to catalyze Ras1 activation by linking sevenless and Sos in a signaling complex.

Drosophila melanogaster (taxid: 7227)

>sp|P62994|GRB2_RAT Growth factor receptor-bound protein 2 OS=Rattus norvegicus GN=Grb2 PE=1 SV=1

 Score =  281 bits (718), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 166/210 (79%), Gaps = 4/210 (1%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           D I V D SD +WW G    + G+FP  Y+
Sbjct: 181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q5R4J7|GRB2_PONAB Growth factor receptor-bound protein 2 OS=Pongo abelii GN=GRB2 PE=2 SV=1

 Score =  281 bits (718), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 166/210 (79%), Gaps = 4/210 (1%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           D I V D SD +WW G    + G+FP  Y+
Sbjct: 181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway.

Pongo abelii (taxid: 9601)

>sp|P62993|GRB2_HUMAN Growth factor receptor-bound protein 2 OS=Homo sapiens GN=GRB2 PE=1 SV=1

 Score =  281 bits (718), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 166/210 (79%), Gaps = 4/210 (1%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           D I V D SD +WW G    + G+FP  Y+
Sbjct: 181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

Isoform 2 does not bind to phosphorylated epidermal growth factor receptor (EGFR) but inhibits EGF-induced transactivation of a RAS-responsive element. Isoform 2 acts as a dominant negative protein over GRB2 and by suppressing proliferative signals, may trigger active programmed cell death.

Homo sapiens (taxid: 9606)

>sp|Q60631|GRB2_MOUSE Growth factor receptor-bound protein 2 OS=Mus musculus GN=Grb2 PE=1 SV=1

 Score =  280 bits (715), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/210 (63%), Positives = 163/210 (77%), Gaps = 4/210 (1%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRD---MVPEECLVQALYDFTPQEPGELEFRRG 176
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD   M  +   VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQMPQQPTYVQALFDFDPQEDGELGFRRG 180

Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           D I V D SD +WW G    + G+FP  Y+
Sbjct: 181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

Isoform 2 does not bind to phosphorylated epidermal growth factor receptor (EGFR) but inhibits EGF-induced. transactivation of a RAS-responsive element. Isoform 2 acts as a dominant negative protein over GRB2 and by suppressing proliferative signals, may trigger active programmed cell death.

Mus musculus (taxid: 10090)

>sp|Q6GPJ9|GRB2B_XENLA Growth factor receptor-bound protein 2-B OS=Xenopus laevis GN=grb2-b PE=1 SV=1

 Score =  276 bits (707), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/229 (59%), Positives = 167/229 (72%), Gaps = 16/229 (6%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  VLK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDVLKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +L   +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLGKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VP-------------EECLVQALYDFT 164
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP             +   VQAL+DF 
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQVHGGDRATSLPQQPTFVQALFDFD 180

Query: 165 PQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
           PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+  +  +M
Sbjct: 181 PQEDGELGFRRGDFIQVVDNSDPNWWKGTCLGQTGMFPRNYVTPVNRNM 229

Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway (By similarity). Promotes meiotic reinitiation during oocyte maturation.

Xenopus laevis (taxid: 8355)

>sp|P87379|GRB2A_XENLA Growth factor receptor-bound protein 2-A OS=Xenopus laevis GN=grb2-a PE=1 SV=2

 Score =  276 bits (706), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/229 (59%), Positives = 168/229 (73%), Gaps = 16/229 (6%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  VLK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDVLKVLNEECDQNWYKAELNGKDGFIPKNYIEMKAHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +L   +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLGKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VP-------------EECLVQALYDFT 164
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP             +   VQAL+DF 
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQVHGGDRATSLPQQPTYVQALFDFD 180

Query: 165 PQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
           PQE GEL FRRGD I V D SD +WW G   ++ G+FP  Y+  +  +M
Sbjct: 181 PQEDGELGFRRGDFIQVVDNSDPNWWKGTCLSQTGMFPRNYVTPVNRNM 229

Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway (By similarity). Promotes meiotic reinitiation during oocyte maturation.

Xenopus laevis (taxid: 8355)

>sp|Q66II3|GRB2_XENTR Growth factor receptor-bound protein 2 OS=Xenopus tropicalis GN=grb2 PE=2 SV=1

 Score =  275 bits (702), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 134/229 (58%), Positives = 167/229 (72%), Gaps = 16/229 (6%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEA+AK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAVAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +L   +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLGKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VP-------------EECLVQALYDFT 164
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP             +   VQAL+DF 
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQVHGGDRATNLLQQPTYVQALFDFD 180

Query: 165 PQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
           PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+  +  +M
Sbjct: 181 PQEDGELGFRRGDFIQVVDNSDPNWWKGTCLGQTGMFPRNYVTPVNRNM 229

Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway (By similarity). Promotes meiotic reinitiation during oocyte maturation.

Xenopus tropicalis (taxid: 8364)

>sp|Q07883|GRB2_CHICK Growth factor receptor-bound protein 2 OS=Gallus gallus GN=GRB2 PE=1 SV=1

 Score =  274 bits (700), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 132/210 (62%), Positives = 162/210 (77%), Gaps = 4/210 (1%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKGGFIPKNYIEMKPHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +L   +H+GAFLIR SES+PGDFSLSVK  + VQ FKVLRD +GK+ L
Sbjct: 61  FFGKIPRAKAEEMLGKQRHDGAFLIRESESAPGDFSLSVKFGNDVQQFKVLRDGAGKYLL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEEGELGFRRG 180

Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           D I V D SD +WW G    + G+FP  Y+
Sbjct: 181 DFIQVLDNSDPNWWKGACHGQTGMFPRNYV 210

Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
156548550	211	PREDICTED: protein enhancer of sevenless	0.481	0.857	0.927	1e-112
66524277	211	PREDICTED: protein enhancer of sevenless	0.481	0.857	0.922	1e-112
380012053	259	PREDICTED: protein enhancer of sevenless	0.478	0.694	0.926	1e-111
91089049	211	PREDICTED: similar to AGAP011768-PA [Tri	0.481	0.857	0.922	1e-111
242017402	211	protein E, putative [Pediculus humanus c	0.481	0.857	0.917	1e-111
383865247	264	PREDICTED: protein enhancer of sevenless	0.545	0.776	0.904	1e-110
158300944	211	AGAP011768-PA [Anopheles gambiae str. PE	0.481	0.857	0.917	1e-109
332022831	280	Protein E(sev)2B [Acromyrmex echinatior]	0.545	0.732	0.856	1e-108
289741843	211	downstream of receptor kinase [Glossina	0.481	0.857	0.893	1e-107
17136708	211	downstream of receptor kinase, isoform A	0.547	0.976	0.893	1e-107

>gi|156548550|ref|XP_001605040.1| PREDICTED: protein enhancer of sevenless 2B-like [Nasonia vitripennis]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/206 (92%), Positives = 201/206 (97%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKHDF ATAEDELSFR++QVLKILNMEDDMNWYRAELD +EGLIPSNYIEMKNHDW
Sbjct: 1   MEAIAKHDFTATAEDELSFRRNQVLKILNMEDDMNWYRAELDSREGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAERLL NKHEGAFLIR+SESSPGDFSLSVKCSDGVQHFKVLRD+ GKFFLW
Sbjct: 61  YYGRITRADAERLLMNKHEGAFLIRISESSPGDFSLSVKCSDGVQHFKVLRDAQGKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKF+SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT
Sbjct: 121 VVKFSSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDR+DQHWWHGEIG R+GLFP+TY+
Sbjct: 181 VTDRADQHWWHGEIGNRRGLFPSTYV 206

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66524277|ref|XP_623354.1| PREDICTED: protein enhancer of sevenless 2B [Apis mellifera] gi|340724886|ref|XP_003400809.1| PREDICTED: protein enhancer of sevenless 2B-like [Bombus terrestris] gi|350422009|ref|XP_003493027.1| PREDICTED: protein enhancer of sevenless 2B-like [Bombus impatiens]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/206 (92%), Positives = 200/206 (97%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKHDF ATAEDELSFR+SQ+LKILNMEDDMNWYRAELD +EGLIPSNYIEMKNHDW
Sbjct: 1   MEAIAKHDFTATAEDELSFRRSQILKILNMEDDMNWYRAELDSREGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAERLL NKHEGAFLIR+SESSPGDFSLSVKCSDGVQHFKVLRD+ GKFFLW
Sbjct: 61  YYGRITRADAERLLMNKHEGAFLIRISESSPGDFSLSVKCSDGVQHFKVLRDAQGKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDF PQEPGELEF+RGDVIT
Sbjct: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFQPQEPGELEFKRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDR+DQHWWHGEIG R+GLFP+TY+
Sbjct: 181 VTDRTDQHWWHGEIGNRRGLFPSTYV 206

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012053|ref|XP_003690104.1| PREDICTED: protein enhancer of sevenless 2B-like [Apis florea]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/205 (92%), Positives = 199/205 (97%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKHDF ATAEDELSFR+SQ+LKILNMEDDMNWYRAELD +EGLIPSNYIEMKNHDW
Sbjct: 1   MEAIAKHDFTATAEDELSFRRSQILKILNMEDDMNWYRAELDSREGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAERLL NKHEGAFLIR+SESSPGDFSLSVKCSDGVQHFKVLRD+ GKFFLW
Sbjct: 61  YYGRITRADAERLLMNKHEGAFLIRISESSPGDFSLSVKCSDGVQHFKVLRDAQGKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDF PQEPGELEF+RGDVIT
Sbjct: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFQPQEPGELEFKRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATY 205
           VTDR+DQHWWHGEIG R+GLFP+TY
Sbjct: 181 VTDRTDQHWWHGEIGNRRGLFPSTY 205

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089049|ref|XP_969998.1| PREDICTED: similar to AGAP011768-PA [Tribolium castaneum] gi|270012400|gb|EFA08848.1| hypothetical protein TcasGA2_TC006549 [Tribolium castaneum]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/206 (92%), Positives = 201/206 (97%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKH+FNATA+DELSFR+SQVLKILNMEDDMNWYRAELDG+EGLIPSNYIEMKNH W
Sbjct: 1   MEAIAKHEFNATADDELSFRRSQVLKILNMEDDMNWYRAELDGREGLIPSNYIEMKNHSW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAE+LLSNKHEGAFLIR+SESSPGDFSLSVKCSDGVQHFKVLRD+ GKFFLW
Sbjct: 61  YYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCSDGVQHFKVLRDAQGKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKFNSLNELVEYHRT+SVSRSQDVKL+DMV EECLVQALYDFTPQE GELEFRRGDVIT
Sbjct: 121 VVKFNSLNELVEYHRTSSVSRSQDVKLKDMVAEECLVQALYDFTPQEAGELEFRRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDRSDQHWWHGEIG R+GLFPATY+
Sbjct: 181 VTDRSDQHWWHGEIGHRRGLFPATYV 206

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017402|ref|XP_002429178.1| protein E, putative [Pediculus humanus corporis] gi|212514056|gb|EEB16440.1| protein E, putative [Pediculus humanus corporis]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/206 (91%), Positives = 201/206 (97%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKHDFNATAEDELSFRK+QVLK+LNMEDDMNWYRAELD KEGLIPSNYIEMKNHDW
Sbjct: 1   MEAIAKHDFNATAEDELSFRKTQVLKVLNMEDDMNWYRAELDSKEGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAE+LL NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD+ GKFFLW
Sbjct: 61  YYGRITRADAEKLLMNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDAQGKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKF+SLNELVEYHRT+SVSRSQ VKLRDMVP+ECLVQA+YDFTPQE GEL+FRRGDVIT
Sbjct: 121 VVKFSSLNELVEYHRTSSVSRSQHVKLRDMVPDECLVQAVYDFTPQEAGELDFRRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDR+DQHWWHGEIG+RKGLFPATY+
Sbjct: 181 VTDRTDQHWWHGEIGSRKGLFPATYV 206

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865247|ref|XP_003708086.1| PREDICTED: protein enhancer of sevenless 2B-like [Megachile rotundata]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/210 (90%), Positives = 199/210 (94%), Gaps = 5/210 (2%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLK-----ILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
           MEAIAKHDF ATAEDELSFR+SQ+LK     ILNMEDDMNWYRAELD +EGLIPSNYIEM
Sbjct: 1   MEAIAKHDFTATAEDELSFRRSQILKVCTSLILNMEDDMNWYRAELDSREGLIPSNYIEM 60

Query: 56  KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
           KNHDWYYGRITRADAERLL NKHEGAFLIR+SESSPGDFSLSVKCSDGVQHFKVLRD+ G
Sbjct: 61  KNHDWYYGRITRADAERLLMNKHEGAFLIRISESSPGDFSLSVKCSDGVQHFKVLRDAQG 120

Query: 116 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRR 175
           KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDF PQEPGELEF+R
Sbjct: 121 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFQPQEPGELEFKR 180

Query: 176 GDVITVTDRSDQHWWHGEIGARKGLFPATY 205
           GDVITVTDR+DQHWWHGEIG R+GLFP+TY
Sbjct: 181 GDVITVTDRTDQHWWHGEIGNRRGLFPSTY 210

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300944|ref|XP_320742.3| AGAP011768-PA [Anopheles gambiae str. PEST] gi|157013402|gb|EAA00404.4| AGAP011768-PA [Anopheles gambiae str. PEST]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/206 (91%), Positives = 199/206 (96%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEA+AKHDFNATA+DELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW
Sbjct: 1   MEAVAKHDFNATADDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAE+LLSNKHEGAFLIR+SESSPGDFSLSVKCSDGVQHFKVLRD+ GKFFLW
Sbjct: 61  YYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCSDGVQHFKVLRDAQGKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKFNSLNELV+YHRTASVSRSQDVKLRDMVPEE LVQALYDF  QE GEL+FRRGDVIT
Sbjct: 121 VVKFNSLNELVDYHRTASVSRSQDVKLRDMVPEEMLVQALYDFVAQESGELDFRRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDRSD+HWW+GEIG RKGLFPA Y+
Sbjct: 181 VTDRSDEHWWNGEIGNRKGLFPAIYV 206

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022831|gb|EGI63104.1| Protein E(sev)2B [Acromyrmex echinatior]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/223 (85%), Positives = 199/223 (89%), Gaps = 18/223 (8%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLK------------------ILNMEDDMNWYRAELD 42
           MEAIAKHDF ATAEDELSFR+SQVLK                  ILNMEDDMNWYRAELD
Sbjct: 1   MEAIAKHDFTATAEDELSFRRSQVLKVGRTSEMATWADPYPRHLILNMEDDMNWYRAELD 60

Query: 43  GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 102
            +EGLIPSNYIEMK+HDWYYGRITRADAERLL NKHEGAFLIR+SESSPGDFSLSVKCSD
Sbjct: 61  SREGLIPSNYIEMKSHDWYYGRITRADAERLLMNKHEGAFLIRISESSPGDFSLSVKCSD 120

Query: 103 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYD 162
           GVQHFKVLRD+ GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYD
Sbjct: 121 GVQHFKVLRDAQGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYD 180

Query: 163 FTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
           F PQEPGELEFRRGDVITVTDR+DQHWWHGEIG R+GLFP+TY
Sbjct: 181 FAPQEPGELEFRRGDVITVTDRTDQHWWHGEIGNRRGLFPSTY 223

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741843|gb|ADD19669.1| downstream of receptor kinase [Glossina morsitans morsitans]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/206 (89%), Positives = 199/206 (96%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKHDF+ATA+DELSFRK+Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHDW
Sbjct: 1   MEAIAKHDFSATADDELSFRKNQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAE+LLSNKHEGAFLIR+SESSPGDFSLSVKC DGVQHFKVLRD+ GKFFLW
Sbjct: 61  YYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKVLRDAQGKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKFNSLNELVEYHRTASVSRSQDVKLRDM+PEE LVQALYDF PQE GEL+FRRGDVIT
Sbjct: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMIPEEMLVQALYDFVPQESGELDFRRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDRSD++WW+GEIG RKG+FP+TY+
Sbjct: 181 VTDRSDENWWNGEIGNRKGIFPSTYV 206

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136708|ref|NP_476858.1| downstream of receptor kinase, isoform A [Drosophila melanogaster] gi|24653398|ref|NP_725302.1| downstream of receptor kinase, isoform B [Drosophila melanogaster] gi|24653400|ref|NP_725303.1| downstream of receptor kinase, isoform C [Drosophila melanogaster] gi|24653402|ref|NP_725304.1| downstream of receptor kinase, isoform D [Drosophila melanogaster] gi|24653404|ref|NP_725305.1| downstream of receptor kinase, isoform E [Drosophila melanogaster] gi|24653406|ref|NP_725306.1| downstream of receptor kinase, isoform F [Drosophila melanogaster] gi|195058409|ref|XP_001995447.1| GH22624 [Drosophila grimshawi] gi|195400535|ref|XP_002058872.1| GJ19679 [Drosophila virilis] gi|195425486|ref|XP_002061033.1| GK10660 [Drosophila willistoni] gi|195484967|ref|XP_002090896.1| GE13357 [Drosophila yakuba] gi|729368|sp|Q08012.1|DRK_DROME RecName: Full=Protein enhancer of sevenless 2B; Short=Protein E(sev)2B; AltName: Full=Downstream of receptor kinase; AltName: Full=SH2-SH3 adapter protein drk gi|52000619|sp|Q6YKA8.1|DRK_DROSI RecName: Full=Protein E(sev)2B; AltName: Full=Downstream of receptor kinase; AltName: Full=Protein enhancer of sevenless 2B; AltName: Full=SH2-SH3 adapter protein drk gi|304809|gb|AAA28898.1| downstream of receptor kinases (drk) [Drosophila melanogaster] gi|7303308|gb|AAF58368.1| downstream of receptor kinase, isoform A [Drosophila melanogaster] gi|16768942|gb|AAL28690.1| LD12029p [Drosophila melanogaster] gi|21627236|gb|AAM68581.1| downstream of receptor kinase, isoform B [Drosophila melanogaster] gi|21627237|gb|AAM68582.1| downstream of receptor kinase, isoform C [Drosophila melanogaster] gi|21627238|gb|AAM68583.1| downstream of receptor kinase, isoform D [Drosophila melanogaster] gi|21627239|gb|AAM68584.1| downstream of receptor kinase, isoform E [Drosophila melanogaster] gi|21627240|gb|AAM68585.1| downstream of receptor kinase, isoform F [Drosophila melanogaster] gi|23344808|gb|AAN17564.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344810|gb|AAN17565.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344812|gb|AAN17566.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344814|gb|AAN17567.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344816|gb|AAN17568.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344818|gb|AAN17569.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344820|gb|AAN17570.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344822|gb|AAN17571.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344824|gb|AAN17572.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344826|gb|AAN17573.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344828|gb|AAN17574.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344830|gb|AAN17575.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344832|gb|AAN17576.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344834|gb|AAN17577.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344836|gb|AAN17578.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344838|gb|AAN17579.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344840|gb|AAN17580.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344842|gb|AAN17581.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344844|gb|AAN17582.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344846|gb|AAN17583.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344848|gb|AAN17584.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344850|gb|AAN17585.1| downstream of receptor kinase [Drosophila melanogaster] gi|23344994|gb|AAN17586.1| downstream of receptor kinase [Drosophila simulans] gi|193899653|gb|EDV98519.1| GH22624 [Drosophila grimshawi] gi|194156223|gb|EDW71407.1| GJ19679 [Drosophila virilis] gi|194157118|gb|EDW72019.1| GK10660 [Drosophila willistoni] gi|194176997|gb|EDW90608.1| GE13357 [Drosophila yakuba] gi|220943096|gb|ACL84091.1| drk-PA [synthetic construct] gi|220952784|gb|ACL88935.1| drk-PA [synthetic construct]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/206 (89%), Positives = 198/206 (96%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAKHDF+ATA+DELSFRK+Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHDW
Sbjct: 1   MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHDW 60

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           YYGRITRADAE+LLSNKHEGAFLIR+SESSPGDFSLSVKC DGVQHFKVLRD+  KFFLW
Sbjct: 61  YYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKVLRDAQSKFFLW 120

Query: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
           VVKFNSLNELVEYHRTASVSRSQDVKLRDM+PEE LVQALYDF PQE GEL+FRRGDVIT
Sbjct: 121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMIPEEMLVQALYDFVPQESGELDFRRGDVIT 180

Query: 181 VTDRSDQHWWHGEIGARKGLFPATYI 206
           VTDRSD++WW+GEIG RKG+FPATY+
Sbjct: 181 VTDRSDENWWNGEIGNRKGIFPATYV 206

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
FB|FBgn0004638	211	drk "downstream of receptor ki	0.547	0.976	0.893	1e-100
UNIPROTKB|Q6YKA8	211	drk "Protein E(sev)2B" [Drosop	0.547	0.976	0.893	1e-100
ZFIN|ZDB-GENE-041121-1	217	grb2a "growth factor receptor-	0.566	0.981	0.626	3.7e-71
UNIPROTKB|Q3T0F9	217	GRB2 "Growth factor receptor-b	0.547	0.949	0.642	7.7e-71
UNIPROTKB|P62993	217	GRB2 "Growth factor receptor-b	0.547	0.949	0.642	7.7e-71
UNIPROTKB|B6E241	217	GRB2 "Uncharacterized protein"	0.547	0.949	0.642	7.7e-71
UNIPROTKB|Q5R4J7	217	GRB2 "Growth factor receptor-b	0.547	0.949	0.642	7.7e-71
RGD|619758	217	Grb2 "growth factor receptor b	0.547	0.949	0.642	7.7e-71
MGI|MGI:95805	217	Grb2 "growth factor receptor b	0.547	0.949	0.638	1.6e-70
UNIPROTKB|A3R0S3	217	GRB2 "Growth factor receptor-b	0.547	0.949	0.638	1.6e-70

FB|FBgn0004638 drk "downstream of receptor kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 184/206 (89%), Positives = 198/206 (96%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAKHDF+ATA+DELSFRK+Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHDW
Sbjct:     1 MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHDW 60

Query:    61 YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
             YYGRITRADAE+LLSNKHEGAFLIR+SESSPGDFSLSVKC DGVQHFKVLRD+  KFFLW
Sbjct:    61 YYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKVLRDAQSKFFLW 120

Query:   121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
             VVKFNSLNELVEYHRTASVSRSQDVKLRDM+PEE LVQALYDF PQE GEL+FRRGDVIT
Sbjct:   121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMIPEEMLVQALYDFVPQESGELDFRRGDVIT 180

Query:   181 VTDRSDQHWWHGEIGARKGLFPATYI 206
             VTDRSD++WW+GEIG RKG+FPATY+
Sbjct:   181 VTDRSDENWWNGEIGNRKGIFPATYV 206

GO:0005118 "sevenless binding" evidence=IPI

GO:0045500 "sevenless signaling pathway" evidence=IGI;TAS;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005070 "SH3/SH2 adaptor activity" evidence=ISS;NAS;IPI

GO:0007265 "Ras protein signal transduction" evidence=ISS;NAS;IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0008595 "anterior/posterior axis specification, embryo" evidence=TAS

GO:0008293 "torso signaling pathway" evidence=TAS

GO:0008355 "olfactory learning" evidence=IMP;NAS

GO:0007613 "memory" evidence=NAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007614 "short-term memory" evidence=IMP

GO:0008306 "associative learning" evidence=IMP

GO:0045678 "positive regulation of R7 cell differentiation" evidence=IGI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IGI

UNIPROTKB|Q6YKA8 drk "Protein E(sev)2B" [Drosophila simulans (taxid:7240)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 184/206 (89%), Positives = 198/206 (96%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAKHDF+ATA+DELSFRK+Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHDW
Sbjct:     1 MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHDW 60

Query:    61 YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
             YYGRITRADAE+LLSNKHEGAFLIR+SESSPGDFSLSVKC DGVQHFKVLRD+  KFFLW
Sbjct:    61 YYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKCPDGVQHFKVLRDAQSKFFLW 120

Query:   121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVIT 180
             VVKFNSLNELVEYHRTASVSRSQDVKLRDM+PEE LVQALYDF PQE GEL+FRRGDVIT
Sbjct:   121 VVKFNSLNELVEYHRTASVSRSQDVKLRDMIPEEMLVQALYDFVPQESGELDFRRGDVIT 180

Query:   181 VTDRSDQHWWHGEIGARKGLFPATYI 206
             VTDRSD++WW+GEIG RKG+FPATY+
Sbjct:   181 VTDRSDENWWNGEIGNRKGIFPATYV 206

GO:0005070 "SH3/SH2 adaptor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

ZFIN|ZDB-GENE-041121-1 grb2a "growth factor receptor-bound protein 2a" [Danio rerio (taxid:7955)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 136/217 (62%), Positives = 168/217 (77%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAK+DF ATA+DELSF++ ++LK+LN E D NWY+AEL+GKEG IP NYIEMK H W
Sbjct:     1 MEAIAKYDFKATADDELSFKRGEILKVLNEECDQNWYKAELNGKEGFIPKNYIEMKPHPW 60

Query:    61 YYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
             +YG+I RA AE +L+  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct:    61 FYGKIPRAKAEEMLNKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query:   120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEECL-VQALYDFTPQEPGELEFRRG 176
             WVVKFNSLN LV+YHR+ SVSR+Q + LRD+  VP+    VQAL+DF PQE GEL FRRG
Sbjct:   121 WVVKFNSLNSLVDYHRSTSVSRNQPIFLRDIEQVPQNSTYVQALFDFDPQEDGELGFRRG 180

Query:   177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
             D I V D SD +WW G    + G+FP  Y+  +  +M
Sbjct:   181 DFIQVLDNSDPNWWKGACHGQTGMFPRNYVTPVNQNM 217

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q3T0F9 GRB2 "Growth factor receptor-bound protein 2" [Bos taurus (taxid:9913)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 135/210 (64%), Positives = 166/210 (79%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct:     1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query:    61 YYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
             ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct:    61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query:   120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
             WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct:   121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query:   177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             D I V D SD +WW G    + G+FP  Y+
Sbjct:   181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0071479 "cellular response to ionizing radiation" evidence=IEA

GO:0070436 "Grb2-EGFR complex" evidence=IEA

GO:0060670 "branching involved in labyrinthine layer morphogenesis" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0043560 "insulin receptor substrate binding" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042770 "signal transduction in response to DNA damage" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA

GO:0005154 "epidermal growth factor receptor binding" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

UNIPROTKB|P62993 GRB2 "Growth factor receptor-bound protein 2" [Homo sapiens (taxid:9606)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 135/210 (64%), Positives = 166/210 (79%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct:     1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query:    61 YYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
             ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct:    61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query:   120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
             WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct:   121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query:   177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             D I V D SD +WW G    + G+FP  Y+
Sbjct:   181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

GO:0019048 "virus-host interaction" evidence=IEA

GO:0001784 "phosphotyrosine binding" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0048646 "anatomical structure formation involved in morphogenesis" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0060670 "branching involved in labyrinthine layer morphogenesis" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007265 "Ras protein signal transduction" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008286 "insulin receptor signaling pathway" evidence=TAS;IPI

GO:0043560 "insulin receptor substrate binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IPI

GO:0017124 "SH3 domain binding" evidence=IDA

GO:0008180 "signalosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0031295 "T cell costimulation" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0042770 "signal transduction in response to DNA damage" evidence=IMP

GO:0071479 "cellular response to ionizing radiation" evidence=IMP

GO:0031623 "receptor internalization" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0070436 "Grb2-EGFR complex" evidence=IDA

UNIPROTKB|B6E241 GRB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 135/210 (64%), Positives = 166/210 (79%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct:     1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query:    61 YYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
             ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct:    61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query:   120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
             WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct:   121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query:   177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             D I V D SD +WW G    + G+FP  Y+
Sbjct:   181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0071479 "cellular response to ionizing radiation" evidence=IEA

GO:0070436 "Grb2-EGFR complex" evidence=IEA

GO:0060670 "branching involved in labyrinthine layer morphogenesis" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0043560 "insulin receptor substrate binding" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042770 "signal transduction in response to DNA damage" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA

GO:0005154 "epidermal growth factor receptor binding" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

UNIPROTKB|Q5R4J7 GRB2 "Growth factor receptor-bound protein 2" [Pongo abelii (taxid:9601)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 135/210 (64%), Positives = 166/210 (79%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct:     1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query:    61 YYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
             ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct:    61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query:   120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
             WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct:   121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query:   177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             D I V D SD +WW G    + G+FP  Y+
Sbjct:   181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0008180 "signalosome" evidence=ISS

GO:0017124 "SH3 domain binding" evidence=ISS

RGD|619758 Grb2 "growth factor receptor bound protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 135/210 (64%), Positives = 166/210 (79%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct:     1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query:    61 YYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
             ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct:    61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query:   120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
             WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct:   121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query:   177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             D I V D SD +WW G    + G+FP  Y+
Sbjct:   181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

GO:0001784 "phosphotyrosine binding" evidence=IPI

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA;ISO

GO:0005154 "epidermal growth factor receptor binding" evidence=ISO;ISS;IPI

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005768 "endosome" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=ISO

GO:0007265 "Ras protein signal transduction" evidence=TAS

GO:0007568 "aging" evidence=IPI

GO:0008180 "signalosome" evidence=ISO;ISS

GO:0008286 "insulin receptor signaling pathway" evidence=IEA;ISO

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISO

GO:0012506 "vesicle membrane" evidence=IEA;ISO

GO:0016020 "membrane" evidence=ISO

GO:0017124 "SH3 domain binding" evidence=ISO;ISS

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=ISO;IPI

GO:0030154 "cell differentiation" evidence=IEA;ISO

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA;ISO

GO:0031623 "receptor internalization" evidence=IEA;ISO

GO:0042770 "signal transduction in response to DNA damage" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

GO:0043408 "regulation of MAPK cascade" evidence=IEA;ISO

GO:0043560 "insulin receptor substrate binding" evidence=ISO;IPI

GO:0046875 "ephrin receptor binding" evidence=IEA;ISO

GO:0048646 "anatomical structure formation involved in morphogenesis" evidence=ISO

GO:0051219 "phosphoprotein binding" evidence=IPI

GO:0051291 "protein heterooligomerization" evidence=IDA

GO:0060670 "branching involved in labyrinthine layer morphogenesis" evidence=IEA;ISO

GO:0070436 "Grb2-EGFR complex" evidence=IEA;ISO

GO:0071479 "cellular response to ionizing radiation" evidence=IEA;ISO

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IEA;ISO

MGI|MGI:95805 Grb2 "growth factor receptor bound protein 2" [Mus musculus (taxid:10090)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 134/210 (63%), Positives = 166/210 (79%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct:     1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query:    61 YYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
             ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct:    61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query:   120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
             WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  +P++   VQAL+DF PQE GEL FRRG
Sbjct:   121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQMPQQPTYVQALFDFDPQEDGELGFRRG 180

Query:   177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             D I V D SD +WW G    + G+FP  Y+
Sbjct:   181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

GO:0001784 "phosphotyrosine binding" evidence=ISO

GO:0005070 "SH3/SH2 adaptor activity" evidence=IDA

GO:0005154 "epidermal growth factor receptor binding" evidence=ISO

GO:0005168 "neurotrophin TRKA receptor binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005768 "endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007265 "Ras protein signal transduction" evidence=TAS

GO:0007568 "aging" evidence=ISO

GO:0008180 "signalosome" evidence=ISO;IDA

GO:0008286 "insulin receptor signaling pathway" evidence=ISO

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0012506 "vesicle membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0019904 "protein domain specific binding" evidence=ISO;IPI

GO:0030154 "cell differentiation" evidence=IMP

GO:0030838 "positive regulation of actin filament polymerization" evidence=IGI

GO:0031623 "receptor internalization" evidence=ISO

GO:0042770 "signal transduction in response to DNA damage" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043408 "regulation of MAPK cascade" evidence=IGI

GO:0043560 "insulin receptor substrate binding" evidence=ISO

GO:0046875 "ephrin receptor binding" evidence=ISO;IPI

GO:0048646 "anatomical structure formation involved in morphogenesis" evidence=IMP

GO:0051219 "phosphoprotein binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0060670 "branching involved in labyrinthine layer morphogenesis" evidence=IMP

GO:0070436 "Grb2-EGFR complex" evidence=ISO

GO:0071479 "cellular response to ionizing radiation" evidence=ISO

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|A3R0S3 GRB2 "Growth factor receptor-bound protein 2" [Gallus gallus (taxid:9031)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 134/210 (63%), Positives = 165/210 (78%)

Query:     1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
             MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct:     1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query:    61 YYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
             ++G+I RA AE +L   +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct:    61 FFGKIPRAKAEEMLGKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query:   120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
             WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct:   121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEEGELGFRRG 180

Query:   177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             D I V D SD +WW G    + G+FP  Y+
Sbjct:   181 DFIQVLDNSDPNWWKGACHGQTGMFPRNYV 210

GO:0005070 "SH3/SH2 adaptor activity" evidence=IEA

GO:0005154 "epidermal growth factor receptor binding" evidence=IEA

GO:0005168 "neurotrophin TRKA receptor binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0042770 "signal transduction in response to DNA damage" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043408 "regulation of MAPK cascade" evidence=IEA

GO:0043560 "insulin receptor substrate binding" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0048646 "anatomical structure formation involved in morphogenesis" evidence=IEA

GO:0060670 "branching involved in labyrinthine layer morphogenesis" evidence=IEA

GO:0070436 "Grb2-EGFR complex" evidence=IEA

GO:0071479 "cellular response to ionizing radiation" evidence=IEA

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P62993	GRB2_HUMAN	No assigned EC number	0.6428	0.5478	0.9493	yes	N/A
P62994	GRB2_RAT	No assigned EC number	0.6428	0.5478	0.9493	yes	N/A
P29355	SEM5_CAEEL	No assigned EC number	0.5913	0.5478	0.9035	yes	N/A
Q66II3	GRB2_XENTR	No assigned EC number	0.5851	0.5664	0.9301	yes	N/A
Q60631	GRB2_MOUSE	No assigned EC number	0.6380	0.5478	0.9493	yes	N/A
Q07883	GRB2_CHICK	No assigned EC number	0.6285	0.5478	0.9493	yes	N/A
Q5R4J7	GRB2_PONAB	No assigned EC number	0.6428	0.5478	0.9493	yes	N/A
Q08012	DRK_DROME	No assigned EC number	0.8932	0.5478	0.9763	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	376
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	2e-51
cd09941	95	cd09941, SH2_Grb2_like, Src homology 2 domain foun	2e-51
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	2e-30
smart00252	84	smart00252, SH2, Src homology 2 domains	3e-30
smart00252	84	smart00252, SH2, Src homology 2 domains	3e-30
pfam00017	77	pfam00017, SH2, SH2 domain	2e-27
pfam00017	77	pfam00017, SH2, SH2 domain	2e-27
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	8e-27
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	2e-23
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	3e-23
cd00173	79	cd00173, SH2, Src homology 2 (SH2) domain	3e-23
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	5e-20
cd09935	94	cd09935, SH2_ABL, Src homology 2 (SH2) domain foun	5e-20
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	2e-19
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	7e-19
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	1e-18
cd10369	96	cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain	1e-18
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	1e-18
cd09933	101	cd09933, SH2_Src_family, Src homology 2 (SH2) doma	1e-18
smart00326	56	smart00326, SH3, Src homology 3 domains	6e-18
cd10354	77	cd10354, SH2_Cterm_RasGAP, C-terminal Src homology	1e-17
cd10354	77	cd10354, SH2_Cterm_RasGAP, C-terminal Src homology	1e-17
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	1e-17
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	4e-17
cd09943	93	cd09943, SH2_Nck_family, Src homology 2 (SH2) doma	4e-17
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	9e-17
cd09945	98	cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2	9e-17
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	9e-17
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	3e-16
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	5e-16
cd10361	90	cd10361, SH2_Fps_family, Src homology 2 (SH2) doma	5e-16
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	6e-16
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	9e-16
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	1e-15
cd10408	97	cd10408, SH2_Nck1, Src homology 2 (SH2) domain fou	1e-15
cd10408	97	cd10408, SH2_Nck1, Src homology 2 (SH2) domain fou	1e-15
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-15
cd10409	98	cd10409, SH2_Nck2, Src homology 2 (SH2) domain fou	2e-15
cd10409	98	cd10409, SH2_Nck2, Src homology 2 (SH2) domain fou	2e-15
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	2e-15
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	4e-15
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	8e-15
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	1e-14
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	3e-14
cd10347	81	cd10347, SH2_Nterm_shark_like, N-terminal Src homo	3e-14
cd10370	96	cd10370, SH2_Src_Src42, Src homology 2 (SH2) domai	6e-14
cd10370	96	cd10370, SH2_Src_Src42, Src homology 2 (SH2) domai	6e-14
smart00326	56	smart00326, SH3, Src homology 3 domains	7e-14
pfam00018	47	pfam00018, SH3_1, SH3 domain	9e-14
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	1e-13
cd09940	102	cd09940, SH2_Vav_family, Src homology 2 (SH2) doma	1e-13
cd10367	101	cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain	1e-13
cd10367	101	cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain	1e-13
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	2e-13
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	2e-13
cd09931	99	cd09931, SH2_C-SH2_SHP_like, C-terminal Src homolo	2e-13
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	2e-13
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	3e-13
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-13
cd10358	100	cd10358, SH2_PTK6_Brk, Src homology 2 domain found	4e-13
cd10358	100	cd10358, SH2_PTK6_Brk, Src homology 2 domain found	4e-13
cd10360	79	cd10360, SH2_Srm, Src homology 2 (SH2) domain foun	4e-13
cd10360	79	cd10360, SH2_Srm, Src homology 2 (SH2) domain foun	4e-13
cd10362	101	cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain	4e-13
cd10362	101	cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain	4e-13
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	4e-13
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	6e-13
cd10340	99	cd10340, SH2_N-SH2_SHP_like, N-terminal Src homolo	6e-13
cd10340	99	cd10340, SH2_N-SH2_SHP_like, N-terminal Src homolo	6e-13
cd10392	98	cd10392, SH2_SHF, Src homology 2 domain found in S	6e-13
cd10392	98	cd10392, SH2_SHF, Src homology 2 domain found in S	6e-13
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	7e-13
cd09930	104	cd09930, SH2_cSH2_p85_like, C-terminal Src homolog	7e-13
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	7e-13
cd09937	98	cd09937, SH2_csk_like, Src homology 2 (SH2) domain	7e-13
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	8e-13
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	8e-13
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	8e-13
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	1e-12
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	1e-12
cd10365	101	cd10365, SH2_Src_Src, Src homology 2 (SH2) domain	2e-12
cd10365	101	cd10365, SH2_Src_Src, Src homology 2 (SH2) domain	2e-12
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	3e-12
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	4e-12
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	5e-12
cd10390	98	cd10390, SH2_SHD, Src homology 2 domain found in S	5e-12
cd10390	98	cd10390, SH2_SHD, Src homology 2 domain found in S	5e-12
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	6e-12
cd10352	91	cd10352, SH2_a2chimerin_b2chimerin, Src homology 2	6e-12
pfam00018	47	pfam00018, SH3_1, SH3 domain	7e-12
cd10351	103	cd10351, SH2_SH2D4B, Src homology 2 domain found i	7e-12
cd10351	103	cd10351, SH2_SH2D4B, Src homology 2 domain found i	7e-12
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	9e-12
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	1e-11
cd09932	104	cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src	1e-11
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	1e-11
cd10391	98	cd10391, SH2_SHE, Src homology 2 domain found in S	1e-11
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	1e-11
cd09946	102	cd09946, SH2_HSH2_like, Src homology 2 domain foun	1e-11
cd09946	102	cd09946, SH2_HSH2_like, Src homology 2 domain foun	1e-11
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	1e-11
cd10418	101	cd10418, SH2_Src_Fyn_isoform_a_like, Src homology	2e-11
cd10418	101	cd10418, SH2_Src_Fyn_isoform_a_like, Src homology	2e-11
cd10355	92	cd10355, SH2_DAPP1_BAM32_like, Src homology 2 doma	2e-11
cd10355	92	cd10355, SH2_DAPP1_BAM32_like, Src homology 2 doma	2e-11
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	3e-11
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	3e-11
cd10337	136	cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in	3e-11
cd10337	136	cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in	3e-11
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	3e-11
cd09923	81	cd09923, SH2_SOCS_family, Src homology 2 (SH2) dom	3e-11
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	3e-11
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	4e-11
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	4e-11
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	5e-11
cd09925	104	cd09925, SH2_SHC, Src homology 2 (SH2) domain foun	5e-11
cd10366	101	cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain	5e-11
cd10366	101	cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain	5e-11
cd09944	108	cd09944, SH2_Grb7_family, Src homology 2 (SH2) dom	6e-11
cd09944	108	cd09944, SH2_Grb7_family, Src homology 2 (SH2) dom	6e-11
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	8e-11
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	9e-11
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	1e-10
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	1e-10
cd10344	104	cd10344, SH2_SLAP, Src homology 2 domain found in	1e-10
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	1e-10
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	2e-10
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	2e-10
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	2e-10
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	2e-10
cd10363	104	cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain	2e-10
cd10363	104	cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain	2e-10
cd10350	103	cd10350, SH2_SH2D4A, Src homology 2 domain found i	2e-10
cd10350	103	cd10350, SH2_SH2D4A, Src homology 2 domain found i	2e-10
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	3e-10
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	3e-10
cd09934	104	cd09934, SH2_Tec_family, Src homology 2 (SH2) doma	3e-10
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	3e-10
cd10389	97	cd10389, SH2_SHB, Src homology 2 domain found in S	3e-10
cd10389	97	cd10389, SH2_SHB, Src homology 2 domain found in S	3e-10
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	3e-10
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	4e-10
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	4e-10
cd10388	101	cd10388, SH2_SOCS7, Src homology 2 (SH2) domain fo	4e-10
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	4e-10
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	5e-10
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	5e-10
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	5e-10
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	8e-10
cd10356	113	cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domai	8e-10
cd10356	113	cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domai	8e-10
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	9e-10
cd09938	104	cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src	9e-10
cd09938	104	cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src	9e-10
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	1e-09
cd10343	103	cd10343, SH2_SHIP, Src homology 2 (SH2) domain fou	1e-09
cd10343	103	cd10343, SH2_SHIP, Src homology 2 (SH2) domain fou	1e-09
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	1e-09
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	1e-09
cd10402	105	cd10402, SH2_C-SH2_Zap70, C-terminal Src homology	1e-09
cd10402	105	cd10402, SH2_C-SH2_Zap70, C-terminal Src homology	1e-09
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	1e-09
cd10405	103	cd10405, SH2_Vav1, Src homology 2 (SH2) domain fou	1e-09
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	1e-09
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	2e-09
cd10353	103	cd10353, SH2_Nterm_RasGAP, N-terminal Src homology	2e-09
cd10353	103	cd10353, SH2_Nterm_RasGAP, N-terminal Src homology	2e-09
cd10368	101	cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain	2e-09
cd10368	101	cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain	2e-09
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	2e-09
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	2e-09
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	3e-09
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	3e-09
cd09926	106	cd09926, SH2_CRK_like, Src homology 2 domain found	3e-09
cd09926	106	cd09926, SH2_CRK_like, Src homology 2 domain found	3e-09
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	3e-09
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	4e-09
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	4e-09
cd09942	110	cd09942, SH2_nSH2_p85_like, N-terminal Src homolog	4e-09
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	5e-09
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	5e-09
cd11810	50	cd11810, SH3_RUSC1_like, Src homology 3 domain of	5e-09
cd10419	101	cd10419, SH2_Src_Fyn_isoform_b_like, Src homology	5e-09
cd10419	101	cd10419, SH2_Src_Fyn_isoform_b_like, Src homology	5e-09
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	5e-09
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	6e-09
cd10417	102	cd10417, SH2_SH2D7, Src homology 2 domain found in	6e-09
cd10417	102	cd10417, SH2_SH2D7, Src homology 2 domain found in	6e-09
cd10364	101	cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain	6e-09
cd10364	101	cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain	6e-09
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	7e-09
cd10349	77	cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain f	9e-09
cd10349	77	cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain f	9e-09
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	1e-08
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	1e-08
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	1e-08
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	1e-08
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	1e-08
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	1e-08
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	1e-08
cd10406	103	cd10406, SH2_Vav2, Src homology 2 (SH2) domain fou	1e-08
cd10406	103	cd10406, SH2_Vav2, Src homology 2 (SH2) domain fou	1e-08
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	1e-08
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	2e-08
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	2e-08
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	2e-08
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	2e-08
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	2e-08
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	2e-08
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	2e-08
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	3e-08
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	3e-08
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	3e-08
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	3e-08
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	3e-08
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	3e-08
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	3e-08
cd10341	99	cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src	3e-08
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	4e-08
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	4e-08
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	5e-08
cd11907	55	cd11907, SH3_TXK, Src Homology 3 domain of TXK, al	5e-08
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	5e-08
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	6e-08
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	6e-08
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	6e-08
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	6e-08
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	7e-08
cd12003	62	cd12003, SH3_EFS, Src homology 3 domain of CAS (Cr	7e-08
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	7e-08
cd12012	62	cd12012, SH3_RIM-BP_2, Second Src homology 3 domai	8e-08
cd10397	106	cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain	8e-08
cd10397	106	cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain	8e-08
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	9e-08
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	1e-07
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	1e-07
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	1e-07
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	1e-07
cd10371	100	cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain	1e-07
cd10371	100	cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain	1e-07
cd10399	106	cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain	1e-07
cd10399	106	cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain	1e-07
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	1e-07
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	1e-07
cd11895	58	cd11895, SH3_FCHSD1_2, Second Src Homology 3 domai	1e-07
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	2e-07
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	2e-07
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-07
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	2e-07
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	2e-07
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	2e-07
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	2e-07
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	2e-07
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	2e-07
cd12000	57	cd12000, SH3_CASS4, Src homology 3 domain of CAS (	2e-07
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	2e-07
cd10415	108	cd10415, SH2_Grb10, Src homology 2 (SH2) domain fo	2e-07
cd10415	108	cd10415, SH2_Grb10, Src homology 2 (SH2) domain fo	2e-07
cd09919	115	cd09919, SH2_STAT_family, Src homology 2 (SH2) dom	2e-07
cd09919	115	cd09919, SH2_STAT_family, Src homology 2 (SH2) dom	2e-07
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	2e-07
cd11851	62	cd11851, SH3_RIM-BP, Src homology 3 domains of Rab	2e-07
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	3e-07
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	3e-07
cd10383	103	cd10383, SH2_SOCS2, Src homology 2 (SH2) domain fo	3e-07
cd10383	103	cd10383, SH2_SOCS2, Src homology 2 (SH2) domain fo	3e-07
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	3e-07
cd10407	103	cd10407, SH2_Vav3, Src homology 2 (SH2) domain fou	3e-07
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	3e-07
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	3e-07
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	3e-07
cd10413	108	cd10413, SH2_Grb7, Src homology 2 (SH2) domain fou	3e-07
cd10413	108	cd10413, SH2_Grb7, Src homology 2 (SH2) domain fou	3e-07
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	3e-07
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	3e-07
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	3e-07
cd11973	73	cd11973, SH3_ASEF, Src homology 3 domain of APC-St	3e-07
cd11957	52	cd11957, SH3_RUSC2, Src homology 3 domain of RUN a	3e-07
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	4e-07
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	4e-07
cd12002	57	cd12002, SH3_NEDD9, Src homology 3 domain of CAS (	4e-07
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	4e-07
cd10398	106	cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain	4e-07
cd10398	106	cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain	4e-07
cd10348	86	cd10348, SH2_Cterm_shark_like, C-terminal Src homo	4e-07
cd10348	86	cd10348, SH2_Cterm_shark_like, C-terminal Src homo	4e-07
cd10414	108	cd10414, SH2_Grb14, Src homology 2 (SH2) domain fo	4e-07
cd10414	108	cd10414, SH2_Grb14, Src homology 2 (SH2) domain fo	4e-07
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	4e-07
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	5e-07
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	5e-07
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	6e-07
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	6e-07
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	6e-07
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	6e-07
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	6e-07
cd11965	57	cd11965, SH3_ASAP1, Src homology 3 domain of ArfGA	6e-07
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	7e-07
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	7e-07
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	7e-07
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	7e-07
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	8e-07
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	8e-07
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	9e-07
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	9e-07
cd12001	68	cd12001, SH3_BCAR1, Src homology 3 domain of the C	9e-07
cd12141	57	cd12141, SH3_DNMBP_C2, Second C-terminal Src homol	9e-07
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	1e-06
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	1e-06
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	1e-06
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	1e-06
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	1e-06
cd10357	87	cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domai	1e-06
cd10357	87	cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domai	1e-06
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	1e-06
cd11974	54	cd11974, SH3_ASEF2, Src homology 3 domain of APC-S	1e-06
cd11878	54	cd11878, SH3_Bem1p_1, First Src Homology 3 domain	1e-06
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	1e-06
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	1e-06
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	1e-06
cd11800	57	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src	1e-06
cd11800	57	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src	1e-06
cd10346	97	cd10346, SH2_SH2B_family, Src homology 2 (SH2) dom	1e-06
cd10346	97	cd10346, SH2_SH2B_family, Src homology 2 (SH2) dom	1e-06
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	2e-06
cd10396	108	cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain	2e-06
cd10396	108	cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain	2e-06
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	2e-06
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	2e-06
cd11932	57	cd11932, SH3_SH3RF2_2, Second Src Homology 3 domai	2e-06
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	2e-06
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	2e-06
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	2e-06
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	2e-06
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	3e-06
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	3e-06
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	3e-06
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	3e-06
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	3e-06
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	4e-06
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	4e-06
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	4e-06
cd10384	101	cd10384, SH2_SOCS3, Src homology 2 (SH2) domain fo	4e-06
cd10384	101	cd10384, SH2_SOCS3, Src homology 2 (SH2) domain fo	4e-06
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	4e-06
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	4e-06
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	4e-06
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	4e-06
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	4e-06
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	5e-06
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	5e-06
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	5e-06
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	5e-06
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	5e-06
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	5e-06
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	5e-06
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	5e-06
cd10345	95	cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src	5e-06
cd10345	95	cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src	5e-06
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	5e-06
cd11878	54	cd11878, SH3_Bem1p_1, First Src Homology 3 domain	6e-06
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	6e-06
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	6e-06
cd10400	103	cd10400, SH2_SAP1a, Src homology 2 (SH2) domain fo	6e-06
cd10400	103	cd10400, SH2_SAP1a, Src homology 2 (SH2) domain fo	6e-06
cd12000	57	cd12000, SH3_CASS4, Src homology 3 domain of CAS (	7e-06
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	7e-06
cd10401	99	cd10401, SH2_C-SH2_Syk_like, C-terminal Src homolo	7e-06
cd10401	99	cd10401, SH2_C-SH2_Syk_like, C-terminal Src homolo	7e-06
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	7e-06
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	8e-06
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	8e-06
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	8e-06
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	9e-06
cd11922	58	cd11922, SH3_Sorbs1_2, Second Src Homology 3 domai	9e-06
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	1e-05
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	1e-05
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	1e-05
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	1e-05
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	1e-05
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	1e-05
cd11912	55	cd11912, SH3_Bzz1_1, First Src Homology 3 domain o	1e-05
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	1e-05
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	1e-05
cd11897	55	cd11897, SH3_SNX18, Src Homology 3 domain of Sorti	1e-05
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	1e-05
cd10387	100	cd10387, SH2_SOCS6, Src homology 2 (SH2) domain fo	1e-05
cd10387	100	cd10387, SH2_SOCS6, Src homology 2 (SH2) domain fo	1e-05
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	1e-05
cd10416	102	cd10416, SH2_SH2D2A, Src homology 2 domain found i	1e-05
cd10416	102	cd10416, SH2_SH2D2A, Src homology 2 domain found i	1e-05
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	2e-05
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	2e-05
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	2e-05
cd11851	62	cd11851, SH3_RIM-BP, Src homology 3 domains of Rab	2e-05
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	2e-05
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	2e-05
cd11958	51	cd11958, SH3_RUSC1, Src homology 3 domain of RUN a	2e-05
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	2e-05
cd10718	88	cd10718, SH2_CIS, Src homology 2 (SH2) domain foun	2e-05
cd10718	88	cd10718, SH2_CIS, Src homology 2 (SH2) domain foun	2e-05
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	2e-05
cd11765	51	cd11765, SH3_Nck_1, First Src Homology 3 domain of	2e-05
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	3e-05
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	3e-05
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	3e-05
cd12003	62	cd12003, SH3_EFS, Src homology 3 domain of CAS (Cr	3e-05
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	3e-05
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	3e-05
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	3e-05
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	3e-05
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	3e-05
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	3e-05
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	3e-05
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	4e-05
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	4e-05
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	4e-05
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	4e-05
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	4e-05
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	4e-05
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	5e-05
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	5e-05
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	5e-05
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	5e-05
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	5e-05
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	5e-05
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	6e-05
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	6e-05
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	6e-05
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	6e-05
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	6e-05
cd09927	116	cd09927, SH2_Tensin_like, Src homology 2 domain fo	6e-05
cd11953	57	cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of	6e-05
cd11879	56	cd11879, SH3_Bem1p_2, Second Src Homology 3 domain	6e-05
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	6e-05
cd11908	56	cd11908, SH3_ITK, Src Homology 3 domain of Interle	6e-05
cd11925	57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	6e-05
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	7e-05
cd11885	55	cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 d	7e-05
cd11885	55	cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 d	8e-05
cd10411	97	cd10411, SH2_SH2B2, Src homology 2 (SH2) domain fo	8e-05
cd10411	97	cd10411, SH2_SH2B2, Src homology 2 (SH2) domain fo	8e-05
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	8e-05
cd12034	61	cd12034, SH3_MPP4, Src Homology 3 domain of Membra	8e-05
cd11918	58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	9e-05
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	9e-05
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	9e-05
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	1e-04
cd11810	50	cd11810, SH3_RUSC1_like, Src homology 3 domain of	1e-04
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	1e-04
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	1e-04
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	1e-04
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	1e-04
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	1e-04
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	1e-04
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	1e-04
cd12036	63	cd12036, SH3_MPP5, Src Homology 3 domain of Membra	1e-04
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	1e-04
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	1e-04
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	1e-04
cd11931	55	cd11931, SH3_SH3RF3_2, Second Src Homology 3 domai	1e-04
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	2e-04
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	2e-04
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	2e-04
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	2e-04
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	2e-04
cd11912	55	cd11912, SH3_Bzz1_1, First Src Homology 3 domain o	2e-04
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	2e-04
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	2e-04
cd11835	54	cd11835, SH3_ARHGAP32_33, Src homology 3 domain of	2e-04
cd11764	54	cd11764, SH3_Eps8, Src Homology 3 domain of Epider	2e-04
cd12039	62	cd12039, SH3_MPP3, Src Homology 3 domain of Membra	2e-04
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	2e-04
cd12012	62	cd12012, SH3_RIM-BP_2, Second Src homology 3 domai	3e-04
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	3e-04
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	3e-04
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	3e-04
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	3e-04
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	3e-04
cd11850	56	cd11850, SH3_Abl, Src homology 3 domain of the Pro	3e-04
cd12033	61	cd12033, SH3_MPP7, Src Homology 3 domain of Membra	3e-04
cd11911	55	cd11911, SH3_CIP4-like, Src Homology 3 domain of C	3e-04
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	4e-04
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	4e-04
cd11900	59	cd11900, SH3_Nck1_1, First Src Homology 3 domain o	4e-04
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	4e-04
cd11865	55	cd11865, SH3_Nbp2-like, Src Homology 3 domain of S	4e-04
cd11795	54	cd11795, SH3_DNMBP_N2, Second N-terminal Src homol	4e-04
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	5e-04
cd12001	68	cd12001, SH3_BCAR1, Src homology 3 domain of the C	5e-04
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	5e-04
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	5e-04
cd11757	52	cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3	5e-04
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	6e-04
cd11958	51	cd11958, SH3_RUSC1, Src homology 3 domain of RUN a	6e-04
cd12011	55	cd12011, SH3_SLAP2, Src homology 3 domain of Src-L	6e-04
cd12015	53	cd12015, SH3_Tks_1, First Src homology 3 domain of	6e-04
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	6e-04
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	6e-04
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	7e-04
cd12064	56	cd12064, SH3_GRAF, Src Homology 3 domain of GTPase	7e-04
cd11811	59	cd11811, SH3_CHK, Src Homology 3 domain of CSK hom	7e-04
cd10342	103	cd10342, SH2_SAP1, Src homology 2 (SH2) domain fou	7e-04
cd10342	103	cd10342, SH2_SAP1, Src homology 2 (SH2) domain fou	7e-04
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	8e-04
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	8e-04
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	8e-04
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	9e-04
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	0.001
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	0.001
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	0.001
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	0.001
cd11953	57	cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of	0.001
cd11941	57	cd11941, SH3_ARHGEF37_C2, Second C-terminal Src ho	0.001
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	0.001
cd11899	58	cd11899, SH3_Nck2_1, First Src Homology 3 domain o	0.001
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	0.001
smart00326	56	smart00326, SH3, Src homology 3 domains	0.002
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	0.002
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	0.002
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	0.002
cd11765	51	cd11765, SH3_Nck_1, First Src Homology 3 domain of	0.002
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	0.002
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	0.002
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	0.002
cd12065	54	cd12065, SH3_GRAF2, Src Homology 3 domain of GTPas	0.002
cd12014	62	cd12014, SH3_RIM-BP_1, First Src homology 3 domain	0.002
cd11788	59	cd11788, SH3_RasGAP, Src Homology 3 domain of Ras	0.002
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	0.002
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	0.002
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	0.002
cd10410	97	cd10410, SH2_SH2B1, Src homology 2 (SH2) domain fo	0.002
cd10410	97	cd10410, SH2_SH2B1, Src homology 2 (SH2) domain fo	0.002
cd11802	52	cd11802, SH3_Endophilin_B, Src homology 3 domain o	0.002
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	0.003
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	0.003
cd11907	55	cd11907, SH3_TXK, Src Homology 3 domain of TXK, al	0.003
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	0.003
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	0.003
cd09918	85	cd09918, SH2_Nterm_SPT6_like, N-terminal Src homol	0.003
cd09918	85	cd09918, SH2_Nterm_SPT6_like, N-terminal Src homol	0.003
cd12066	55	cd12066, SH3_GRAF3, Src Homology 3 domain of GTPas	0.003
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	0.004
cd11957	52	cd11957, SH3_RUSC2, Src homology 3 domain of RUN a	0.004
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	0.004
cd12033	61	cd12033, SH3_MPP7, Src Homology 3 domain of Membra	0.004
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	0.004
cd11871	54	cd11871, SH3_p67phox_N, N-terminal (or first) Src	0.004
cd11846	55	cd11846, SH3_Srms, Src homology 3 domain of Srms P	0.004
cd10412	97	cd10412, SH2_SH2B3, Src homology 2 (SH2) domain fo	0.004
cd10412	97	cd10412, SH2_SH2B3, Src homology 2 (SH2) domain fo	0.004
cd11943	55	cd11943, SH3_JIP1, Src homology 3 domain of JNK-in	0.004

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score =  166 bits (422), Expect = 2e-51
 Identities = 67/95 (70%), Positives = 81/95 (85%), Gaps = 1/95 (1%)

Query: 56  KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           K H W++G+I+RA+AE +L N + +GAFLIR SESSPGDFSLSVK  + VQHFKVLRD +
Sbjct: 1   KPHPWFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLRDGA 60

Query: 115 GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 149
           GK+FLWVVKFNSLNELV+YHRT SVSR+Q + LRD
Sbjct: 61  GKYFLWVVKFNSLNELVDYHRTTSVSRNQQIFLRD 95

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|199828 cd09941, SH2_Grb2_like, Src homology 2 domain found in Growth factor receptor-bound protein 2 (Grb2) and similar proteins

 Score =  166 bits (422), Expect = 2e-51
 Identities = 67/95 (70%), Positives = 81/95 (85%), Gaps = 1/95 (1%)

Query: 235 KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           K H W++G+I+RA+AE +L N + +GAFLIR SESSPGDFSLSVK  + VQHFKVLRD +
Sbjct: 1   KPHPWFHGKISRAEAEEILMNQRPDGAFLIRESESSPGDFSLSVKFGNDVQHFKVLRDGA 60

Query: 294 GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 328
           GK+FLWVVKFNSLNELV+YHRT SVSR+Q + LRD
Sbjct: 61  GKYFLWVVKFNSLNELVDYHRTTSVSRNQQIFLRD 95

The adaptor proteins here include homologs Grb2 in humans, Sex muscle abnormal protein 5 (Sem-5) in Caenorhabditis elegans, and Downstream of receptor kinase (drk) in Drosophila melanogaster. They are composed of one SH2 and two SH3 domains. Grb2/Sem-5/drk regulates the Ras pathway by linking the tyrosine kinases to the Ras guanine nucleotide releasing protein Sos, which converts Ras to the active GTP-bound state. The SH2 domain of Grb2/Sem-5/drk binds class II phosphotyrosyl peptides while its SH3 domain binds to Sos and Sos-derived, proline-rich peptides. Besides it function in Ras signaling, Grb2 is also thought to play a role in apoptosis. Unlike most SH2 structures in which the peptide binds in an extended conformation (such that the +3 peptide residue occupies a hydrophobic pocket in the protein, conferring a modest degree of selectivity), Grb2 forms several hydrogen bonds via main chain atoms with the side chain of +2 Asn. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score =  110 bits (276), Expect = 2e-30
 Identities = 42/52 (80%), Positives = 47/52 (90%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          EA+AKHDF ATAEDELSF+K  +LK+LNMEDD NWY+AELDGKEGLIP NYI
Sbjct: 1  EAVAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score =  110 bits (278), Expect = 3e-30
 Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 58  HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
             WY+G I+R +AE+LL N+ +G FL+R SESSPGD+ LSV+    V+H+++ R+  GKF
Sbjct: 1   QPWYHGFISREEAEKLLKNEGDGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDGKF 60

Query: 118 FLW-VVKFNSLNELVEYHRTAS 138
           +L    KF SL ELVE+++  S
Sbjct: 61  YLEGGRKFPSLVELVEHYQKNS 82

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|214585 smart00252, SH2, Src homology 2 domains

 Score =  110 bits (278), Expect = 3e-30
 Identities = 40/82 (48%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
             WY+G I+R +AE+LL N+ +G FL+R SESSPGD+ LSV+    V+H+++ R+  GKF
Sbjct: 1   QPWYHGFISREEAEKLLKNEGDGDFLVRDSESSPGDYVLSVRVKGKVKHYRIRRNEDGKF 60

Query: 297 FLW-VVKFNSLNELVEYHRTAS 317
           +L    KF SL ELVE+++  S
Sbjct: 61  YLEGGRKFPSLVELVEHYQKNS 82

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae. Length = 84

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score =  103 bits (258), Expect = 2e-27
 Identities = 37/77 (48%), Positives = 56/77 (72%), Gaps = 2/77 (2%)

Query: 60  WYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           WY+G+I+R +AERLL N K +G FL+R SES PGD++LSV+    V+H+++    +G ++
Sbjct: 1   WYHGKISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQSLDNGGYY 60

Query: 119 L-WVVKFNSLNELVEYH 134
           +   V FNSL ELVE++
Sbjct: 61  ISGGVTFNSLPELVEHY 77

Length = 77

>gnl|CDD|215658 pfam00017, SH2, SH2 domain

 Score =  103 bits (258), Expect = 2e-27
 Identities = 37/77 (48%), Positives = 56/77 (72%), Gaps = 2/77 (2%)

Query: 239 WYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           WY+G+I+R +AERLL N K +G FL+R SES PGD++LSV+    V+H+++    +G ++
Sbjct: 1   WYHGKISREEAERLLLNPKPDGTFLVRESESKPGDYTLSVRDDGRVKHYRIQSLDNGGYY 60

Query: 298 L-WVVKFNSLNELVEYH 313
           +   V FNSL ELVE++
Sbjct: 61  ISGGVTFNSLPELVEHY 77

Length = 77

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score =  100 bits (251), Expect = 8e-27
 Identities = 36/51 (70%), Positives = 40/51 (78%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            VQALYDF PQEPGELEFRRGD+ITV D SD  WW GE+  R G+FPA Y+
Sbjct: 1   RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYV 51

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 91.6 bits (227), Expect = 2e-23
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
          MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK
Sbjct: 1  MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 91.7 bits (228), Expect = 3e-23
 Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 59  DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLRDSSGKF 117
            W++G I+R +AERLL  K +G FL+R S S PGD+ LSV+  DG V+H+ + R+  G +
Sbjct: 1   PWFHGSISREEAERLLRGKPDGTFLVRESSSEPGDYVLSVRSGDGKVKHYLIERNEGGYY 60

Query: 118 FL--WVVKFNSLNELVEYH 134
            L      F SL ELVE++
Sbjct: 61  LLGGSGRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|198173 cd00173, SH2, Src homology 2 (SH2) domain

 Score = 91.7 bits (228), Expect = 3e-23
 Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 238 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLRDSSGKF 296
            W++G I+R +AERLL  K +G FL+R S S PGD+ LSV+  DG V+H+ + R+  G +
Sbjct: 1   PWFHGSISREEAERLLRGKPDGTFLVRESSSEPGDYVLSVRSGDGKVKHYLIERNEGGYY 60

Query: 297 FL--WVVKFNSLNELVEYH 313
            L      F SL ELVE++
Sbjct: 61  LLGGSGRTFPSLPELVEHY 79

In general, SH2 domains are involved in signal transduction; they bind pTyr-containing polypeptide ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. They are present in a wide array of proteins including: adaptor proteins (Nck1, Crk, Grb2), scaffolds (Slp76, Shc, Dapp1), kinases (Src, Syk, Fps, Tec), phosphatases (Shp-1, Shp-2), transcription factors (STAT1), Ras signaling molecules (Ras-Gap), ubiquitination factors (c-Cbl), cytoskeleton regulators (Tensin), signal regulators (SAP), and phospholipid second messengers (PLCgamma), amongst others. Length = 79

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 83.6 bits (207), Expect = 5e-20
 Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 58  HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           H WY+G I+R  AE LLS+   G+FL+R SESSPG +S+S++    V H+++  DS GK 
Sbjct: 3   HSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISEDSDGKV 62

Query: 118 FLWV-VKFNSLNELVEYHRTAS 138
           ++    +FN+L ELV +H   +
Sbjct: 63  YVTQEHRFNTLAELVHHHSKNA 84

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|198189 cd09935, SH2_ABL, Src homology 2 (SH2) domain found in Abelson murine lymphosarcoma virus (ABL) proteins

 Score = 83.6 bits (207), Expect = 5e-20
 Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           H WY+G I+R  AE LLS+   G+FL+R SESSPG +S+S++    V H+++  DS GK 
Sbjct: 3   HSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQYSISLRYDGRVYHYRISEDSDGKV 62

Query: 297 FLWV-VKFNSLNELVEYHRTAS 317
           ++    +FN+L ELV +H   +
Sbjct: 63  YVTQEHRFNTLAELVHHHSKNA 84

ABL-family proteins are highly conserved tyrosine kinases. Each ABL protein contains an SH3-SH2-TK (Src homology 3-Src homology 2-tyrosine kinase) domain cassette, which confers autoregulated kinase activity and is common among nonreceptor tyrosine kinases. Several types of posttranslational modifications control ABL catalytic activity, subcellular localization, and stability, with consequences for both cytoplasmic and nuclear ABL functions. Binding partners provide additional regulation of ABL catalytic activity, substrate specificity, and downstream signaling. By combining this cassette with actin-binding and -bundling domain, ABL proteins are capable of connecting phosphoregulation with actin-filament reorganization. Vertebrate paralogs, ABL1 and ABL2, have evolved to perform specialized functions. ABL1 includes nuclear localization signals and a DNA binding domain which is used to mediate DNA damage-repair functions, while ABL2 has additional binding capacity for actin and for microtubules to enhance its cytoskeletal remodeling functions. SH2 is involved in several autoinhibitory mechanism that constrain the enzymatic activity of the ABL-family kinases. In one mechanism SH2 and SH3 cradle the kinase domain while a cap sequence stabilizes the inactive conformation resulting in a locked inactive state. Another involves phosphatidylinositol 4,5-bisphosphate (PIP2) which binds the SH2 domain through residues normally required for phosphotyrosine binding in the linker segment between the SH2 and kinase domains. The SH2 domain contributes to ABL catalytic activity and target site specificity. It is thought that the ABL catalytic site and SH2 pocket have coevolved to recognize the same sequences. Recent work now supports a hierarchical processivity model in which the substrate target site most compatible with ABL kinase domain preferences is phosphorylated with greatest efficiency. If this site is compatible with the ABL SH2 domain specificity, it will then reposition and dock in the SH2 pocket. This mechanism also explains how ABL kinases phosphorylates poor targets on the same substrate if they are properly positioned and how relatively poor substrate proteins might be recruited to ABL through a complex with strong substrates that can also dock with the SH2 pocket. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 94

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 80.6 bits (199), Expect = 2e-19
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          EA+A + F AT  DEL F+K  +LKILNMEDD NWY+AEL G+EG IP NYI++
Sbjct: 1  EAVALYSFQATESDELPFQKGDILKILNMEDDQNWYKAELQGREGYIPKNYIKV 54

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 79.0 bits (196), Expect = 7e-19
 Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATY 205
            +ALYD+  Q+  EL F++GD+ITV ++ D  WW GE+ G R+GLFPA Y
Sbjct: 2   ARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 60  WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           W++G I RADAE+  L S    GAFLIR SES  G+FSLSV     V+H+++ R   G F
Sbjct: 5   WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRLDEGGF 64

Query: 118 FLWVVK-FNSLNELVEYHRTAS 138
           FL   K F++LNE V Y+ T S
Sbjct: 65  FLTRRKTFSTLNEFVNYYTTTS 86

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|199831 cd10369, SH2_Src_Frk, Src homology 2 (SH2) domain found in the Fyn-related kinase (Frk)

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 239 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           W++G I RADAE+  L S    GAFLIR SES  G+FSLSV     V+H+++ R   G F
Sbjct: 5   WFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGEFSLSVLDGGVVKHYRIRRLDEGGF 64

Query: 297 FLWVVK-FNSLNELVEYHRTAS 317
           FL   K F++LNE V Y+ T S
Sbjct: 65  FLTRRKTFSTLNEFVNYYTTTS 86

Frk is a member of the Src non-receptor type tyrosine kinase family of proteins. The Frk subfamily is composed of Frk/Rak and Iyk/Bsk/Gst. It is expressed primarily epithelial cells. Frk is a nuclear protein and may function during G1 and S phase of the cell cycle and suppress growth. Unlike the other Src members it lacks a glycine at position 2 of SH4 which is important for addition of a myristic acid moiety that is involved in targeting Src PTKs to cellular membranes. FRK and SHB exert similar effects when overexpressed in rat phaeochromocytoma (PC12) and beta-cells, where both induce PC12 cell differentiation and beta-cell proliferation. Under conditions that cause beta-cell degeneration these proteins augment beta-cell apoptosis. The FRK-SHB responses involve FAK and insulin receptor substrates (IRS) -1 and -2. Frk has been demonstrated to interact with retinoblastoma protein. Frk regulates PTEN protein stability by phosphorylating PTEN, which in turn prevents PTEN degradation. Frk also plays a role in regulation of embryonal pancreatic beta cell formation. Frk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its activation loop. The tryosine involved is at the same site as the tyrosine involved in the autophosphorylation of Src. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 79.5 bits (197), Expect = 1e-18
 Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 59  DWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVL 110
           +W++G+I R DAE+LL    N   G FLIR SE++PG +SLSV+  D      V+H+++ 
Sbjct: 4   EWFFGKIKRKDAEKLLLAPGNPR-GTFLIRESETTPGAYSLSVRDGDDARGDTVKHYRIR 62

Query: 111 R-DSSGKFFLWVVKFNSLNELVEYHRTAS 138
           + D+ G +      F +L ELV+++   +
Sbjct: 63  KLDNGGYYITTRATFPTLQELVQHYSKDA 91

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|199827 cd09933, SH2_Src_family, Src homology 2 (SH2) domain found in the Src family of non-receptor tyrosine kinases

 Score = 79.5 bits (197), Expect = 1e-18
 Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 10/89 (11%)

Query: 238 DWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVL 289
           +W++G+I R DAE+LL    N   G FLIR SE++PG +SLSV+  D      V+H+++ 
Sbjct: 4   EWFFGKIKRKDAEKLLLAPGNPR-GTFLIRESETTPGAYSLSVRDGDDARGDTVKHYRIR 62

Query: 290 R-DSSGKFFLWVVKFNSLNELVEYHRTAS 317
           + D+ G +      F +L ELV+++   +
Sbjct: 63  KLDNGGYYITTRATFPTLQELVQHYSKDA 91

The Src family kinases are nonreceptor tyrosine kinases that have been implicated in pathways regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. It is thought that transforming ability of Src is linked to its ability to activate key signaling molecules in these pathways, rather than through direct activity. As such blocking Src activation has been a target for drug companies. Src family members can be divided into 3 groups based on their expression pattern: 1) Src, Fyn, and Yes; 2) Blk, Fgr, Hck, Lck, and Lyn; and 3) Frk-related kinases Frk/Rak and Iyk/Bsk Of these, cellular c-Src is the best studied and most frequently implicated in oncogenesis. The c-Src contains five distinct regions: a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Src exists in both active and inactive conformations. Negative regulation occurs through phosphorylation of Tyr, resulting in an intramolecular association between phosphorylated Tyr and the SH2 domain of SRC, which locks the protein in a closed conformation. Further stabilization of the inactive state occurs through interactions between the SH3 domain and a proline-rich stretch of residues within the kinase domain. Conversely, dephosphorylation of Tyr allows SRC to assume an open conformation. Full activity requires additional autophosphorylation of a Tyr residue within the catalytic domain. Loss of the negative-regulatory C-terminal segment has been shown to result in increased activity and transforming potential. Phosphorylation of the C-terminal Tyr residue by C-terminal Src kinase (Csk) and Csk homology kinase results in increased intramolecular interactions and consequent Src inactivation. Specific phosphatases, protein tyrosine phosphatase a (PTPa) and the SH-containing phosphatases SHP1/SHP2, have also been shown to take a part in Src activation. Src is also activated by direct binding of focal adhesion kinase (Fak) and Crk-associated substrate (Cas) to the SH2 domain. SRC activity can also be regulated by numerous receptor tyrosine kinases (RTKs), such as Her2, epidermal growth factor receptor (EGFR), fibroblast growth factor receptor, platelet-derived growth factor receptor (PDGFR), and vascular endothelial growth factor receptor (VEGFR). In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 76.4 bits (189), Expect = 6e-18
 Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKGLFPATYI 206
           E   V+ALYD+T Q+P EL F++GD+ITV ++SD  WW G +G  ++GLFP+ Y+
Sbjct: 1   EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYV 55

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 76.7 bits (189), Expect = 1e-17
 Identities = 25/76 (32%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 60  WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++G+I+R +A  +L      G+FL+R S+++PGD+SLS + ++G++HFK++   + +F 
Sbjct: 2   WFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHFKIIPTGNNQFM 61

Query: 119 LWVVKFNSLNELVEYH 134
           +    F+SL+++++ +
Sbjct: 62  MGGRYFSSLDDVIDRY 77

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|198217 cd10354, SH2_Cterm_RasGAP, C-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 76.7 bits (189), Expect = 1e-17
 Identities = 25/76 (32%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 239 WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           W++G+I+R +A  +L      G+FL+R S+++PGD+SLS + ++G++HFK++   + +F 
Sbjct: 2   WFHGKISREEAYNMLVKVGGPGSFLVRESDNTPGDYSLSFRVNEGIKHFKIIPTGNNQFM 61

Query: 298 LWVVKFNSLNELVEYH 313
           +    F+SL+++++ +
Sbjct: 62  MGGRYFSSLDDVIDRY 77

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           VQAL+DF PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+
Sbjct: 2   VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYV 51

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 75.6 bits (186), Expect = 4e-17
 Identities = 40/90 (44%), Positives = 58/90 (64%), Gaps = 2/90 (2%)

Query: 60  WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           WYYGRITR  AE LL+   HEG FLIR SES+PGD+S+S+K     +HFKV       + 
Sbjct: 3   WYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQVV-DNVYC 61

Query: 119 LWVVKFNSLNELVEYHRTASVSRSQDVKLR 148
           +   KF++++ELVE+++ A +  S+  +  
Sbjct: 62  IGQRKFHTMDELVEHYKKAPIFTSEQGEKL 91

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|198196 cd09943, SH2_Nck_family, Src homology 2 (SH2) domain found in the Nck family

 Score = 75.6 bits (186), Expect = 4e-17
 Identities = 40/90 (44%), Positives = 58/90 (64%), Gaps = 2/90 (2%)

Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           WYYGRITR  AE LL+   HEG FLIR SES+PGD+S+S+K     +HFKV       + 
Sbjct: 3   WYYGRITRHQAETLLNEHGHEGDFLIRDSESNPGDYSVSLKAPGRNKHFKVQVV-DNVYC 61

Query: 298 LWVVKFNSLNELVEYHRTASVSRSQDVKLR 327
           +   KF++++ELVE+++ A +  S+  +  
Sbjct: 62  IGQRKFHTMDELVEHYKKAPIFTSEQGEKL 91

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 93

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score = 74.8 bits (184), Expect = 9e-17
 Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G ITR +AE LL    EG++L+R SES+  D+SLS+K + G  H ++ R+ +G++ L
Sbjct: 3   WYHGAITRIEAESLLRPCKEGSYLVRNSESTKQDYSLSLKSAKGFMHMRIQRNETGQYIL 62

Query: 120 --WVVKFNSLNELVEYHRTA 137
             +   F ++ E++ ++   
Sbjct: 63  GQFSRPFETIPEMIRHYCLN 82

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198198 cd09945, SH2_SHB_SHD_SHE_SHF_like, Src homology 2 domain found in SH2 domain-containing adapter proteins B, D, E, and F (SHB, SHD, SHE, SHF)

 Score = 74.8 bits (184), Expect = 9e-17
 Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY+G ITR +AE LL    EG++L+R SES+  D+SLS+K + G  H ++ R+ +G++ L
Sbjct: 3   WYHGAITRIEAESLLRPCKEGSYLVRNSESTKQDYSLSLKSAKGFMHMRIQRNETGQYIL 62

Query: 299 --WVVKFNSLNELVEYHRTA 316
             +   F ++ E++ ++   
Sbjct: 63  GQFSRPFETIPEMIRHYCLN 82

SHB, SHD, SHE, and SHF are SH2 domain-containing proteins that play various roles throughout the cell. SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. SHE is expressed in heart, lung, brain, and skeletal muscle, while expression of SHD is restricted to the brain. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 73.3 bits (180), Expect = 9e-17
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           VQA YDF+ ++P +L FRRGD+I V D  D +WW G I  R G FP  Y+
Sbjct: 2   VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRISGRVGFFPRNYV 51

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 71.6 bits (176), Expect = 3e-16
 Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 25/74 (33%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A +DF      EL F++G ++                          +LNMEDD NWY+A
Sbjct: 4   AKHDFKATAEDELSFKKGSILK-------------------------VLNMEDDPNWYKA 38

Query: 219 ELDGKEGLIPSNYI 232
           ELDGKEGLIP NYI
Sbjct: 39  ELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 72.2 bits (178), Expect = 5e-16
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGD---FSLSVKCSDGVQHFKVL 110
           +++N  +Y+G + R DAE LL  K++G FL+R +E   G      LSV+    ++HF + 
Sbjct: 2   DLENEPYYHGLLPREDAEELL--KNDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFVIN 59

Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRT 136
           RD  GK+++    F S++EL+ Y++ 
Sbjct: 60  RDDGGKYYIEGKSFKSISELINYYQK 85

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|198224 cd10361, SH2_Fps_family, Src homology 2 (SH2) domain found in feline sarcoma, Fujinami poultry sarcoma, and fes-related (Fes/Fps/Fer) proteins

 Score = 72.2 bits (178), Expect = 5e-16
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGD---FSLSVKCSDGVQHFKVL 289
           +++N  +Y+G + R DAE LL  K++G FL+R +E   G      LSV+    ++HF + 
Sbjct: 2   DLENEPYYHGLLPREDAEELL--KNDGDFLVRKTEPKGGGKRKLVLSVRWDGKIRHFVIN 59

Query: 290 RDSSGKFFLWVVKFNSLNELVEYHRT 315
           RD  GK+++    F S++EL+ Y++ 
Sbjct: 60  RDDGGKYYIEGKSFKSISELINYYQK 85

The Fps family consists of members Fps/Fes and Fer/Flk/Tyk3. They are cytoplasmic protein-tyrosine kinases implicated in signaling downstream from cytokines, growth factors and immune receptors. Fes/Fps/Fer contains three coiled-coil regions, an SH2 (Src-homology-2) and a TK (tyrosine kinase catalytic) domain signature. Members here include: Fps/Fes, Fer, Kin-31, and In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 90

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 71.0 bits (174), Expect = 6e-16
 Identities = 28/54 (51%), Positives = 41/54 (75%), Gaps = 2/54 (3%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          EA  K DF A+ EDELSF+K  VLKIL+ +D   W++AEL+G+EG +P N++++
Sbjct: 1  EARGKFDFTASGEDELSFKKGDVLKILSSDDI--WFKAELNGEEGYVPKNFVDI 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 70.5 bits (173), Expect = 9e-16
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           V ALY F  Q+P +L F+ GD ITV  R+D    WW G +  R G+FPA Y+
Sbjct: 2   VTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 22/49 (44%), Positives = 38/49 (77%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALY++  +EPG+L F++GD+I +  R D++W+HGE   ++G FPA+Y+
Sbjct: 3   KALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYV 51

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198271 cd10408, SH2_Nck1, Src homology 2 (SH2) domain found in Nck

 Score = 71.6 bits (175), Expect = 1e-15
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 4/86 (4%)

Query: 60  WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 117
           WYYG++TR  AE  L+ + +EG FLIR SESSP DFS+S+K     +HFKV L++    +
Sbjct: 3   WYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKECV--Y 60

Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQ 143
            +   KF+S+ ELVE+++ A +  S+
Sbjct: 61  CIGQRKFSSMEELVEHYKKAPIFTSE 86

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198271 cd10408, SH2_Nck1, Src homology 2 (SH2) domain found in Nck

 Score = 71.6 bits (175), Expect = 1e-15
 Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 4/86 (4%)

Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 296
           WYYG++TR  AE  L+ + +EG FLIR SESSP DFS+S+K     +HFKV L++    +
Sbjct: 3   WYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKECV--Y 60

Query: 297 FLWVVKFNSLNELVEYHRTASVSRSQ 322
            +   KF+S+ ELVE+++ A +  S+
Sbjct: 61  CIGQRKFSSMEELVEHYKKAPIFTSE 86

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 22/49 (44%), Positives = 35/49 (71%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALYDF P+  GEL F+ GD+IT+T++ D++W+ G +  + G FP  Y+
Sbjct: 4   RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMVNGQSGFFPVNYV 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198272 cd10409, SH2_Nck2, Src homology 2 (SH2) domain found in Nck

 Score = 71.2 bits (174), Expect = 2e-15
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 59  DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           +WYYG +TR  AE  L+ +  EG FLIR SESSP DFS+S+K     +HFKV +     +
Sbjct: 2   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKV-QLVDNVY 60

Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQ 143
            +   +FNS++ELVE+++ A +  S+
Sbjct: 61  CIGQRRFNSMDELVEHYKKAPIFTSE 86

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198272 cd10409, SH2_Nck2, Src homology 2 (SH2) domain found in Nck

 Score = 71.2 bits (174), Expect = 2e-15
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 238 DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           +WYYG +TR  AE  L+ +  EG FLIR SESSP DFS+S+K     +HFKV +     +
Sbjct: 2   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKAVGKNKHFKV-QLVDNVY 60

Query: 297 FLWVVKFNSLNELVEYHRTASVSRSQ 322
            +   +FNS++ELVE+++ A +  S+
Sbjct: 61  CIGQRRFNSMDELVEHYKKAPIFTSE 86

Nck proteins are adaptors that modulate actin cytoskeleton dynamics by linking proline-rich effector molecules to tyrosine kinases or phosphorylated signaling intermediates. There are two members known in this family: Nck1 (Nckalpha) and Nck2 (Nckbeta and Growth factor receptor-bound protein 4 (Grb4)). They are characterized by having 3 SH3 domains and a C-terminal SH2 domain. Nck1 and Nck2 have overlapping functions as determined by gene knockouts. Both bind receptor tyrosine kinases and other tyrosine-phosphorylated proteins through their SH2 domains. In addition they also bind distinct targets. Neuronal signaling proteins: EphrinB1, EphrinB2, and Disabled-1 (Dab-1) all bind to Nck-2 exclusively. And in the case of PDGFR, Tyr(P)751 binds to Nck1 while Tyr(P)1009 binds to Nck2. Nck1 and Nck2 have a role in the infection process of enteropathogenic Escherichia coli (EPEC). Their SH3 domains are involved in recruiting and activating the N-WASP/Arp2/3 complex inducing actin polymerization resulting in the production of pedestals, dynamic bacteria-presenting protrusions of the plasma membrane. A similar thing occurs in the vaccinia virus where motile plasma membrane projections are formed beneath the virus. Recently it has been shown that the SH2 domains of both Nck1 and Nck2 bind the G-protein coupled receptor kinase-interacting protein 1 (GIT1) in a phosphorylation-dependent manner. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 69.8 bits (171), Expect = 2e-15
 Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           ALYDF  ++PG+L F++GD+IT+  +SD    WW G IG R+G+FPA Y+
Sbjct: 4   ALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYV 53

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 68.5 bits (168), Expect = 4e-15
 Identities = 25/55 (45%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE 54
           E IAK++FN  +E++L F+K  +L I+ +  D NWY+A+  DG+EG+IP+NY++
Sbjct: 2  TECIAKYNFNGASEEDLPFKKGDILTIVAVTKDPNWYKAKNKDGREGMIPANYVQ 56

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 67.9 bits (166), Expect = 8e-15
 Identities = 26/52 (50%), Positives = 31/52 (59%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILN 208
           V+ALYDF   E  EL F  GDVI V D S+  WW G +  + GLFPA Y+  
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVAP 53

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 24/48 (50%), Positives = 34/48 (70%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           A Y+F      EL FR+GDVIT+T R D++W+ G IG R+G+FP +Y+
Sbjct: 4   AKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 60  WYYGRITRADAERLLSNK--HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           WY+G+I+R  AE LL  +   +G FL+R S S+PGD+ LS+     V H+++ R     F
Sbjct: 3   WYHGKISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQIRRHGEDAF 62

Query: 118 FLWV--VKFNSLNELVEYH 134
           F     + F+ L+ L+E++
Sbjct: 63  FSDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198210 cd10347, SH2_Nterm_shark_like, N-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 239 WYYGRITRADAERLLSNK--HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           WY+G+I+R  AE LL  +   +G FL+R S S+PGD+ LS+     V H+++ R     F
Sbjct: 3   WYHGKISREVAEALLLREGGRDGLFLVRESTSAPGDYVLSLLAQGEVLHYQIRRHGEDAF 62

Query: 297 FLWV--VKFNSLNELVEYH 313
           F     + F+ L+ L+E++
Sbjct: 63  FSDDGPLIFHGLDTLIEHY 81

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in the carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198233 cd10370, SH2_Src_Src42, Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42)

 Score = 66.8 bits (163), Expect = 6e-14
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 60  WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-DSSGK 116
           WY+G+I R +AE+  LL     GAFLIR SES   D+SLSV+  D V+H+++ + D  G 
Sbjct: 5   WYFGKIKRIEAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGGF 64

Query: 117 FFLWVVKFNSLNELVEYH 134
           F      F +L ELVE++
Sbjct: 65  FIARRTTFRTLQELVEHY 82

Src42 is a member of the Src non-receptor type tyrosine kinase family of proteins. The integration of receptor tyrosine kinase-induced RAS and Src42 signals by Connector eNhancer of KSR (CNK) as a two-component input is essential for RAF activation in Drosophila. Src42 is present in a wide variety of organisms including: California sea hare, pea aphid, yellow fever mosquito, honey bee, Panamanian leafcutter ant, and sea urchin. Src42 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|198233 cd10370, SH2_Src_Src42, Src homology 2 (SH2) domain found in the Src oncogene at 42A (Src42)

 Score = 66.8 bits (163), Expect = 6e-14
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 3/78 (3%)

Query: 239 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-DSSGK 295
           WY+G+I R +AE+  LL     GAFLIR SES   D+SLSV+  D V+H+++ + D  G 
Sbjct: 5   WYFGKIKRIEAEKKLLLPENEHGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGGF 64

Query: 296 FFLWVVKFNSLNELVEYH 313
           F      F +L ELVE++
Sbjct: 65  FIARRTTFRTLQELVEHY 82

Src42 is a member of the Src non-receptor type tyrosine kinase family of proteins. The integration of receptor tyrosine kinase-induced RAS and Src42 signals by Connector eNhancer of KSR (CNK) as a two-component input is essential for RAF activation in Drosophila. Src42 is present in a wide variety of organisms including: California sea hare, pea aphid, yellow fever mosquito, honey bee, Panamanian leafcutter ant, and sea urchin. Src42 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 96

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 65.3 bits (160), Expect = 7e-14
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE 54
            A +D+ A   DELSF+K  ++ +L   DD  W++  L  GKEGL PSNY+E
Sbjct: 5  VRALYDYTAQDPDELSFKKGDIITVLEKSDD-GWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 64.9 bits (159), Expect = 9e-14
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPA 203
            ALYD+T +EP EL F++GD+I V ++SD  WW G   G ++GL P+
Sbjct: 1   VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 58  HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
             W+ G + R  AE  L N+ +G +L+RV       ++LS+K +  V+H K+ + S G +
Sbjct: 5   FLWFVGEMERDTAENRLENRPDGTYLVRVRPQGETQYALSIKYNGDVKHMKIEQRSDGLY 64

Query: 118 FLWVVK-FNSLNELVEYHRTASVSRS 142
           +L   + F SL ELV Y+   S+  +
Sbjct: 65  YLSESRHFKSLVELVNYYERNSLGEN 90

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198193 cd09940, SH2_Vav_family, Src homology 2 (SH2) domain found in the Vav family

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
             W+ G + R  AE  L N+ +G +L+RV       ++LS+K +  V+H K+ + S G +
Sbjct: 5   FLWFVGEMERDTAENRLENRPDGTYLVRVRPQGETQYALSIKYNGDVKHMKIEQRSDGLY 64

Query: 297 FLWVVK-FNSLNELVEYHRTASVSRS 321
           +L   + F SL ELV Y+   S+  +
Sbjct: 65  YLSESRHFKSLVELVNYYERNSLGEN 90

Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, Vav2 and Vav3 are more ubiquitously expressed. The members here include insect and amphibian Vavs. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr

 Score = 66.1 bits (161), Expect = 1e-13
 Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 59  DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
           +WY+G+I R DAER L       GAFLIR SE++ G +SLS++       D V+H+K+ +
Sbjct: 4   EWYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSIRDWDQNRGDHVKHYKIRK 63

Query: 112 -DSSGKFFLWVVKFNSLNELVEYH 134
            D+ G +     +F+++ ELV+++
Sbjct: 64  LDTGGYYITTRAQFDTVQELVQHY 87

Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198230 cd10367, SH2_Src_Fgr, Src homology 2 (SH2) domain found in Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, Fgr

 Score = 66.1 bits (161), Expect = 1e-13
 Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 238 DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 290
           +WY+G+I R DAER L       GAFLIR SE++ G +SLS++       D V+H+K+ +
Sbjct: 4   EWYFGKIGRKDAERQLLSPGNPRGAFLIRESETTKGAYSLSIRDWDQNRGDHVKHYKIRK 63

Query: 291 -DSSGKFFLWVVKFNSLNELVEYH 313
            D+ G +     +F+++ ELV+++
Sbjct: 64  LDTGGYYITTRAQFDTVQELVQHY 87

Fgr is a member of the Src non-receptor type tyrosine kinase family of proteins. The protein contains N-terminal sites for myristoylation and palmitoylation, a PTK domain, and SH2 and SH3 domains which are involved in mediating protein-protein interactions with phosphotyrosine-containing and proline-rich motifs, respectively. Fgr is expressed in B-cells and myeloid cells, localizes to plasma membrane ruffles, and functions as a negative regulator of cell migration and adhesion triggered by the beta-2 integrin signal transduction pathway. Multiple alternatively spliced variants, encoding the same protein, have been identified Fgr has been shown to interact with Wiskott-Aldrich syndrome protein. Fgr has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALYD+  Q P EL F  GD++ ++D+SD +WW    G + GL P+ Y+
Sbjct: 2   FRALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYV 51

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 4/79 (5%)

Query: 60  WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLRDSSGKF 117
           W++G ++  +AE+LL  K + G+FL+R S+S PGDF LSV+  D  V H  + R   GK+
Sbjct: 2   WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMI-RCQGGKY 60

Query: 118 -FLWVVKFNSLNELVEYHR 135
                 +F+SL +LVE+++
Sbjct: 61  DVGGGEEFDSLTDLVEHYK 79

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198185 cd09931, SH2_C-SH2_SHP_like, C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 4/79 (5%)

Query: 239 WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLRDSSGKF 296
           W++G ++  +AE+LL  K + G+FL+R S+S PGDF LSV+  D  V H  + R   GK+
Sbjct: 2   WFHGHLSGKEAEKLLLEKGKPGSFLVRESQSKPGDFVLSVRTDDDKVTHIMI-RCQGGKY 60

Query: 297 -FLWVVKFNSLNELVEYHR 314
                 +F+SL +LVE+++
Sbjct: 61  DVGGGEEFDSLTDLVEHYK 79

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [SIVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          + IA +D+ A  EDELSF K Q++ +LN +DD +W++ E++G  GL PSNY++M
Sbjct: 2  QVIAMYDYTANNEDELSFSKGQLINVLN-KDDPDWWQGEINGVTGLFPSNYVKM 54

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          IA   + A  EDELSF+K  ++ +L+ +DD +W+R EL+G+ GL PSNY+E 
Sbjct: 3  IALFPYTAQNEDELSFQKGDIINVLS-KDDPDWWRGELNGQTGLFPSNYVEP 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALY +T     EL  + GD+I V ++ D  WW GE+  +KG+FPATY+
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYV 51

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198221 cd10358, SH2_PTK6_Brk, Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast tumor kinase (Brk)

 Score = 64.8 bits (157), Expect = 4e-13
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 60  WYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           W++G I+R++A R L       GAFLIRVSE    D+ LSV+ +  V+H+K+ R + G+ 
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63

Query: 118 FL-WVVKFNSLNELVEYHRTASVS 140
            L   V F SL ELV YHR  S+S
Sbjct: 64  HLNEAVSFLSLPELVNYHRAQSLS 87

Human protein-tyrosine kinase-6 (PTK6, also known as breast tumor kinase (Brk)) is a member of the non-receptor protein-tyrosine kinase family and is expressed in two-thirds of all breast tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2 domain, and catalytic domains. For the case of the non-receptor protein-tyrosine kinases, the SH2 domain is typically involved in negative regulation of kinase activity by binding to a phosphorylated tyrosine residue near to the C terminus. The C-terminal sequence of PTK6 (PTSpYENPT where pY is phosphotyrosine) is thought to be a self-ligand for the SH2 domain. The structure of the SH2 domain resembles other SH2 domains except for a centrally located four-stranded antiparallel beta-sheet (strands betaA, betaB, betaC, and betaD). There are also differences in the loop length which might be responsible for PTK6 ligand specificity. There are two possible means of regulation of PTK6: autoinhibitory with the phosphorylation of Tyr playing a role in its negative regulation and autophosphorylation at this site, though it has been shown that PTK6 might phosphorylate signal transduction-associated proteins Sam68 and signal transducing adaptor family member 2 (STAP/BKS) in vivo. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198221 cd10358, SH2_PTK6_Brk, Src homology 2 domain found in protein-tyrosine kinase-6 (PTK6) which is also known as breast tumor kinase (Brk)

 Score = 64.8 bits (157), Expect = 4e-13
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 239 WYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           W++G I+R++A R L       GAFLIRVSE    D+ LSV+ +  V+H+K+ R + G+ 
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63

Query: 297 FL-WVVKFNSLNELVEYHRTASVS 319
            L   V F SL ELV YHR  S+S
Sbjct: 64  HLNEAVSFLSLPELVNYHRAQSLS 87

Human protein-tyrosine kinase-6 (PTK6, also known as breast tumor kinase (Brk)) is a member of the non-receptor protein-tyrosine kinase family and is expressed in two-thirds of all breast tumors. PTK6 (9). PTK6 contains a SH3 domain, a SH2 domain, and catalytic domains. For the case of the non-receptor protein-tyrosine kinases, the SH2 domain is typically involved in negative regulation of kinase activity by binding to a phosphorylated tyrosine residue near to the C terminus. The C-terminal sequence of PTK6 (PTSpYENPT where pY is phosphotyrosine) is thought to be a self-ligand for the SH2 domain. The structure of the SH2 domain resembles other SH2 domains except for a centrally located four-stranded antiparallel beta-sheet (strands betaA, betaB, betaC, and betaD). There are also differences in the loop length which might be responsible for PTK6 ligand specificity. There are two possible means of regulation of PTK6: autoinhibitory with the phosphorylation of Tyr playing a role in its negative regulation and autophosphorylation at this site, though it has been shown that PTK6 might phosphorylate signal transduction-associated proteins Sam68 and signal transducing adaptor family member 2 (STAP/BKS) in vivo. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm)

 Score = 63.8 bits (155), Expect = 4e-13
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 5/79 (6%)

Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 116
           WY+  I+R  A++LL    N+  GAFLIR SESS G +SLSV+    V H+++    SG 
Sbjct: 2   WYFSGISRTQAQQLLLSPPNEP-GAFLIRPSESSLGGYSLSVRAQAKVCHYRICMAPSGS 60

Query: 117 FFLWVVK-FNSLNELVEYH 134
            +L   + F  L EL+ Y+
Sbjct: 61  LYLQKGRLFPGLEELLAYY 79

Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 79

>gnl|CDD|198223 cd10360, SH2_Srm, Src homology 2 (SH2) domain found in Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (srm)

 Score = 63.8 bits (155), Expect = 4e-13
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 5/79 (6%)

Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 295
           WY+  I+R  A++LL    N+  GAFLIR SESS G +SLSV+    V H+++    SG 
Sbjct: 2   WYFSGISRTQAQQLLLSPPNEP-GAFLIRPSESSLGGYSLSVRAQAKVCHYRICMAPSGS 60

Query: 296 FFLWVVK-FNSLNELVEYH 313
            +L   + F  L EL+ Y+
Sbjct: 61  LYLQKGRLFPGLEELLAYY 79

Srm is a nonreceptor protein kinase that has two SH2 domains, a SH3 domain, and a kinase domain with a tyrosine residue for autophosphorylation. However it lacks an N-terminal glycine for myristoylation and a C-terminal tyrosine which suppresses kinase activity when phosphorylated. Srm is most similar to members of the Tec family who other members include: Tec, Btk/Emb, and Itk/Tsk/Emt. However Srm differs in its N-terminal unique domain it being much smaller than in the Tec family and is closer to Src. Srm is thought to be a new family of nonreceptor tyrosine kinases that may be redundant in function. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 79

>gnl|CDD|198225 cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck)

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 60  WYYGRITRADAERLLS---NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SE++ G FSLSV+       + V+H+K+  
Sbjct: 5   WFFKNLSRNDAERQLLAPGNTH-GSFLIRESETTAGSFSLSVRDFDQNQGEVVKHYKIRN 63

Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS 91

Lck is a member of the Src non-receptor type tyrosine kinase family of proteins. It is expressed in the brain, T-cells, and NK cells. The unique domain of Lck mediates its interaction with two T-cell surface molecules, CD4 and CD8. It associates with their cytoplasmic tails on CD4 T helper cells and CD8 cytotoxic T cells to assist signaling from the T cell receptor (TCR) complex. When the T cell receptor is engaged by the specific antigen presented by MHC, Lck phosphorylase the intracellular chains of the CD3 and zeta-chains of the TCR complex, allowing ZAP-70 to bind them. Lck then phosphorylates and activates ZAP-70, which in turn phosphorylates Linker of Activated T cells (LAT), a transmembrane protein that serves as a docking site for proteins including: Shc-Grb2-SOS, PI3K, and phospholipase C (PLC). The tyrosine phosphorylation cascade culminates in the intracellular mobilization of a calcium ions and activation of important signaling cascades within the lymphocyte, including the Ras-MEK-ERK pathway, which goes on to activate certain transcription factors such as NFAT, NF-kappaB, and AP-1. These transcription factors regulate the production cytokines such as Interleukin-2 that promote long-term proliferation and differentiation of the activated lymphocytes. The N-terminal tail of Lck is myristoylated and palmitoylated and it tethers the protein to the plasma membrane of the cell. Lck also contains a SH3 domain, a SH2 domain, and a C-terminal tyrosine kinase domain. Lck has 2 phosphorylation sites, the first an autophosphorylation site that is linked to activation of the protein and the second which is phosphorylated by Csk, which inhibits it. Lck is also inhibited by SHP-1 dephosphorylation and by Cbl ubiquitin ligase, which is part of the ubiquitin-mediated pathway. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198225 cd10362, SH2_Src_Lck, Src homology 2 (SH2) domain in lymphocyte cell kinase (Lck)

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 239 WYYGRITRADAERLLS---NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SE++ G FSLSV+       + V+H+K+  
Sbjct: 5   WFFKNLSRNDAERQLLAPGNTH-GSFLIRESETTAGSFSLSVRDFDQNQGEVVKHYKIRN 63

Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS 91

Lck is a member of the Src non-receptor type tyrosine kinase family of proteins. It is expressed in the brain, T-cells, and NK cells. The unique domain of Lck mediates its interaction with two T-cell surface molecules, CD4 and CD8. It associates with their cytoplasmic tails on CD4 T helper cells and CD8 cytotoxic T cells to assist signaling from the T cell receptor (TCR) complex. When the T cell receptor is engaged by the specific antigen presented by MHC, Lck phosphorylase the intracellular chains of the CD3 and zeta-chains of the TCR complex, allowing ZAP-70 to bind them. Lck then phosphorylates and activates ZAP-70, which in turn phosphorylates Linker of Activated T cells (LAT), a transmembrane protein that serves as a docking site for proteins including: Shc-Grb2-SOS, PI3K, and phospholipase C (PLC). The tyrosine phosphorylation cascade culminates in the intracellular mobilization of a calcium ions and activation of important signaling cascades within the lymphocyte, including the Ras-MEK-ERK pathway, which goes on to activate certain transcription factors such as NFAT, NF-kappaB, and AP-1. These transcription factors regulate the production cytokines such as Interleukin-2 that promote long-term proliferation and differentiation of the activated lymphocytes. The N-terminal tail of Lck is myristoylated and palmitoylated and it tethers the protein to the plasma membrane of the cell. Lck also contains a SH3 domain, a SH2 domain, and a C-terminal tyrosine kinase domain. Lck has 2 phosphorylation sites, the first an autophosphorylation site that is linked to activation of the protein and the second which is phosphorylated by Csk, which inhibits it. Lck is also inhibited by SHP-1 dephosphorylation and by Cbl ubiquitin ligase, which is part of the ubiquitin-mediated pathway. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 62.9 bits (153), Expect = 4e-13
 Identities = 25/48 (52%), Positives = 32/48 (66%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALY F PQE  +LE R GD IT+ D S++ WW G+I  R G FPA ++
Sbjct: 4   ALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 62.5 bits (153), Expect = 6e-13
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNY 52
          A A +D+ A  +DELSF+K  ++ +L  +DD  W+  EL  G+EGL P+NY
Sbjct: 2  ARALYDYEAQDDDELSFKKGDIITVLEKDDD-GWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|198203 cd10340, SH2_N-SH2_SHP_like, N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 64.0 bits (156), Expect = 6e-13
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)

Query: 60  WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++  I+  +AE LL  +   G+FL R S+S+PGDF+LSV+  D V H K+   ++G ++
Sbjct: 2   WFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHIKI--QNTGDYY 59

Query: 119 LWVV--KFNSLNELVEYH 134
                 KF +L+ELV+Y+
Sbjct: 60  DLYGGEKFATLSELVQYY 77

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198203 cd10340, SH2_N-SH2_SHP_like, N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

 Score = 64.0 bits (156), Expect = 6e-13
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)

Query: 239 WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           W++  I+  +AE LL  +   G+FL R S+S+PGDF+LSV+  D V H K+   ++G ++
Sbjct: 2   WFHPVISGIEAENLLKTRGVDGSFLARPSKSNPGDFTLSVRRGDEVTHIKI--QNTGDYY 59

Query: 298 LWVV--KFNSLNELVEYH 313
                 KF +L+ELV+Y+
Sbjct: 60  DLYGGEKFATLSELVQYY 77

The SH2 domain phosphatases (SHP-1, SHP-2/Syp, Drosophila corkscrew (csw), and Caenorhabditis elegans Protein Tyrosine Phosphatase (Ptp-2)) are cytoplasmic signaling enzymes. They are both targeted and regulated by interactions of their SH2 domains with phosphotyrosine docking sites. These proteins contain two SH2 domains (N-SH2, C-SH2) followed by a tyrosine phosphatase (PTP) domain, and a C-terminal extension. Shp1 and Shp2 have two tyrosyl phosphorylation sites in their C-tails, which are phosphorylated differentially by receptor and nonreceptor PTKs. Csw retains the proximal tyrosine and Ptp-2 lacks both sites. Shp-binding proteins include receptors, scaffolding adapters, and inhibitory receptors. Some of these bind both Shp1 and Shp2 while others bind only one. Most proteins that bind a Shp SH2 domain contain one or more immuno-receptor tyrosine-based inhibitory motifs (ITIMs): [IVL]xpYxx[IVL]. Shp1 N-SH2 domain blocks the catalytic domain and keeps the enzyme in the inactive conformation, and is thus believed to regulate the phosphatase activity of SHP-1. Its C-SH2 domain is thought to be involved in searching for phosphotyrosine activators. The SHP2 N-SH2 domain is a conformational switch; it either binds and inhibits the phosphatase, or it binds phosphoproteins and activates the enzyme. The C-SH2 domain contributes binding energy and specificity, but it does not have a direct role in activation. Csw SH2 domain function is essential, but either SH2 domain can fulfill this requirement. The role of the csw SH2 domains during Sevenless receptor tyrosine kinase (SEV) signaling is to bind Daughter of Sevenless rather than activated SEV. Ptp-2 acts in oocytes downstream of sheath/oocyte gap junctions to promote major sperm protein (MSP)-induced MAP Kinase (MPK-1) phosphorylation. Ptp-2 functions in the oocyte cytoplasm, not at the cell surface to inhibit multiple RasGAPs, resulting in sustained Ras activation. It is thought that MSP triggers PTP-2/Ras activation and ROS production to stimulate MPK-1 activity essential for oocyte maturation and that secreted MSP domains and Cu/Zn superoxide dismutases function antagonistically to control ROS and MAPK signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198255 cd10392, SH2_SHF, Src homology 2 domain found in SH2 domain-containing adapter protein F (SHF)

 Score = 63.9 bits (155), Expect = 6e-13
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G I+R DAE LL    E ++L+R SE+S  DFSLS+K S G  H K+ R    K+ L
Sbjct: 3   WYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTKEHKYVL 62

Query: 120 W--VVKFNSLNELVEYH 134
                 F+S+ E++ ++
Sbjct: 63  GQNSPPFSSVPEIIHHY 79

SHF is thought to play a role in PDGF-receptor signaling and regulation of apoptosis. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198255 cd10392, SH2_SHF, Src homology 2 domain found in SH2 domain-containing adapter protein F (SHF)

 Score = 63.9 bits (155), Expect = 6e-13
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY+G I+R DAE LL    E ++L+R SE+S  DFSLS+K S G  H K+ R    K+ L
Sbjct: 3   WYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLSLKSSQGFMHMKLSRTKEHKYVL 62

Query: 299 W--VVKFNSLNELVEYH 313
                 F+S+ E++ ++
Sbjct: 63  GQNSPPFSSVPEIIHHY 79

SHF is thought to play a role in PDGF-receptor signaling and regulation of apoptosis. SHF is mainly expressed in skeletal muscle, brain, liver, prostate, testis, ovary, small intestine, and colon. SHF contains four putative tyrosine phosphorylation sites and an SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score = 64.0 bits (156), Expect = 7e-13
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W  G I R  AE LL  K +G FLIR S S+ G ++ SV C+  V+H  + +  +G  + 
Sbjct: 8   WLVGDINRTQAEELLRGKPDGTFLIRES-STQGCYACSVVCNGEVKHCVIYKTETG--YG 64

Query: 120 WVVKFN---SLNELVEYHRTASVSRSQD 144
           +   +N   SL ELV ++   S+ +  D
Sbjct: 65  FAEPYNLYESLKELVLHYAHNSLEQHND 92

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198184 cd09930, SH2_cSH2_p85_like, C-terminal Src homology 2 (cSH2) domain found in p85

 Score = 64.0 bits (156), Expect = 7e-13
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W  G I R  AE LL  K +G FLIR S S+ G ++ SV C+  V+H  + +  +G  + 
Sbjct: 8   WLVGDINRTQAEELLRGKPDGTFLIRES-STQGCYACSVVCNGEVKHCVIYKTETG--YG 64

Query: 299 WVVKFN---SLNELVEYHRTASVSRSQD 323
           +   +N   SL ELV ++   S+ +  D
Sbjct: 65  FAEPYNLYESLKELVLHYAHNSLEQHND 92

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, a inter SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and 2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: 1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, 2) p85 iSH2 domain with C2 domain of p110alpha, and 3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 63.8 bits (156), Expect = 7e-13
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 6/79 (7%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G+I+R +AERLL    +G FL+R S + PGD++L V     V+H++V+   +GK  L
Sbjct: 5   WFHGKISREEAERLLQPPEDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIY-RNGK--L 61

Query: 120 WV---VKFNSLNELVEYHR 135
            +     F +L +LVE++ 
Sbjct: 62  TIDEEEYFENLIQLVEHYT 80

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198190 cd09937, SH2_csk_like, Src homology 2 (SH2) domain found in Carboxyl-Terminal Src Kinase (Csk)

 Score = 63.8 bits (156), Expect = 7e-13
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 6/79 (7%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G+I+R +AERLL    +G FL+R S + PGD++L V     V+H++V+   +GK  L
Sbjct: 5   WFHGKISREEAERLLQPPEDGLFLVRESTNYPGDYTLCVSFEGKVEHYRVIY-RNGK--L 61

Query: 299 WV---VKFNSLNELVEYHR 314
            +     F +L +LVE++ 
Sbjct: 62  TIDEEEYFENLIQLVEHYT 80

Both the C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) are members of the CSK-family of protein tyrosine kinases. These proteins suppress activity of Src-family kinases (SFK) by selectively phosphorylating the conserved C-terminal tail regulatory tyrosine by a similar mechanism. CHK is also capable of inhibiting SFKs by a non-catalytic mechanism that involves binding of CHK to SFKs to form stable protein complexes. The unphosphorylated form of SFKs is inhibited by CSK and CHK by a two-step mechanism. The first step involves the formation of a complex of SFKs with CSK/CHK with the SFKs in the complex are inactive. The second step, involves the phosphorylation of the C-terminal tail tyrosine of SFKs, which then dissociates and adopt an inactive conformation. The structural basis of how the phosphorylated SFKs dissociate from CSK/CHK to adopt the inactive conformation is not known. The inactive conformation of SFKs is stabilized by two intramolecular inhibitory interactions: (a) the pYT:SH2 interaction in which the phosphorylated C-terminal tail tyrosine (YT) binds to the SH2 domain, and (b) the linker:SH3 interaction of which the SH2-kinase domain linker binds to the SH3 domain. SFKs are activated by multiple mechanisms including binding of the ligands to the SH2 and SH3 domains to displace the two inhibitory intramolecular interactions, autophosphorylation, and dephosphorylation of YT. By selective phosphorylation and the non-catalytic inhibitory mechanism CSK and CHK are able to inhibit the active forms of SFKs. CSK and CHK are regulated by phosphorylation and inter-domain interactions. They both contain SH3, SH2, and kinase domains separated by the SH3-SH2 connector and SH2 kinase linker, intervening segments separating the three domains. They lack a conserved tyrosine phosphorylation site in the kinase domain and the C-terminal tail regulatory tyrosine phosphorylation site. The CSK SH2 domain is crucial for stabilizing the kinase domain in the active conformation. A disulfide bond here regulates CSK kinase activity. The subcellular localization and activity of CSK are regulated by its SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 62.1 bits (151), Expect = 8e-13
 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 25/76 (32%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           ALY F   E  EL F++GD++                          ILNMEDD NWY+A
Sbjct: 4   ALYSFQATESDELPFQKGDILK-------------------------ILNMEDDQNWYKA 38

Query: 219 ELDGKEGLIPSNYIEM 234
           EL G+EG IP NYI++
Sbjct: 39  ELQGREGYIPKNYIKV 54

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 62.0 bits (151), Expect = 8e-13
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V AL+ +T Q   EL F++GD+I V  + D  WW GE+  + GLFP+ Y+
Sbjct: 2   VIALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 62.4 bits (152), Expect = 8e-13
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALY F  Q   EL  ++GD+I +  + D++W+ GE   R G+FPA+Y+
Sbjct: 4   ALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            ALY +   EPG+L F  GDVI VT + D  WW G IG R G+FP+ Y+
Sbjct: 3   IALYPYESNEPGDLTFNAGDVILVT-KKDGEWWTGTIGDRTGIFPSNYV 50

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALYDF   E  EL F+ G++ITV D SD +WW G     +GLFPA ++
Sbjct: 3   VRALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src)

 Score = 62.8 bits (152), Expect = 2e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 8/85 (9%)

Query: 59  DWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 4   EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63

Query: 112 DSSGKFFLWV-VKFNSLNELVEYHR 135
             SG F++    +FNSL +LV Y+ 
Sbjct: 64  LDSGGFYITSRTQFNSLQQLVAYYS 88

Src is a member of the Src non-receptor type tyrosine kinase family of proteins. Src is thought to play a role in the regulation of embryonic development and cell growth. Members here include v-Src and c-Src. v-Src lacks the C-terminal inhibitory phosphorylation site and is therefore constitutively active as opposed to normal cellular src (c-Src) which is only activated under certain circumstances where it is required (e.g. growth factor signaling). v-Src is an oncogene whereas c-Src is a proto-oncogene. c-Src consists of three domains, an N-terminal SH3 domain, a central SH2 domain and a tyrosine kinase domain. The SH2 and SH3 domains work together in the auto-inhibition of the kinase domain. The phosphorylation of an inhibitory tyrosine near the c-terminus of the protein produces a binding site for the SH2 domain which then facilitates binding of the SH3 domain to a polyproline site within the linker between the SH2 domain and the kinase domain. Binding of the SH3 domain inactivates the enzyme. This allows for multiple mechanisms for c-Src activation: dephosphorylation of the C-terminal tyrosine by a protein tyrosine phosphatase, binding of the SH2 domain by a competitive phospho-tyrosine residue, or competitive binding of a polyproline binding site to the SH3 domain. Unlike most other Src members Src lacks cysteine residues in the SH4 domain that undergo palmitylation. Serine and threonine phosphorylation sites have also been identified in the unique domains of Src and are believed to modulate protein-protein interactions or regulate catalytic activity. Alternatively spliced forms of Src, which contain 6- or 11-amino acid insertions in the SH3 domain, are expressed in CNS neurons. c-Src has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine kinase sarcoma (Src)

 Score = 62.8 bits (152), Expect = 2e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 8/85 (9%)

Query: 238 DWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 4   EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63

Query: 291 DSSGKFFLWV-VKFNSLNELVEYHR 314
             SG F++    +FNSL +LV Y+ 
Sbjct: 64  LDSGGFYITSRTQFNSLQQLVAYYS 88

Src is a member of the Src non-receptor type tyrosine kinase family of proteins. Src is thought to play a role in the regulation of embryonic development and cell growth. Members here include v-Src and c-Src. v-Src lacks the C-terminal inhibitory phosphorylation site and is therefore constitutively active as opposed to normal cellular src (c-Src) which is only activated under certain circumstances where it is required (e.g. growth factor signaling). v-Src is an oncogene whereas c-Src is a proto-oncogene. c-Src consists of three domains, an N-terminal SH3 domain, a central SH2 domain and a tyrosine kinase domain. The SH2 and SH3 domains work together in the auto-inhibition of the kinase domain. The phosphorylation of an inhibitory tyrosine near the c-terminus of the protein produces a binding site for the SH2 domain which then facilitates binding of the SH3 domain to a polyproline site within the linker between the SH2 domain and the kinase domain. Binding of the SH3 domain inactivates the enzyme. This allows for multiple mechanisms for c-Src activation: dephosphorylation of the C-terminal tyrosine by a protein tyrosine phosphatase, binding of the SH2 domain by a competitive phospho-tyrosine residue, or competitive binding of a polyproline binding site to the SH3 domain. Unlike most other Src members Src lacks cysteine residues in the SH4 domain that undergo palmitylation. Serine and threonine phosphorylation sites have also been identified in the unique domains of Src and are believed to modulate protein-protein interactions or regulate catalytic activity. Alternatively spliced forms of Src, which contain 6- or 11-amino acid insertions in the SH3 domain, are expressed in CNS neurons. c-Src has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 24/51 (47%), Positives = 33/51 (64%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           L +AL+D    +P EL F+ GDVI V D SD+ WW G I   +G FPA+++
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 21/49 (42%), Positives = 35/49 (71%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALY +  +EPG+L+F +GD+I +  + D++W+HGE+    G  PA+YI
Sbjct: 4   KALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELNGCHGFLPASYI 52

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATY 205
           V+ALYD       EL F  G++I VT   D  WW G I    +R+G+FP ++
Sbjct: 2   VRALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198253 cd10390, SH2_SHD, Src homology 2 domain found in SH2 domain-containing adapter proteins D (SHD)

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G ++RADAE LLS   EG++L+R+SE+ P D SLS++ S G  H K  R    +  L
Sbjct: 3   WFHGPLSRADAENLLSLCKEGSYLVRLSETRPQDCSLSLRSSQGFLHLKFARTRENQVVL 62

Query: 120 WVVK--FNSLNELVEYHRT 136
                 F S+ ELV ++ +
Sbjct: 63  GQHSGPFPSVPELVLHYSS 81

The expression of SHD is restricted to the brain. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198253 cd10390, SH2_SHD, Src homology 2 domain found in SH2 domain-containing adapter proteins D (SHD)

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G ++RADAE LLS   EG++L+R+SE+ P D SLS++ S G  H K  R    +  L
Sbjct: 3   WFHGPLSRADAENLLSLCKEGSYLVRLSETRPQDCSLSLRSSQGFLHLKFARTRENQVVL 62

Query: 299 WVVK--FNSLNELVEYHRT 315
                 F S+ ELV ++ +
Sbjct: 63  GQHSGPFPSVPELVLHYSS 81

The expression of SHD is restricted to the brain. SHD may be a physiological substrate of c-Abl and may function as an adapter protein in the central nervous system. It is also thought to be involved in apoptotic regulation. SHD contains five YXXP motifs, a substrate sequence preferred by Abl tyrosine kinases, in addition to a poly-proline rich region and a C-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 60.8 bits (148), Expect = 6e-12
 Identities = 24/73 (32%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           Y+G I+R +AE+LLS   +G++LIR S    G ++LS++ +  V+++K+  D     + +
Sbjct: 9   YHGLISREEAEQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNYKLYYD-GKNHYHY 67

Query: 121 VV--KFNSLNELV 131
           V   +F+++++LV
Sbjct: 68  VGEKRFDTIHDLV 80

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|198215 cd10352, SH2_a2chimerin_b2chimerin, Src homology 2 (SH2) domain found in alpha2-chimerin and beta2-chimerin proteins

 Score = 60.8 bits (148), Expect = 6e-12
 Identities = 24/73 (32%), Positives = 48/73 (65%), Gaps = 3/73 (4%)

Query: 240 YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 299
           Y+G I+R +AE+LLS   +G++LIR S    G ++LS++ +  V+++K+  D     + +
Sbjct: 9   YHGLISREEAEQLLSGASDGSYLIRESSRDDGYYTLSLRFNGKVKNYKLYYD-GKNHYHY 67

Query: 300 VV--KFNSLNELV 310
           V   +F+++++LV
Sbjct: 68  VGEKRFDTIHDLV 80

Chimerins are a family of phorbol ester- and diacylglycerol-responsive GTPase-activating proteins. Alpha1-chimerin (formerly known as n-chimerin) and alpha2-chimerin are alternatively spliced products of a single gene, as are beta1- and beta2-chimerin. alpha1- and beta1-chimerin have a relatively short N-terminal region that does not encode any recognizable domains, whereas alpha2- and beta2-chimerin both include a functional SH2 domain that can bind to phosphotyrosine motifs within receptors. All of the isoforms contain a GAP domain with specificity in vitro for Rac1 and a diacylglycerol (DAG)-binding C1 domain which allows them to translocate to membranes in response to DAG signaling and anchors them in close proximity to activated Rac. Other C1 domain-containing diacylglycerol receptors including: PKC, Munc-13 proteins, phorbol ester binding scaffolding proteins involved in Ca2+-stimulated exocytosis, and RasGRPs, diacylglycerol-activated guanine-nucleotide exchange factors (GEFs) for Ras and Rap1. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 91

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPS 50
          +A +D+ A   DELSF+K  ++ +L   DD  W++  L  GKEGLIPS
Sbjct: 1  VALYDYTAREPDELSFKKGDIIIVLEKSDD-GWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B)

 Score = 61.1 bits (148), Expect = 7e-12
 Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 7/87 (8%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF-- 117
           W++G I+R +AE LL N  EG+FL+RVSE   G ++LS +   G +HF  L D+SG F  
Sbjct: 9   WFHGIISREEAEALLMNATEGSFLVRVSEKIWG-YTLSYRLQSGFKHF--LVDASGDFYS 65

Query: 118 FLWV--VKFNSLNELVEYHRTASVSRS 142
           FL V   +  +L +L+++H+   ++ S
Sbjct: 66  FLGVDPNRHATLTDLIDFHKEEIITTS 92

SH2D4B contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198214 cd10351, SH2_SH2D4B, Src homology 2 domain found in the SH2 domain containing protein 4B (SH2D4B)

 Score = 61.1 bits (148), Expect = 7e-12
 Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 7/87 (8%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF-- 296
           W++G I+R +AE LL N  EG+FL+RVSE   G ++LS +   G +HF  L D+SG F  
Sbjct: 9   WFHGIISREEAEALLMNATEGSFLVRVSEKIWG-YTLSYRLQSGFKHF--LVDASGDFYS 65

Query: 297 FLWV--VKFNSLNELVEYHRTASVSRS 321
           FL V   +  +L +L+++H+   ++ S
Sbjct: 66  FLGVDPNRHATLTDLIDFHKEEIITTS 92

SH2D4B contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 59.0 bits (144), Expect = 9e-12
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             + ++D+   +P EL  ++GDV+ V D+ D  WW GE G R+GL P++Y+
Sbjct: 1   YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYV 51

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 57  NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
           + +W++  +TR  AE +L     +GAFL+R SE+ P  F++S +    ++H ++ ++  G
Sbjct: 3   SKEWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQE--G 60

Query: 116 KFF-LWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 156
           + F +   +F SL ELV Y+    + R   +KLR  V EE L
Sbjct: 61  RLFVIGTSQFESLVELVSYYEKHPLYRK--IKLRYPVNEELL 100

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198186 cd09932, SH2_C-SH2_PLC_gamma_like, C-terminal Src homology 2 (C-SH2) domain in Phospholipase C gamma

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 236 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
           + +W++  +TR  AE +L     +GAFL+R SE+ P  F++S +    ++H ++ ++  G
Sbjct: 3   SKEWFHANLTREQAEEMLMRVPRDGAFLVRPSETDPNSFAISFRAEGKIKHCRIKQE--G 60

Query: 295 KFF-LWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
           + F +   +F SL ELV Y+    + R   +KLR  V EE L
Sbjct: 61  RLFVIGTSQFESLVELVSYYEKHPLYRK--IKLRYPVNEELL 100

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score = 60.4 bits (146), Expect = 1e-11
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G I+RA+AE  L    E ++L+R SES    +S+++K S G  H  V +    K+ L
Sbjct: 3   WYHGSISRAEAESRLQPCKEASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKYTL 62

Query: 120 WVVK--FNSLNELVEYHRTA 137
                 F+S+ E+V Y+   
Sbjct: 63  NQTSAVFDSIPEVVHYYSNE 82

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|198254 cd10391, SH2_SHE, Src homology 2 domain found in SH2 domain-containing adapter protein E (SHE)

 Score = 60.4 bits (146), Expect = 1e-11
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY+G I+RA+AE  L    E ++L+R SES    +S+++K S G  H  V +    K+ L
Sbjct: 3   WYHGSISRAEAESRLQPCKEASYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKYTL 62

Query: 299 WVVK--FNSLNELVEYHRTA 316
                 F+S+ E+V Y+   
Sbjct: 63  NQTSAVFDSIPEVVHYYSNE 82

SHE is expressed in heart, lung, brain, and skeletal muscle. SHE contains two pTry protein binding domains, protein interaction domain (PID) and a SH2 domain, followed by a glycine-proline rich region, all of which are N-terminal to the phosphotyrosine binding (PTB) domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 98

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+A+YDF   E  EL F+ GD+IT+ D SD +WW GE     GLFP+ ++
Sbjct: 3   VRAIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198199 cd09946, SH2_HSH2_like, Src homology 2 domain found in hematopoietic SH2 (HSH2) protein

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 59  DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF--KVLRDSSGK 116
           +W++G I+R  AE +L ++  G+FLIRVS S  G ++LS K     +HF  K+L D +  
Sbjct: 8   EWFHGAISREAAENMLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCRHFMVKLLDDGTFM 66

Query: 117 FFLWVVKFNSLNELVEYHR 135
                V   SL+ LV +H+
Sbjct: 67  IPGEKVAHTSLHALVTFHQ 85

HSH2 is thought to function as an adapter protein involved in tyrosine kinase signaling. It may also be involved in regulating cytokine signaling and cytoskeletal reorganization in hematopoietic cells. HSH2 contains several putative protein-binding motifs, SH3-binding proline-rich regions, and phosphotyrosine sites, but lacks enzymatic motifs. HSH2 was found to interact with cytokine-regulated tyrosine kinase c-FES and an activated Cdc42-associated tyrosine kinase ACK1. HSH2 binds c-FES through both its C-terminal region and its N-terminal region including the SH2 domain and binds ACK1 via its N-terminal proline-rich region. Both kinases bound and tyrosine-phosphorylated HSH2 in mammalian cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198199 cd09946, SH2_HSH2_like, Src homology 2 domain found in hematopoietic SH2 (HSH2) protein

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 238 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF--KVLRDSSGK 295
           +W++G I+R  AE +L ++  G+FLIRVS S  G ++LS K     +HF  K+L D +  
Sbjct: 8   EWFHGAISREAAENMLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCRHFMVKLLDDGTFM 66

Query: 296 FFLWVVKFNSLNELVEYHR 314
                V   SL+ LV +H+
Sbjct: 67  IPGEKVAHTSLHALVTFHQ 85

HSH2 is thought to function as an adapter protein involved in tyrosine kinase signaling. It may also be involved in regulating cytokine signaling and cytoskeletal reorganization in hematopoietic cells. HSH2 contains several putative protein-binding motifs, SH3-binding proline-rich regions, and phosphotyrosine sites, but lacks enzymatic motifs. HSH2 was found to interact with cytokine-regulated tyrosine kinase c-FES and an activated Cdc42-associated tyrosine kinase ACK1. HSH2 binds c-FES through both its C-terminal region and its N-terminal region including the SH2 domain and binds ACK1 via its N-terminal proline-rich region. Both kinases bound and tyrosine-phosphorylated HSH2 in mammalian cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 19/49 (38%), Positives = 35/49 (71%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALY++  +EPG+L+F +GD+I +  + D++W+HGE+    G FP  ++
Sbjct: 4   KALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFV 52

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198281 cd10418, SH2_Src_Fyn_isoform_a_like, Src homology 2 (SH2) domain found in Fyn isoform a like proteins

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 59  DWYYGRITRADAER-LLSNKH-EGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
           +WY+G++ R DAER LLS  +  G FLIR SE++ G +SLS++       D V+H+K+ +
Sbjct: 4   EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 63

Query: 112 -DSSGKFFLWVVKFNSLNELVEYH 134
            D+ G +     +F +L +LV+++
Sbjct: 64  LDNGGYYITTRAQFETLQQLVQHY 87

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform a type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198281 cd10418, SH2_Src_Fyn_isoform_a_like, Src homology 2 (SH2) domain found in Fyn isoform a like proteins

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 238 DWYYGRITRADAER-LLSNKH-EGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 290
           +WY+G++ R DAER LLS  +  G FLIR SE++ G +SLS++       D V+H+K+ +
Sbjct: 4   EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 63

Query: 291 -DSSGKFFLWVVKFNSLNELVEYH 313
            D+ G +     +F +L +LV+++
Sbjct: 64  LDNGGYYITTRAQFETLQQLVQHY 87

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform a type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 54  EMKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
            +++  WY+G +TR  AE  LLSN  +G++L+R S    G FSLSV+  D V+HF V   
Sbjct: 2   LLQSLGWYHGNLTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHVEYT 61

Query: 113 SSGKFFLWVVKFNSLNELVEY 133
               F     +F+SL + V++
Sbjct: 62  GYS-FKFGFNEFSSLQDFVKH 81

DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 92

>gnl|CDD|198218 cd10355, SH2_DAPP1_BAM32_like, Src homology 2 domain found in dual adaptor for phosphotyrosine and 3-phosphoinositides ( DAPP1)/B lymphocyte adaptor molecule of 32 kDa (Bam32)-like proteins

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 233 EMKNHDWYYGRITRADAER-LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
            +++  WY+G +TR  AE  LLSN  +G++L+R S    G FSLSV+  D V+HF V   
Sbjct: 2   LLQSLGWYHGNLTRHAAEALLLSNGVDGSYLLRNSNEGTGLFSLSVRAKDSVKHFHVEYT 61

Query: 292 SSGKFFLWVVKFNSLNELVEY 312
               F     +F+SL + V++
Sbjct: 62  GYS-FKFGFNEFSSLQDFVKH 81

DAPP1/Bam32 contains a putative myristoylation site at its N-terminus, followed by a SH2 domain, and a pleckstrin homology (PH) domain at its C-terminus. DAPP1 could potentially be recruited to the cell membrane by any of these domains. Its putative myristoylation site could facilitate the interaction of DAPP1 with the lipid bilayer. Its SH2 domain may also interact with phosphotyrosine residues on membrane-associated proteins such as activated tyrosine kinase receptors. And finally its PH domain exhibits a high-affinity interaction with the PtdIns(3,4,5)P(3) PtdIns(3,4)P(2) second messengers produced at the cell membrane following the activation of PI 3-kinases. DAPP1 is thought to interact with both tyrosine phosphorylated proteins and 3-phosphoinositides and therefore may play a role in regulating the location and/or activity of such proteins(s) in response to agonists that elevate PtdIns(3,4,5)P(3) and PtdIns(3,4)P(2). This protein is likely to play an important role in triggering signal transduction pathways that lie downstream from receptor tyrosine kinases and PI 3-kinase. It is likely that DAPP1 functions as an adaptor to recruit other proteins to the plasma membrane in response to extracellular signals. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 92

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 57.7 bits (139), Expect = 3e-11
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           C V A+YD+T     EL F +G +I V ++ D  WW GEI    GLFP+ Y+
Sbjct: 1   CQVIAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYV 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 58.0 bits (140), Expect = 3e-11
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           C V  +YD+T Q   EL F +G +I V ++ D  WW GE+  + GLFP+ Y+
Sbjct: 1   CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYV 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           ++++H WY+GRI R  AE L+    EG FL+R S SSPGD+ L+ +      HFK+ R  
Sbjct: 2   DLRSHAWYHGRIPRQVAESLVQR--EGDFLVRDSLSSPGDYVLTCRWKGQPLHFKINRVV 59

Query: 114 SG 115
             
Sbjct: 60  LR 61

BCAR3 is part of a growing family of guanine nucleotide exchange factors is responsible for activation of Ras-family GTPases, including Sos1 and 2, GRF1 and 2, CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2, PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS, RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558 21262352 BCAR3 binds to the carboxy-terminus of BCAR1/p130Cas, a focal adhesion adapter protein. Over expression of BCAR1 (p130Cas) and BCAR3 induces estrogen independent growth in normally estrogen-dependent cell lines. They have been linked to resistance to anti-estrogens in breast cancer, Rac activation, and cell motility, though the BCAR3/p130Cas complex is not required for this activity in BCAR3. Many BCAR3-mediated signaling events in epithelial and mesenchymal cells are independent of p130Cas association. Structurally these proteins contain a single SH2 domain upstream of their RasGEF domain, which is responsible for the ability of BCAR3 to enhance p130Cas over-expression-induced migration. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 136

>gnl|CDD|198200 cd10337, SH2_BCAR3, Src homology 2 (SH2) domain in the Breast Cancer Anti-estrogen Resistance protein 3

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           ++++H WY+GRI R  AE L+    EG FL+R S SSPGD+ L+ +      HFK+ R  
Sbjct: 2   DLRSHAWYHGRIPRQVAESLVQR--EGDFLVRDSLSSPGDYVLTCRWKGQPLHFKINRVV 59

Query: 293 SG 294
             
Sbjct: 60  LR 61

BCAR3 is part of a growing family of guanine nucleotide exchange factors is responsible for activation of Ras-family GTPases, including Sos1 and 2, GRF1 and 2, CalDAG-GEF/GRP1-4, C3G, cAMP-GEF/Epac 1 and 2, PDZ-GEFs, MR-GEF, RalGDS family members, RalGPS, RasGEF, Smg GDS, and phospholipase C(epsilon). 12102558 21262352 BCAR3 binds to the carboxy-terminus of BCAR1/p130Cas, a focal adhesion adapter protein. Over expression of BCAR1 (p130Cas) and BCAR3 induces estrogen independent growth in normally estrogen-dependent cell lines. They have been linked to resistance to anti-estrogens in breast cancer, Rac activation, and cell motility, though the BCAR3/p130Cas complex is not required for this activity in BCAR3. Many BCAR3-mediated signaling events in epithelial and mesenchymal cells are independent of p130Cas association. Structurally these proteins contain a single SH2 domain upstream of their RasGEF domain, which is responsible for the ability of BCAR3 to enhance p130Cas over-expression-induced migration. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 136

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G ITR +AE LL+ K EG FL+R S  S   FS+S +      H ++   S+G+F  
Sbjct: 2   WYWGGITRYEAEELLAGKPEGTFLVRDSSDSRYLFSVSFRTYGRTLHARIEY-SNGRFSF 60

Query: 120 W-----VVKFNSLNELVEY 133
                 V +F  + EL+E+
Sbjct: 61  DSSDPSVPRFPCVVELIEH 79

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|198178 cd09923, SH2_SOCS_family, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) family

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY+G ITR +AE LL+ K EG FL+R S  S   FS+S +      H ++   S+G+F  
Sbjct: 2   WYWGGITRYEAEELLAGKPEGTFLVRDSSDSRYLFSVSFRTYGRTLHARIEY-SNGRFSF 60

Query: 299 W-----VVKFNSLNELVEY 312
                 V +F  + EL+E+
Sbjct: 61  DSSDPSVPRFPCVVELIEH 79

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 81

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALY F PQE  +L  + GD + V D S++ WW G+ G R G FPA ++
Sbjct: 4   ALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 57.3 bits (138), Expect = 4e-11
 Identities = 32/77 (41%), Positives = 38/77 (49%), Gaps = 25/77 (32%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A YDF      EL F+RGD++ V                         LN E D NWY+A
Sbjct: 5   AKYDFKATADDELSFKRGDILKV-------------------------LNEECDQNWYKA 39

Query: 219 ELDGKEGLIPSNYIEMK 235
           EL+GK+G IP NYIEMK
Sbjct: 40  ELNGKDGFIPKNYIEMK 56

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V ALYD+T  +  EL F+ GD+I VT ++D  W+ G +    GLFP  Y+
Sbjct: 2   VVALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYV 51

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G+++R DAE LL    +G FL+R S ++PG + L+   +   +H  +L D  G    
Sbjct: 9   WYHGKMSRRDAESLLQT--DGDFLVRESTTTPGQYVLTGMQNGQPKHL-LLVDPEGVVRT 65

Query: 120 WVVKFNSLNELVEYHRT---ASVSRSQDVKLRDMVP 152
               F S++ L+ YH T     +S   ++ LR  V 
Sbjct: 66  KDRVFESISHLINYHVTNGLPIISEGSELHLRRPVR 101

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198179 cd09925, SH2_SHC, Src homology 2 (SH2) domain found in SH2 adaptor protein C (SHC)

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY+G+++R DAE LL    +G FL+R S ++PG + L+   +   +H  +L D  G    
Sbjct: 9   WYHGKMSRRDAESLLQT--DGDFLVRESTTTPGQYVLTGMQNGQPKHL-LLVDPEGVVRT 65

Query: 299 WVVKFNSLNELVEYHRT---ASVSRSQDVKLRDMVP 331
               F S++ L+ YH T     +S   ++ LR  V 
Sbjct: 66  KDRVFESISHLINYHVTNGLPIISEGSELHLRRPVR 101

SHC is involved in a wide variety of pathways including regulating proliferation, angiogenesis, invasion and metastasis, and bone metabolism. An adapter protein, SHC has been implicated in Ras activation following the stimulation of a number of different receptors, including growth factors [insulin, epidermal growth factor (EGF), nerve growth factor, and platelet derived growth factor (PDGF)], cytokines [interleukins 2, 3, and 5], erythropoietin, and granulocyte/macrophage colony-stimulating factor, and antigens [T-cell and B-cell receptors]. SHC has been shown to bind to tyrosine-phosphorylated receptors, and receptor stimulation leads to tyrosine phosphorylation of SHC. Upon phosphorylation, SHC interacts with another adapter protein, Grb2, which binds to the Ras GTP/GDP exchange factor mSOS which leads to Ras activation. SHC is composed of an N-terminal domain that interacts with proteins containing phosphorylated tyrosines, a (glycine/proline)-rich collagen-homology domain that contains the phosphorylated binding site, and a C-terminal SH2 domain. SH2 has been shown to interact with the tyrosine-phosphorylated receptors of EGF and PDGF and with the tyrosine-phosphorylated C chain of the T-cell receptor, providing one of the mechanisms of T-cell-mediated Ras activation. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes

 Score = 58.5 bits (141), Expect = 5e-11
 Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 59  DWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
           +WY+G++ R DAERLL N     G FL+R SE++ G +SLS++       D V+H+K+ +
Sbjct: 4   EWYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKIRK 63

Query: 112 -DSSGKFFLWVVKFNSLNELVEYH 134
            D+ G +     +F++L +LV+++
Sbjct: 64  LDNGGYYITTRAQFDTLQKLVKHY 87

Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198229 cd10366, SH2_Src_Yes, Src homology 2 (SH2) domain found in Yes

 Score = 58.5 bits (141), Expect = 5e-11
 Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 238 DWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 290
           +WY+G++ R DAERLL N     G FL+R SE++ G +SLS++       D V+H+K+ +
Sbjct: 4   EWYFGKMGRKDAERLLLNPGNQRGIFLVRESETTKGAYSLSIRDWDEVRGDNVKHYKIRK 63

Query: 291 -DSSGKFFLWVVKFNSLNELVEYH 313
            D+ G +     +F++L +LV+++
Sbjct: 64  LDNGGYYITTRAQFDTLQKLVKHY 87

Yes is a member of the Src non-receptor type tyrosine kinase family of proteins. Yes is the cellular homolog of the Yamaguchi sarcoma virus oncogene. In humans it is encoded by the YES1 gene which maps to chromosome 18 and is in close proximity to thymidylate synthase. A corresponding Yes pseudogene has been found on chromosome 22. YES1 has been shown to interact with Janus kinase 2, CTNND1,RPL10, and Occludin. Yes1 has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 60  WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL--RDSSG 115
           W++G I+R +A RL+  +   +G FL+R S+S+PG F LS+K    ++H++++   D   
Sbjct: 7   WFHGGISRDEAARLIRQQGLVDGVFLVRESQSNPGAFVLSLKHGQKIKHYQIIPIEDEGQ 66

Query: 116 KFFLW---VVKFNSLNELVEYHR 135
            +F     V KF  L +LVE+++
Sbjct: 67  WYFTLDDGVTKFYDLLQLVEFYQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198197 cd09944, SH2_Grb7_family, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 239 WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL--RDSSG 294
           W++G I+R +A RL+  +   +G FL+R S+S+PG F LS+K    ++H++++   D   
Sbjct: 7   WFHGGISRDEAARLIRQQGLVDGVFLVRESQSNPGAFVLSLKHGQKIKHYQIIPIEDEGQ 66

Query: 295 KFFLW---VVKFNSLNELVEYHR 314
            +F     V KF  L +LVE+++
Sbjct: 67  WYFTLDDGVTKFYDLLQLVEFYQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. There are 3 members of the Grb7 family of proteins: Grb7, Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR). Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 56.8 bits (137), Expect = 8e-11
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           E    A +D+T +   EL F+RGDV+ +  ++   WW GE    +GL P  YI
Sbjct: 1   EVEAVACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGEHNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 56.5 bits (137), Expect = 9e-11
 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 25/78 (32%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           +V ALYDF P EPG+L   +G+   V D S++HWW     AR                  
Sbjct: 1   IVVALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWR----ARDK---------------- 40

Query: 216 YRAELDGKEGLIPSNYIE 233
                +G EG IPSNY+ 
Sbjct: 41  -----NGNEGYIPSNYVT 53

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          + I  +D+ A  +DEL+F K Q++ +LN ED  +W++ EL+G+ GL PSNY+++
Sbjct: 2  QVIGMYDYTAQNDDELAFSKGQIINVLNKEDP-DWWKGELNGQVGLFPSNYVKL 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCS----- 101
           PSNY+    H W +  ++R  AE LL       G+FLIR SE+  G +SLSV+       
Sbjct: 1   PSNYVAKVYHGWLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSR 60

Query: 102 DGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 134
           D V+H+++ R  +G F++   + F  L ++V ++
Sbjct: 61  DSVKHYRIFRLDNGWFYISPRLTFQCLEDMVNHY 94

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198207 cd10344, SH2_SLAP, Src homology 2 domain found in Src-like adaptor proteins

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 228 PSNYIEMKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCS----- 280
           PSNY+    H W +  ++R  AE LL       G+FLIR SE+  G +SLSV+       
Sbjct: 1   PSNYVAKVYHGWLFEGLSREKAEELLMLPGNQVGSFLIRESETRRGCYSLSVRHRGSQSR 60

Query: 281 DGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           D V+H+++ R  +G F++   + F  L ++V ++
Sbjct: 61  DSVKHYRIFRLDNGWFYISPRLTFQCLEDMVNHY 94

SLAP belongs to the subfamily of adapter proteins that negatively regulate cellular signaling initiated by tyrosine kinases. It has a myristylated N-terminus, SH3 and SH2 domains with high homology to Src family tyrosine kinases, and a unique C-terminal tail, which is important for c-Cbl binding. SLAP negatively regulates platelet-derived growth factor (PDGF)-induced mitogenesis in fibroblasts and regulates F-actin assembly for dorsal ruffles formation. c-Cbl mediated SLAP inhibition towards actin remodeling. Moreover, SLAP enhanced PDGF-induced c-Cbl phosphorylation by SFK. In contrast, SLAP mitogenic inhibition was not mediated by c-Cbl, but it rather involved a competitive mechanism with SFK for PDGF-receptor (PDGFR) association and mitogenic signaling. Accordingly, phosphorylation of the Src mitogenic substrates Stat3 and Shc were reduced by SLAP. Thus, we concluded that SLAP regulates PDGFR signaling by two independent mechanisms: a competitive mechanism for PDGF-induced Src mitogenic signaling and a non-competitive mechanism for dorsal ruffles formation mediated by c-Cbl. SLAP is a hematopoietic adaptor containing Src homology (SH)3 and SH2 motifs and a unique carboxy terminus. Unlike c-Src, SLAP lacks a tyrosine kinase domain. Unlike c-Src, SLAP does not impact resorptive function of mature osteoclasts but induces their early apoptosis. SLAP negatively regulates differentiation of osteoclasts and proliferation of their precursors. Conversely, SLAP decreases osteoclast death by inhibiting activation of caspase 3. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFP 202
            + L+D+  +   EL  R GD++T+  +   D+ WW GE+  ++G+FP
Sbjct: 2   ARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFP 49

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A +D+ A   DELSF +  +L I +  D  NW++A   GK GLIPSNY+E
Sbjct: 4  ALYDYEAQHPDELSFEEGDLLYISDKSDP-NWWKATCGGKTGLIPSNYVE 52

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALY +  Q+  EL F  GD+I +       WW G +  ++GLFP  Y+
Sbjct: 2   CKALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYV 51

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
             ALYDFT +   +L F+RGD I VT+  D  W  G +  R+G+FP  +
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V AL+ +  Q P +L FR GD I V    ++ W  G    R G+FP  ++
Sbjct: 2   VVALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFV 51

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 8/88 (9%)

Query: 59  DWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           +W++  I+R DAER  L      G+F+IR SE++ G +SLSV+  D      V+H+K+  
Sbjct: 4   EWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHYKIRT 63

Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++     F++L ELV++++  +
Sbjct: 64  LDNGGFYISPRSTFSTLQELVDHYKKGN 91

HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198226 cd10363, SH2_Src_HCK, Src homology 2 (SH2) domain found in HCK

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 8/88 (9%)

Query: 238 DWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           +W++  I+R DAER  L      G+F+IR SE++ G +SLSV+  D      V+H+K+  
Sbjct: 4   EWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPQHGDTVKHYKIRT 63

Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++     F++L ELV++++  +
Sbjct: 64  LDNGGFYISPRSTFSTLQELVDHYKKGN 91

HCK is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in hemopoietic cells. HCK is proposed to couple the Fc receptor to the activation of the respiratory burst. It may also play a role in neutrophil migration and in the degranulation of neutrophils. It has two different translational starts that have different subcellular localization. HCK has been shown to interact with BCR gene, ELMO1 Cbl gene, RAS p21 protein activator 1, RASA3, Granulocyte colony-stimulating factor receptor, ADAM15 and RAPGEF1. Like the other members of the Src family the SH2 domain in addition to binding the target, also plays an autoinhibitory role by binding to its C-terminal tail. In general SH2 domains are involved in signal transduction. HCK has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198213 cd10350, SH2_SH2D4A, Src homology 2 domain found in the SH2 domain containing protein 4A (SH2D4A)

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
           S+ I      W++G +T   A  LL +   G+FLIRVSE   G ++LS    +G +HF +
Sbjct: 3   SDTIA----PWFHGILTLKKANELLLSTMPGSFLIRVSEKIKG-YALSYLSEEGCKHFLI 57

Query: 110 LRDSSGKFFLWV--VKFNSLNELVEYHRTASVS 140
              +    FL V  ++  +L +LVEYH+   ++
Sbjct: 58  DASADSYSFLGVDQLQHATLADLVEYHKEEPIT 90

SH2D4A contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198213 cd10350, SH2_SH2D4A, Src homology 2 domain found in the SH2 domain containing protein 4A (SH2D4A)

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
           S+ I      W++G +T   A  LL +   G+FLIRVSE   G ++LS    +G +HF +
Sbjct: 3   SDTIA----PWFHGILTLKKANELLLSTMPGSFLIRVSEKIKG-YALSYLSEEGCKHFLI 57

Query: 289 LRDSSGKFFLWV--VKFNSLNELVEYHRTASVS 319
              +    FL V  ++  +L +LVEYH+   ++
Sbjct: 58  DASADSYSFLGVDQLQHATLADLVEYHKEEPIT 90

SH2D4A contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALYD+  QE  EL F+ GD++T + +  +Q W  G +  R GL+PA Y+
Sbjct: 2   VRALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYV 52

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 9/85 (10%)

Query: 58  HDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--KCSDG--VQHFKVLRD 112
           ++WY G ++R  AE LL  +  EG F++R S S+ G +++S+  K      V+H+ + ++
Sbjct: 6   YEWYVGDMSRQRAESLLKQEDKEGCFVVRNS-STKGLYTVSLFTKVPGSPHVKHYHIKQN 64

Query: 113 SSGKFFLWVVK--FNSLNELVEYHR 135
           +  +F+L   K  F ++ EL+ YH+
Sbjct: 65  ARSEFYL-AEKHCFETIPELINYHQ 88

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198188 cd09934, SH2_Tec_family, Src homology 2 (SH2) domain found in Tec-like proteins

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 9/85 (10%)

Query: 237 HDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--KCSDG--VQHFKVLRD 291
           ++WY G ++R  AE LL  +  EG F++R S S+ G +++S+  K      V+H+ + ++
Sbjct: 6   YEWYVGDMSRQRAESLLKQEDKEGCFVVRNS-STKGLYTVSLFTKVPGSPHVKHYHIKQN 64

Query: 292 SSGKFFLWVVK--FNSLNELVEYHR 314
           +  +F+L   K  F ++ EL+ YH+
Sbjct: 65  ARSEFYL-AEKHCFETIPELINYHQ 88

The Tec protein tyrosine kinase is the founding member of a family that includes Btk, Itk, Bmx, and Txk. The members have a PH domain, a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is involved in B-cell receptor signaling with mutations in Btk responsible for X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency (xid) in mice. Itk is involved in T-cell receptor signaling. Tec is expressed in both T and B cells, and is thought to function in activated and effector T lymphocytes to induce the expression of genes regulated by NFAT transcription factors. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL 207
           ALY F   E  +L+F  G+ ITV D S++ WW G+IG + G FP  +I+
Sbjct: 4   ALYRFKALEKDDLDFHPGERITVIDDSNEEWWRGKIGEKTGYFPMNFII 52

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198252 cd10389, SH2_SHB, Src homology 2 domain found in SH2 domain-containing adapter protein B (SHB)

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G I+R DAE LL    E ++L+R S++S  D+SLS+K + G  H K L  +  K+ L
Sbjct: 3   WYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMK-LAKTKEKYVL 61

Query: 120 W--VVKFNSLNELVEYHRT 136
                 F+S+ E++ Y+ T
Sbjct: 62  GQNSPPFDSVPEVIHYYTT 80

SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198252 cd10389, SH2_SHB, Src homology 2 domain found in SH2 domain-containing adapter protein B (SHB)

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY+G I+R DAE LL    E ++L+R S++S  D+SLS+K + G  H K L  +  K+ L
Sbjct: 3   WYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMK-LAKTKEKYVL 61

Query: 299 W--VVKFNSLNELVEYHRT 315
                 F+S+ E++ Y+ T
Sbjct: 62  GQNSPPFDSVPEVIHYYTT 80

SHB functions in generating signaling compounds in response to tyrosine kinase activation. SHB contains proline-rich motifs, a phosphotyrosine binding (PTB) domain, tyrosine phosphorylation sites, and a SH2 domain. SHB mediates certain aspects of platelet-derived growth factor (PDGF) receptor-, fibroblast growth factor (FGF) receptor-, neural growth factor (NGF) receptor TRKA-, T cell receptor-, interleukin-2 (IL-2) receptor- and focal adhesion kinase- (FAK) signaling. SRC-like FYN-Related Kinase FRK/RAK (also named BSK/IYK or GTK) and SHB regulate apoptosis, proliferation and differentiation. SHB promotes apoptosis and is also required for proper mitogenicity, spreading and tubular morphogenesis in endothelial cells. SHB also plays a role in preventing early cavitation of embryoid bodies and reduces differentiation to cells expressing albumin, amylase, insulin and glucagon. SHB is a multifunctional protein that has difference responses in different cells under various conditions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQH----WWHGEIGARKGLFPA 203
           LV+ALYD+  Q   EL F  G +I +  + D      WW GE   R G+FP+
Sbjct: 1   LVRALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPS 52

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          EA AK++FNA    ELSFRK  V+ +    D+ NWY   + G++G+ P +Y++
Sbjct: 1  EARAKYNFNADTGVELSFRKGDVITLTRRVDE-NWYEGRIGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           E+K+  WY+G ++  DAE++LSNK +G+FL+R S      FSLS +    V H ++ +  
Sbjct: 6   ELKDCGWYWGPMSWEDAEKVLSNKPDGSFLVRDSSDDRYIFSLSFRSQGSVHHTRIEQY- 64

Query: 114 SGKFFLW-----VVKFNSLNELVE 132
            G F L      V +  SL E +E
Sbjct: 65  QGTFSLGSRNKFVDRSQSLVEFIE 88

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198251 cd10388, SH2_SOCS7, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           E+K+  WY+G ++  DAE++LSNK +G+FL+R S      FSLS +    V H ++ +  
Sbjct: 6   ELKDCGWYWGPMSWEDAEKVLSNKPDGSFLVRDSSDDRYIFSLSFRSQGSVHHTRIEQY- 64

Query: 293 SGKFFLW-----VVKFNSLNELVE 311
            G F L      V +  SL E +E
Sbjct: 65  QGTFSLGSRNKFVDRSQSLVEFIE 88

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL 207
           A +D+T +   EL F++GD +T+  +    WW G++  + GL P  YI 
Sbjct: 4   AQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQLNGQDGLVPHKYIT 52

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 54.5 bits (132), Expect = 5e-10
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNY 52
          +A +D+ A  +D+LSF+K   L+IL+  D  +W+ A     GKEG IPSNY
Sbjct: 3  VALYDYEARTDDDLSFKKGDRLQILDDSDG-DWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             LYD+T QE  EL   +GDV+ V ++ +  WW  E   +KGL P TY+
Sbjct: 3   SVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYL 51

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 54.3 bits (130), Expect = 5e-10
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALYDF   E  EL F+ G++I V D SD +WW GE     GLFP+ ++
Sbjct: 4   VRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 53.9 bits (129), Expect = 8e-10
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALY ++  EPG+L F  G+ I VT + D  WW G I  R G+FP+ Y+
Sbjct: 4   ALYPYSSSEPGDLTFNEGEEILVTQK-DGEWWTGSIEDRTGIFPSNYV 50

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|198219 cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases A and C (ShkA and ShkC)

 Score = 55.7 bits (134), Expect = 8e-10
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLRDSSGKFF 118
           W++G I+ +++E  L+ K EG FL+R S S PG +++S    +G + H ++ R   GKF 
Sbjct: 12  WFHGDISTSESENRLNGKPEGTFLVRFSTSEPGAYTISKVSKNGGISHQRIHR-PGGKFQ 70

Query: 119 LWVVKFNSLNELV 131
           +   K+ S+ EL+
Sbjct: 71  VNNSKYLSVKELI 83

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkA and shkC. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 113

>gnl|CDD|198219 cd10356, SH2_ShkA_ShkC, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases A and C (ShkA and ShkC)

 Score = 55.7 bits (134), Expect = 8e-10
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLRDSSGKFF 297
           W++G I+ +++E  L+ K EG FL+R S S PG +++S    +G + H ++ R   GKF 
Sbjct: 12  WFHGDISTSESENRLNGKPEGTFLVRFSTSEPGAYTISKVSKNGGISHQRIHR-PGGKFQ 70

Query: 298 LWVVKFNSLNELV 310
           +   K+ S+ EL+
Sbjct: 71  VNNSKYLSVKELI 83

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkA and shkC. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 113

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 53.6 bits (129), Expect = 9e-10
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYIL 207
           + L+D+ P  P EL  ++GDVI V  +   D+ WW GE+  R+G FP  +++
Sbjct: 3   RVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVM 54

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 60  WYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           ++YG ITR +AE  L  +   +G FL+R S  S G + LSV       H+ + R  +G +
Sbjct: 3   FFYGSITREEAEEYLKLAGMSDGLFLLRQSLRSLGGYVLSVCHGRKFHHYTIERQLNGTY 62

Query: 118 FLWVVK-FNSLNELVEYHRTAS 138
            +   K      EL EYH T  
Sbjct: 63  AIAGGKAHCGPAELCEYHSTDL 84

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the N-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|198191 cd09938, SH2_N-SH2_Zap70_Syk_like, N-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 239 WYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           ++YG ITR +AE  L  +   +G FL+R S  S G + LSV       H+ + R  +G +
Sbjct: 3   FFYGSITREEAEEYLKLAGMSDGLFLLRQSLRSLGGYVLSVCHGRKFHHYTIERQLNGTY 62

Query: 297 FLWVVK-FNSLNELVEYHRTAS 317
            +   K      EL EYH T  
Sbjct: 63  AIAGGKAHCGPAELCEYHSTDL 84

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the N-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 104

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 28/81 (34%)

Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
           EC+  A Y+F      +L F++GD++T+   +                          D 
Sbjct: 3   ECI--AKYNFNGASEEDLPFKKGDILTIVAVT-------------------------KDP 35

Query: 214 NWYRAE-LDGKEGLIPSNYIE 233
           NWY+A+  DG+EG+IP+NY++
Sbjct: 36  NWYKAKNKDGREGMIPANYVQ 56

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|198206 cd10343, SH2_SHIP, Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 60  WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           WY+G ITR+ AE LLS    +G+FL+R SES  G ++L V   + V  +++L ++  K  
Sbjct: 5   WYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQNCVHTYRILPNAEDKLS 64

Query: 119 LW------VVKFNSLNELVEYHR 135
           +       V  F +L EL+E+++
Sbjct: 65  VQASEGVPVRFFTTLPELIEFYQ 87

The SH2-containing inositol-5'-phosphatase, SHIP (also called SHIP1/SHIP1a), is a hematopoietic-restricted phosphatidylinositide phosphatase that translocates to the plasma membrane after extracellular stimulation and hydrolyzes the phosphatidylinositol-3-kinase (PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated signaling and represses the proliferation, differentiation, survival, activation, and migration of hematopoietic cells. PIP3 recruits lipid-binding pleckstrin homology(PH) domain-containing proteins to the inner wall of the plasma membrane and activates them. PH domain-containing downstream effectors include the survival/proliferation enhancing serine/threonine kinase, Akt (protein kinase B), the tyrosine kinase, Btk, the regulator of protein translation, S6K, and the Rac and cdc42 guanine nucleotide exchange factor, Vav. SHIP is believed to act as a tumor suppressor during leukemogenesis and lymphomagenesis, and may play a role in activating the immune system to combat cancer. SHIP contains an N-terminal SH2 domain, a centrally located phosphatase domain that specifically hydrolyzes the 5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5- tetrakisphosphate (IP4), a C2 domain, that is an allosteric activating site when bound by SHIP's enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind proteins with a phosphotyrosine binding (Shc, Dok 1, Dok 2) or an SH2 (p85a, SHIP2) domain; and a proline-rich domain consisting of four PxxP motifs that bind a subset of SH3-containing proteins including Grb2, Src, Lyn, Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds to the tyrosine phosphorylated forms of Shc, SHP-2, Doks, Gabs, CD150, platelet-endothelial cell adhesion molecule, Cas, c-Cbl, immunoreceptor tyrosine-based inhibitory motifs (ITIMs), and immunoreceptor tyrosine-based activation motifs (ITAMs). The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX(V/I), which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198206 cd10343, SH2_SHIP, Src homology 2 (SH2) domain found in SH2-containing inositol-5'-phosphatase (SHIP) and SLAM-associated protein (SAP)

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           WY+G ITR+ AE LLS    +G+FL+R SES  G ++L V   + V  +++L ++  K  
Sbjct: 5   WYHGNITRSKAEELLSKAGKDGSFLVRDSESVSGAYALCVLYQNCVHTYRILPNAEDKLS 64

Query: 298 LW------VVKFNSLNELVEYHR 314
           +       V  F +L EL+E+++
Sbjct: 65  VQASEGVPVRFFTTLPELIEFYQ 87

The SH2-containing inositol-5'-phosphatase, SHIP (also called SHIP1/SHIP1a), is a hematopoietic-restricted phosphatidylinositide phosphatase that translocates to the plasma membrane after extracellular stimulation and hydrolyzes the phosphatidylinositol-3-kinase (PI3K)-generated second messenger PI-3,4,5-P3 (PIP3) to PI-3,4-P2. As a result, SHIP dampens down PIP3 mediated signaling and represses the proliferation, differentiation, survival, activation, and migration of hematopoietic cells. PIP3 recruits lipid-binding pleckstrin homology(PH) domain-containing proteins to the inner wall of the plasma membrane and activates them. PH domain-containing downstream effectors include the survival/proliferation enhancing serine/threonine kinase, Akt (protein kinase B), the tyrosine kinase, Btk, the regulator of protein translation, S6K, and the Rac and cdc42 guanine nucleotide exchange factor, Vav. SHIP is believed to act as a tumor suppressor during leukemogenesis and lymphomagenesis, and may play a role in activating the immune system to combat cancer. SHIP contains an N-terminal SH2 domain, a centrally located phosphatase domain that specifically hydrolyzes the 5'-phosphate from PIP3, PI-4,5-P2 and inositol-1,3,4,5- tetrakisphosphate (IP4), a C2 domain, that is an allosteric activating site when bound by SHIP's enzymatic product, PI-3,4-P2; 2 NPXY motifs that bind proteins with a phosphotyrosine binding (Shc, Dok 1, Dok 2) or an SH2 (p85a, SHIP2) domain; and a proline-rich domain consisting of four PxxP motifs that bind a subset of SH3-containing proteins including Grb2, Src, Lyn, Hck, Abl, PLCg1, and PIAS1. The SH2 domain of SHIP binds to the tyrosine phosphorylated forms of Shc, SHP-2, Doks, Gabs, CD150, platelet-endothelial cell adhesion molecule, Cas, c-Cbl, immunoreceptor tyrosine-based inhibitory motifs (ITIMs), and immunoreceptor tyrosine-based activation motifs (ITAMs). The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX(V/I), which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV+A ++F      EL F +GD+ITVT   +  WW G +  + G FP+ Y+
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           +A+YDF  Q   EL F++GD + +  + DQ+W+ GE   R G+FP +Y+  +
Sbjct: 4   RAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKL 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198265 cd10402, SH2_C-SH2_Zap70, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70)

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 60  WYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           WY+G I R +AER L    + +G FL+R  + S G ++LS+     V H+++ +D SGK+
Sbjct: 12  WYHGSIARDEAERRLYSGAQPDGKFLLRERKES-GTYALSLVYGKTVYHYRIDQDKSGKY 70

Query: 118 FL-WVVKFNSLNELVEY 133
            +    KF++L +LVEY
Sbjct: 71  SIPEGTKFDTLWQLVEY 87

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 105

>gnl|CDD|198265 cd10402, SH2_C-SH2_Zap70, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70)

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 239 WYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           WY+G I R +AER L    + +G FL+R  + S G ++LS+     V H+++ +D SGK+
Sbjct: 12  WYHGSIARDEAERRLYSGAQPDGKFLLRERKES-GTYALSLVYGKTVYHYRIDQDKSGKY 70

Query: 297 FL-WVVKFNSLNELVEY 312
            +    KF++L +LVEY
Sbjct: 71  SIPEGTKFDTLWQLVEY 87

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 105

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 58  HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           H WY G + RA AE +L+N+ +G +L+R       +F++S+K +  V+H K++  ++   
Sbjct: 5   HLWYAGPMERAGAESILANRSDGTYLVRQRVKDAAEFAISIKYNVEVKHIKIM--TAEGL 62

Query: 118 FLWVVK--FNSLNELVEYHRTASV 139
           +    K  F  L ELVE+++  S+
Sbjct: 63  YRITEKKAFRGLTELVEFYQQNSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198268 cd10405, SH2_Vav1, Src homology 2 (SH2) domain found in the Vav1 proteins

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           H WY G + RA AE +L+N+ +G +L+R       +F++S+K +  V+H K++  ++   
Sbjct: 5   HLWYAGPMERAGAESILANRSDGTYLVRQRVKDAAEFAISIKYNVEVKHIKIM--TAEGL 62

Query: 297 FLWVVK--FNSLNELVEYHRTASV 318
           +    K  F  L ELVE+++  S+
Sbjct: 63  YRITEKKAFRGLTELVEFYQQNSL 86

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav1 plays a role in T-cell and B-cell development and activation. It has been identified as the specific binding partner of Nef proteins from HIV-1, resulting in morphological changes, cytoskeletal rearrangements, and the JNK/SAPK signaling cascade, leading to increased levels of viral transcription and replication. Vav1 has been shown to interact with Ku70, PLCG1, Lymphocyte cytosolic protein 2, Janus kinase 2, SIAH2, S100B, Abl gene, ARHGDIB, SHB, PIK3R1, PRKCQ, Grb2, MAPK1, Syk, Linker of activated T cells, Cbl gene and EZH2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 20/50 (40%), Positives = 26/50 (52%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALYD+   E  EL F   D I   +  D  WW GE    +GLFP+ Y+
Sbjct: 2   AKALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYV 51

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          EA A+ D+   +E ELSF+K   L +     D +W+R +L+G++GL+P  YI
Sbjct: 1  EATAQFDYTGRSERELSFKKGDSLTLYRQVSD-DWWRGQLNGQDGLVPHKYI 51

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198216 cd10353, SH2_Nterm_RasGAP, N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 60  WYYGRITRADAE-RLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           WY+GR+ R  AE RL      G++LIR S+  PG F LS     GV HF+++    G ++
Sbjct: 21  WYHGRLDRTIAEERLRQAGKLGSYLIRESDRRPGSFVLSFLSRTGVNHFRIIA-MCGDYY 79

Query: 119 LWVVKFNSLNELVEYHRTAS 138
           +   +F+SL++L+ Y+   S
Sbjct: 80  IGGRRFSSLSDLIGYYSHVS 99

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general the longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the N-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198216 cd10353, SH2_Nterm_RasGAP, N-terminal Src homology 2 (SH2) domain found in Ras GTPase-activating protein 1 (GAP)

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 239 WYYGRITRADAE-RLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           WY+GR+ R  AE RL      G++LIR S+  PG F LS     GV HF+++    G ++
Sbjct: 21  WYHGRLDRTIAEERLRQAGKLGSYLIRESDRRPGSFVLSFLSRTGVNHFRIIA-MCGDYY 79

Query: 298 LWVVKFNSLNELVEYHRTAS 317
           +   +F+SL++L+ Y+   S
Sbjct: 80  IGGRRFSSLSDLIGYYSHVS 99

RasGAP is part of the GAP1 family of GTPase-activating proteins. The protein is located in the cytoplasm and stimulates the GTPase activity of normal RAS p21, but not its oncogenic counterpart. Acting as a suppressor of RAS function, the protein enhances the weak intrinsic GTPase activity of RAS proteins resulting in RAS inactivation, thereby allowing control of cellular proliferation and differentiation. Mutations leading to changes in the binding sites of either protein are associated with basal cell carcinomas. Alternative splicing results in two isoforms. The shorter isoform which lacks the N-terminal hydrophobic region, has the same activity, and is expressed in placental tissues. In general the longer isoform contains 2 SH2 domains, a SH3 domain, a pleckstrin homology (PH) domain, and a calcium-dependent phospholipid-binding C2 domain. The C-terminus contains the catalytic domain of RasGap which catalyzes the activation of Ras by hydrolyzing GTP-bound active Ras into an inactive GDP-bound form of Ras. This model contains the N-terminal SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 59  DWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
           +WY+G++ R DAER LLS     G FLIR SE++ G +SLS++       D V+H+K+ +
Sbjct: 4   EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 63

Query: 112 -DSSGKFFLWVVKFNSLNELVEYH 134
            D+ G +     +F +L +LV+++
Sbjct: 64  LDNGGYYITTRAQFETLQQLVQHY 87

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198231 cd10368, SH2_Src_Fyn, Src homology 2 (SH2) domain found in Fyn

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 238 DWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 290
           +WY+G++ R DAER LLS     G FLIR SE++ G +SLS++       D V+H+K+ +
Sbjct: 4   EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 63

Query: 291 -DSSGKFFLWVVKFNSLNELVEYH 313
            D+ G +     +F +L +LV+++
Sbjct: 64  LDNGGYYITTRAQFETLQQLVQHY 87

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V ALYD+T     EL   RGD+I V  + + +WW G +   ++G FPA Y+
Sbjct: 2   VVALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +AL ++    PG+L+F +GDVI +  + D++W+ GEI    G+FPA+ +
Sbjct: 4   KALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGEINGVSGIFPASSV 52

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYI 206
           + +ALYDF   EP  L F  G+   + +RS+ HWW         G  PA Y+
Sbjct: 1   MYRALYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTNHSGETGYVPANYV 52

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-----ARKGLFPATY 205
           V ALYDFTP+   +L F+ GD+I V ++    WW G I       ++G FP+ Y
Sbjct: 2   VVALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in cancer-related signaling adaptor protein CRK

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           WY+G ++R +A+ LL  +  G FL+R S + PGD+ LSV  +  V H+
Sbjct: 9   WYFGPMSRQEAQELLQGQRHGVFLVRDSSTIPGDYVLSVSENSRVSHY 56

SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198180 cd09926, SH2_CRK_like, Src homology 2 domain found in cancer-related signaling adaptor protein CRK

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           WY+G ++R +A+ LL  +  G FL+R S + PGD+ LSV  +  V H+
Sbjct: 9   WYFGPMSRQEAQELLQGQRHGVFLVRDSSTIPGDYVLSVSENSRVSHY 56

SH2 domain in the CRK proteins. CRKI (SH2-SH3) and CRKII (SH2-SH3-SH3) are splicing isoforms of the oncoprotein CRK. CRKs regulate transcription and cytoskeletal reorganization for cell growth and motility by linking tyrosine kinases to small G proteins. The SH2 domain of CRK associates with tyrosine-phosphorylated receptors or components of focal adhesions, such as p130Cas and paxillin. CRK transmits signals to small G proteins through effectors that bind its SH3 domain, such as C3G, the guanine-nucleotide exchange factor (GEF) for Rap1 and R-Ras, and DOCK180, the GEF for Rac6. The binding of p130Cas to the CRK-C3G complex activates Rap1, leading to regulation of cell adhesion, and activates R-Ras, leading to JNK-mediated activation of cell proliferation, whereas the binding of CRK DOCK180 induces Rac1-mediated activation of cellular migration. The activity of the different splicing isoforms varies greatly with CRKI displaying substantial transforming activity, CRKII less so, and phosphorylated CRKII with no biological activity whatsoever. CRKII has a linker region with a phosphorylated Tyr and an additional C-terminal SH3 domain. The phosphorylated Tyr creates a binding site for its SH2 domain which disrupts the association between CRK and its SH2 target proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYI 206
           ALYD+   E  E+ F  GD+IT  ++ D+ WW G     +KGLFPA Y+
Sbjct: 4   ALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYV 52

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A A++DF A    ELS ++  V+KI N +    W+R E++G+ G  PS Y+E
Sbjct: 2  AKARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
            ++  +WY+G I+R +    + +  +G FL+R + +  GD++L+++     +  K+    
Sbjct: 3   SLQEAEWYWGDISREEVNEKMRDTPDGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFH-R 61

Query: 114 SGKF-FLWVVKFNSLNELVEYHRTASVS---RSQDVKL 147
            GK+ F   + FNS+ EL+ Y+R  S++   R  DVKL
Sbjct: 62  DGKYGFSDPLTFNSVVELINYYRNNSLAEYNRKLDVKL 99

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|198195 cd09942, SH2_nSH2_p85_like, N-terminal Src homology 2 (nSH2) domain found in p85

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
            ++  +WY+G I+R +    + +  +G FL+R + +  GD++L+++     +  K+    
Sbjct: 3   SLQEAEWYWGDISREEVNEKMRDTPDGTFLVRDASTMKGDYTLTLRKGGNNKLIKIFH-R 61

Query: 293 SGKF-FLWVVKFNSLNELVEYHRTASVS---RSQDVKL 326
            GK+ F   + FNS+ EL+ Y+R  S++   R  DVKL
Sbjct: 62  DGKYGFSDPLTFNSVVELINYYRNNSLAEYNRKLDVKL 99

Phosphoinositide 3-kinases (PI3Ks) are essential for cell growth, migration, and survival. p110, the catalytic subunit, is composed of an adaptor-binding domain, a Ras-binding domain, a C2 domain, a helical domain, and a kinase domain. The regulatory unit is called p85 and is composed of an SH3 domain, a RhoGap domain, a N-terminal SH2 (nSH2) domain, an internal SH2 (iSH2) domain, and C-terminal (cSH2) domain. There are 2 inhibitory interactions between p110alpha and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110alpha and (2) p85 iSH2 domain with C2 domain of p110alpha. There are 3 inhibitory interactions between p110beta and p85 of P13K: (1) p85 nSH2 domain with the C2, helical, and kinase domains of p110beta, (2) p85 iSH2 domain with C2 domain of p110alpha, and (3) p85 cSH2 domain with the kinase domain of p110alpha. It is interesting to note that p110beta is oncogenic as a wild type protein while p110alpha lacks this ability. One explanation is the idea that the regulation of p110beta by p85 is unique because of the addition of inhibitory contacts from the cSH2 domain and the loss of contacts in the iSH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 110

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNME---DDMNWYRAELDGKE-GLIPSNYIE 54
           A A++DF A +EDELSFR    L++   E       W  A +DG++ GL+P+NY++
Sbjct: 1  VARAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYVK 57

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 51.5 bits (123), Expect = 5e-09
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           A+Y +   E G+L F++GDVI VT + D  WW G +G + G+FP+ Y+
Sbjct: 4   AMYTYESNEQGDLTFQQGDVILVT-KKDGDWWTGTVGDKTGVFPSNYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212744 cd11810, SH3_RUSC1_like, Src homology 3 domain of RUN and SH3 domain-containing proteins 1 and 2

 Score = 51.3 bits (123), Expect = 5e-09
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
           V+AL      + G+L FR+GD++ V  R D  W     G+ KGL P +Y
Sbjct: 2   VRALCHHVATDSGQLSFRKGDILRVIARVDDDWLLCTRGSTKGLVPLSY 50

RUSC1 and RUSC2, that were originally characterized in silico. They are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC2, also called Iporin, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain found in Fyn isoform b like proteins

 Score = 53.1 bits (127), Expect = 5e-09
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 8/83 (9%)

Query: 60  WYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR- 111
           WY+G++ R DAER LLS     G FLIR SE++ G +SLS++       D V+H+K+ + 
Sbjct: 5   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 112 DSSGKFFLWVVKFNSLNELVEYH 134
           D+ G +     +F +L +LV+++
Sbjct: 65  DNGGYYITTRAQFETLQQLVQHY 87

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198282 cd10419, SH2_Src_Fyn_isoform_b_like, Src homology 2 (SH2) domain found in Fyn isoform b like proteins

 Score = 53.1 bits (127), Expect = 5e-09
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 8/83 (9%)

Query: 239 WYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR- 290
           WY+G++ R DAER LLS     G FLIR SE++ G +SLS++       D V+H+K+ + 
Sbjct: 5   WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 64

Query: 291 DSSGKFFLWVVKFNSLNELVEYH 313
           D+ G +     +F +L +LV+++
Sbjct: 65  DNGGYYITTRAQFETLQQLVQHY 87

Fyn is a member of the Src non-receptor type tyrosine kinase family of proteins. This cd contains the SH2 domain found in Fyn isoform b type proteins. Fyn is involved in the control of cell growth and is required in the following pathways: T and B cell receptor signaling, integrin-mediated signaling, growth factor and cytokine receptor signaling, platelet activation, ion channel function, cell adhesion, axon guidance, fertilization, entry into mitosis, and differentiation of natural killer cells, oligodendrocytes and keratinocytes. The protein associates with the p85 subunit of phosphatidylinositol 3-kinase and interacts with the Fyn-binding protein. Alternatively spliced transcript variants encoding distinct isoforms exist. Fyn is primarily localized to the cytoplasmic leaflet of the plasma membrane. Tyrosine phosphorylation of target proteins by Fyn serves to either regulate target protein activity, and/or to generate a binding site on the target protein that recruits other signaling molecules. FYN has been shown to interact with a number of proteins including: BCAR1, Cbl, Janus kinase, nephrin, Sky, tyrosine kinase, Wiskott-Aldrich syndrome protein, and Zap-70. Fyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 51.5 bits (124), Expect = 5e-09
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           A+ D+  Q   E+  + G+V+ V +++D  WW+   G ++G  PA+Y+
Sbjct: 4   AIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYL 51

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           A  DF    +++L F+K ++L ++   ++  W     +GK G+IP  Y+E
Sbjct: 4  RALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYVE 54

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|199832 cd10417, SH2_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7)

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G ITR   E+LL +K  G+FLIR+S+ + G + LS + SD  +HF V+     + +L
Sbjct: 9   WFHGFITRKQTEQLLRDKALGSFLIRLSDRATG-YILSYRGSDRCRHF-VINQLRNRRYL 66

Query: 120 W---VVKFNSLNELVEYHRTASV 139
                   ++L ELV +++   +
Sbjct: 67  ISGDTSSHSTLAELVRHYQEVQL 89

SH2D7 contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|199832 cd10417, SH2_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 7 (SH2D7)

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G ITR   E+LL +K  G+FLIR+S+ + G + LS + SD  +HF V+     + +L
Sbjct: 9   WFHGFITRKQTEQLLRDKALGSFLIRLSDRATG-YILSYRGSDRCRHF-VINQLRNRRYL 66

Query: 299 W---VVKFNSLNELVEYHRTASV 318
                   ++L ELV +++   +
Sbjct: 67  ISGDTSSHSTLAELVRHYQEVQL 89

SH2D7 contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198227 cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain found in Lyn

 Score = 52.7 bits (126), Expect = 6e-09
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 8/88 (9%)

Query: 59  DWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           +W++  ITR DAER  L      GAFLIR SE+  G +SLSV+  D      ++H+K+  
Sbjct: 4   EWFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSYSLSVRDYDPQHGDVIKHYKIRS 63

Query: 112 -DSSGKFFLWVVKFNSLNELVEYHRTAS 138
            D+ G +    + F  +++++++++  S
Sbjct: 64  LDNGGYYISPRITFPCISDMIKHYQKQS 91

Lyn is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in the hematopoietic cells, in neural tissues, liver, and adipose tissue. There are two alternatively spliced forms of Lyn. Lyn plays an inhibitory role in myeloid lineage proliferation. Following engagement of the B cell receptors, Lyn undergoes rapid phosphorylation and activation, triggering a cascade of signaling events mediated by Lyn phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the receptor proteins, and subsequent recruitment and activation of other kinases including Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3 kinase. These kinases play critical roles in proliferation, Ca2+ mobilization and cell differentiation. Lyn plays an essential role in the transmission of inhibitory signals through phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based inhibitory motifs (ITIM) in regulatory proteins such as CD22, PIR-B and FC RIIb1. Their ITIM phosphorylation subsequently leads to recruitment and activation of phosphatases such as SHIP-1 and SHP-1 which further down modulate signaling pathways, attenuate cell activation and can mediate tolerance. Lyn also plays a role in the insulin signaling pathway. Activated Lyn phosphorylates insulin receptor substrate 1 (IRS1) leading to an increase in translocation of Glut-4 to the cell membrane and increased glucose utilization. It is the primary Src family member involved in signaling downstream of the B cell receptor. Lyn plays an unusual, 2-fold role in B cell receptor signaling; it is essential for initiation of signaling but is also later involved in negative regulation of the signal. Lyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198227 cd10364, SH2_Src_Lyn, Src homology 2 (SH2) domain found in Lyn

 Score = 52.7 bits (126), Expect = 6e-09
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 8/88 (9%)

Query: 238 DWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           +W++  ITR DAER  L      GAFLIR SE+  G +SLSV+  D      ++H+K+  
Sbjct: 4   EWFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSYSLSVRDYDPQHGDVIKHYKIRS 63

Query: 291 -DSSGKFFLWVVKFNSLNELVEYHRTAS 317
            D+ G +    + F  +++++++++  S
Sbjct: 64  LDNGGYYISPRITFPCISDMIKHYQKQS 91

Lyn is a member of the Src non-receptor type tyrosine kinase family of proteins and is expressed in the hematopoietic cells, in neural tissues, liver, and adipose tissue. There are two alternatively spliced forms of Lyn. Lyn plays an inhibitory role in myeloid lineage proliferation. Following engagement of the B cell receptors, Lyn undergoes rapid phosphorylation and activation, triggering a cascade of signaling events mediated by Lyn phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the receptor proteins, and subsequent recruitment and activation of other kinases including Syk, phospholipase C2 (PLC2) and phosphatidyl inositol-3 kinase. These kinases play critical roles in proliferation, Ca2+ mobilization and cell differentiation. Lyn plays an essential role in the transmission of inhibitory signals through phosphorylation of tyrosine residues within the immunoreceptor tyrosine-based inhibitory motifs (ITIM) in regulatory proteins such as CD22, PIR-B and FC RIIb1. Their ITIM phosphorylation subsequently leads to recruitment and activation of phosphatases such as SHIP-1 and SHP-1 which further down modulate signaling pathways, attenuate cell activation and can mediate tolerance. Lyn also plays a role in the insulin signaling pathway. Activated Lyn phosphorylates insulin receptor substrate 1 (IRS1) leading to an increase in translocation of Glut-4 to the cell membrane and increased glucose utilization. It is the primary Src family member involved in signaling downstream of the B cell receptor. Lyn plays an unusual, 2-fold role in B cell receptor signaling; it is essential for initiation of signaling but is also later involved in negative regulation of the signal. Lyn has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 51.3 bits (123), Expect = 7e-09
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMN-WYRAELDGKEGLIPSNYIE 54
          +A+A +DF      +L+F+K  ++ IL   D  N W+   + G+EG+ P+NY+E
Sbjct: 1  KAVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|199830 cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 2A and 7 (SH2D2A and SH2D7)

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G ITR +AERLL  K +G +L+R SES+   F LS +     +HF + +   G+  +
Sbjct: 2   WFHGFITRREAERLLEPKPQGCYLVRFSESAVT-FVLSYRSRTCCRHFLLAQLRDGRHVV 60

Query: 120 W--VVKFNSLNELVEYH 134
                    L +L+ ++
Sbjct: 61  LGEDSAHARLQDLLLHY 77

SH2D2A and SH7 both contain a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|199830 cd10349, SH2_SH2D2A_SH2D7, Src homology 2 domain found in the SH2 domain containing protein 2A and 7 (SH2D2A and SH2D7)

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G ITR +AERLL  K +G +L+R SES+   F LS +     +HF + +   G+  +
Sbjct: 2   WFHGFITRREAERLLEPKPQGCYLVRFSESAVT-FVLSYRSRTCCRHFLLAQLRDGRHVV 60

Query: 299 W--VVKFNSLNELVEYH 313
                    L +L+ ++
Sbjct: 61  LGEDSAHARLQDLLLHY 77

SH2D2A and SH7 both contain a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 77

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
               D+ AT  +ELS +K  V+K+L+ +D+  W+  E  G+ GL+PS+Y+E
Sbjct: 2  GRVIFDYVATDPNELSLKKGDVVKVLDKDDN-GWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGEIGARKGLFPATYI 206
           A YDF  ++  EL  + GDV+ + ++   Q WW GEI  R G FP+TY+
Sbjct: 4   ARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYV 52

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 25/77 (32%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
           V+AL+DF   +  +L F++G+++TV  + ++ WW+                N E      
Sbjct: 3   VRALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNAR--------------NSE------ 42

Query: 217 RAELDGKEGLIPSNYIE 233
                GK G+IP  Y+E
Sbjct: 43  -----GKTGMIPVPYVE 54

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 23/79 (29%)

Query: 157 VQALYDFTPQEPG-ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
            +ALYDFTP+ P  EL  ++GD++ V  ++D                      +  D  W
Sbjct: 2   CRALYDFTPENPEMELSLKKGDIVAVLSKTDP---------------------LGRDSEW 40

Query: 216 YRAEL-DGKEGLIPSNYIE 233
           ++    DG+ G  PSNY+E
Sbjct: 41  WKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V   +D+  +EP EL  + GD+IT   + ++ WW G +  ++G+FP  ++
Sbjct: 2   VIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFV 51

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A+A +D+ A  +DE+SF    ++  + M D+  W+R    GK GL P+NY+E+
Sbjct: 2  AVALYDYQAADDDEISFDPDDIITNIEMIDE-GWWRGVCRGKYGLFPANYVEL 53

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +AL DF   +  EL FR+ D+IT+  + D+H W GE+   +G FPA ++
Sbjct: 3   KALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFV 51

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198269 cd10406, SH2_Vav2, Src homology 2 (SH2) domain found in the Vav2 proteins

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 28/83 (33%), Positives = 44/83 (53%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W+ G + R   + LL +   G +LIR   +    F++S+K +D V+H KV+   +     
Sbjct: 7   WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 66

Query: 120 WVVKFNSLNELVEYHRTASVSRS 142
              KF SL ELVEY++  S+  S
Sbjct: 67  EAKKFESLLELVEYYQCHSLKES 89

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav2 is a GEF for RhoA, RhoB and RhoG and may activate Rac1 and Cdc42. Vav2 has been shown to interact with CD19 and Grb2. Alternatively spliced transcript variants encoding different isoforms have been found for Vav2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198269 cd10406, SH2_Vav2, Src homology 2 (SH2) domain found in the Vav2 proteins

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 28/83 (33%), Positives = 44/83 (53%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W+ G + R   + LL +   G +LIR   +    F++S+K +D V+H KV+   +     
Sbjct: 7   WFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHIT 66

Query: 299 WVVKFNSLNELVEYHRTASVSRS 321
              KF SL ELVEY++  S+  S
Sbjct: 67  EAKKFESLLELVEYYQCHSLKES 89

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav2 is a GEF for RhoA, RhoB and RhoG and may activate Rac1 and Cdc42. Vav2 has been shown to interact with CD19 and Grb2. Alternatively spliced transcript variants encoding different isoforms have been found for Vav2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVT-DRSDQHWWHGE-IGARKGLFPATYI 206
            V+ALYDF  Q  GEL  R G+V+T+T       W  G       GLFP++Y+
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYV 53

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A +DFN     EL FR+  ++ +L+   D +W++ EL G+ G+ P+NY++
Sbjct: 4  ALYDFNPQEPGELEFRRGDIITVLD-SSDPDWWKGELRGRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITV-TDRSDQHWWHGEIGARKGLFPATY 205
           V+ALYD+  Q   E+  R GD I V        W +GEI   KGLFP +Y
Sbjct: 2   VEALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            V AL+ +   +P +LEF++GDVI V  + ++ W  G+   + G+FP+ ++
Sbjct: 1   QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFV 51

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYI 206
           V+ALYD+  Q P EL F +  +IT  ++ D  WW G+ G +K   FPA Y+
Sbjct: 2   VKALYDYRAQRPDELSFCKHAIITNVEKEDGGWWRGDYGGKKQKWFPANYV 52

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALYD+  +   E+ F   + IT  +  D+ WW G     +GLFPA Y+
Sbjct: 5   ALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYV 52

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
           + A +D++ Q P +LEF +GD I +    +Q W  G    R G+FP  +
Sbjct: 2   MVAQHDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCF 50

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIE 54
               +DF+A ++DEL+ ++  V+ IL+ +   +W+  E    GKEG++P++YIE
Sbjct: 2  RGKVLYDFDAQSDDELTVKEGDVVYILDDKKSKDWWMVENVSTGKEGVVPASYIE 56

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 8  DFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIE 54
          D+ A  EDEL+ R+  ++ IL+ + +D  W++ EL+GK G+ P N++E
Sbjct: 7  DYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVE 54

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          AK +F  T EDELSF K  ++ +     +  W+   L+GK G  PSNY++
Sbjct: 4  AKFNFEGTNEDELSFDKGDIITV-TQVVEGGWWEGTLNGKTGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSD---QHWWHGEIGARKGLFPA 203
           L +ALYD   + P EL FRRGD++TV +++    + WW   +  R+G+ P 
Sbjct: 1   LARALYDNVAESPDELAFRRGDILTVLEQNTAGLEGWWLCSLRGRQGIAPG 51

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPATYI 206
           V A+  +  ++   L F +GDVI +  +    D  W  G +  R G FP  Y+
Sbjct: 2   VVAVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEYV 54

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 156 LVQALYDFTPQEPGE-LEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           L + LY FT ++  + L F  G++I V    D  WW GE    +G FPA+Y+
Sbjct: 1   LCRTLYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 159 ALYDFTPQEPGE---LEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
           ALYDF  ++  E   L F++GDVITV  R D++W  G +G + G+FP ++
Sbjct: 4   ALYDFEMKDEDEKDCLTFKKGDVITVIRRVDENWAEGRLGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 9/85 (10%)

Query: 60  WYYGRIT--RADAERLLS---NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDS 113
           W++G++   R +AE+LL       +G FL+R SE+  GD++LS   +  VQH ++  R  
Sbjct: 6   WFHGKLGDGRDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRIRSRQE 65

Query: 114 SG--KFFLWVVK-FNSLNELVEYHR 135
           +G  K++L     F+SL EL++Y+R
Sbjct: 66  NGEKKYYLTDNLVFDSLYELIDYYR 90

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|199829 cd10341, SH2_N-SH2_PLC_gamma_like, N-terminal Src homology 2 (N-SH2) domain in Phospholipase C gamma

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 9/85 (10%)

Query: 239 WYYGRIT--RADAERLLS---NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDS 292
           W++G++   R +AE+LL       +G FL+R SE+  GD++LS   +  VQH ++  R  
Sbjct: 6   WFHGKLGDGRDEAEKLLLEYCEGGDGTFLVRESETFVGDYTLSFWRNGKVQHCRIRSRQE 65

Query: 293 SG--KFFLWVVK-FNSLNELVEYHR 314
           +G  K++L     F+SL EL++Y+R
Sbjct: 66  NGEKKYYLTDNLVFDSLYELIDYYR 90

Phospholipase C gamma is a signaling molecule that is recruited to the C-terminal tail of the receptor upon autophosphorylation of a highly conserved tyrosine. PLCgamma is composed of a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, 2 catalytic regions of PLC domains that flank 2 tandem SH2 domains (N-SH2, C-SH2), and ending with a SH3 domain and C2 domain. N-SH2 SH2 domain-mediated interactions represent a crucial step in transmembrane signaling by receptor tyrosine kinases. SH2 domains recognize phosphotyrosine (pY) in the context of particular sequence motifs in receptor phosphorylation sites. Both N-SH2 and C-SH2 have a very similar binding affinity to pY. But in growth factor stimulated cells these domains bind to different target proteins. N-SH2 binds to pY containing sites in the C-terminal tails of tyrosine kinases and other receptors. Recently it has been shown that this interaction is mediated by phosphorylation-independent interactions between a secondary binding site found exclusively on the N-SH2 domain and a region of the FGFR1 tyrosine kinase domain. This secondary site on the SH2 cooperates with the canonical pY site to regulate selectivity in mediating a specific cellular process. C-SH2 binds to an intramolecular site on PLCgamma itself which allows it to hydrolyze phosphatidylinositol-4,5-bisphosphate into diacylglycerol and inositol triphosphate. These then activate protein kinase C and release calcium. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A +D+     DELSF+   +L  L  ED+  W +  LDG+ GL P+NY+E
Sbjct: 4  ALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYVE 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           A+ K ++ A  EDELS RK   + +L    D  W+R E +G+ G  PSNY+ 
Sbjct: 1  PAVVKFNYEAQREDELSLRKGDRVLVLEKSSD-GWWRGECNGQVGWFPSNYVT 52

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 48.6 bits (116), Expect = 5e-08
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A + ++A   DELSF +  +++IL  ED   W+   L GKEGL P NY+E
Sbjct: 4  ALYAYDAQDTDELSFNEGDIIEILK-EDPSGWWTGRLRGKEGLFPGNYVE 52

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212840 cd11907, SH3_TXK, Src Homology 3 domain of TXK, also called Resting lymphocyte kinase (Rlk)

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 25/76 (32%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
           V+ALYDF P+EP  L  +R +   + ++ D HWW     AR                   
Sbjct: 3   VKALYDFLPREPSNLALKRAEEYLILEQYDPHWWK----ARDRY---------------- 42

Query: 217 RAELDGKEGLIPSNYI 232
                G EGLIPSNY+
Sbjct: 43  -----GNEGLIPSNYV 53

TXK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal cysteine-rich region. Rlk is expressed in T-cells and mast cell lines, and is a key component of T-cell receptor (TCR) signaling. It is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           +ALY F  + P E+ F+ GD+I V +       W  GE+  + G FPA Y+
Sbjct: 3   RALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYV 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 48.8 bits (116), Expect = 6e-08
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A A++DF A    ELS ++  ++KILN +    W+R E+ G+ G  P+NY+E
Sbjct: 2  AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 48.2 bits (115), Expect = 6e-08
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
           +ALYDFT +   EL F+ GD+IT  +  D+ W  GE+  + G+FP  +
Sbjct: 3   RALYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 16/49 (32%), Positives = 31/49 (63%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + L+++ PQ   ELE + GD+I + +  ++ WW G +  + GLFP+ ++
Sbjct: 4   KVLFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            L D + Q   EL+ R GDV+T+T   D+ W+ GE+  R+G+FP  ++
Sbjct: 4   VLQDLSAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALYD+   +  E+ F   D+IT  +  D+ WW G    + GLFPA Y+
Sbjct: 4   ALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYV 51

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212936 cd12003, SH3_EFS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate

 Score = 48.7 bits (116), Expect = 7e-08
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQH---WWHGEIGARKGLFPA 203
           L +ALYD   + P EL FRRGDV+ V  R       WW   +  ++G+ PA
Sbjct: 2   LAKALYDNAAESPEELSFRRGDVLMVLKREHGSLPGWWLCSLHGQQGIAPA 52

EFS is also called HEFS, CASS3 (Cas scaffolding protein family member 3) or SIN (Src-interacting protein). It was identified based on interactions with the Src kinases, Fyn and Yes. It plays a role in thymocyte development and acts as a negative regulator of T cell proliferation. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 25/77 (32%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
            +ALY    ++  EL F  G +IT    SD                       E    W 
Sbjct: 2   ARALYACKAEDESELSFEPGQIITNVQPSD-----------------------EPG--WL 36

Query: 217 RAELDGKEGLIPSNYIE 233
              L+G+ GLIP NY+E
Sbjct: 37  EGTLNGRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212945 cd12012, SH3_RIM-BP_2, Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 48.4 bits (116), Expect = 8e-08
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 13 AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          AE+EL F++ Q++K+   +D   +Y  E++G+ GL+P N + 
Sbjct: 20 AEEELPFKEGQLIKVYGDKDADGFYLGEINGRRGLVPCNMVS 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|198260 cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk)

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 12/99 (12%)

Query: 54  EMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQH 106
            ++ ++WY   +TR+ AE+LL  +  EG F++R S S  G +++SV           ++H
Sbjct: 2   SLEMYEWYSKNMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSAGDPQGVIRH 60

Query: 107 FKVLRDSSGKFFLWVVK-FNSLNELVEYHRTAS---VSR 141
           + V      +++L     F+++ EL+ YH+  +   +SR
Sbjct: 61  YVVCSTPQSQYYLAEKHLFSTIPELINYHQHNAAGLISR 99

A member of the Tec protein tyrosine kinase Btk is expressed in bone marrow, spleen, all hematopoietic cells except T lymphocytes and plasma cells where it plays a crucial role in B cell maturation and mast cell activation. Btk has been shown to interact with GNAQ, PLCG2, protein kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A, and GTF2I. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is implicated in the primary immunodeficiency disease X-linked agammaglobulinemia (Bruton's agammaglobulinemia). The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. Two tyrosine phosphorylation (pY) sites have been identified in Btk: one located in the activation loop of the catalytic domain which regulates the transition between open (active) and closed (inactive) states and the other in its SH3 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198260 cd10397, SH2_Tec_Btk, Src homology 2 (SH2) domain found in Tec protein, Bruton's tyrosine kinase (Btk)

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 12/99 (12%)

Query: 233 EMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQH 285
            ++ ++WY   +TR+ AE+LL  +  EG F++R S S  G +++SV           ++H
Sbjct: 2   SLEMYEWYSKNMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSAGDPQGVIRH 60

Query: 286 FKVLRDSSGKFFLWVVK-FNSLNELVEYHRTAS---VSR 320
           + V      +++L     F+++ EL+ YH+  +   +SR
Sbjct: 61  YVVCSTPQSQYYLAEKHLFSTIPELINYHQHNAAGLISR 99

A member of the Tec protein tyrosine kinase Btk is expressed in bone marrow, spleen, all hematopoietic cells except T lymphocytes and plasma cells where it plays a crucial role in B cell maturation and mast cell activation. Btk has been shown to interact with GNAQ, PLCG2, protein kinase D1, B-cell linker, SH3BP5, caveolin 1, ARID3A, and GTF2I. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. Btk is implicated in the primary immunodeficiency disease X-linked agammaglobulinemia (Bruton's agammaglobulinemia). The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. Two tyrosine phosphorylation (pY) sites have been identified in Btk: one located in the activation loop of the catalytic domain which regulates the transition between open (active) and closed (inactive) states and the other in its SH3 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A +D+ A  +DELSF++  ++ +    DD  WY   L+G  GL P NY+E
Sbjct: 3  VALYDYTADKDDELSFQEGDIIYVTKKNDD-GWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A +DF A  +DEL F    V+++L+  +  +W++  L GK GL P+NY+ 
Sbjct: 2  VRALYDFEALEDDELGFNSGDVIEVLDSSNP-SWWKGRLHGKLGLFPANYVA 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
               +++  Q   EL  R+GD + V ++S   WW GE   + G FP+ Y+
Sbjct: 2   AVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            V ALYD+  + P E+  ++GD++T+ + S++ WW  E+  R+G  PA Y+
Sbjct: 1   CVVALYDYQEKSPREVSMKKGDILTLLNSSNKDWWKVEVNDRQGFVPAAYV 51

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA---RKGLFPATYI 206
           V+ALY+     P EL F  G++I V    D+ WW G I     R+G FP +++
Sbjct: 2   VKALYNCVADNPDELTFSEGEIIIVDGEEDKEWWIGHIDGEPTRRGAFPVSFV 54

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198234 cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain found in B lymphoid kinase (Blk)

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 9/83 (10%)

Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVK--CSDG--VQHFKVLR- 111
           W++  I+R DAER L    NK  G+FLIR SES+ G FSLSVK   + G  V+H+K+   
Sbjct: 5   WFFRTISRKDAERQLLAPMNK-AGSFLIRESESNKGAFSLSVKDVTTQGEVVKHYKIRSL 63

Query: 112 DSSGKFFLWVVKFNSLNELVEYH 134
           D+ G +    + F +L  LV+++
Sbjct: 64  DNGGYYISPRITFPTLQALVQHY 86

Blk is a member of the Src non-receptor type tyrosine kinase family of proteins. Blk is expressed in the B-cells. Unlike most other Src members Blk lacks cysteine residues in the SH4 domain that undergo palmitylation. Blk is required for the development of IL-17-producing gamma-delta T cells. Furthermore, Blk is expressed in lymphoid precursors and, in this capacity, plays a role in regulating thymus cellularity during ontogeny. Blk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198234 cd10371, SH2_Src_Blk, Src homology 2 (SH2) domain found in B lymphoid kinase (Blk)

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 9/83 (10%)

Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVK--CSDG--VQHFKVLR- 290
           W++  I+R DAER L    NK  G+FLIR SES+ G FSLSVK   + G  V+H+K+   
Sbjct: 5   WFFRTISRKDAERQLLAPMNK-AGSFLIRESESNKGAFSLSVKDVTTQGEVVKHYKIRSL 63

Query: 291 DSSGKFFLWVVKFNSLNELVEYH 313
           D+ G +    + F +L  LV+++
Sbjct: 64  DNGGYYISPRITFPTLQALVQHY 86

Blk is a member of the Src non-receptor type tyrosine kinase family of proteins. Blk is expressed in the B-cells. Unlike most other Src members Blk lacks cysteine residues in the SH4 domain that undergo palmitylation. Blk is required for the development of IL-17-producing gamma-delta T cells. Furthermore, Blk is expressed in lymphoid precursors and, in this capacity, plays a role in regulating thymus cellularity during ontogeny. Blk has a unique N-terminal domain, an SH3 domain, an SH2 domain, a kinase domain and a regulatory tail, as do the other members of the family. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec protein, Bmx

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 9/88 (10%)

Query: 59  DWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHFKVLR 111
           DW+ G I+R+ +E+LL  K  EGAF++R S S  G +++S+           V+H+ V  
Sbjct: 7   DWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHT 65

Query: 112 DSSGKFFLWVVK-FNSLNELVEYHRTAS 138
           ++  K +L     F+S+ +L+ YH+  S
Sbjct: 66  NAENKLYLAENYCFDSIPKLIHYHQHNS 93

A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198262 cd10399, SH2_Tec_Bmx, Src homology 2 (SH2) domain found in Tec protein, Bmx

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 9/88 (10%)

Query: 238 DWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHFKVLR 290
           DW+ G I+R+ +E+LL  K  EGAF++R S S  G +++S+           V+H+ V  
Sbjct: 7   DWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHT 65

Query: 291 DSSGKFFLWVVK-FNSLNELVEYHRTAS 317
           ++  K +L     F+S+ +L+ YH+  S
Sbjct: 66  NAENKLYLAENYCFDSIPKLIHYHQHNS 93

A member of the Tec protein tyrosine kinase Bmx is expressed in the endothelium of large arteries, fetal endocardium, adult endocardium of the left ventricle, bone marrow, lung, testis, granulocytes, myeloid cell lines, and prostate cell lines. Bmx is involved in the regulation of Rho and serum response factor (SRF). Bmx has been shown to interact with PAK1, PTK2, PTPN21, and RUFY1. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains. It is not present in Txk and the type 1 splice form of the Drosophila homolog. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNM 209
           +C V+AL+D+  Q   EL F +  +I   ++ +  WW G+ G +K L FP+ Y+  +
Sbjct: 3   KCAVKALFDYKAQREDELTFTKNAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEI 59

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
             L+D +  EP EL F+RGD+I +  +      WW GE+  + GL P  Y+
Sbjct: 3   MGLWDCSGNEPDELSFKRGDLIYIISKEYDSFGWWVGELNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212828 cd11895, SH3_FCHSD1_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 1

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRS----DQHWWHGEIGARKGLFPA 203
           L +ALY +T Q P EL F  G +I +  R+    D  +W GE G R G+FP+
Sbjct: 1   LARALYSYTGQSPEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFPS 52

FCHSD1 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 18/20 (90%), Positives = 18/20 (90%)

Query: 335 LVQALYDFTPQEPGELEFRR 354
            VQALYDF PQEPGELEFRR
Sbjct: 1   RVQALYDFNPQEPGELEFRR 20

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          +A A + F A +  ELS +K  ++ I   + D NWY  E +G+ G+ P++Y+E+
Sbjct: 1  KARALYPFKAQSAKELSLKKGDIIYIRR-QIDKNWYEGEHNGRVGIFPASYVEI 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGARKGLFPATYI 206
           +A YDF  ++  EL  + GD+I + ++  Q  WW GEI  R G FPA Y+
Sbjct: 3   KARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYV 52

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 5  AKHDFNATAED--ELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A+  +   AED  ELSF   Q++  +   D+  W    L+G+ GLIP NY+E
Sbjct: 2  ARALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVE 53

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYI 206
           A Y F      EL FR+G+ I +  + +++W+ G I    R+G+FPA+Y+
Sbjct: 5   AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 54

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +A +DF  Q   EL  ++GD++ +  + DQ+W+ GE   R G+FP +YI
Sbjct: 4   RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYI 52

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYI 206
           L +AL DF  ++ G+L F++G+V+ +  +    WW  E     +GL P TY+
Sbjct: 1   LYEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAENSKGNRGLVPKTYL 52

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM 55
           A  DF A  E +LSF+K +VL+I++   D  W+ AE   G  GL+P  Y+++
Sbjct: 3  EALSDFQAEQEGDLSFKKGEVLRIISKRAD-GWWLAENSKGNRGLVPKTYLKV 54

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRS-----DQHWWHGEIGARKGLFPATYI 206
           AL+D+  +   EL  RRG  + V  +      D+ WW G+IG + G+FP+ Y+
Sbjct: 4   ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYV 56

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212933 cd12000, SH3_CASS4, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPA 203
           L +ALYD       EL FRRGD++TV +++    + WW   +  R+GL PA
Sbjct: 2   LARALYDNKADCSDELAFRRGDILTVLEQNVPGSEGWWKCLLHGRQGLAPA 52

CASS4, also called HEPL (HEF1-EFS-p130Cas-like), localizes to focal adhesions and plays a role in regulating FAK activity, focal adhesion integrity, and cell spreading. It is most abundant in blood cells and lung tissue, and is also found in high levels in leukemia and ovarian cell lines. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
           A Y+F  ++  EL  R GDV+ +  R   DQ WW GE   R G FP+TY+
Sbjct: 5   ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 54

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) proteins

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)

Query: 56  KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 112
           +   W++GRI+R ++ R++  +   +G FL+R S+S+P  F L++     +++F++L  +
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62

Query: 113 SSGKFFLWV----VKFNSLNELVEYHR 135
             G+ F  +     KF+ L +LV++++
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb10 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198278 cd10415, SH2_Grb10, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 10 (Grb10) proteins

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)

Query: 235 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 291
           +   W++GRI+R ++ R++  +   +G FL+R S+S+P  F L++     +++F++L  +
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62

Query: 292 SSGKFFLWV----VKFNSLNELVEYHR 314
             G+ F  +     KF+ L +LV++++
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb10 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb10 has been shown to interact with many different proteins, including the insulin and IGF1 receptors, platelet-derived growth factor (PDGF) receptor-beta, Ret, Kit, Raf1 and MEK1, and Nedd4. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198175 cd09919, SH2_STAT_family, Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) family

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
              G I++ +AE LL  K  G FL+R S+S  G  +++    D     +V+ 
Sbjct: 21  LIMGFISKEEAEDLLKKKPPGTFLLRFSDSELGGITIAWVNEDPDGQSQVIH 72

STAT proteins mediate the signaling of cytokines and a number of growth factors from the receptors of these extracellular signaling molecules to the cell nucleus. STATs are specifically phosphorylated by receptor-associated Janus kinases, receptor tyrosine kinases, or cytoplasmic tyrosine kinases. The phosphorylated STAT molecules dimerize by reciprocal binding of their SH2 domains to the phosphotyrosine residues. These dimeric STATs translocate into the nucleus, bind to specific DNA sequences, and regulate the transcription of their target genes. However there are a number of unphosphorylated STATs that travel between the cytoplasm and nucleus and some STATs that exist as dimers in unstimulated cells that can exert biological functions independent of being activated by a receptor. There are seven mammalian STAT family members which have been identified: STAT1, STAT2, STAT3, STAT4, STAT5 (STAT5A and STAT5B), and STAT6. There are 6 conserved domains in STAT: N-terminal domain (NTD), coiled-coil domain (CCD), DNA-binding domain (DBD), alpha-helical linker domain (LD), SH2 domain, and transactivation domain (TAD). NTD is involved in dimerization of unphosphorylated STATs monomers and for the tetramerization between STAT1, STAT3, STAT4 and STAT5 on promoters with two or more tandem STAT binding sites. It also plays a role in promoting interactions with transcriptional co-activators such as CREB binding protein (CBP)/p300, as well as being important for nuclear import and deactivation of STATs involving tyrosine de-phosphorylation. The CCD interacts with other proteins, such as IFN regulatory protein 9 (IRF-9/p48) with STAT1 and c-JUN with STAT3 and is also thought to participate in the negative regulation of these proteins. Distinct genes are bound to STATs via their DBD domain. This domain is also involved in nuclear translocation of activated STAT1 and STAT3 phosphorylated dimers upon cytokine stimulation. LD links the DNA-binding and SH2 domains and is important for the transcriptional activation of STAT1 in response to IFN-gamma. It also plays a role in protein-protein interactions and has also been implicated in the constitutive nucleocytoplasmic shuttling of unphosphorylated STATs in resting cells. The SH2 domain is necessary for receptor association and tyrosine phosphodimer formation. Residues within this domain may be particularly important for some cellular functions mediated by the STATs as well as residues adjacent to this domain. The TAD interacts with several proteins, namely minichromosome maintenance complex component 5 (MCM5), breast cancer 1 (BRCA1) and CBP/p300. TAD also contains a modulatory phosphorylation site that regulates STAT activity and is necessary for maximal transcription of a number of target genes. The conserved tyrosine residue present in the C-terminus is crucial for dimerization via interaction with the SH2 domain upon the interaction of the ligand with the receptor. STAT activation by tyrosine phosphorylation also determines nuclear import and retention, DNA binding to specific DNA elements in the promoters of responsive genes, and transcriptional activation of STAT dimers. In addition to the SH2 domain there is a coiled-coil domain, a DNA binding domain, and a transactivation domain in the STAT proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 115

>gnl|CDD|198175 cd09919, SH2_STAT_family, Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) family

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
              G I++ +AE LL  K  G FL+R S+S  G  +++    D     +V+ 
Sbjct: 21  LIMGFISKEEAEDLLKKKPPGTFLLRFSDSELGGITIAWVNEDPDGQSQVIH 72

STAT proteins mediate the signaling of cytokines and a number of growth factors from the receptors of these extracellular signaling molecules to the cell nucleus. STATs are specifically phosphorylated by receptor-associated Janus kinases, receptor tyrosine kinases, or cytoplasmic tyrosine kinases. The phosphorylated STAT molecules dimerize by reciprocal binding of their SH2 domains to the phosphotyrosine residues. These dimeric STATs translocate into the nucleus, bind to specific DNA sequences, and regulate the transcription of their target genes. However there are a number of unphosphorylated STATs that travel between the cytoplasm and nucleus and some STATs that exist as dimers in unstimulated cells that can exert biological functions independent of being activated by a receptor. There are seven mammalian STAT family members which have been identified: STAT1, STAT2, STAT3, STAT4, STAT5 (STAT5A and STAT5B), and STAT6. There are 6 conserved domains in STAT: N-terminal domain (NTD), coiled-coil domain (CCD), DNA-binding domain (DBD), alpha-helical linker domain (LD), SH2 domain, and transactivation domain (TAD). NTD is involved in dimerization of unphosphorylated STATs monomers and for the tetramerization between STAT1, STAT3, STAT4 and STAT5 on promoters with two or more tandem STAT binding sites. It also plays a role in promoting interactions with transcriptional co-activators such as CREB binding protein (CBP)/p300, as well as being important for nuclear import and deactivation of STATs involving tyrosine de-phosphorylation. The CCD interacts with other proteins, such as IFN regulatory protein 9 (IRF-9/p48) with STAT1 and c-JUN with STAT3 and is also thought to participate in the negative regulation of these proteins. Distinct genes are bound to STATs via their DBD domain. This domain is also involved in nuclear translocation of activated STAT1 and STAT3 phosphorylated dimers upon cytokine stimulation. LD links the DNA-binding and SH2 domains and is important for the transcriptional activation of STAT1 in response to IFN-gamma. It also plays a role in protein-protein interactions and has also been implicated in the constitutive nucleocytoplasmic shuttling of unphosphorylated STATs in resting cells. The SH2 domain is necessary for receptor association and tyrosine phosphodimer formation. Residues within this domain may be particularly important for some cellular functions mediated by the STATs as well as residues adjacent to this domain. The TAD interacts with several proteins, namely minichromosome maintenance complex component 5 (MCM5), breast cancer 1 (BRCA1) and CBP/p300. TAD also contains a modulatory phosphorylation site that regulates STAT activity and is necessary for maximal transcription of a number of target genes. The conserved tyrosine residue present in the C-terminus is crucial for dimerization via interaction with the SH2 domain upon the interaction of the ligand with the receptor. STAT activation by tyrosine phosphorylation also determines nuclear import and retention, DNA binding to specific DNA elements in the promoters of responsive genes, and transcriptional activation of STAT dimers. In addition to the SH2 domain there is a coiled-coil domain, a DNA binding domain, and a transactivation domain in the STAT proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 115

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHW-WHGEIGARKGLFPATYIL 207
           V+A+YD+T QEP EL F+ G+ +  V D  +Q W      G   GL+PA Y+ 
Sbjct: 4   VRAVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYVE 56

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212785 cd11851, SH3_RIM-BP, Src homology 3 domains of Rab3-interacting molecules (RIMs) binding proteins

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 10 NATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE 54
          N   E+ELSF    V+++    D+  +Y  EL  G++GL+PSN+++
Sbjct: 16 NDDPEEELSFHAGDVVRVYGPMDEDGFYYGELEGGRKGLVPSNFVQ 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 32/82 (39%)

Query: 159 ALYDFTPQEPG-------ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
           AL+D+ P+E         EL FR GD+ITV          GE               M++
Sbjct: 4   ALFDYDPRESSPNVDAEVELSFRAGDIITV---------FGE---------------MDE 39

Query: 212 DMNWYRAELDGKEGLIPSNYIE 233
           D  +Y  EL+G+ GL+PSN++E
Sbjct: 40  D-GFYYGELNGQRGLVPSNFLE 60

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYI 53
          A   +  T EDEL F++ +++ I++ +  +  W++ EL+GKEG+ P N++
Sbjct: 6  ALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFPDNFV 55

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|198246 cd10383, SH2_SOCS2, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           E+    WY+G +T  +A+  L +  EG FL+R S  S    ++SVK S G  + ++    
Sbjct: 3   ELSQTGWYWGSMTVNEAKEKLQDAPEGTFLVRDSSHSDYLLTISVKTSAGPTNLRI-EYQ 61

Query: 114 SGKFFLWVV--------KFNSLNELVEYHRTASVSRSQ 143
            GKF L  +        +F+S+  L+EY+      +  
Sbjct: 62  DGKFRLDSIICVKSKLKQFDSVVHLIEYYVQMCKDKRT 99

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198246 cd10383, SH2_SOCS2, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           E+    WY+G +T  +A+  L +  EG FL+R S  S    ++SVK S G  + ++    
Sbjct: 3   ELSQTGWYWGSMTVNEAKEKLQDAPEGTFLVRDSSHSDYLLTISVKTSAGPTNLRI-EYQ 61

Query: 293 SGKFFLWVV--------KFNSLNELVEYHRTASVSRSQ 322
            GKF L  +        +F+S+  L+EY+      +  
Sbjct: 62  DGKFRLDSIICVKSKLKQFDSVVHLIEYYVQMCKDKRT 99

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY G + R  AE  L N+    +L+R      G++++S+K ++ V+H K+L         
Sbjct: 7   WYAGAMERLQAETELINRVNSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRDGFFHIA 66

Query: 120 WVVKFNSLNELVEYHRTASVS---RSQDVKLR 148
              KF SL ELVEY++  S+    RS D  L+
Sbjct: 67  ENRKFKSLMELVEYYKHHSLKEGFRSLDTTLQ 98

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3 proteins

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY G + R  AE  L N+    +L+R      G++++S+K ++ V+H K+L         
Sbjct: 7   WYAGAMERLQAETELINRVNSTYLVRHRTKESGEYAISIKYNNEVKHIKILTRDGFFHIA 66

Query: 299 WVVKFNSLNELVEYHRTASVS---RSQDVKLR 327
              KF SL ELVEY++  S+    RS D  L+
Sbjct: 67  ENRKFKSLMELVEYYKHHSLKEGFRSLDTTLQ 98

Proto-oncogene vav is a member of the Dbl family of guanine nucleotide exchange factors (GEF) for the Rho family of GTP binding proteins. All vavs are activated by tyrosine phosphorylation leading to their activation. There are three Vav mammalian family members: Vav1 which is expressed in the hematopoietic system, and Vav2 and Vav3 are more ubiquitously expressed. Vav3 preferentially activates RhoA, RhoG and, to a lesser extent, Rac1. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. VAV3 has been shown to interact with Grb2. Vav proteins are involved in several processes that require cytoskeletal reorganization, such as the formation of the immunological synapse (IS), phagocytosis, platelet aggregation, spreading, and transformation. Vavs function as guanine nucleotide exchange factors (GEFs) for the Rho/Rac family of GTPases. Vav family members have several conserved motifs/domains including: a leucine-rich region, a leucine-zipper, a calponin homology (CH) domain, an acidic domain, a Dbl-homology (DH) domain, a pleckstrin homology (PH) domain, a cysteine-rich domain, 2 SH3 domains, a proline-rich region, and a SH2 domain. Vavs are the only known Rho GEFs that have both the DH/PH motifs and SH2/SH3 domains in the same protein. The leucine-rich helix-loop-helix (HLH) domain is thought to be involved in protein heterodimerization with other HLH proteins and it may function as a negative regulator by forming inactive heterodimers. The CH domain is usually involved in the association with filamentous actin, but in Vav it controls NFAT stimulation, Ca2+ mobilization, and its transforming activity. Acidic domains are involved in protein-protein interactions and contain regulatory tyrosines. The DH domain is a GDP-GTP exchange factor on Rho/Rac GTPases. The PH domain in involved in interactions with GTP-binding proteins, lipids and/or phosphorylated serine/threonine residues. The SH3 domain is involved in localization of proteins to specific sites within the cell interacting with protein with proline-rich sequences. The SH2 domain mediates a high affinity interaction with tyrosine phosphorylated proteins. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATY 205
           VQ ++ +T Q+P EL    GDV+ V  +    W+ GE      +G FP++Y
Sbjct: 2   VQCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSY 52

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +D+  Q   EL    GD+IT   + D  WW GEI  R+GLFP  ++
Sbjct: 6   FDYKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYI 206
            +ALYD+   +  E+ F  GD+IT  ++ D+ WW G       GLFPA Y+
Sbjct: 2   ARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYV 52

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|198276 cd10413, SH2_Grb7, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 56  KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 112
           +   W++GRI+R +++RL+  +   +G FL+R S+ +P  F LS+     V+H+ +L  +
Sbjct: 3   RTQPWFHGRISREESQRLIGQQGLVDGVFLVRESQRNPQGFVLSLCHLQKVKHYLILPSE 62

Query: 113 SSGKFFLWV----VKFNSLNELVEYHR 135
             G+ +  +     +F  L +LVE+H+
Sbjct: 63  EEGRLYFSMDDGQTRFTDLLQLVEFHQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb7 is part of the Grb7 family of proteins which also includes Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198276 cd10413, SH2_Grb7, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 7 (Grb7) proteins

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 235 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 291
           +   W++GRI+R +++RL+  +   +G FL+R S+ +P  F LS+     V+H+ +L  +
Sbjct: 3   RTQPWFHGRISREESQRLIGQQGLVDGVFLVRESQRNPQGFVLSLCHLQKVKHYLILPSE 62

Query: 292 SSGKFFLWV----VKFNSLNELVEYHR 314
             G+ +  +     +F  L +LVE+H+
Sbjct: 63  EEGRLYFSMDDGQTRFTDLLQLVEFHQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb7 is part of the Grb7 family of proteins which also includes Grb10, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb7 binds strongly to the erbB2 receptor, unlike Grb10 and Grb14 which bind weakly to it. Grb7 family proteins are phosphorylated on serine/threonine as well as tyrosine residues. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +V+A ++F      EL F +GDVI VT   +  WW G    R G FP+ Y+
Sbjct: 1   VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRS-----DQHWWHGEIGARKGLFPATYI 206
           L  ALYD+      EL  RRGDV+ V  +      D  WW G+I  R G+FPA Y+
Sbjct: 1   LWTALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHRLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 19/76 (25%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           + +ALYD+ PQ   EL  +  D++ + ++SD  WW  ++             N  DD   
Sbjct: 1   VYKALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKV-----------NSSDD--- 46

Query: 216 YRAELDGKEGLIPSNY 231
                D   GL+P+ Y
Sbjct: 47  -----DEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212906 cd11973, SH3_ASEF, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +AL+D    +  EL F+ GDVI V D +++ WW G +   +G FPA+++
Sbjct: 21  EALWDHVTMDDQELGFKAGDVIEVMDATNKEWWWGRVLDSEGWFPASFV 69

ASEF, also called ARHGEF4, exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli). GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF can activate Rac1 or Cdc42. Truncated ASEF, which is found in colorectal cancers, is constitutively active and has been shown to promote angiogenesis and cancer cell migration. ASEF contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 73

>gnl|CDD|212890 cd11957, SH3_RUSC2, Src homology 3 domain of RUN and SH3 domain-containing protein 2

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+AL      EPG+L F +GD++ V  R+D  W    +G   GL P  Y+
Sbjct: 2   VKALCHHIATEPGQLSFNKGDILQVLSRADGDWLRCSLGPDSGLVPIAYV 51

RUSC2, also called Iporin or Interacting protein of Rab1, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          +EA+A  D+      ELSF++  VL +L+ +   +W+R E +G  GLIP  YI
Sbjct: 2  VEAVACFDYTGRTAQELSFKRGDVL-LLHSKASSDWWRGEHNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNY 52
          A+A +DF    E++LSF++   + +    D   W R  L+G+EG+ P  +
Sbjct: 2  AVALYDFTGETEEDLSFQRGDRILVTEHLDA-EWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212935 cd12002, SH3_NEDD9, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Neural precursor cell Expressed, Developmentally Down-regulated 9

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFP 202
           + +ALYD  P+   EL FR+GD++TV +++      WW   +  R+G+ P
Sbjct: 1   MARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIAP 50

NEDD9 is also called human enhancer of filamentation 1 (HEF1) or CAS-L (Crk-associated substrate in lymphocyte). It was first described as a gene predominantly expressed in early embryonic brain, and was also isolated from a screen of human proteins that regulate filamentous budding in yeast, and as a tyrosine phosphorylated protein in lymphocytes. It promotes metastasis in different solid tumors. NEDD9 localizes in focal adhesions and associates with FAK and Abl kinase. It also interacts with SMAD3 and the proteasomal machinery which allows its rapid turnover; these interactions are not shared by other CAS proteins. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + +V+A ++F      EL   +GD+I VT   +  WW G +  + G FP+ Y+
Sbjct: 1   QLVVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYV 53

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|198261 cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain found in Tec protein, Txk

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 15/92 (16%)

Query: 55  MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSD------GVQHF 107
           ++ ++WY+  ITR  AERLL  +  EGAF++R S    G +++SV           ++H+
Sbjct: 3   LEIYEWYHKNITRNQAERLLRQESKEGAFIVRDS-RHLGSYTISVFTRARRSTEASIKHY 61

Query: 108 KVLRDSSGKFFLWVVK----FNSLNELVEYHR 135
           ++ ++ SG+   W V     F S+ EL++YH+
Sbjct: 62  QIKKNDSGQ---WYVAERHLFQSIPELIQYHQ 90

A member of the Tec protein tyrosine kinase Txk is expressed in thymus, spleen, lymph node, T lymphocytes, NK cells, mast cell lines, and myeloid cell line. Txk plays a role in TCR signal transduction, T cell development, and selection which is analogous to the function of Itk. Txk has been shown to interact with IFN-gamma. Unlike most of the Tec family members Txk lacks a PH domain. Instead Txk has a unique region containing a palmitoylated cysteine string which has a similar membrane tethering function as the PH domain. Txk also has a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP and crucial to the function of the PH domain. It is not present in Txk which is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198261 cd10398, SH2_Tec_Txk, Src homology 2 (SH2) domain found in Tec protein, Txk

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 15/92 (16%)

Query: 234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSD------GVQHF 286
           ++ ++WY+  ITR  AERLL  +  EGAF++R S    G +++SV           ++H+
Sbjct: 3   LEIYEWYHKNITRNQAERLLRQESKEGAFIVRDS-RHLGSYTISVFTRARRSTEASIKHY 61

Query: 287 KVLRDSSGKFFLWVVK----FNSLNELVEYHR 314
           ++ ++ SG+   W V     F S+ EL++YH+
Sbjct: 62  QIKKNDSGQ---WYVAERHLFQSIPELIQYHQ 90

A member of the Tec protein tyrosine kinase Txk is expressed in thymus, spleen, lymph node, T lymphocytes, NK cells, mast cell lines, and myeloid cell line. Txk plays a role in TCR signal transduction, T cell development, and selection which is analogous to the function of Itk. Txk has been shown to interact with IFN-gamma. Unlike most of the Tec family members Txk lacks a PH domain. Instead Txk has a unique region containing a palmitoylated cysteine string which has a similar membrane tethering function as the PH domain. Txk also has a zinc-binding motif, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP and crucial to the function of the PH domain. It is not present in Txk which is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 106

>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 59  DWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 116
            W +G + R +A  +L  K   +G+FL+R S   PG + L++   + V HF++ ++   K
Sbjct: 1   QWLHGALDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEI-QNRDDK 59

Query: 117 FF------LWVVKFNSLNELVEYH 134
           +F       +     SL  L+E++
Sbjct: 60  WFYIDDGPYF----ESLEHLIEHY 79

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 86

>gnl|CDD|198211 cd10348, SH2_Cterm_shark_like, C-terminal Src homology 2 (SH2) domain found in SH2 domains, ANK, and kinase domain (shark) proteins

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 238 DWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 295
            W +G + R +A  +L  K   +G+FL+R S   PG + L++   + V HF++ ++   K
Sbjct: 1   QWLHGALDRNEAVEILKQKADADGSFLVRYSRRRPGGYVLTLVYENHVYHFEI-QNRDDK 59

Query: 296 FF------LWVVKFNSLNELVEYH 313
           +F       +     SL  L+E++
Sbjct: 60  WFYIDDGPYF----ESLEHLIEHY 79

These non-receptor protein-tyrosine kinases contain two SH2 domains, five ankyrin (ANK)-like repeats, and a potential tyrosine phosphorylation site in its carboxyl-terminal tail which resembles the phosphorylation site in members of the src family. Like, mammalian non-receptor protein-tyrosine kinases, ZAP-70 and syk proteins, they do not have SH3 domains. However, the presence of ANK makes these unique among protein-tyrosine kinases. Both tyrosine kinases and ANK repeats have been shown to transduce developmental signals, and SH2 domains are known to participate intimately in tyrosine kinase signaling. These tyrosine kinases are believed to be involved in epithelial cell polarity. The members of this family include the shark (SH2 domains, ANK, and kinase domain) gene in Drosophila and yellow fever mosquitos, as well as the hydra protein HTK16. Drosophila Shark is proposed to transduce intracellularly the Crumbs, a protein necessary for proper organization of ectodermal epithelia, intercellular signal. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 86

>gnl|CDD|198277 cd10414, SH2_Grb14, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 14 (Grb14) proteins

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 25/83 (30%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 60  WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-DSSGK 116
           W++ +I+R +A+RL+  +   +G FL+R S+S+P  F LS+     ++HF+++  +  G+
Sbjct: 7   WFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPRTFVLSMSHGQKIKHFQIIPVEDDGE 66

Query: 117 FFLWV----VKFNSLNELVEYHR 135
            F  +     +F  L +LVE+++
Sbjct: 67  LFHTLDDGHTRFTDLIQLVEFYQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb14 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR) and weakly to the erbB2 receptor. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198277 cd10414, SH2_Grb14, Src homology 2 (SH2) domain found in the growth factor receptor bound, subclass 14 (Grb14) proteins

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 25/83 (30%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 239 WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-DSSGK 295
           W++ +I+R +A+RL+  +   +G FL+R S+S+P  F LS+     ++HF+++  +  G+
Sbjct: 7   WFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPRTFVLSMSHGQKIKHFQIIPVEDDGE 66

Query: 296 FFLWV----VKFNSLNELVEYHR 314
            F  +     +F  L +LVE+++
Sbjct: 67  LFHTLDDGHTRFTDLIQLVEFYQ 89

The Grb family binds to the epidermal growth factor receptor (EGFR, erbB1) via their SH2 domains. Grb14 is part of the Grb7 family of proteins which also includes Grb7, and Grb14. They are composed of an N-terminal Proline-rich domain, a Ras Associating-like (RA) domain, a Pleckstrin Homology (PH) domain, a phosphotyrosine interaction region (PIR, BPS) and a C-terminal SH2 domain. The SH2 domains of Grb7, Grb10 and Grb14 preferentially bind to a different RTK. Grb14 binds to Fibroblast Growth Factor Receptor (FGFR) and weakly to the erbB2 receptor. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE----IGARK-GLFPATYI 206
            V+ALY +      +L F  G +ITVT+  D  W+ GE     G  K G+FP  ++
Sbjct: 3   KVKALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFV 58

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 55
          A A +D+ A  ++E+SF +  ++  +   D+  W+      G++GL P+NY+E+
Sbjct: 2  AKALYDYQAAEDNEISFVEGDIITQIEQIDE-GWWLGVNAKGQKGLFPANYVEL 54

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           Q  + + PQ   ELE + GD+I V    ++ WW G +  + G+FP+ +I
Sbjct: 3   QVAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A +DF    E EL F++  ++ + N  D+ NWY   ++G+ G  P NY+E
Sbjct: 5  ALYDFEPENEGELGFKEGDIITLTNQIDE-NWYEGMVNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 8  DFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEM 55
          D+N  A DEL+ +K  V+++++ E +D  W+  EL+G+ G  P N++  
Sbjct: 7  DYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVMP 55

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          E I + D++A   DEL+ +   ++  +   ++  W+   L+GK G+ P N+++
Sbjct: 1  EVIVEFDYDAEEPDELTLKVGDIITNVKKMEE-GWWEGTLNGKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 45.9 bits (108), Expect = 6e-07
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +A++D       EL F+ GDVI V D S++ WW G+I   +G FPA+++
Sbjct: 8   EAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 56

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH 58
          + +A +D+    EDELSF++  ++ ++   DD  WY   ++G  GL P NY+E   H
Sbjct: 4  KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDD-GWYEGVMNGVTGLFPGNYVESIMH 59

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212898 cd11965, SH3_ASAP1, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 1

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA---RKGLFPATYI 206
           V+ +YD       EL F  G+VI VT   DQ WW G I     RKG+FP +++
Sbjct: 2   VKTIYDCQADNDDELTFVEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 54

ASAP1 is also called DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6. However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A+A +D+    +DE+SF   + +  + M D+  W++    G  GL P+NY+E+
Sbjct: 3  AVALYDYQGEGDDEISFDPQETITDIEMVDE-GWWKGTCHGHRGLFPANYVEL 54

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 10 NATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          N  AE ELSFR   ++ +    D+  +Y  EL+G+ GL+PSN++E
Sbjct: 16 NVDAEVELSFRAGDIITVFGEMDEDGFYYGELNGQRGLVPSNFLE 60

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR-----KGLFPATYI 206
           + Q +  FT     +L    G ++ V  +S   WW GE+ AR      G FPA Y+
Sbjct: 1   IAQVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYV 56

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 45.5 bits (107), Expect = 7e-07
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           QALY +  ++   L F + DVITV ++ D  WW GE+  +KG FP +Y+
Sbjct: 3   QALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 45.4 bits (107), Expect = 8e-07
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK--GLFPATYI 206
           QALY + PQ   ELE R GD++ V ++ D  W+ G     K  G FP  Y+
Sbjct: 5   QALYSYAPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 55

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
           + L+ +  Q   EL  + GD++T+  +   D  WW GE+  R+G+FP  ++
Sbjct: 3   KVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFV 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          A +DF A  ++EL+F+  +++ +L+ + D NW++      EGL P+N++
Sbjct: 5  ALYDFEAAEDNELTFKAGEIITVLD-DSDPNWWKGSNHRGEGLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +AL+DFT     EL F+ GDVI +  R ++ W  G +    G+FP +++
Sbjct: 3   EALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFV 51

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212934 cd12001, SH3_BCAR1, Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFPA 203
           L +ALYD   + P EL FR+GD++TV +R  Q    WW   +  R+G+ P 
Sbjct: 4   LAKALYDNVAESPDELSFRKGDIMTVLERDTQGLDGWWLCSLHGRQGIVPG 54

BCAR1, also called p130cas or CASS1, is the founding member of the CAS family of scaffolding proteins and was originally identified through its ability to associate with Crk. The name BCAR1 was designated because the human gene was identified in a screen for genes that promote resistance to tamoxifen. It is widely expressed and its deletion is lethal in mice. It plays a role in regulating cell motility, survival, proliferation, transformation, cancer progression, and bacterial pathogenesis. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|213017 cd12141, SH3_DNMBP_C2, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYI 53
          A + F A + +ELS   +Q ++IL   D   +  W+ AE +G++G +PSNYI
Sbjct: 4  AVYTFKARSPNELSVSANQRVRILEFSDLTGNKEWWLAEANGQKGYVPSNYI 55

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A A +++      +LSF+K  ++ +L    D NWY  E +GK+G  P++Y++
Sbjct: 2  AKALYNYEGKEPGDLSFKKGDII-LLRKRIDENWYHGECNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 24/73 (32%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           ALYD+  +   +L F++GD + + D SD  WW                          R 
Sbjct: 4   ALYDYEARTDDDLSFKKGDRLQILDDSDGDWW------------------------LARH 39

Query: 219 ELDGKEGLIPSNY 231
              GKEG IPSNY
Sbjct: 40  LSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +    +D+ A  +DELS  K  V+ ++   +D  W+  E +G++GL+P  Y+E
Sbjct: 1  KYSVLYDYTAQEDDELSISKGDVVAVIEKGED-GWWTVERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          AK +F  T EDELSF K  V+ +  +E+   W+    +G+ G  PSNY+
Sbjct: 4  AKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V A+YD+T  +  EL F+ G +I V  ++D  W+ G +    GLFP  Y+
Sbjct: 5   VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 54

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|198220 cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases D and E (ShkD and ShkE)

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGD--FSLSVKCSDGVQHFKVLRD 112
           W++G I+R +AE+ L  + EG FLIR+S + P    F++S K      H ++ R 
Sbjct: 12  WFHGDISRDEAEKRLRGRPEGTFLIRLSSTDPKKTPFTISKKKKSKPVHKRISRI 66

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkD and shkE. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 87

>gnl|CDD|198220 cd10357, SH2_ShkD_ShkE, Src homology 2 (SH2) domain found in SH2 domain-bearing protein kinases D and E (ShkD and ShkE)

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGD--FSLSVKCSDGVQHFKVLRD 291
           W++G I+R +AE+ L  + EG FLIR+S + P    F++S K      H ++ R 
Sbjct: 12  WFHGDISRDEAEKRLRGRPEGTFLIRLSSTDPKKTPFTISKKKKSKPVHKRISRI 66

SH2-bearing genes cloned from Dictyostelium include two transcription factors, STATa and STATc, and a signaling factor, SHK1 (shkA). A database search of the Dictyostelium discoideum genome revealed two additional putative STAT sequences, dd-STATb and dd-STATd, and four additional putative SHK genes, dd-SHK2 (shkB), dd-SHK3 (shkC), dd-SHK4 (shkD), and dd-SHK5 (shkE). This model contains members of shkD and shkE. All of the SHK members are most closely related to the protein kinases found in plants. However these kinases in plants are not conjugated to any SH2 or SH2-like sequences. Alignment data indicates that the SHK SH2 domains carry some features of the STAT SH2 domains in Dictyostelium. When STATc's linker domain was used for a BLAST search, the sequence between the protein kinase domain and the SH2 domain (the linker) of SHK was recovered, suggesting a close relationship among these molecules within this region. SHK's linker domain is predicted to contain an alpha-helix which is indeed homologous to that of STAT. Based on the phylogenetic alignment, SH2 domains can be grouped into two categories, STAT-type and Src-type. SHK family members are in between, but are closer to the STAT-type which indicates a close relationship between SHK and STAT families in their SH2 domains and further supports the notion that SHKs linker-SH2 domain evolved from STAT or STATL (STAT-like Linker-SH2) domain found in plants. In SHK, STAT, and SPT6, the linker-SH2 domains all reside exclusively in the C-terminal regions. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 87

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK--GLFPATYI 206
           QALY++ P+   ELE R GDVI V ++ D  W+ G     K  G FP  Y+
Sbjct: 8   QALYNYMPRNEDELELREGDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYV 58

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212907 cd11974, SH3_ASEF2, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor 2

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +AL+D    +  EL F+ GDVI V + S++ WW G    R+  FPA+++
Sbjct: 4   EALWDHVTMDDQELAFKAGDVIRVLEASNKDWWWGRNEDREAWFPASFV 52

ASEF2, also called Spermatogenesis-associated protein 13 (SPATA13), is a GEF that localizes with actin at the leading edge of cells and is important in cell migration and adhesion dynamics. GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF2 can activate both Rac 1 and Cdc42, but only Rac1 activation is necessary for increased cell migration and adhesion turnover. Together with APC (adenomatous polyposis coli) and Neurabin2, a scaffold protein that binds F-actin, it is involved in regulating HGF-induced cell migration. ASEF2 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212811 cd11878, SH3_Bem1p_1, First Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW---HGEIGARKGLFPATY 205
           ++ALYD+  Q PGEL F +GD   V    DQ  W      +  ++GL P +Y
Sbjct: 2   IRALYDYRAQTPGELSFSKGDFFHVIGEEDQGEWYEATNPVTGKRGLVPKSY 53

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          AIA++DF A    ELS  K  V+KI        W+R E++G+ G  PS Y+E
Sbjct: 3  AIARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 159 ALYDFTPQEPGELEFRRGDVITV-TDRSDQHWWHGEIGARKGLFPATYI 206
           A YDF  ++  EL   +GDV+ + T  S   WW GE+  R G FP+TY+
Sbjct: 5   ARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYV 53

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +DF  Q P EL  ++GD++ +    D++W  GE   R G+FPA Y+
Sbjct: 7   FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYV 52

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212734 cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQH----WWHGEIGARKGLFPATYI 206
           ALY F  + PGEL    G V+TV ++ D      WW  E   ++G  P+ Y+
Sbjct: 4   ALYTFEARSPGELSVTEGQVVTVLEKHDLKGNPEWWLVEDRGKQGYVPSNYL 55

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212734 cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMN---WYRAELDGKEGLIPSNYI 53
           A + F A +  ELS  + QV+ +L   D      W+  E  GK+G +PSNY+
Sbjct: 3  YALYTFEARSPGELSVTEGQVVTVLEKHDLKGNPEWWLVEDRGKQGYVPSNYL 55

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|198209 cd10346, SH2_SH2B_family, Src homology 2 (SH2) domain found in SH2B adapter protein family

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 54  EMKNHDWYYGRITRADAERLL----SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
           E+  + W++G ++R+DA +L+    ++ H G FL+R SE+  G+F L+       +H ++
Sbjct: 4   ELSEYPWFHGTLSRSDAAQLVLHSGADGH-GVFLVRQSETRRGEFVLTFNFQGRAKHLRL 62

Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRT 136
             +  G+  +  + F S+ +++E+ R 
Sbjct: 63  TLNEKGQCRVQHLWFPSIFDMLEHFRQ 89

The SH2B adapter protein family has 3 members: SH2B1 (SH2-B, PSM), SH2B2 (APS), and SH2B3 (Lnk). SH2B family members contain a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198209 cd10346, SH2_SH2B_family, Src homology 2 (SH2) domain found in SH2B adapter protein family

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 233 EMKNHDWYYGRITRADAERLL----SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
           E+  + W++G ++R+DA +L+    ++ H G FL+R SE+  G+F L+       +H ++
Sbjct: 4   ELSEYPWFHGTLSRSDAAQLVLHSGADGH-GVFLVRQSETRRGEFVLTFNFQGRAKHLRL 62

Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRT 315
             +  G+  +  + F S+ +++E+ R 
Sbjct: 63  TLNEKGQCRVQHLWFPSIFDMLEHFRQ 89

The SH2B adapter protein family has 3 members: SH2B1 (SH2-B, PSM), SH2B2 (APS), and SH2B3 (Lnk). SH2B family members contain a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNY 52
          +EA+  +D+ A  +DE+S R    + ++  +D   W   E++G +GL P++Y
Sbjct: 2  VEAL--YDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|198259 cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk)

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 13/89 (14%)

Query: 58  HDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ--------HFK 108
           ++WY   I R+ AE+LL     EG F++R S S PG +++S+    G +        H K
Sbjct: 6   YEWYNKNINRSKAEKLLRDEGKEGGFMVRDS-SQPGLYTVSLYTKAGGEGNPCIRHYHIK 64

Query: 109 VLRDSSGKFFLWVVK--FNSLNELVEYHR 135
              DS  K++L   K  FNS+ EL+EYH+
Sbjct: 65  ETNDSPKKYYL-AEKHVFNSIPELIEYHK 92

A member of the Tec protein tyrosine kinase Itk is expressed thymus, spleen, lymph node, T lymphocytes, NK and mast cells. It plays a role in T-cell proliferation and differentiation, analogous to Tec family kinases Txk. Itk has been shown to interact with Fyn, Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1, Lymphocyte cytosolic protein 2, Linker of activated T cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl isomerase A. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|198259 cd10396, SH2_Tec_Itk, Src homology 2 (SH2) domain found in Tec protein, IL2-inducible T-cell kinase (Itk)

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 13/89 (14%)

Query: 237 HDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ--------HFK 287
           ++WY   I R+ AE+LL     EG F++R S S PG +++S+    G +        H K
Sbjct: 6   YEWYNKNINRSKAEKLLRDEGKEGGFMVRDS-SQPGLYTVSLYTKAGGEGNPCIRHYHIK 64

Query: 288 VLRDSSGKFFLWVVK--FNSLNELVEYHR 314
              DS  K++L   K  FNS+ EL+EYH+
Sbjct: 65  ETNDSPKKYYL-AEKHVFNSIPELIEYHK 92

A member of the Tec protein tyrosine kinase Itk is expressed thymus, spleen, lymph node, T lymphocytes, NK and mast cells. It plays a role in T-cell proliferation and differentiation, analogous to Tec family kinases Txk. Itk has been shown to interact with Fyn, Wiskott-Aldrich syndrome protein, KHDRBS1, PLCG1, Lymphocyte cytosolic protein 2, Linker of activated T cells, Karyopherin alpha 2, Grb2, and Peptidylprolyl isomerase A. Most of the Tec family members have a PH domain (Txk and the short (type 1) splice variant of Drosophila Btk29A are exceptions), a Tec homology (TH) domain, a SH3 domain, a SH2 domain, and a protein kinase catalytic domain. The TH domain consists of a Zn2+-binding Btk motif and a proline-rich region. The Btk motif is found in Tec kinases, Ras GAP, and IGBP. It is crucial for the function of Tec PH domains and it's lack of presence in Txk is not surprising since it lacks a PH domain. The type 1 splice form of the Drosophila homolog also lacks both the PH domain and the Btk motif. The proline-rich regions are highly conserved for the most part with the exception of Bmx whose residues surrounding the PXXP motif are not conserved (TH-like) and Btk29A which is entirely unique with large numbers of glycine residues (TH-extended). Tec family members all lack a C-terminal tyrosine having an autoinhibitory function in its phosphorylated state. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 108

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFPATYI 206
           V AL+D+  +   EL FR GD +TV  + D     WW   +  ++G  P   +
Sbjct: 3   VYALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVPRNLL 55

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           A+ DF   +  +L F  GD + V  +    WW  E     G  PA+++
Sbjct: 4   AIADFVATDDSQLSFESGDKLLVLRKPSVDWWWAEHNGCCGYIPASHL 51

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212865 cd11932, SH3_SH3RF2_2, Second Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 6/57 (10%)

Query: 156 LVQALYDFTPQEPGE------LEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           L +ALY+F  +E         L+F++ D+ITV  R D++W  G++G + G+FP  ++
Sbjct: 1   LCRALYNFDLKEKNREESKDCLKFQKDDIITVISRVDENWAEGKLGDQVGIFPILFV 57

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + L+ +TPQ   ELE + GD I V    ++ WW G++  + G+FP+ ++
Sbjct: 3   KVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFV 51

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRS-----DQHWWHGEIGARKGLFPATYI 206
           A++D+      EL  RRGD + V  +      D+ WW G+I  R G+FP+ Y+
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYV 56

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
          EA+AK++FNA    ELS RK   + +L  + D NWY  ++ G  ++G+ P +Y+E+
Sbjct: 2  EAVAKYNFNADTNVELSLRKGDRV-VLLKQVDQNWYEGKIPGTNRQGIFPVSYVEV 56

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK--GLFPATYI 206
           +ALY +TPQ   ELE R GD++ V ++ D  W+ G        G FP  Y+
Sbjct: 3   RALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYV 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A  DF+   + EL FR+   +++++   D NW++    G+ G+ P NY+ 
Sbjct: 4  ALFDFDPQEDGELGFRRGDFIEVMD-NSDPNWWKGACHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMED----DMNWYRAELDGKEGLIPSNYIEM 55
          A  D+ A+AEDEL+ R+   +++L+ +     D  W+  +++ + G+ PSNY+  
Sbjct: 4  AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 27/77 (35%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
           V ALYD+TP    +L+ R+G+                           Y++  E ++ W+
Sbjct: 3   VVALYDYTPMNAQDLQLRKGE--------------------------EYVILEESNLPWW 36

Query: 217 RA-ELDGKEGLIPSNYI 232
           RA + +G+EG IPSNY+
Sbjct: 37  RARDKNGREGYIPSNYV 53

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
             LYD+   E  E+E   G+++T  +  D+ WW G       GLFP+ Y+
Sbjct: 3   VVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSKGESGLFPSNYV 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRAE-LDGKEGLIPSNYIE 54
            +A + F    ++ELSF K + L+I+   EDD +W++A    G  GL+P NY+E
Sbjct: 1  VVVALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGTTGLVPRNYVE 55

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A+ +F  T EDELS  K  ++ +  +E+   W+   L+GK G  PSNY+ 
Sbjct: 6  ARFNFKQTNEDELSVCKGDIIYVTRVEEG-GWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHW-WHGEIGARKGLFPATYI 206
            +ALYD+  Q   EL F  GD + V D SD  W   G  G + G  PA YI
Sbjct: 2   AKALYDYDKQTEEELSFNEGDTLDVYDDSDSDWILVGFNGTQFGFVPANYI 52

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 25/80 (31%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           +V A+YDF P EP +L    G+   + +++D HWW     AR                  
Sbjct: 2   IVVAMYDFQPTEPHDLRLETGEEYVILEKNDVHWWK----AR------------------ 39

Query: 216 YRAELDGKEGLIPSNYIEMK 235
              +  GKEG IPSNY+  K
Sbjct: 40  ---DKYGKEGYIPSNYVTGK 56

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198247 cd10384, SH2_SOCS3, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           +Y+  ++  +A  LLS +  G FLIR S      F+LSVK   G ++ ++  +    F L
Sbjct: 12  FYWSTVSGKEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTESGTKNLRIQCEGGS-FSL 70

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|198247 cd10384, SH2_SOCS3, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           +Y+  ++  +A  LLS +  G FLIR S      F+LSVK   G ++ ++  +    F L
Sbjct: 12  FYWSTVSGKEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTESGTKNLRIQCEGGS-FSL 70

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 101

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIE 54
          A +D++   +DELSF+    L  L  ED+  W +  LD G+ GL P+NY+E
Sbjct: 5  ALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLDSGQVGLYPANYVE 55

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYI 206
             ALY +  ++   L F +GD+ITV ++ +  WW GE+ G  +G FP +Y+
Sbjct: 2   ATALYPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELEGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+A++DF P    EL    GDVI V    D+ W  G      G FP++++
Sbjct: 2   VRAIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGTKEGVTGQFPSSFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           A +DF  ++  EL F  GDVIT+ +   + W  GE+  + G+FP  ++
Sbjct: 4   ARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             QAL  +T ++   L F + D+ITV ++  ++WW GE+   +G FP +Y+
Sbjct: 1   KAQALCSWTAKKDNHLNFSKNDIITVLEQQ-ENWWFGEVHGGRGWFPKSYV 50

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 27/77 (35%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYR 217
           +  +DFT     EL F++GDV+ +                           +  D  W++
Sbjct: 3   RGKFDFTASGEDELSFKKGDVLKI---------------------------LSSDDIWFK 35

Query: 218 AELDGKEGLIPSNYIEM 234
           AEL+G+EG +P N++++
Sbjct: 36  AELNGEEGYVPKNFVDI 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A + + A  EDELS +   ++++   +DD  W+  EL+GK+G+ P+ Y+E
Sbjct: 4  ALYSYTANREDELSLQPGDIIEVHEKQDD-GWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE 54
          A +DF++    ELS R  +VL I   +    W       G+ GL PS+Y+E
Sbjct: 4  ALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYVE 54

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
           A Y+F      EL  R+GD + +  + DQ+W+ G+I    R+G+FP +Y+
Sbjct: 5   AKYNFNADTNVELSLRKGDRVVLLKQVDQNWYEGKIPGTNRQGIFPVSYV 54

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHWWHGEI-GARKGLFPATYI 206
           V+ALYD+  QE  EL F+ GD +T + D  +Q W  G +   + GL+PA Y+
Sbjct: 3   VRALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLDSGQVGLYPANYV 54

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRG-DVITVTDRSDQHWWHGEI-GARKGLFPATYI 206
           V+ALYD+T QE  EL F+ G +++ + +  +Q W  G +   R GL+PA Y+
Sbjct: 4   VRALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLLSGRIGLYPANYV 55

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
          EAIAK +FN   + E+SFRK + + +L   D+ NWY   + G  ++G+ P  Y+++
Sbjct: 2  EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 56

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFP 202
           ALY F   EP EL+F  GD I +    +  W  GE+  R+G+FP
Sbjct: 4   ALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFP 47

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|198208 cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 24/77 (31%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 60  WYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           W++G+I+R ++E+++    K  G FLIR +  + G ++L +     V H+++ +D +GK 
Sbjct: 2   WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKDKTGKL 60

Query: 118 FL-WVVKFNSLNELVEY 133
            +    KF++L +LVE+
Sbjct: 61  SIPEGKKFDTLWQLVEH 77

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|198208 cd10345, SH2_C-SH2_Zap70_Syk_like, C-terminal Src homology 2 (SH2) domain found in Zeta-chain-associated protein kinase 70 (ZAP-70) and Spleen tyrosine kinase (Syk) proteins

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 24/77 (31%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 239 WYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           W++G+I+R ++E+++    K  G FLIR +  + G ++L +     V H+++ +D +GK 
Sbjct: 2   WFHGKISREESEQIVLIGSKTNGKFLIR-ARDNNGSYALCLLHEGKVLHYRIDKDKTGKL 60

Query: 297 FL-WVVKFNSLNELVEY 312
            +    KF++L +LVE+
Sbjct: 61  SIPEGKKFDTLWQLVEH 77

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of both Syk and Zap70. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 95

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           Q L+D T  +P EL F+RGD I +  +      WW GE+    GL P  YI
Sbjct: 3   QGLWDCTGDQPDELSFKRGDTIYILSKEYNRFGWWVGEMKGTIGLVPKAYI 53

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212811 cd11878, SH3_Bem1p_1, First Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNY 52
          A +D+ A    ELSF K     ++  ED   WY A   + GK GL+P +Y
Sbjct: 4  ALYDYRAQTPGELSFSKGDFFHVIGEEDQGEWYEATNPVTGKRGLVPKSY 53

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 43.1 bits (101), Expect = 6e-06
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V A+YD++  +  EL F  G +I V  ++D  W+ G      GLFP  Y+
Sbjct: 2   VVAIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYV 51

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR-KGLFPATYI 206
           V+ALYD+  +   EL F +G +I    +    WW G+ G + +  FP+ Y+
Sbjct: 2   VKALYDYRAKRSDELSFCKGALIHNVSKETGGWWKGDYGGKVQHYFPSNYV 52

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198263 cd10400, SH2_SAP1a, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP) 1a

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 61  YYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
           Y+G+I+R   E+LL     +G++L+R SES PG + L V     V  ++V +  +G
Sbjct: 6   YHGKISRETGEKLLLAAGLDGSYLLRDSESVPGVYCLCVLYKGYVYTYRVSQTETG 61

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198263 cd10400, SH2_SAP1a, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP) 1a

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 240 YYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
           Y+G+I+R   E+LL     +G++L+R SES PG + L V     V  ++V +  +G
Sbjct: 6   YHGKISRETGEKLLLAAGLDGSYLLRDSESVPGVYCLCVLYKGYVYTYRVSQTETG 61

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212933 cd12000, SH3_CASS4, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKIL--NMEDDMNWYRAELDGKEGLIPSNYIEM 55
          + A A +D  A   DEL+FR+  +L +L  N+     W++  L G++GL P+N +++
Sbjct: 1  LLARALYDNKADCSDELAFRRGDILTVLEQNVPGSEGWWKCLLHGRQGLAPANRLQL 57

CASS4, also called HEPL (HEF1-EFS-p130Cas-like), localizes to focal adhesions and plays a role in regulating FAK activity, focal adhesion integrity, and cell spreading. It is most abundant in blood cells and lung tissue, and is also found in high levels in leukemia and ovarian cell lines. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          E +A  DF AT + +LSF     L +L      +W+ AE +G  G IP++++
Sbjct: 1  EYVAIADFVATDDSQLSFESGDKLLVLRKPSV-DWWWAEHNGCCGYIPASHL 51

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198264 cd10401, SH2_C-SH2_Syk_like, C-terminal Src homology 2 (SH2) domain found in Spleen tyrosine kinase (Syk) proteins

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 60  WYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           W++G+I+R ++E++L    K  G FLIR  +++ G ++L +     V H+++ +D +GK 
Sbjct: 5   WFHGKISREESEQILLIGSKTNGKFLIRERDNN-GSYALCLLHDGKVLHYRIDKDKTGKL 63

Query: 118 FLWV-VKFNSLNELVEYH 134
            +    KF++L +LVE++
Sbjct: 64  SIPDGKKFDTLWQLVEHY 81

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Syk. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|198264 cd10401, SH2_C-SH2_Syk_like, C-terminal Src homology 2 (SH2) domain found in Spleen tyrosine kinase (Syk) proteins

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 239 WYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           W++G+I+R ++E++L    K  G FLIR  +++ G ++L +     V H+++ +D +GK 
Sbjct: 5   WFHGKISREESEQILLIGSKTNGKFLIRERDNN-GSYALCLLHDGKVLHYRIDKDKTGKL 63

Query: 297 FLWV-VKFNSLNELVEYH 313
            +    KF++L +LVE++
Sbjct: 64  SIPDGKKFDTLWQLVEHY 81

ZAP-70 and Syk comprise a family of hematopoietic cell specific protein tyrosine kinases (PTKs) that are required for antigen and antibody receptor function. ZAP-70 is expressed in T and natural killer (NK) cells and Syk is expressed in B cells, mast cells, polymorphonuclear leukocytes, platelets, macrophages, and immature T cells. They are required for the proper development of T and B cells, immune receptors, and activating NK cells. They consist of two N-terminal Src homology 2 (SH2) domains and a C-terminal kinase domain separated from the SH2 domains by a linker or hinge region. Phosphorylation of both tyrosine residues within the Immunoreceptor Tyrosine-based Activation Motifs (ITAM; consensus sequence Yxx[LI]x(7,8)Yxx[LI]) by the Src-family PTKs is required for efficient interaction of ZAP-70 and Syk with the receptor subunits and for receptor function. ZAP-70 forms two phosphotyrosine binding pockets, one of which is shared by both SH2 domains. In Syk the two SH2 domains do not form such a phosphotyrosine-binding site. The SH2 domains here are believed to function independently. In addition, the two SH2 domains of Syk display flexibility in their relative orientation, allowing Syk to accommodate a greater variety of spacing sequences between the ITAM phosphotyrosines and singly phosphorylated non-classical ITAM ligands. This model contains the C-terminus SH2 domains of Syk. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 99

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPAT 204
           A+  ++PQE GE+   +GD + V    +  +W G +  R G FP+ 
Sbjct: 4   AVKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFPSD 49

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMN-WYRAELDGKEGLIPSNYI 53
          E  A + F      +LSF+    + +L   D    W+   L G+ G+ P+NY+
Sbjct: 1  EVTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKIL--NMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A A +D  A + DEL+FR+  +L +L  N      W+   L G++G+ P N +++
Sbjct: 2  ARALYDNVAESPDELAFRRGDILTVLEQNTAGLEGWWLCSLRGRQGIAPGNRLKL 56

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 27/79 (34%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNMEDDMN 214
           V ALY FT +   EL F +G+ + + ++   D  WW     AR  L              
Sbjct: 2   VVALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWK----ARNAL-------------- 43

Query: 215 WYRAELDGKEGLIPSNYIE 233
                  G  GL+P NY+E
Sbjct: 44  -------GTTGLVPRNYVE 55

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A A +D++A  ++ELSF ++  +  +   DD +W+  E  G  GL PSNY+E+
Sbjct: 2  AKALYDYDAAEDNELSFFENDKIINIEFVDD-DWWLGECHGSRGLFPSNYVEL 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212855 cd11922, SH3_Sorbs1_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 42.7 bits (100), Expect = 9e-06
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYI 206
           A ++F      E+ FR+G+ IT+  + D++W+ G I   +R+G+FP TY+
Sbjct: 5   AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 54

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A A +DF A    ELSF+K   + IL  + D NWY  E  G+ G+ P +Y+E
Sbjct: 3  ARAVYDFKAQTSKELSFKKGDTVYILR-KIDQNWYEGEHHGRVGIFPISYVE 53

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 33/50 (66%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          +A +D+ A   DEL+  +  ++++L  ++D  W+ + ++G++G  P+NY+
Sbjct: 3  VALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMN-WYRAELDGKEGLIPSNYIE 54
          +A  D+ A  +DE+S ++ +V+++L  E + + W+      KEG +P++Y+E
Sbjct: 3  VAIADYEAQGDDEISLQEGEVVEVL--EKNDSGWWYVRKGDKEGWVPASYLE 52

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          EAI + D+ A  EDEL+     ++  +  +DD  W+  E+ G+ GL P N++
Sbjct: 1  EAIVEFDYKAQHEDELTITVGDIITKIK-KDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH 58
          + +A +D++   +DELSF +  ++ ++   DD  WY    +G  GL P NY+E   H
Sbjct: 1  KVVAIYDYSKDKDDELSFMEGAIIYVIKKNDD-GWYEGVCNGVTGLFPGNYVESIMH 56

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 34/53 (64%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          E I ++D++A  EDEL+ R  ++++ +   ++  W   EL+G+ G+ P N+++
Sbjct: 1  EYIVEYDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFPDNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212845 cd11912, SH3_Bzz1_1, First Src Homology 3 domain of Bzz1 and similar domains

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 8  DFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEM 55
          D+ A+ +DE+S  + + + +L  +D   W +     G+EGL+P++YIE+
Sbjct: 7  DYTASGDDEVSISEGEEVTVLEPDDGSGWTKVRNGSGEEGLVPTSYIEI 55

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the first C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI 53
          IA++DF  + E +L  +K + L++L  + D  W+ A+    GKEG IPSNY+
Sbjct: 3  IAQYDFVPSNERDLQLKKGEKLQVL--KSDGEWWLAKSLTTGKEGYIPSNYV 52

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 157 VQALYDFTPQEPGELEFRRGDVI----TVTDRSDQHWWHG---EIGARKGLFPATYI 206
           ++ LY +TPQE  ELE   GD I       D S   W  G     G   GL P  Y 
Sbjct: 2   LRVLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCS-GLLPENYT 57

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212830 cd11897, SH3_SNX18, Src Homology 3 domain of Sorting nexin 18

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR--KGLFPATYI 206
           +ALYDF  + PGE+  R  +V+++    D   W   + +R  +GLFPA+Y+
Sbjct: 3   RALYDFRSENPGEISLREHEVLSLCSEQDIEGWLEGVNSRGDRGLFPASYV 53

SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. It binds FIP5 and is required for apical lumen formation. It may also play a role in axonal elongation. SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX18 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           +A+YD++ Q+  E+ FR GD I      D+ W +G +    R G+ PA YI
Sbjct: 4   RAMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYI 54

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G ITR +AE  L+N  +G+FL+R S       SLS +      H ++   S+G+F  
Sbjct: 12  WYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI-EHSNGRFSF 70

Query: 120 W----VVKFNSLNELVE 132
           +    V    S+ +L+E
Sbjct: 71  YEQPDVEGHTSIVDLIE 87

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|198250 cd10387, SH2_SOCS6, Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY+G ITR +AE  L+N  +G+FL+R S       SLS +      H ++   S+G+F  
Sbjct: 12  WYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRI-EHSNGRFSF 70

Query: 299 W----VVKFNSLNELVE 311
           +    V    S+ +L+E
Sbjct: 71  YEQPDVEGHTSIVDLIE 87

SH2 domain found in SOCS proteins. SOCS was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. Members (SOCS4-SOCS7) were identified by their conserved SOCS box, an adapter motif of 3 helices that associates substrate binding domains, such as the SOCS SH2 domain, ankryin, and WD40 with ubiquitin ligase components. These show limited cytokine induction. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 100

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 8  DFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +F AT +D +SF+K Q +++++      WY  ++DGKEG  PS+YIE
Sbjct: 7  EFQATIQDGISFQKGQKVEVIDKNPSGWWY-VKIDGKEGWAPSSYIE 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|198279 cd10416, SH2_SH2D2A, Src homology 2 domain found in the SH2 domain containing protein 2A (SH2D2A)

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 116
           W++G ITR +AERLL  K +G +L+R SES+   F L+ +     +HF + +   G+
Sbjct: 9   WFHGFITRREAERLLEPKPQGCYLVRFSESAV-TFVLTYRSRTCCRHFLLAQLRDGR 64

SH2D2A contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|198279 cd10416, SH2_SH2D2A, Src homology 2 domain found in the SH2 domain containing protein 2A (SH2D2A)

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 295
           W++G ITR +AERLL  K +G +L+R SES+   F L+ +     +HF + +   G+
Sbjct: 9   WFHGFITRREAERLLEPKPQGCYLVRFSESAV-TFVLTYRSRTCCRHFLLAQLRDGR 64

SH2D2A contains a single SH2 domain. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 102

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          A++DF+A    +LSFR+  ++++L+  D  NW+R  + G+ G  P NY+
Sbjct: 4  AQYDFSAEDPSQLSFRRGDIIEVLDCPDP-NWWRGRISGRVGFFPRNYV 51

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 5  AKHDFNATA-EDELSFRKSQVLKILN----MEDDMNWYRAEL-DGKEGLIPSNYIE 54
          A +DF     E ELS +K  ++ +L+    +  D  W++    DG+ G  PSNY+E
Sbjct: 4  ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNME----DDMNWYRAELDGKEGLIPSNYI 53
          A  D++A  EDEL+ R+ Q +++L+ +     D  W+  ++  K G+ PSNY+
Sbjct: 4  ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYV 56

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212785 cd11851, SH3_RIM-BP, Src homology 3 domains of Rab3-interacting molecules (RIMs) binding proteins

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 33/86 (38%)

Query: 156 LVQALYDFTPQE-------PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILN 208
           L+ ALYD+ P+          EL F  GDV+ V         +G +              
Sbjct: 1   LMVALYDYNPETMSPNDDPEEELSFHAGDVVRV---------YGPM-------------- 37

Query: 209 MEDDMNWYRAEL-DGKEGLIPSNYIE 233
             D+  +Y  EL  G++GL+PSN+++
Sbjct: 38  --DEDGFYYGELEGGRKGLVPSNFVQ 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
           ALY + PQ+P ELE R+G++ TVT++    W+ G      + G+FP  Y+
Sbjct: 4   ALYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYV 53

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN 57
          +A + ++   ED+LSF+K + LK++  E+   W++A      KEG IPSNY+   N
Sbjct: 3  VALYPYDGIHEDDLSFKKGEKLKVI--EEHGEWWKARSLTTKKEGFIPSNYVAKVN 56

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212891 cd11958, SH3_RUSC1, Src homology 3 domain of RUN and SH3 domain-containing protein 1

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 11 ATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNY 52
          A +E +LSFRK + L++L   D+ +W R     +EGL+P  Y
Sbjct: 9  AGSESQLSFRKGEELQVLGTVDE-DWIRCRRGDREGLVPVGY 49

RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 5/56 (8%)

Query: 3  AIAKHDFNATAED--ELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 55
          A A + ++A+ +D  ELSF K ++L++ +      W++A   +G+ G+ PSNY+++
Sbjct: 2  ARALYPYDASPDDPNELSFEKGEILEVSDTSG--KWWQARKSNGETGICPSNYLQL 55

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198285 cd10718, SH2_CIS, Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G IT ++A + L    EG FL+R S       +LSVK + G  + ++   S G F L
Sbjct: 6   WYWGSITASEAHQALQKAPEGTFLVRDSSHPSYMLTLSVKTTRGPTNVRI-EYSDGSFRL 64

CIS family members are known to be cytokine-inducible negative regulators of cytokine signaling. The expression of the CIS gene can be induced by IL2, IL3, GM-CSF and EPO in hematopoietic cells. Proteasome-mediated degradation of this protein has been shown to be involved in the inactivation of the erythropoietin receptor. Suppressor of cytokine signalling (SOCS) was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 88

>gnl|CDD|198285 cd10718, SH2_CIS, Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY+G IT ++A + L    EG FL+R S       +LSVK + G  + ++   S G F L
Sbjct: 6   WYWGSITASEAHQALQKAPEGTFLVRDSSHPSYMLTLSVKTTRGPTNVRI-EYSDGSFRL 64

CIS family members are known to be cytokine-inducible negative regulators of cytokine signaling. The expression of the CIS gene can be induced by IL2, IL3, GM-CSF and EPO in hematopoietic cells. Proteasome-mediated degradation of this protein has been shown to be involved in the inactivation of the erythropoietin receptor. Suppressor of cytokine signalling (SOCS) was first recognized as a group of cytokine-inducible SH2 (CIS) domain proteins comprising eight family members in human (CIS and SOCS1-SOCS7). In addition to the SH2 domain, SOCS proteins have a variable N-terminal domain and a conserved SOCS box in the C-terminal domain. SOCS proteins bind to a substrate via their SH2 domain. The prototypical members, CIS and SOCS1-SOCS3, have been shown to regulate growth hormone signaling in vitro and in a classic negative feedback response compete for binding at phosphotyrosine sites in JAK kinase and receptor pathways to displace effector proteins and target bound receptors for proteasomal degradation. Loss of SOCS activity results in excessive cytokine signaling associated with a variety of hematopoietic, autoimmune, and inflammatory diseases and certain cancers. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 88

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           ALYDF      EL  ++ D++ +  + D  WW  +    +++G  PA Y+
Sbjct: 4   ALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYL 53

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212699 cd11765, SH3_Nck_1, First Src Homology 3 domain of Nck adaptor proteins

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI 53
           +AK+D+ A  + ELS +K++ L +L  +D  +W++ +    + G +PSNY+
Sbjct: 2  VVAKYDYTAQGDQELSIKKNEKLTLL--DDSKHWWKVQNSSNQTGYVPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The first SH3 domain of Nck proteins preferentially binds the PxxDY sequence, which is present in the CD3e cytoplasmic tail. This binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          A +DF A  ++EL+F+   ++ IL+ + D NW++ E     GL PSN++
Sbjct: 5  AIYDFEAAEDNELTFKAGDIITILD-DSDPNWWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYIE 54
          A +D+ A +++ELSF +  +++IL  +D   D  W+  E +G+ G+ PS  +E
Sbjct: 4  ALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQH----WWHGEIGARK-GLFPATYI 206
           +A YDF  +   EL FR GD + +  +  Q     W    +  +K GL PA Y+
Sbjct: 3   RAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYV 56

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212936 cd12003, SH3_EFS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDM--NWYRAELDGKEGLIPSNYIEM 55
          A A +D  A + +ELSFR+  VL +L  E      W+   L G++G+ P+N + +
Sbjct: 3  AKALYDNAAESPEELSFRRGDVLMVLKREHGSLPGWWLCSLHGQQGIAPANRLRL 57

EFS is also called HEFS, CASS3 (Cas scaffolding protein family member 3) or SIN (Src-interacting protein). It was identified based on interactions with the Src kinases, Fyn and Yes. It plays a role in thymocyte development and acts as a negative regulator of T cell proliferation. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 8  DFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYI 53
          D +    DELSF++  ++ I++ E D   W+  EL+GK GL+P +Y+
Sbjct: 7  DCSGNEPDELSFKRGDLIYIISKEYDSFGWWVGELNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
          EA+A++ F    E ELSFRK + + ++   ++ NWY   + G  ++G+ P++Y+++
Sbjct: 2  EAVAQYTFKGDLEVELSFRKGEHICLIRKVNE-NWYEGRITGTGRQGIFPASYVQV 56

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 13/48 (27%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 9  FNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEM 55
          + A  EDEL+ ++  ++ +++ +  D  W+  EL+G+ G+ P N++++
Sbjct: 8  YEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVKL 55

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDD--MNWYRAELDGKEGLIPSNYIEM 55
          A  D+ A   DELSFR+   L +L   DD    W+ A L+ KEG +P N + +
Sbjct: 5  ALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVPRNLLGL 57

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEM 55
          +A + +  + + +L F K + L+IL  E    W++A+    G+EG IP N++  
Sbjct: 3  VALYSYEPSHDGDLGFEKGEKLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAK 54

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 4  VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFP 202
           +V AL+D+  Q   EL F+ GD IT+  R D     WW   +  ++G  P
Sbjct: 2   MVYALWDYEAQNADELSFQEGDAITILRRKDDSETEWWWARLNDKEGYVP 51

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 336 VQALYDFTPQEPGELEFRR 354
           VQAL+DF PQE GEL FRR
Sbjct: 2   VQALFDFDPQEDGELGFRR 20

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 8  DFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          DF    +DEL FRK+ ++ I++ +D+  W   EL+G  G  P+ ++E+
Sbjct: 7  DFERHDDDELGFRKNDIITIISQKDEHCWV-GELNGLRGWFPAKFVEL 53

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A  K DF A +  EL+ +K  ++ I + E D NW   E  G+ G+ P+NY+E+
Sbjct: 3  ARLKFDFQAQSPKELTLQKGDIVYI-HKEVDKNWLEGEHHGRVGIFPANYVEV 54

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 13/59 (22%)

Query: 157 VQALYDFTP--------QEPGELEFRRGDVITVTDRSDQHWW----HGEIGARKGLFPA 203
           V+AL+D+ P        +E G L F++GD++ + ++ D +WW     G+   R GL P+
Sbjct: 2   VRALFDYDPEEDPLIPCKEAG-LSFKKGDILQIVNQDDPNWWQARKVGDPNGRAGLIPS 59

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          EAIAK D+   +  ELSF+K   L + +   D +W+    +G +GL+P  YI
Sbjct: 1  EAIAKFDYVGRSARELSFKKGASLLLYHRASD-DWWEGRHNGIDGLVPHQYI 51

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 160 LYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           L+DF  +   +L    G+++ + ++ D  W+ G+     G+FPA ++
Sbjct: 5   LHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNY 52
          +A A +DF    EDELSF+   +  I  +E  D  W   EL GK G+ P N+
Sbjct: 1  KARALYDFTGENEDELSFKAGDI--ITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYI 53
           + +A +D+      +L  RK +   IL  E ++ W+RA + +G+EG IPSNY+
Sbjct: 1  KKVVALYDYTPMNAQDLQLRKGEEYVILE-ESNLPWWRARDKNGREGYIPSNYV 53

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIEMK 56
           +A +DF  T   +L     +   IL  ++D++W++A +  GKEG IPSNY+  K
Sbjct: 3  VVAMYDFQPTEPHDLRLETGEEYVILE-KNDVHWWKARDKYGKEGYIPSNYVTGK 56

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE 54
          A +D+     DELSF+  + L  +  ED+  W +  L  G+ GL P+NY+E
Sbjct: 6  ALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLLSGRIGLYPANYVE 56

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 8  DFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNY 52
          D++A   DELSF++  ++ +L  + +  +W+ A L G+EG +P NY
Sbjct: 8  DYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWASLCGREGYVPRNY 53

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 158 QALYDFTPQEPGE----LEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALYDF  ++       L F + D++TV  R D++W  G +G + G+FP +Y+
Sbjct: 3   KALYDFEVKDKEADKDCLPFAKDDILTVIRRVDENWAEGMLGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          A    D +A  ++EL  R+  V+ I  + D   W+R EL+G+ G+ P  ++
Sbjct: 2  ARVLQDLSAQLDEELDLREGDVVTITGILDK-GWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
           A AK DF A    EL  +K  ++ I   + D NWY  E  G+ G+ P +YIE+
Sbjct: 2  PARAKFDFKAQTLKELPLQKGDIVYIYK-QIDQNWYEGEHHGRVGIFPRSYIEL 54

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNME----DDMNWYRAELDGKEGLIPSNYI 53
          A +D+ A+ EDELS R+  V+++L+ +     D  W+  ++  + G+ P+NY+
Sbjct: 4  ALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHRLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITV--TDRSDQHWWHGEIGARKGLFPATY 205
           V AL+D++ + P EL F+ GD++TV   D     WW   +  R+G  P  Y
Sbjct: 3   VYALWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWASLCGREGYVPRNY 53

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS 101
           WY   I+R  A  LL +K  G FL+R S +  G + L+VK +
Sbjct: 5   WYKPNISRDQAIALLKDKPPGTFLVRDSTTYKGAYGLAVKVA 46

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|198181 cd09927, SH2_Tensin_like, Src homology 2 domain found in Tensin-like proteins

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS 280
           WY   I+R  A  LL +K  G FL+R S +  G + L+VK +
Sbjct: 5   WYKPNISRDQAIALLKDKPPGTFLVRDSTTYKGAYGLAVKVA 46

SH2 domain found in Tensin-like proteins. The Tensins are a family of intracellular proteins that interact with receptor tyrosine kinases (RTKs), integrins, and actin. They are thought act as signaling bridges between the extracellular space and the cytoskeleton. There are four homologues: Tensin1, Tensin2 (TENC1, C1-TEN), Tensin3 and Tensin4 (cten), all of which contain a C-terminal tandem SH2-PTB domain pairing, as well as actin-binding regions that may localize them to focal adhesions. The isoforms of Tensin2 and Tensin3 contain N-terminal C1 domains, which are atypical and not expected to bind to phorbol esters. Tensins 1-3 contain a phosphatase (PTPase) and C2 domain pairing which resembles PTEN (phosphatase and tensin homologue deleted on chromosome 10) protein. PTEN is a lipid phosphatase that dephosphorylates phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) to yield phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). As PtdIns(3,4,5)P3 is the product of phosphatidylinositol 3-kinase (PI3K) activity, PTEN is therefore a key negative regulator of the PI3K pathway. Because of their PTEN-like domains, the Tensins may also possess phosphoinositide-binding or phosphatase capabilities. However, only Tensin2 and Tensin3 have the potential to be phosphatases since only their PTPase domains contain a cysteine residue that is essential for catalytic activity. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 116

>gnl|CDD|212886 cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of Apoptosis Stimulating of p53 protein 2

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 23/75 (30%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           +V AL+D+  +   EL F+ GD +T+  R D                       ED+  W
Sbjct: 2   VVYALWDYEGESDDELSFKEGDCMTILRRED-----------------------EDETEW 38

Query: 216 YRAELDGKEGLIPSN 230
           + A L+ KEG +P N
Sbjct: 39  WWARLNDKEGYVPRN 53

ASPP2 is the full length form of the previously-identified tumor supressor, p53-binding protein 2 (p53BP2). ASPP2 activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). It plays a central role in regulating apoptosis and cell growth; ASPP2-deficient mice show postnatal death. Downregulated expression of ASPP2 is frequently found in breast tumors, lung cancer, and diffuse large B-cell lymphoma where it is correlated with a poor clinical outcome. ASPP2 contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP2 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212812 cd11879, SH3_Bem1p_2, Second Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 160 LYDFTPQEPGELEFRRGDVITVTDRSDQHWW----HGEIGARKGLFPATYI 206
           LYDF  + P EL+ + GD I +   S+  W+     G +G   GL P +++
Sbjct: 5   LYDFKAERPDELDAKAGDAIIICAHSNYEWFVAKPIGRLG-GPGLIPVSFV 54

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH---WWHGEIGARKGLFPATYI 206
           V+ALYD+  Q   EL F  G +I + ++ +Q    +W GE   R G+FP+  +
Sbjct: 2   VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 54

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212841 cd11908, SH3_ITK, Src Homology 3 domain of Interleukin-2-inducible T-cell Kinase

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYI 206
           LV ALYD+   +P EL  R  +   + D S+ HWW   +    +G  P++Y+
Sbjct: 2   LVIALYDYQTNDPQELALRYNEEYHLLDSSEIHWWRVQDKNGHEGYVPSSYL 53

ITK (also known as Tsk or Emt) is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. ITK is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, ITK plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, ITK is crucial for the development of T-helper(Th)2 effector responses. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           ALY + PQ+  ELE R+G++  V ++    W+ G        G+FP  Y+
Sbjct: 5   ALYAYKPQKNDELELRKGEMYRVIEKCQDGWFKGTSLRTGVSGVFPGNYV 54

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 40.0 bits (93), Expect = 7e-05
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILN-MEDDMNWYRAELDGKEGLIPSNYIE 54
          A+A+++F A    ELS R+  V++I + +  D  W++ E +G+ G  PS Y+E
Sbjct: 3  AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212818 cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 26/79 (32%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
              A  DF   EPGEL FR+GD I +                        I ++   + W
Sbjct: 1   SCTAKMDFEGVEPGELSFRQGDSIEI------------------------IGDLIPGLQW 36

Query: 216 Y--RAELDGKEGLIPSNYI 232
           +  R++  G+ G +P+N+ 
Sbjct: 37  FVGRSKSSGRVGFVPTNHF 55

This subfamily is composed of vertebrate SH3TC proteins and hypothetical fungal proteins containing BAR and SH3 domains. Mammals contain two SH3TC proteins, SH3TC1 and SH3TC2. The function of SH3TC1 is unknown. SH3TC2 is localized in Schwann cells in the peripheral nervous system, where it interacts with Rab11 and plays a role in peripheral nerve myelination. Mutations in SH3TC2 are associated with Charcot-Marie-Tooth disease type 4C, a severe hereditary peripheral neuropathy with symptoms that include progressive scoliosis, delayed age of walking, muscular atrophy, distal weakness, and reduced nerve conduction velocity. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212818 cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 5  AKHDFNATAEDELSFRKSQVLKIL-NMEDDMNWY--RAELDGKEGLIPSNYI 53
          AK DF      ELSFR+   ++I+ ++   + W+  R++  G+ G +P+N+ 
Sbjct: 4  AKMDFEGVEPGELSFRQGDSIEIIGDLIPGLQWFVGRSKSSGRVGFVPTNHF 55

This subfamily is composed of vertebrate SH3TC proteins and hypothetical fungal proteins containing BAR and SH3 domains. Mammals contain two SH3TC proteins, SH3TC1 and SH3TC2. The function of SH3TC1 is unknown. SH3TC2 is localized in Schwann cells in the peripheral nervous system, where it interacts with Rab11 and plays a role in peripheral nerve myelination. Mutations in SH3TC2 are associated with Charcot-Marie-Tooth disease type 4C, a severe hereditary peripheral neuropathy with symptoms that include progressive scoliosis, delayed age of walking, muscular atrophy, distal weakness, and reduced nerve conduction velocity. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|198274 cd10411, SH2_SH2B2, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 20/87 (22%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 53  IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
           +E+ ++ W++G ++R  A +L+     +  G F+IR SE+ PG++ L+       +H ++
Sbjct: 3   LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGEYVLTFNFQGKAKHLRL 62

Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRT 136
             +  G+  +  + F S+ +++ +  T
Sbjct: 63  SLNGHGQCHVQHLWFQSVFDMLRHFHT 89

SH2B2 (APS), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198274 cd10411, SH2_SH2B2, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 20/87 (22%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 232 IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
           +E+ ++ W++G ++R  A +L+     +  G F+IR SE+ PG++ L+       +H ++
Sbjct: 3   LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGEYVLTFNFQGKAKHLRL 62

Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRT 315
             +  G+  +  + F S+ +++ +  T
Sbjct: 63  SLNGHGQCHVQHLWFQSVFDMLRHFHT 89

SH2B2 (APS), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMN--WY--RAELDGKEGLIPSNY 52
          I  HDFNA +EDEL+ +    ++++  +++    WY  R    G+ GL P  +
Sbjct: 3  IVIHDFNARSEDELTLKPGDKIELIEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212967 cd12034, SH3_MPP4, Src Homology 3 domain of Membrane Protein, Palmitoylated 4 (or MAGUK p55 subfamily member 4)

 Score = 39.9 bits (93), Expect = 8e-05
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 11/60 (18%)

Query: 157 VQALYDFTPQEPGE-------LEFRRGDVITVTDRSDQHWWHG----EIGARKGLFPATY 205
           V+A+ D+ PQ+          L FR+GD++ + D++D  WW      ++ A  GL P+ +
Sbjct: 2   VRAMVDYWPQQDPSIPCADAGLPFRKGDILQIVDQNDSLWWQARKLSDLAACAGLIPSNH 61

MPP4, also called Disks Large homolog 6 (DLG6) or Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein (ALS2CR5), is a retina-specific scaffolding protein that plays a role in organizing presynaptic protein complexes in the photoreceptor synapse, where it localizes to the plasma membrane. It is required in the proper localization of calcium ATPases and for maintenance of calcium homeostasis. MPP4 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG--EIGARKGLFPATYI 206
           +A+Y + PQ   ELE R GD + V  + D  W+ G      + G FP  Y+
Sbjct: 5   KAVYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI 53
          +A +D+ +  E +LSF+K + L+I+N  +   W    L  G+ G IPSNY+
Sbjct: 3  VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 53

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK--GLFPATYI 206
           V+A+Y +  +  G+L F  GD+I V    D  WW G++      G+FP+ ++
Sbjct: 2   VKAVYSWAGETEGDLGFLEGDLIEVLSIGDGSWWSGKLRRNGAEGIFPSNFV 53

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMN--WYRA-ELDGKEGLIPSNYIE 54
          +A +DF      +L   K +   +L   DD N  W+RA + +G EG IPSNY+ 
Sbjct: 3  VALYDFQPIEPGDLPLEKGEEYVVL---DDSNEHWWRARDKNGNEGYIPSNYVT 53

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212744 cd11810, SH3_RUSC1_like, Src homology 3 domain of RUN and SH3 domain-containing proteins 1 and 2

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNY 52
             A     AT   +LSFRK  +L+++   DD +W        +GL+P +Y
Sbjct: 1  VVRALCHHVATDSGQLSFRKGDILRVIARVDD-DWLLCTRGSTKGLVPLSY 50

RUSC1 and RUSC2, that were originally characterized in silico. They are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC2, also called Iporin, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGK-EGLIPSNYIE 54
          A +D+ A   DELSF K  ++  +  ED   W+R +  GK +   P+NY+E
Sbjct: 4  ALYDYRAQRPDELSFCKHAIITNVEKEDGG-WWRGDYGGKKQKWFPANYVE 53

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 27/79 (34%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
            + LYDF  Q   EL  + GDV+                         YIL+ +   +W+
Sbjct: 3   GKVLYDFDAQSDDELTVKEGDVV-------------------------YILDDKKSKDWW 37

Query: 217 RAELD--GKEGLIPSNYIE 233
             E    GKEG++P++YIE
Sbjct: 38  MVENVSTGKEGVVPASYIE 56

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-------DGKEGLIPSNY 52
          A +D+    EDEL+ ++  +L +L   DD +W++ +L       D   GL+P+ Y
Sbjct: 4  ALYDYEPQTEDELTIQEDDILYLLEKSDD-DWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
           +A+ DF    EDELSF +  V+ +     +  W + EL+GK G+ P N++
Sbjct: 2  CVARFDFEGEQEDELSFSEGDVITLKEYVGE-EWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +F       + F++G  + V D++   WW+ +I  ++G  P++YI
Sbjct: 7   EFQATIQDGISFQKGQKVEVIDKNPSGWWYVKIDGKEGWAPSSYI 51

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 28/80 (35%)

Query: 157 VQALYDFT--PQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
            +ALY +   P +P EL F +G+++ V+D S + WW     ARK                
Sbjct: 2   ARALYPYDASPDDPNELSFEKGEILEVSDTSGK-WWQ----ARKS--------------- 41

Query: 215 WYRAELDGKEGLIPSNYIEM 234
                 +G+ G+ PSNY+++
Sbjct: 42  ------NGETGICPSNYLQL 55

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 24/76 (31%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A+YD+   +  E+ F+ GDVI   +  D  W  G                          
Sbjct: 4   AMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEG------------------------TV 39

Query: 219 ELDGKEGLIPSNYIEM 234
           +  G+ G++P+NY+E+
Sbjct: 40  QRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212969 cd12036, SH3_MPP5, Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 7/40 (17%)

Query: 17 LSFRKSQVLKILNMEDDMNWYRAELDGKE------GLIPS 50
          LSF+K  +L +++ ED  NW++A  +G+E      GLIPS
Sbjct: 23 LSFQKGDILHVISQEDP-NWWQAYREGEEDNQSLAGLIPS 61

MPP5, also called PALS1 (Protein associated with Lin7) or Nagie oko protein in zebrafish or Stardust in Drosophila, is a scaffolding protein which associates with Crumbs homolog 1 (CRB1), CRB2, or CRB3 through its PDZ domain and with PALS1-associated tight junction protein (PATJ) or multi-PDZ domain protein 1 (MUPP1) through its L27 domain. The resulting tri-protein complexes are core proteins of the Crumb complex, which localizes at tight junctions or subapical regions, and is involved in the maintenance of apical-basal polarity in epithelial cells and the morphogenesis and function of photoreceptor cells. MPP5 is critical for the proper stratification of the retina and is also expressed in T lymphocytes where it is important for TCR-mediated activation of NFkB. Drosophila Stardust exists in several isoforms, some of which show opposing functions in photoreceptor cells, which suggests that the relative ratio of different Crumbs complexes regulates photoreceptor homeostasis. MPP5 contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPA 203
           A+  ++PQ  GE++  RG+ + V    +  +W G +  R G FPA
Sbjct: 5   AVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVKGRTGWFPA 49

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKIL-NMEDDMNWYRAELDGKEGLIPSNYI 53
          +A +D+ A   ++LSF+K +  +I+ N E D    R+   GK G IPSNY+
Sbjct: 4  VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 54

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           Q L+D     P EL F+RGD+I +  +      WW GE+    G+ P  Y+
Sbjct: 3   QGLWDCFGDNPDELSFQRGDLIYILSKEYNMYGWWVGELNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212864 cd11931, SH3_SH3RF3_2, Second Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 158 QALYDF----TPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALYDF      Q+   L F + +++TV  R D++W  G +G + G+FP  Y+
Sbjct: 3   KALYDFEIKDKDQDKDCLTFTKDEILTVIRRVDENWAEGMLGDKIGIFPILYV 55

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          A +DF A  ++EL+F+  +++ +L+ + D NW++ E     GL PSN++
Sbjct: 6  ALYDFEAVEDNELTFKHGEIIIVLD-DSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIE 54
          A +D+     DELSF+  + L  +  ED+  W +   D G  GL P+NY+E
Sbjct: 6  AVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYVE 56

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
          +    H + A   DEL+  +  V+ +L    D  WY  E   DG+ G  PS+Y E
Sbjct: 1  QVQCVHAYTAQQPDELTLEEGDVVNVLRKMPD-GWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 11 ATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
             EDEL  +    +++L   ++  W+  +L+GK G+ PSN+++ 
Sbjct: 10 PQNEDELELKVGDTIEVLGEVEE-GWWEGKLNGKVGVFPSNFVKE 53

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 55
          A A + + A  E+ LSF K  ++ +L  ++   W+  EL  G+EG  P +Y++ 
Sbjct: 2  ATALYPWRAKKENHLSFAKGDIITVLEQQE--MWWFGELEGGEEGWFPKSYVKE 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212845 cd11912, SH3_Bzz1_1, First Src Homology 3 domain of Bzz1 and similar domains

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW----HGEIGARKGLFPATYI 206
            + LYD+T     E+    G+ +TV +  D   W    +G     +GL P +YI
Sbjct: 2   AKVLYDYTASGDDEVSISEGEEVTVLEPDDGSGWTKVRNG--SGEEGLVPTSYI 53

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the first C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 5/38 (13%)

Query: 17 LSFRKSQVLKILNMEDDMNWYRA----ELDGKEGLIPS 50
          LSF+K  +L+I+N  DD NW++A    + +G+ GLIPS
Sbjct: 23 LSFKKGDILQIVNQ-DDPNWWQARKVGDPNGRAGLIPS 59

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIE 54
          A +D+    +DELSF +  +++ILN E  DD  ++  E +G+ G+ PS  +E
Sbjct: 4  ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVE 55

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212769 cd11835, SH3_ARHGAP32_33, Src homology 3 domain of Rho GTPase-activating proteins 32 and 33, and similar proteins

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 163 FTPQEPGELEFRRGDVITVTD---RSDQHWWHGEIGARKGLFP 202
           +T Q P EL    GD+++V D     +  WW G+ G + G FP
Sbjct: 8   YTAQAPDELSLEVGDIVSVIDMPPPEESTWWRGKKGFQVGFFP 50

Members of this family contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP32 is also called RICS, PX-RICS, p250GAP, or p200RhoGAP. It is a Rho GTPase-activating protein for Cdc42 and Rac1, and is implicated in the regulation of postsynaptic signaling and neurite outgrowth. PX-RICS, a variant of RICS that contain PX and SH3 domains, is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. ARHGAP33, also called sorting nexin 26 or TCGAP (Tc10/CDC42 GTPase-activating protein), is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212698 cd11764, SH3_Eps8, Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW-----HGEIG 195
            V+ LYDFT +   EL   +G+ + V D S Q WW      G++G
Sbjct: 1   YVRVLYDFTARNSKELSVLKGEYLEVLDDSRQ-WWKVRNSRGQVG 44

This group is composed of Eps8 and Eps8-like proteins including Eps8-like 1-3, among others. These proteins contain N-terminal Phosphotyrosine-binding (PTB), central SH3, and C-terminal effector domains. Eps8 binds either Abi1 (also called E3b1) or Rab5 GTPase activating protein RN-tre through its SH3 domain. With Abi1 and Sos1, it becomes part of a trimeric complex that is required to activate Rac. Together with RN-tre, it inhibits the internalization of EGFR. The SH3 domains of Eps8 and similar proteins recognize peptides containing a PxxDY motif, instead of the classical PxxP motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212972 cd12039, SH3_MPP3, Src Homology 3 domain of Membrane Protein, Palmitoylated 3 (or MAGUK p55 subfamily member 3)

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 13/60 (21%)

Query: 157 VQALYDFTP--------QEPGELEFRRGDVITVTDRSDQHWWH----GEIGARKGLFPAT 204
           ++AL+D+ P        QE G L F+R D++ V  + D  WW     G+   R GL P+ 
Sbjct: 2   MRALFDYNPYEDRAIPCQEAG-LPFKRRDILEVVSQDDPTWWQAKRVGDTNLRAGLIPSK 60

MPP3 is a scaffolding protein that colocalizes with MPP5 and CRB1 at the subdpical region adjacent to adherens junctions and may function in photoreceptor polarity. It interacts with some nectins and regulates their trafficking and processing. Nectins are cell-cell adhesion proteins involved in the establishment apical-basal polarity at cell adhesion sites. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVT-----DRSDQHWWHG--EIGARKGLFPATY 205
           V+A +D+T ++  EL F +GDVI V      +  D+ W  G  E    +G+FP  +
Sbjct: 5   VRATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFPENF 60

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212945 cd12012, SH3_RIM-BP_2, Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 13/60 (21%)

Query: 159 ALYDFTP--QEPG------ELEFRRGDVITV-TDRSDQHWWHGEIGARKGLFPATYILNM 209
           AL+D+ P    P       EL F+ G +I V  D+    ++ GEI  R+GL P     NM
Sbjct: 4   ALFDYDPLTMSPNPDAAEEELPFKEGQLIKVYGDKDADGFYLGEINGRRGLVPC----NM 59

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 8  DFNATAEDELSFRKSQVLKILNMEDDM--NWYRAELDGKEGLIPSNYI 53
          D+ A   DELSF++   + IL  +DD    W+ A L+ KEG +P N +
Sbjct: 8  DYEAQNADELSFQEGDAITILRRKDDSETEWWWARLNDKEGYVPKNLL 55

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL 207
           A +D+  +   EL F++G  + +  R+   WW G      GL P  YI+
Sbjct: 4   AKFDYVGRSARELSFKKGASLLLYHRASDDWWEGRHNGIDGLVPHQYIV 52

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A+  HDF A   D+LS    +++ +L  + D  WYR +     G+ P+N+++
Sbjct: 2  AVVLHDFPAEHSDDLSLNSGEIVYLLE-KIDTEWYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMED-DMNWY--RAELDGKEGLIPSNYIEM 55
           A +D+ A  +DE+SF++  V  I+N+E  D  W     +  G+ G++P+NY+E+
Sbjct: 3  RAMYDYAAADDDEVSFQEGDV--IINVEIIDDGWMEGTVQRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
            +A+YD+   +  E+ F+ GD I      D+ W +G +    + G+ PA Y+
Sbjct: 4   FRAMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYV 55

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212784 cd11850, SH3_Abl, Src homology 3 domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYI 53
          +A +DF A+ E++LS +K + L++L    +  W  AE    G +G +PSNYI
Sbjct: 3  VALYDFVASGENQLSIKKGEQLRVLGYNKNGEWCEAESKSTGGQGWVPSNYI 54

Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) PTK that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212966 cd12033, SH3_MPP7, Src Homology 3 domain of Membrane Protein, Palmitoylated 7 (or MAGUK p55 subfamily member 7)

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 11/61 (18%)

Query: 156 LVQALYDFTPQE-------PGELEFRRGDVITVTDRSDQHWWH----GEIGARKGLFPAT 204
            ++AL+D+ P E          L F++GD++ +  + D  WW     G+   R GL P+ 
Sbjct: 1   FIKALFDYNPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAKHEGDANPRAGLIPSK 60

Query: 205 Y 205
           +
Sbjct: 61  H 61

MPP7 is a scaffolding protein that binds to DLG1 and promotes tight junction formation and epithelial cell polarity. Mutations in the MPP7 gene may be associated with the pathogenesis of diabetes and extreme bone mineral density. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212844 cd11911, SH3_CIP4-like, Src Homology 3 domain of Cdc42-Interacting Protein 4

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIEM 55
            A +DF+ T+E  LS  + ++L +L  +    W R  + +G EG +P++YIE+
Sbjct: 2  CTALYDFDGTSEGTLSMEEGEILLVLEEDGGDGWTRVRKNNGDEGYVPTSYIEV 55

This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. It functions downstream of Cdc42 in PDGF-dependent actin reorganization and cell migration, and also regulates the activity of PDGFRbeta. It uses Src as a substrate in regulating the invasiveness of breast tumor cells. CIP4 may also play a role in the pathogenesis of Huntington's disease. Members of this subfamily typically contain an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of CIP4 associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A A +++      +L F K  ++ IL  + D NWY  E++G  G  P+N++++
Sbjct: 3  AKALYNYEGKEPGDLKFSKGDII-ILRRQVDENWYHGEVNGIHGFFPTNFVQI 54

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A A +D+ A  + E+SF    ++  +   D+  W     DG  GL P+NY+E+
Sbjct: 2  ARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVEL 54

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212833 cd11900, SH3_Nck1_1, First Src Homology 3 domain of Nck1 adaptor protein

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN 57
          +AK D+ A  + EL  +K++ L +L  +D  +W+R      K G +PSNY+E KN
Sbjct: 6  VAKFDYVAQQDQELDIKKNERLWLL--DDSKSWWRVRNAMNKTGFVPSNYVERKN 58

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck1 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 15/49 (30%), Positives = 30/49 (61%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +A+ D+      E+  + GDV+ V ++S+  WW  ++ A++G  PA+Y+
Sbjct: 3   RAIADYEKSSKSEMALKTGDVVEVVEKSENGWWFCQLKAKRGWVPASYL 51

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212799 cd11865, SH3_Nbp2-like, Src Homology 3 domain of Saccharomyces cerevisiae Nap1-binding protein 2 and similar fungal proteins

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--HGEIGARKGLFPATYI 206
           ALYDF P+   EL F  G ++ +  +  Q W     E G + GL P  ++
Sbjct: 4   ALYDFEPEHDNELGFAEGQILFILYKHGQGWLIAEDESGGKTGLVPEEFV 53

This subfamily includes Saccharomyces cerevisiae Nbp2 (Nucleosome assembly protein 1 (Nap1)-binding protein 2), Schizosaccharomyces pombe Skb5, and similar proteins. Nbp2 interacts with Nap1, which is essential for maintaining proper nucleosome structures in transcription and replication. It is also the binding partner of the yeast type II protein phosphatase Ptc1p and serves as a scaffolding protein that brings seven kinases in close contact to Ptc1p. Nbp2 plays a role many cell processes including organelle inheritance, mating hormone response, cell wall stress, mitotic cell growth at elevated temperatures, and high osmolarity. Skb5 interacts with the p21-activated kinase (PAK) homolog Shk1, which is critical for fission yeast cell viability. Skb5 activates Shk1 and plays a role in regulating cell morphology and growth under hypertonic conditions. Nbp2 and Skb5 contain an SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212729 cd11795, SH3_DNMBP_N2, Second N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFP 202
            FT QEPG L  +RGD++ +T  +D  W  G       G FP
Sbjct: 7   AFTSQEPGHLNLQRGDLVELTGTTDSGWLQGRSCWGSSGFFP 48

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGL-IPSNYIE 54
          A  D+ A  EDEL+F K+ +++ +  ++   W+R +  GK+ L  PSNY+E
Sbjct: 8  ALFDYKAQREDELTFTKNAIIQNVEKQEG-GWWRGDYGGKKQLWFPSNYVE 57

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212934 cd12001, SH3_BCAR1, Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDM--NWYRAELDGKEGLIPSNYIEM 55
          A A +D  A + DELSFRK  ++ +L  +      W+   L G++G++P N +++
Sbjct: 5  AKALYDNVAESPDELSFRKGDIMTVLERDTQGLDGWWLCSLHGRQGIVPGNRLKI 59

BCAR1, also called p130cas or CASS1, is the founding member of the CAS family of scaffolding proteins and was originally identified through its ability to associate with Crk. The name BCAR1 was designated because the human gene was identified in a screen for genes that promote resistance to tamoxifen. It is widely expressed and its deletion is lethal in mice. It plays a role in regulating cell motility, survival, proliferation, transformation, cancer progression, and bacterial pathogenesis. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 29/53 (54%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A+  +D+    ++E+   + +++  + M D+  W      G+ GL PSNY+E+
Sbjct: 2  AVVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSKGESGLFPSNYVEL 54

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQ-VLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A +D+NA  EDE+SF+    ++ +  ++D   +   E  G  G++P+NY+E
Sbjct: 7  AVYDYNAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 57

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212691 cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3 domain-binding protein 4

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V A+ D+ P     L+F +GD + V D S   WW+       G  P++Y+
Sbjct: 2   VVAIKDYCPTNFTTLKFSKGDHLYVLDTSGGEWWYAHNTTEMGYIPSSYV 51

SH3 domain-binding protein 4 (SH3BP4) is also called transferrin receptor trafficking protein (TTP). SH3BP4 is an endocytic accessory protein that interacts with endocytic proteins including clathrin and dynamin, and regulates the internalization of the transferrin receptor (TfR). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 13/51 (25%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A +D+   +  E+S +K  +L +LN   + +W++ E++ ++G +P+ Y++
Sbjct: 3  VALYDYQEKSPREVSMKKGDILTLLN-SSNKDWWKVEVNDRQGFVPAAYVK 52

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212891 cd11958, SH3_RUSC1, Src homology 3 domain of RUN and SH3 domain-containing protein 1

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
           V+AL D    E  +L FR+G+ + V    D+ W     G R+GL P  Y
Sbjct: 2   VRALCDHAGSE-SQLSFRKGEELQVLGTVDEDWIRCRRGDREGLVPVGY 49

RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212944 cd12011, SH3_SLAP2, Src homology 3 domain of Src-Like Adaptor Protein 2

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYI 53
          A+A  +F +    ELS R  + L IL+  +D +W+   + + G+E  IPSNY+
Sbjct: 2  AVALCNFPSGGPTELSIRMGEQLTILS--EDGDWWKVSSAVTGRECYIPSNYV 52

SLAP2 plays a role in c-Cbl-dependent regulation of CSF1R, a tyrosine kinase important for myeloid cell growth and differentiation. It has been shown to interact with CSF1R, c-Cbl, LAT, CD247, and Zap70. SLAPs are adaptor proteins with limited similarity to Src family tyrosine kinases. They contain an N-terminal SH3 domain followed by an SH2 domain, and a unique C-terminal sequence. They function in regulating the signaling, ubiquitination, and trafficking of T-cell receptor (TCR) and B-cell receptor (BCR) components. The SH3 domain of SLAP forms a complex with v-Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212948 cd12015, SH3_Tks_1, First Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           D+  Q+P E+  R GDV+ V ++++  WW   +   +G  PATY+
Sbjct: 7   DYKKQQPNEISLRAGDVVDVIEKNENGWWFVSLEDEQGWVPATYL 51

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the first SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 37.3 bits (86), Expect = 6e-04
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           A+Y +TP++  ELE R+G++  V +R    W+ G     ++ G+FP  Y+
Sbjct: 4   AIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYV 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 37.3 bits (86), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWH-GEIGARKGLFPATYI 206
           +VQALY F+     EL F +G+V+ V ++  +D  WW   +   + GL P  Y+
Sbjct: 2   VVQALYPFSSSNDEELNFEKGEVMDVIEKPENDPEWWKCRKANGQVGLVPKNYV 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A   + A+  ++L F+K  V+ +L+  ++ +W   +  GK G+ PS ++E
Sbjct: 3  VALFSYEASQPEDLEFQKGDVILVLSKVNE-DWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212997 cd12064, SH3_GRAF, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A A +   A  + ELSF    V   ++   +  W    L+GK GLIP NY+E
Sbjct: 2  KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 54

GRAF, also called Rho GTPase activating protein 26 (ARHGAP26), Oligophrenin-1-like (OPHN1L) or GRAF1, is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. It is essential for the major clathrin-independent endocytic pathway mediated by pleiomorphic membranes. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212745 cd11811, SH3_CHK, Src Homology 3 domain of CSK homologous kinase

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPS 50
          + + K D       EL+F K  ++ I+   +   WYRA  +  G+EGL+ +
Sbjct: 3  QCVTKKDHTKPKPGELAFHKGDIVTIVETCERKGWYRARHNTSGEEGLVAA 53

CHK is also referred to as megakaryocyte-associated tyrosine kinase (Matk). It inhibits Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. To inhibit Src kinases that are anchored to the plasma membrane, CHK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CHK also plays a role in neural differentiation in a manner independent of Src by enhancing MAPK activation via Ras-mediated signaling. It is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|198205 cd10342, SH2_SAP1, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP)1

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 60  WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
            Y+G+I+R   E+LL +   +G++L+R SES PG + L V     +  ++V +  +G +
Sbjct: 5   VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSW 63

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|198205 cd10342, SH2_SAP1, Src homology 2 (SH2) domain found in SLAM-associated protein (SAP)1

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 239 WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
            Y+G+I+R   E+LL +   +G++L+R SES PG + L V     +  ++V +  +G +
Sbjct: 5   VYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSW 63

The X-linked lymphoproliferative syndrome (XLP) gene encodes SAP (also called SH2D1A/DSHP) a protein that consists of a 5 residue N-terminus, a single SH2 domain, and a short 25 residue C-terminal tail. XLP is characterized by an extreme sensitivity to Epstein-Barr virus. Both T and natural killer (NK) cell dysfunctions have been seen in XLP patients. SAP binds the cytoplasmic tail of Signaling lymphocytic activation molecule (SLAM), 2B4, Ly-9, and CD84. SAP is believed to function as a signaling inhibitor, by blocking or regulating binding of other signaling proteins. SAP and the SAP-like protein EAT-2 recognize the sequence motif TIpYXX[VI], which is found in the cytoplasmic domains of a restricted number of T, B, and NK cell surface receptors and are proposed to be natural inhibitors or regulators of the physiological role of a small family of receptors on the surface of these cells. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 103

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 16 ELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          +L F K  ++ IL  + D NWY  EL+G  G +P++YI+ 
Sbjct: 16 DLKFNKGDII-ILRRKVDENWYHGELNGCHGFLPASYIQC 54

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG-----KEGLIPSNYIE 54
           A + + +  ED+L+F   Q++ +   ED  +WY  E        KEG+ P N++E
Sbjct: 5  KALYPYESDHEDDLNFDVGQLITVTEEEDA-DWYFGEYVDSNGNTKEGIFPKNFVE 59

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 15 DELSFRKSQVLKILNMEDDM-NWYRAELDGKEGLIPSNYI 53
          DELSF++   + IL+ E +   W+  E+ G  GL+P  YI
Sbjct: 14 DELSFKRGDTIYILSKEYNRFGWWVGEMKGTIGLVPKAYI 53

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 36.9 bits (85), Expect = 9e-04
 Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRA-ELDGKEGLIPSNYI 53
          A + F+++ ++EL+F K +V+ ++   E+D  W++  + +G+ GL+P NY+
Sbjct: 5  ALYPFSSSNDEELNFEKGEVMDVIEKPENDPEWWKCRKANGQVGLVPKNYV 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKI-LNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A + F A   DE+SF+   ++++  +   +  W   EL GK G  P+NY+E
Sbjct: 4  ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVE 54

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 25/76 (32%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
           V A YDF P    +L+ ++G+ + V  +SD  WW                          
Sbjct: 2   VIAQYDFVPSNERDLQLKKGEKLQVL-KSDGEWWLA------------------------ 36

Query: 217 RAELDGKEGLIPSNYI 232
           ++   GKEG IPSNY+
Sbjct: 37  KSLTTGKEGYIPSNYV 52

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIEMKN 57
          A +D++A  EDE+SFR    +  +   D+   Y   +  G+ G++P+NYIE  N
Sbjct: 5  AMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYIEFVN 58

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG-KEGLIPSNYIE 54
          A +DF  +  +ELS +K  ++ I+  ED+  W   +LD  KEG +P+ Y+E
Sbjct: 4  ALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLE 54

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212886 cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of Apoptosis Stimulating of p53 protein 2

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 8  DFNATAEDELSFRKSQVLKILNMED--DMNWYRAELDGKEGLIPSN 51
          D+   ++DELSF++   + IL  ED  +  W+ A L+ KEG +P N
Sbjct: 8  DYEGESDDELSFKEGDCMTILRREDEDETEWWWARLNDKEGYVPRN 53

ASPP2 is the full length form of the previously-identified tumor supressor, p53-binding protein 2 (p53BP2). ASPP2 activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). It plays a central role in regulating apoptosis and cell growth; ASPP2-deficient mice show postnatal death. Downregulated expression of ASPP2 is frequently found in breast tumors, lung cancer, and diffuse large B-cell lymphoma where it is correlated with a poor clinical outcome. ASPP2 contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP2 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212874 cd11941, SH3_ARHGEF37_C2, Second C-terminal Src homology 3 domain of Rho guanine nucleotide exchange factor 37

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYI 53
          + +A + F A ++ E+S +  Q + +L   D      W   E++G+ G +PS+Y+
Sbjct: 1  QVVAAYPFTARSKHEVSLQAGQPVTVLEPHDKKGSPEWSLVEVNGQRGYVPSSYL 55

ARHGEF37 contains a RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. Its specific function is unknown. Its domain architecture is similar to the C-terminal half of DNMBP or Tuba, a cdc42-specific GEF that provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics, and plays an important role in regulating cell junction configuration. GEFs activate small GTPases by exchanging bound GDP for free GTP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          + A  K ++ A  EDELS  K   + ++    D  W+R   +G+ G  PSNY+
Sbjct: 2  LPAYVKFNYTAEREDELSLVKGTKVIVMEKCSD-GWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212832 cd11899, SH3_Nck2_1, First Src Homology 3 domain of Nck2 adaptor protein

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK 56
          IAK D+ A  + EL  +K++ L +L  +D   W+R      + G +PSNY+E K
Sbjct: 7  IAKWDYTAQQDQELDIKKNERLWLL--DDSKTWWRVRNAANRTGYVPSNYVERK 58

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck2 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
           VQ +  +  QE  EL   + D+I V  +S   W  G       +G FP +++
Sbjct: 2   VQCIRSYKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGERGWFPQSHV 53

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 332 EECLVQALYDFTPQEPGELEFRRD 355
           E   V+ALYD+T Q+P EL F++ 
Sbjct: 1   EGPQVRALYDYTAQDPDELSFKKG 24

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          A A  D      +EL F+   V+++L+M D  +W+   +  +EG  P++++
Sbjct: 2  AEALWDHVTMDPEELGFKAGDVIEVLDMSDK-DWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          + +A H + A   ++L FR+   + +L+ E +  W     DG+ G+ P  ++ 
Sbjct: 1  QVVALHRYEAQGPEDLGFREGDTIDVLS-EVNEAWLEGHSDGRVGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 24/75 (32%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYR 217
           +AL+ +      EL+F+ G++I +  +       GE G                   W++
Sbjct: 5   KALFHYEGTNEDELDFKEGEIILIISKDT-----GEPG-------------------WWK 40

Query: 218 AELDGKEGLIPSNYI 232
            EL+GKEG+ P N++
Sbjct: 41  GELNGKEGVFPDNFV 55

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212699 cd11765, SH3_Nck_1, First Src Homology 3 domain of Nck adaptor proteins

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYI 206
            V A YD+T Q   EL  ++ + +T+ D S +HWW  +  + + G  P+ Y+
Sbjct: 1   YVVAKYDYTAQGDQELSIKKNEKLTLLDDS-KHWWKVQNSSNQTGYVPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The first SH3 domain of Nck proteins preferentially binds the PxxDY sequence, which is present in the CD3e cytoplasmic tail. This binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 8  DFNATAEDELSFRKSQVLKILNMEDDM-NWYRAELDGKEGLIPSNYI 53
          D      DELSF++  ++ IL+ E +M  W+  EL+G  G++P +Y+
Sbjct: 7  DCFGDNPDELSFQRGDLIYILSKEYNMYGWWVGELNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 163 FTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           + PQ   ELE + GD++ V  + +  W+ G +    + GLFP +++
Sbjct: 8   YPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFV 53

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
           AL+ ++   P ELE ++G+ + V  +  + W  G   +  R G+FP+ Y+
Sbjct: 4   ALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGRVGIFPSNYV 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212998 cd12065, SH3_GRAF2, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 2

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          +A A +   A    ELSF    + + + +  +  W    L+GK GLIP NY+E+
Sbjct: 1  KAKAVYPCEAEHSSELSFEVGAIFEDVTLSREPGWLEGTLNGKRGLIPENYVEI 54

GRAF2, also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA. It regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle, and is involved in alpha-catenin recruitment at cell-cell junctions. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212947 cd12014, SH3_RIM-BP_1, First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 10 NATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE 54
          N   E EL       + +    D+  +Y  EL DG+ GL+PSN++E
Sbjct: 16 NENPEAELPLNAGDYVYVYGDMDEDGFYEGELLDGRRGLVPSNFVE 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212722 cd11788, SH3_RasGAP, Src Homology 3 domain of Ras GTPase-Activating Protein 1

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 3  AIAKHDFNATAE-DELSFRKSQVLKILN-MEDDMNWYRAELDGKEGLIPSNYIE 54
            A   +N   + DELSF+K  +  + N +ED   W  +   G+ GL+  + +E
Sbjct: 4  VRAILPYNKVPDTDELSFQKGDIFVVHNELEDGWLWVTSLRTGESGLVFRDLVE 57

RasGAP, also called Ras p21 protein activator, RASA1, or p120RasGAP, is part of the GAP1 family of GTPase-activating proteins. It is a 120kD cytosolic protein containing an SH3 domain flanked by two SH2 domains at the N-terminal end, a pleckstrin homology (PH) domain, a calcium dependent phospholipid binding domain (CaLB/C2), and a C-terminal catalytic GAP domain. It stimulates the GTPase activity of normal RAS p21. It acts as a positive effector of Ras in tumor cells. It also functions as a regulator downstream of tyrosine receptors such as those of PDGF, EGF, ephrin, and insulin, among others. The SH3 domain of RasGAP is unable to bind proline-rich sequences but have been shown to interact with protein partners such as the G3BP protein, Aurora kinases, and the Calpain small subunit 1. The RasGAP SH3 domain is necessary for the downstream signaling of Ras and it also influences Rho-mediated cytoskeletal reorganization. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPAT 204
           VQ ++ +  QEP EL     DV+ + D++D  W  GE      +G FP++
Sbjct: 2   VQCVHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSS 51

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-----GLFPATYI 206
           PE  + Q +  +T   P +L    G +I +  ++   WW GE+ AR      G FPA Y+
Sbjct: 3   PE--IAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYV 60

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH---GEIGAR--KGLFPATYI 206
           AL+DF  +   EL F+ GD   + +RS   W        G    +G  P  Y+
Sbjct: 4   ALWDFKARGDEELSFQAGDQFRIAERSGDWWTALKLDRAGGVVAQGFVPNNYL 56

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|198273 cd10410, SH2_SH2B1, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 55  MKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
           +  + W++G ++R  A +L+        G FL+R SE+  G++ L+       +H ++  
Sbjct: 5   LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGEYVLTFNFQGKAKHLRLSL 64

Query: 112 DSSGKFFLWVVKFNSLNELVEYHR 135
           +  G+  +  + F S+ +++E+ R
Sbjct: 65  NEEGQCRVQHLWFQSIFDMLEHFR 88

SH2B1 (SH2-B, PSM), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198273 cd10410, SH2_SH2B1, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 234 MKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
           +  + W++G ++R  A +L+        G FL+R SE+  G++ L+       +H ++  
Sbjct: 5   LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGEYVLTFNFQGKAKHLRLSL 64

Query: 291 DSSGKFFLWVVKFNSLNELVEYHR 314
           +  G+  +  + F S+ +++E+ R
Sbjct: 65  NEEGQCRVQHLWFQSIFDMLEHFR 88

SH2B1 (SH2-B, PSM), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B1 and SH2B2 function in signaling pathways found downstream of growth hormone receptor and receptor tyrosine kinases, including the insulin, insulin-like growth factor-I (IGF-I), platelet-derived growth factor (PDGF), nerve growth factor, hepatocyte growth factor, and fibroblast growth factor receptors. SH2B2beta, a new isoform of SH2B2, is an endogenous inhibitor of SH2B1 and/or SH2B2 (SH2B2alpha), negatively regulating insulin signaling and/or JAK2-mediated cellular responses. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|212736 cd11802, SH3_Endophilin_B, Src homology 3 domain of Endophilin-B

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITV--TDRSDQHWWHGEIGARKGLFPATY 205
            LYD+  ++  EL     +VITV      D+ +  GE G+++G  P  Y
Sbjct: 4   VLYDYDAEDSTELSLLADEVITVYELPGMDEDYMMGERGSQRGKVPVAY 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            +ALYD+  Q+  EL F++ 
Sbjct: 2   ARALYDYEAQDDDELSFKKG 21

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A A  ++      +L F K  V+ +L  + D NWY  E++G  G+ P++ +E+
Sbjct: 3  AKALCNYRGHNPGDLKFNKGDVI-LLRRQLDENWYLGEINGVSGIFPASSVEV 54

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212840 cd11907, SH3_TXK, Src Homology 3 domain of TXK, also called Resting lymphocyte kinase (Rlk)

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          ++  A +DF       L+ ++++   IL   D   W   +  G EGLIPSNY+
Sbjct: 1  IQVKALYDFLPREPSNLALKRAEEYLILEQYDPHWWKARDRYGNEGLIPSNYV 53

TXK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal cysteine-rich region. Rlk is expressed in T-cells and mast cell lines, and is a key component of T-cell receptor (TCR) signaling. It is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKE-GLIPSNYI 53
          A A +D++   E+ELSF +   L + + + D +W     +G + G +P+NYI
Sbjct: 2  AKALYDYDKQTEEELSFNEGDTLDVYD-DSDSDWILVGFNGTQFGFVPANYI 52

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG--EIGARKGLFPATYI 206
           +A+YD+   +  E+ F+ GD I    + D  W +G  E     G+ PA Y+
Sbjct: 6   RAVYDYNAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 56

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|198174 cd09918, SH2_Nterm_SPT6_like, N-terminal Src homology 2 (SH2) domain found in Spt6

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 65  ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV-QHFKVL-RDSSGKFFLWVV 122
           +    AE  L +K  G  +IR S       +++ K +DGV QH  +   +    F L   
Sbjct: 8   VNYKQAEAYLKSKDVGEVVIRPSSKGVDHLTVTWKVADGVYQHIDIEELNKENPFSLGKE 67

Query: 123 ------KFNSLNELVEYH 134
                 ++  L+E++   
Sbjct: 68  LIIGGEEYEDLDEIIARF 85

N-terminal SH2 domain in Spt6. Spt6 is an essential transcription elongation factor and histone chaperone that binds the C-terminal repeat domain (CTD) of RNA polymerase II. Spt6 contains a tandem SH2 domain with a novel structure and CTD-binding mode. The tandem SH2 domain binds to a serine 2-phosphorylated CTD peptide in vitro, whereas its N-terminal SH2 subdomain does not. CTD binding requires a positively charged crevice in the C-terminal SH2 subdomain, which lacks the canonical phospho-binding pocket of SH2 domains. The tandem SH2 domain is apparently required for transcription elongation in vivo as its deletion in cells is lethal in the presence of 6-azauracil. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 85

>gnl|CDD|198174 cd09918, SH2_Nterm_SPT6_like, N-terminal Src homology 2 (SH2) domain found in Spt6

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 244 ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV-QHFKVL-RDSSGKFFLWVV 301
           +    AE  L +K  G  +IR S       +++ K +DGV QH  +   +    F L   
Sbjct: 8   VNYKQAEAYLKSKDVGEVVIRPSSKGVDHLTVTWKVADGVYQHIDIEELNKENPFSLGKE 67

Query: 302 ------KFNSLNELVEYH 313
                 ++  L+E++   
Sbjct: 68  LIIGGEEYEDLDEIIARF 85

N-terminal SH2 domain in Spt6. Spt6 is an essential transcription elongation factor and histone chaperone that binds the C-terminal repeat domain (CTD) of RNA polymerase II. Spt6 contains a tandem SH2 domain with a novel structure and CTD-binding mode. The tandem SH2 domain binds to a serine 2-phosphorylated CTD peptide in vitro, whereas its N-terminal SH2 subdomain does not. CTD binding requires a positively charged crevice in the C-terminal SH2 subdomain, which lacks the canonical phospho-binding pocket of SH2 domains. The tandem SH2 domain is apparently required for transcription elongation in vivo as its deletion in cells is lethal in the presence of 6-azauracil. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 85

>gnl|CDD|212999 cd12066, SH3_GRAF3, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 3

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A A +   A    ELSF +  +   +    +  W +A  +GK GL+P NY+ 
Sbjct: 1  QAKAMYSCKAEHSHELSFPQGAIFSNVYPSVEPGWLKATYEGKTGLVPENYVV 53

GRAF3 is also called Rho GTPase activating protein 42 (ARHGAP42) or ARHGAP10-like. Though its function has not been characterized, it may be a GAP with activity towards RhoA and Cdc42, based on its similarity to GRAF and GRAF2. It contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 14 EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          EDEL  +   ++ I N E +  W+   L+GK GL PSN+++
Sbjct: 14 EDELELKVGDIIDI-NEEVEEGWWSGTLNGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212890 cd11957, SH3_RUSC2, Src homology 3 domain of RUN and SH3 domain-containing protein 2

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 11 ATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI 53
          AT   +LSF K  +L++L+  D  +W R  L    GL+P  Y+
Sbjct: 10 ATEPGQLSFNKGDILQVLSRADG-DWLRCSLGPDSGLVPIAYV 51

RUSC2, also called Iporin or Interacting protein of Rab1, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 7  HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKE-----GLIPSNYIEM 55
            F ATAE++LS    Q++ +        W+  EL  +      G  P+NY+++
Sbjct: 6  APFTATAENQLSLAVGQLVLVRKKSPS-GWWEGELQARGKKRQIGWFPANYVKL 58

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212966 cd12033, SH3_MPP7, Src Homology 3 domain of Membrane Protein, Palmitoylated 7 (or MAGUK p55 subfamily member 7)

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 5/43 (11%)

Query: 14 EDELSFRKSQVLKILNMEDDMNWYRAELDG----KEGLIPSNY 52
          E  LSF+K  +L+I++ +DD  W++A+ +G    + GLIPS +
Sbjct: 20 EAGLSFKKGDILQIMS-QDDATWWQAKHEGDANPRAGLIPSKH 61

MPP7 is a scaffolding protein that binds to DLG1 and promotes tight junction formation and epithelial cell polarity. Mutations in the MPP7 gene may be associated with the pathogenesis of diabetes and extreme bone mineral density. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +++T +   EL   +G  + V ++    WW G    + G FP+ Y+
Sbjct: 8   FNYTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212804 cd11871, SH3_p67phox_N, N-terminal (or first) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 7  HDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          ++F    ++EL      ++ +L    D NW     +GK+GL+P N++E
Sbjct: 6  YEFVPETKEELQVLPGNIVFVLKKGTD-NWATVVFNGKKGLVPCNFLE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. The N-terminal SH3 domain increases the affinity of p67phox for the oxidase complex. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212780 cd11846, SH3_Srms, Src homology 3 domain of Srms Protein Tyrosine Kinase

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-------GLFPATYILN 208
           L  ALYDFT +   EL   +GD + V +    +     I ARK       GL PA+Y+  
Sbjct: 1   LFTALYDFTARSTHELSVEQGDKLCVIEEEGDY-----IFARKLTGNPESGLVPASYVAQ 55

Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristoylation sites (Srms) is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Srms lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|198275 cd10412, SH2_SH2B3, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 60  WYYGRITRADAERLLSNK---HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 116
           W++G I+R  A +L+  +     G FL+R SE+  G++ L+       +H ++     G+
Sbjct: 10  WFHGPISRVKAAQLVQLQGPDAHGVFLVRQSETRRGEYVLTFNFQGRAKHLRLSLTERGQ 69

Query: 117 FFLWVVKFNSLNELVEYHR 135
             +  + F S+ +++ + +
Sbjct: 70  CRVQHLHFPSVVDMLHHFQ 88

SH2B3 (Lnk), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|198275 cd10412, SH2_SH2B3, Src homology 2 (SH2) domain found in SH2B adapter proteins (SH2B1, SH2B2, SH2B3)

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 239 WYYGRITRADAERLLSNK---HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 295
           W++G I+R  A +L+  +     G FL+R SE+  G++ L+       +H ++     G+
Sbjct: 10  WFHGPISRVKAAQLVQLQGPDAHGVFLVRQSETRRGEYVLTFNFQGRAKHLRLSLTERGQ 69

Query: 296 FFLWVVKFNSLNELVEYHR 314
             +  + F S+ +++ + +
Sbjct: 70  CRVQHLHFPSVVDMLHHFQ 88

SH2B3 (Lnk), like other members of the SH2B adapter protein family, contains a pleckstrin homology domain, at least one dimerization domain, and a C-terminal SH2 domain which binds to phosphorylated tyrosines in a variety of tyrosine kinases. SH2B3 negatively regulates lymphopoiesis and early hematopoiesis. The lnk-deficiency results in enhanced production of B cells, and expansion as well as enhanced function of hematopoietic stem cells (HSCs), demonstrating negative regulatory functions of Sh2b3/Lnk in cytokine signaling. Sh2b3/Lnk also functions in responses controlled by cell adhesion and in crosstalk between integrin- and cytokine-mediated signaling. In general SH2 domains are involved in signal transduction. They typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites. Length = 97

>gnl|CDD|212876 cd11943, SH3_JIP1, Src homology 3 domain of JNK-interacting protein 1

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG---EIGARKGLFPATY 205
           +A++ F P+ P ELE    D + V  +++ +W+       GAR G+FPA Y
Sbjct: 3   RAVFRFVPRHPDELELEVDDPLLVEVQAEDYWYEAYNMRTGAR-GIFPAYY 52

JNK-interacting protein 1 (JIP1) is also called Islet-brain 1 (IB1) or Mitogen-activated protein kinase 8-interacting protein 1 (MAPK8IP1). It is highly expressed in neurons, where it functions as an adaptor linking motor to cargo during axonal transport. It also affects microtubule dynamics in neurons. JIP1 is also found in pancreatic beta-cells, where it is involved in regulating insulin secretion. In addition to a JNK binding domain, JIP1 also contains SH3 and Phosphotyrosine-binding (PTB) domains. Its SH3 domain homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
KOG4226|consensus	379		100.0
KOG1264|consensus	1267		100.0
KOG3601|consensus	222		100.0
KOG4278|consensus	1157		100.0
KOG0790|consensus	600		99.95
KOG2996|consensus	865		99.95
KOG0197|consensus	468		99.95
KOG2996|consensus	865		99.94
KOG4226|consensus	379		99.94
KOG4637|consensus	464		99.94
KOG1029|consensus	1118		99.93
KOG3601|consensus	222		99.92
KOG4278|consensus	1157		99.91
KOG4792|consensus	293		99.89
KOG4225|consensus	489		99.86
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.85
KOG4792|consensus	293		99.85
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.85
KOG4348|consensus	627		99.84
KOG4348|consensus	627		99.84
KOG1264|consensus	1267		99.83
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.82
KOG1029|consensus	1118		99.82
KOG0197|consensus	468		99.79
KOG0194|consensus	474		99.69
KOG4637|consensus	464		99.68
KOG4225|consensus	489		99.65
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.63
smart00252	84	SH2 Src homology 2 domains. Src homology 2 domains	99.61
PF00017	77	SH2: SH2 domain; InterPro: IPR000980 The Src homol	99.58
cd00173	94	SH2 Src homology 2 domains; Signal transduction, i	99.57
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.45
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.45
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.38
KOG3632|consensus	1335		99.33
KOG0790|consensus	600		99.26
KOG2199|consensus	462		99.23
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.21
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.18
KOG2070|consensus	661		99.18
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.16
KOG2199|consensus	462		99.15
KOG1930|consensus	483		99.12
KOG1118|consensus	366		99.11
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.11
KOG2070|consensus	661		98.99
KOG0515|consensus	752		98.94
KOG1118|consensus	366		98.86
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.83
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.8
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	98.73
KOG0162|consensus	1106		98.71
KOG2546|consensus	483		98.68
KOG3875|consensus	362		98.49
KOG2856|consensus	472		98.34
KOG0515|consensus	752		98.33
KOG1930|consensus	483		98.32
KOG2546|consensus	483		98.28
KOG0194|consensus	474		98.23
KOG3697|consensus	345		98.17
KOG3875|consensus	362		98.01
KOG3751|consensus	622		97.97
KOG3655|consensus	484		97.94
KOG1702|consensus	264		97.9
KOG2528|consensus	490		97.8
KOG3523|consensus	695		97.75
KOG1843|consensus	473		97.75
PF14633	220	SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_	97.72
KOG1856|consensus	1299		97.71
KOG3557|consensus	721		97.7
KOG2222|consensus	848		97.66
KOG3771|consensus	460		97.41
KOG3632|consensus	1335		97.4
KOG4773|consensus	386		97.34
KOG4773|consensus	386		97.27
KOG0609|consensus	542		97.24
KOG4575|consensus	874		97.2
KOG2222|consensus	848		97.11
KOG3523|consensus	695		97.05
KOG3751|consensus	622		96.67
KOG3557|consensus	721		96.51
KOG4429|consensus	421		96.45
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	96.4
KOG4566|consensus	258		96.35
KOG0609|consensus	542		96.24
KOG3565|consensus	640		96.23
KOG3775|consensus	482		96.08
KOG1451|consensus	812		95.91
KOG2528|consensus	490		95.86
KOG3771|consensus	460		95.76
KOG4575|consensus	874		95.76
KOG3508|consensus	932		95.63
KOG3697|consensus	345		95.41
KOG3725|consensus	375		95.13
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	95.1
PRK10884	206	SH3 domain-containing protein; Provisional	95.06
smart00287	63	SH3b Bacterial SH3 domain homologues.	94.55
KOG3775|consensus	482		94.52
KOG0199|consensus	1039		94.33
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	93.62
KOG1856|consensus	1299		93.26
KOG0040|consensus	2399		93.02
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	92.14
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	91.82
KOG0040|consensus	2399		90.34
KOG0199|consensus	1039		90.05
COG3103	205	SH3 domain protein [Signal transduction mechanisms	89.53
KOG3565|consensus	640		89.38
smart00287	63	SH3b Bacterial SH3 domain homologues.	88.7
KOG4566|consensus	258		87.84
KOG3812|consensus	475		87.17
PF02762	86	Cbl_N3: CBL proto-oncogene N-terminus, SH2-like do	86.83
KOG0162|consensus	1106		86.32
KOG3705|consensus	580		86.3
KOG2856|consensus	472		86.08
PRK10884	206	SH3 domain-containing protein; Provisional	84.39
PRK13914	481	invasion associated secreted endopeptidase; Provis	83.42
KOG3705|consensus	580		82.24
PF12913	54	SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.	81.96

>KOG4226|consensus

Probab=100.00  E-value=3.7e-44  Score=298.80  Aligned_cols=256  Identities=33%  Similarity=0.576  Sum_probs=198.8

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCCc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEG   80 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G   80 (376)
                      |.+++.|.|+|+.++||++-+|+.|.|+++ ..+|||.|..+|+.||||+||+......               .....+
T Consensus       108 t~AvVKf~Y~a~~eDELsLtKGtrv~vmEK-ssDGWWrG~~ng~VGWFPSNYv~E~~ds---------------~~gd~~  171 (379)
T KOG4226|consen  108 TPAVVKFNYVAEREDELSLTKGTRVTVMEK-SSDGWWRGSYNGQVGWFPSNYVTEEVDS---------------AAGDSP  171 (379)
T ss_pred             CceEEEEeeccccccccccccCcEEEEEEe-ccCcceecccCCeeccccccceehhccc---------------cccCCc
Confidence            358899999999999999999999999998 6679999999999999999999743321               001223


Q ss_pred             cEEEeecC----CCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccccccccccCCCchhhh
Q psy10189         81 AFLIRVSE----SSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL  156 (376)
Q Consensus        81 ~flvR~s~----~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~~~~~  156 (376)
                      +|+-+...    +.++.++|                                                          ..
T Consensus       172 s~~~~~~~A~a~n~~~s~vl----------------------------------------------------------~v  193 (379)
T KOG4226|consen  172 SFLSLRKAASASNGQGSRVL----------------------------------------------------------HV  193 (379)
T ss_pred             cceecchhhcccCCCCceEE----------------------------------------------------------EE
Confidence            33322110    00010110                                                          24


Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEEec--CCCcceeeee-CCeeeeeecccccccccCcchhhhc----cCCCCCCccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEI-GARKGLFPATYILNMEDDMNWYRAE----LDGKEGLIPS  229 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~~~~~~----~~~~~g~~p~  229 (376)
                      +.|||.|.+..+.||+|.+|+.+.|+++  .+++||.++. +|++|+||.|||..+..++.--.+.    .....|.-|+
T Consensus       194 VvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~ts~~~~~s~~pq~sgn~p~  273 (379)
T KOG4226|consen  194 VVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPSTSKALHPSHAPQISGNGPS  273 (379)
T ss_pred             EEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccccccCCccccccccCCCCC
Confidence            6799999999999999999999999987  5778999995 8999999999999876543221111    1123444455


Q ss_pred             cccccccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHH
Q psy10189        230 NYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNE  308 (376)
Q Consensus       230 ~~~~~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~  308 (376)
                      ....+...|||+|.|+|.+||..|. ...+|.||||+|++++|+|++|++..++-+||++.. .++-|.|+.+.|-++.+
T Consensus       274 ~sg~~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq~-~d~~ycIGqRkF~tmd~  352 (379)
T KOG4226|consen  274 SSGRFAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQL-VDNVYCIGQRKFHTMDE  352 (379)
T ss_pred             ccccccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEEE-ecceEEeccceeccHHH
Confidence            4445788999999999999999996 467899999999999999999999999999999965 56889999999999999


Q ss_pred             HHHHHhhCCcCCcc---eeeeCCCCC
Q psy10189        309 LVEYHRTASVSRSQ---DVKLRDMVP  331 (376)
Q Consensus       309 lv~~y~~~~~~~~~---~~~L~~p~~  331 (376)
                      ||+||++.++..+.   .+-|..++|
T Consensus       353 Lv~HY~kaPIfts~qgEKLyLvr~Lp  378 (379)
T KOG4226|consen  353 LVEHYKKAPIFTSEQGEKLYLVRALP  378 (379)
T ss_pred             HHHhhhcCCceecCCCceEEEeccCC
Confidence            99999999887653   333444443

>KOG1264|consensus

Probab=100.00  E-value=4.6e-35  Score=276.26  Aligned_cols=224  Identities=33%  Similarity=0.555  Sum_probs=184.4

Q ss_pred             ccccccccCC-HHHHHHHhcC------CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCC---CcEEEecee-ec
Q psy10189         57 NHDWYYGRIT-RADAERLLSN------KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS---GKFFLWVVK-FN  125 (376)
Q Consensus        57 ~~~w~~g~is-r~~ae~~l~~------~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~---~~~~~~~~~-f~  125 (376)
                      .+.||||++- |.+|+.+|..      .++|+||||+|.+-.|+|+||+..+++|+|++|.....   -+|++.+.. |+
T Consensus       533 ~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN~vfd  612 (1267)
T KOG1264|consen  533 GEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDNLVFD  612 (1267)
T ss_pred             chhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecchhHH
Confidence            4679999998 9999999976      56999999999999999999999999999999986433   367777665 99


Q ss_pred             chhhhHhhhhcccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccc
Q psy10189        126 SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY  205 (376)
Q Consensus       126 sl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~  205 (376)
                      ||-+||.||+...+.-.                           |..+      .+.                       
T Consensus       613 slY~LI~~Y~~~~Lr~a---------------------------eF~m------~Lt-----------------------  636 (1267)
T KOG1264|consen  613 SLYALIQHYRETHLRCA---------------------------EFEM------RLT-----------------------  636 (1267)
T ss_pred             HHHHHHHHHHhcccccc---------------------------ceEE------Eec-----------------------
Confidence            99999999998764310                           1111      111                       


Q ss_pred             ccccccCcchhhhccCCCCCCccccccccccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeE
Q psy10189        206 ILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQ  284 (376)
Q Consensus       206 v~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~  284 (376)
                       .|++.+                   .+++++||||.+.+|++||.+|.. ..||+|||| +...++.|+||++.+++|+
T Consensus       637 -ePvPqp-------------------~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR-~~~~~nsy~iSfr~~gkik  695 (1267)
T KOG1264|consen  637 -EPVPQP-------------------NPHESKPWYHASLTREQAEDMLMRVPRDGAFLIR-KREGSNSYAISFRARGKIK  695 (1267)
T ss_pred             -CCCCCC-------------------CcccCCccccccccHHHHHHHHhhCccCcceEEE-eccCCceEEEEEEEcCcEe
Confidence             111111                   127889999999999999999986 567999999 4467788999999999999


Q ss_pred             EEEEEEcCCCcEEEeccccCCHHHHHHHHhhCCcCCcceeeeCCCCCcc-------------------------------
Q psy10189        285 HFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE-------------------------------  333 (376)
Q Consensus       285 h~~I~~~~~~~~~~~~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~-------------------------------  333 (376)
                      ||+|.++ +..|.++...|.||.+||+||.++++.+  .++|++||.+.                               
T Consensus       696 HcRi~rd-Gr~fvl~t~~FesLv~lv~yY~k~~lyR--~mkLr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~n~~~  772 (1267)
T KOG1264|consen  696 HCRINRD-GRHFVLGTSAFESLVELVSYYEKHPLYR--KMKLRYPVNEELLERYNTERDINALYDVSRMPGDYMEINPSM  772 (1267)
T ss_pred             EEEEccC-ceEEEeccHHHHHHHHHHHHHhcChhhh--cccccCcCCHHHHHHhhhhcccccccccccCCCCccccCccc
Confidence            9999864 3467777888999999999999999998  88888887532                               


Q ss_pred             --ceEEEeccCCCCCCCCccccccceeee
Q psy10189        334 --CLVQALYDFTPQEPGELEFRRDLKIKR  360 (376)
Q Consensus       334 --~~~~~~~~~~~~~~~~l~~~~~~~~~~  360 (376)
                        +.++|||+|.+.+++||+|+++.||.-
T Consensus       773 ~~vt~kAL~~Yka~r~DELSFpk~aiItn  801 (1267)
T KOG1264|consen  773 PQVTVKALYDYKAKRSDELSFPKGAIITN  801 (1267)
T ss_pred             cchhhhhhhccccCCcccccccccceeEe
Confidence              668899999999999999999999976

>KOG3601|consensus

Probab=100.00  E-value=8.7e-35  Score=235.29  Aligned_cols=210  Identities=62%  Similarity=0.995  Sum_probs=196.9

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCCc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEG   80 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G   80 (376)
                      |+++|+++|.+...+||+|.+||.|.+++..++-+|..+..+|.+|++|.||+++...+||++.++|..|+.++....+|
T Consensus         1 Mea~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G   80 (222)
T KOG3601|consen    1 MEAVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDG   80 (222)
T ss_pred             CchhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcc
Confidence            78999999999999999999999999999867778999999999999999999999999999999999999999999999


Q ss_pred             cEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccccccccccCCC---------
Q psy10189         81 AFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMV---------  151 (376)
Q Consensus        81 ~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~---------  151 (376)
                      .|++|.+.++++.|++|++....|+|+++.+...++|+.+...|+++.++++|++++...+.....++...         
T Consensus        81 ~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~  160 (222)
T KOG3601|consen   81 DFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPA  160 (222)
T ss_pred             hhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999998887766555433         


Q ss_pred             chhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccc
Q psy10189        152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       152 ~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      +......++|+|+++.+.+|.+++|+.+.|++..+..||.|+..|+.|+||++|+.+.+
T Consensus       161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~d  219 (222)
T KOG3601|consen  161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPSD  219 (222)
T ss_pred             ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccccc
Confidence            34567889999999999999999999999999999999999999999999999998864

>KOG4278|consensus

Probab=100.00  E-value=7.6e-33  Score=257.08  Aligned_cols=193  Identities=28%  Similarity=0.513  Sum_probs=173.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeeeCCeeeeeecccccccccCcchhhhccCCCCCCccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE  233 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~  233 (376)
                      ....|||||.+..+..|++.+|+.+.|+... ++.|-.++..+..||||+||+.|+.+                      
T Consensus        91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNS----------------------  148 (1157)
T KOG4278|consen   91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNS----------------------  148 (1157)
T ss_pred             ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccc----------------------
Confidence            3688999999999999999999999999875 45688887643449999999999877                      


Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++...||||.++|..||.+|....+|+||||+|++.+|.|++|+++.|+|+||+|..+.+|+.|+. +..|.+|.|||.|
T Consensus       149 LeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHH  228 (1157)
T KOG4278|consen  149 LEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHH  228 (1157)
T ss_pred             hhhcccccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHhh
Confidence            788999999999999999999999999999999999999999999999999999999999998887 7999999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCccceEEEeccCCCCCCCCccccccceeee-ecCCCCCCcccee
Q psy10189        313 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKR-RKSAKTKDETTVR  373 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~  373 (376)
                      |.....++  -++|-+|-|+..-.. +|...|.- ++|++.+.+|+++ |||-||.|||-.|
T Consensus       229 HStvADGL--ittLhYPApK~nKpt-vygvSPn~-DkWEmeRtdItMkhKLGGGQYGeVYeG  286 (1157)
T KOG4278|consen  229 HSTVADGL--ITTLHYPAPKKNKPT-VYGVSPNA-DKWEMERTDITMKHKLGGGQYGEVYEG  286 (1157)
T ss_pred             ccccccce--eEeeeccCccCCCCc-eeeecCCc-chhhccchheeeeeccCCCcccceeee
Confidence            99998887  888999998764443 77777766 8999999999999 9999999999654

>KOG0790|consensus

Probab=99.95  E-value=6.6e-28  Score=214.94  Aligned_cols=200  Identities=36%  Similarity=0.563  Sum_probs=166.5

Q ss_pred             ccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhh
Q psy10189         57 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHR  135 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~  135 (376)
                      +..|||..++..+|+.+|.. ..+|+||.|.|.+++++|++++..++.+.|++|...++..-...+.+|.++.+|++||+
T Consensus         3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~~~l~~gekfat~~ELvqyym   82 (600)
T KOG0790|consen    3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDFYDLYGGEKFATLAELVQYYM   82 (600)
T ss_pred             chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCccccccCCccccchHHHHHHHH
Confidence            45799999999999999998 89999999999999999999999999999999997766644455678999999999998


Q ss_pred             cccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccCcch
Q psy10189        136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW  215 (376)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  215 (376)
                      ..+                              .+|.-+.|++|.+-..                  .            
T Consensus        83 e~~------------------------------~~lkekng~~ielK~p------------------l------------  102 (600)
T KOG0790|consen   83 EHH------------------------------GQLKEKNGDVIELKYP------------------L------------  102 (600)
T ss_pred             hhh------------------------------HHHHhcCCCEEEecCC------------------C------------
Confidence            754                              2344455666655321                  1            


Q ss_pred             hhhccCCCCCCccccccccccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeCC---------eeEE
Q psy10189        216 YRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSD---------GVQH  285 (376)
Q Consensus       216 ~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~~---------~v~h  285 (376)
                                    +-.++.+..||||+++..+||.+|. ..++|+||||+|.+.+|+|+|||+.++         +|.|
T Consensus       103 --------------~cAdptserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtH  168 (600)
T KOG0790|consen  103 --------------NCADPTSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTH  168 (600)
T ss_pred             --------------ccCCchhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEE
Confidence                          1112456679999999999999995 568999999999999999999999865         8999


Q ss_pred             EEEEEcCCCcEEEe-ccccCCHHHHHHHHhhCCcCCcc--eeeeCCCCC
Q psy10189        286 FKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQ--DVKLRDMVP  331 (376)
Q Consensus       286 ~~I~~~~~~~~~~~-~~~f~sl~~lv~~y~~~~~~~~~--~~~L~~p~~  331 (376)
                      ..|... ++.|-++ +..|+||.+||+||++|++-...  -+.|++|+-
T Consensus       169 vmI~~q-~~kydVGgge~F~sltdLidhykknpmvEt~gtvv~LrqP~n  216 (600)
T KOG0790|consen  169 VMIRCQ-EGKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVVYLRQPLN  216 (600)
T ss_pred             EEEEec-ccccccCCccccchHHHHHHHhccCchhhhcceeEEeecccc
Confidence            999865 4889998 58999999999999999987653  456888874

>KOG2996|consensus

Probab=99.95  E-value=2.7e-28  Score=223.40  Aligned_cols=194  Identities=34%  Similarity=0.639  Sum_probs=164.5

Q ss_pred             CccccCCCEEEEEeccCCccceeecc--CCccceecccccccc---------------ccccccccCCHHHHHHHhcCCC
Q psy10189         16 ELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMK---------------NHDWYYGRITRADAERLLSNKH   78 (376)
Q Consensus        16 eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~---------------~~~w~~g~isr~~ae~~l~~~~   78 (376)
                      -|.+.+||+++++..+.+..||+++.  .+..||+|++-|++.               ..+||.|.|-|.+|+..|.+.+
T Consensus       626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~~~WyaG~MERaqaes~Lk~~~  705 (865)
T KOG2996|consen  626 RLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSEFPWYAGEMERAQAESTLKNRP  705 (865)
T ss_pred             ceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhhhhhhcchHhhhhhhhHhhcCC
Confidence            57899999999998777788999994  457899999988742               3569999999999999999999


Q ss_pred             CccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEecee-ecchhhhHhhhhccccccc---ccccccCCC--c
Q psy10189         79 EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVK-FNSLNELVEYHRTASVSRS---QDVKLRDMV--P  152 (376)
Q Consensus        79 ~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~-f~sl~~li~~~~~~~~~~~---~~~~~~~~~--~  152 (376)
                      +|+||||.+....+.|.+|+++++.|+|++|... +|.+.+.... |+|+.+||+||+.+++...   ..+.+..|-  |
T Consensus       706 ngT~LVR~r~kea~e~AISikynnevKHikI~~~-dg~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~LDTtLk~Pyke~  784 (865)
T KOG2996|consen  706 NGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETN-DGKVHITEDKKFNSLVELVEYYQSHSLKEIFKALDTTLKFPYKEP  784 (865)
T ss_pred             CceEEEEecccchhheeEEEEeccccceEEEEec-CCeEEechhhhhhhHHHHHHHHHhccHHHHHHHhhhhhcCCCcCh
Confidence            9999999999999999999999999999999977 8888888775 9999999999998876542   122222221  0


Q ss_pred             h-------------------hhhhhhcccCCCCCCCceeccCCCEEEEEec--CCCcceeeeeCCeeeeeecccccccc
Q psy10189        153 E-------------------ECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       153 ~-------------------~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      .                   -..++|-|||.+.+..+|++++||++.++.+  .+.|||.|..+|++||||++||++-+
T Consensus       785 e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  785 EHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             hhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence            0                   1356788999999999999999999999987  45799999999999999999998753

>KOG0197|consensus

Probab=99.95  E-value=6.5e-28  Score=222.46  Aligned_cols=196  Identities=32%  Similarity=0.572  Sum_probs=156.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCE-EEEEecCCCcceeeee--CCeeeeeecccccccccCcchhhhccCCCCCCccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDV-ITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNY  231 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~-i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~  231 (376)
                      ..+.|+|+|.+..+.+|+|.+|+. ..+++..+..||.++.  .+..|++|+|||....              |.-+.  
T Consensus        12 ~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~--------------~~~~~--   75 (468)
T KOG0197|consen   12 TIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNR--------------GSPAF--   75 (468)
T ss_pred             ceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccc--------------cCCCc--
Confidence            578999999999999999999999 7888888899999874  6889999999998752              11111  


Q ss_pred             cccccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCC------eeEEEEEEEcCCCcEE--Ee-c
Q psy10189        232 IEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSD------GVQHFKVLRDSSGKFF--LW-V  300 (376)
Q Consensus       232 ~~~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~------~v~h~~I~~~~~~~~~--~~-~  300 (376)
                      ..+..++||++.|+|.+|++.|..  ++.|+||||+|++.+++|+|||+...      .|+||+|.+.++|.++  +. .
T Consensus        76 ~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~  155 (468)
T KOG0197|consen   76 IKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDER  155 (468)
T ss_pred             cccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHH
Confidence            126788999999999999976653  46699999999999999999999865      8999999999888777  77 5


Q ss_pred             cccCCHHHHHHHHhhCCcCCcceeeeCCCCCcc---ceEEE-e-ccCCCCCCCCccccccceeeeecCCCCCCccceec
Q psy10189        301 VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE---CLVQA-L-YDFTPQEPGELEFRRDLKIKRRKSAKTKDETTVRE  374 (376)
Q Consensus       301 ~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~---~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  374 (376)
                      ..|+++.+||+||++++.+.  +..|+.|....   ....+ + ++-|..++++      +...++||+|+||||-++.
T Consensus       156 ~~F~~l~~lv~~~~~~~~gl--~~~l~~p~~~~~~~~p~~~~~~~d~wei~r~~------l~l~~~LG~G~FG~V~~g~  226 (468)
T KOG0197|consen  156 ELFSSLQQLVNYYSKNADGL--CTRLRDPCSKQGHTKPQTPDLARDPWEIPREE------LKLIRELGSGQFGEVWLGK  226 (468)
T ss_pred             HhhhhHHHHHhhhhccCcch--hhcccCchhccCCCCCCCCccccCCeeecHHH------HHHHHHhcCCccceEEEEE
Confidence            89999999999999999988  66777776432   11111 1 3333333333      4556789999999997763

>KOG2996|consensus

Probab=99.94  E-value=4.1e-27  Score=215.74  Aligned_cols=184  Identities=29%  Similarity=0.534  Sum_probs=156.3

Q ss_pred             CceeccCCCEEEEEec-CCCcceeeee--CCeeeeeecccccccccCcchhhhccCCCCCCccccccccccccccccccC
Q psy10189        169 GELEFRRGDVITVTDR-SDQHWWHGEI--GARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRIT  245 (376)
Q Consensus       169 ~eL~~~~g~~i~v~~~-~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~  245 (376)
                      .-|.+..||++.++.. ....||.|+.  .+..|+||++-|.|.+..+.        +..++|.+|   ..++||.|.|-
T Consensus       625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr--------~~~~~~~d~---s~~~WyaG~ME  693 (865)
T KOG2996|consen  625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPR--------QQDYVPTDY---SEFPWYAGEME  693 (865)
T ss_pred             CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCC--------CCCCCccch---hhhhhhcchHh
Confidence            4588999999988765 4566999986  57899999999999876432        344555554   67899999999


Q ss_pred             hHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHHhhCCcCCc---
Q psy10189        246 RADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRS---  321 (376)
Q Consensus       246 r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y~~~~~~~~---  321 (376)
                      |.+||..|.+.++|+||||.+....+.|++|+++++.|+|++|... +|++.+. ...|.|+.|||+||++|++..+   
T Consensus       694 Raqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~-dg~~~i~E~k~F~sl~ELVeyYq~~sLke~Fk~  772 (865)
T KOG2996|consen  694 RAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETN-DGKVHITEDKKFNSLVELVEYYQSHSLKEIFKA  772 (865)
T ss_pred             hhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEec-CCeEEechhhhhhhHHHHHHHHHhccHHHHHHH
Confidence            9999999999999999999998788899999999999999999875 7889998 5999999999999999998865   


Q ss_pred             ceeeeCCCCCcc---------------------ceEEEeccCCCCCCCCccccccceeee--ecCC
Q psy10189        322 QDVKLRDMVPEE---------------------CLVQALYDFTPQEPGELEFRRDLKIKR--RKSA  364 (376)
Q Consensus       322 ~~~~L~~p~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~  364 (376)
                      ++++|+.|+..+                     ..+.|.|||.+++..||+|++|++++-  ++|+
T Consensus       773 LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~  838 (865)
T KOG2996|consen  773 LDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGE  838 (865)
T ss_pred             hhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhccc
Confidence            688999998622                     235678999999999999999988765  8877

>KOG4226|consensus

Probab=99.94  E-value=1.7e-26  Score=193.22  Aligned_cols=139  Identities=42%  Similarity=0.722  Sum_probs=125.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEec-cCCccceeec-cCCccceecccccccc-----------------------
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRAE-LDGKEGLIPSNYIEMK-----------------------   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~-~~~~~W~~~~-~~g~~G~vP~nyve~~-----------------------   56 (376)
                      .++|||+|.+.+++||+|.+||.++|+++ ..|+.||.++ .+|+.|+||.|||...                       
T Consensus       193 vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~ts~~~~~s~~pq~sgn~p  272 (379)
T KOG4226|consen  193 VVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPSTSKALHPSHAPQISGNGP  272 (379)
T ss_pred             EEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccccccCCccccccccCCCC
Confidence            47999999999999999999999999986 5667899999 7899999999998621                       


Q ss_pred             -------ccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchh
Q psy10189         57 -------NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLN  128 (376)
Q Consensus        57 -------~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~  128 (376)
                             ..+||+|.|+|.+|+.+|.. +.+|.||||+|++++++|++|++..++.+||++. .-++.|.+...+|.++.
T Consensus       273 ~~sg~~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~grNKHFkVq-~~d~~ycIGqRkF~tmd  351 (379)
T KOG4226|consen  273 SSSGRFAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKASGRNKHFKVQ-LVDNVYCIGQRKFHTMD  351 (379)
T ss_pred             CccccccCCcceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeeccCCCcceEEE-EecceEEeccceeccHH
Confidence                   24699999999999999955 8999999999999999999999999999999996 46778999999999999


Q ss_pred             hhHhhhhcccccc
Q psy10189        129 ELVEYHRTASVSR  141 (376)
Q Consensus       129 ~li~~~~~~~~~~  141 (376)
                      +||+||+..++-.
T Consensus       352 ~Lv~HY~kaPIft  364 (379)
T KOG4226|consen  352 ELVEHYKKAPIFT  364 (379)
T ss_pred             HHHHhhhcCCcee
Confidence            9999999988643

>KOG4637|consensus

Probab=99.94  E-value=1.2e-26  Score=202.01  Aligned_cols=96  Identities=31%  Similarity=0.401  Sum_probs=87.2

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-cccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~lv~~  312 (376)
                      .....|+.+.+.|..|+.+|+++++|+||||.| +..|.|+|||..++.|+|+.|.++..|+.|... ..+.||.+||.|
T Consensus       329 ~~e~~w~~~~a~r~kAe~llrg~~dGtFLIR~s-s~~g~yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~h  407 (464)
T KOG4637|consen  329 NDEKTWRVRDANRDKAEELLRGKPDGTFLIRES-SKGGCYALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLH  407 (464)
T ss_pred             hhhhHhHHhhhhHHHHHHHhcCCCCCeEEEeec-cCCCceEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHH
Confidence            455689999999999999999999999999997 688999999999999999999999999888874 789999999999


Q ss_pred             HhhCCcCCc---ceeeeCCCC
Q psy10189        313 HRTASVSRS---QDVKLRDMV  330 (376)
Q Consensus       313 y~~~~~~~~---~~~~L~~p~  330 (376)
                      |+++++..+   ..++|++|+
T Consensus       408 Y~h~SLe~HnDal~ttLr~Pv  428 (464)
T KOG4637|consen  408 YQHTSLEQHNDALTTTLRYPV  428 (464)
T ss_pred             HhhhhHHhhccccccccccce
Confidence            999987754   578899987

>KOG1029|consensus

Probab=99.93  E-value=7.6e-26  Score=213.10  Aligned_cols=168  Identities=24%  Similarity=0.437  Sum_probs=107.7

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEec-cCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCC
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE   79 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~-~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~   79 (376)
                      ++|.|||.|++++.+||+|..||+|.|.+. ..++||..|..+|+.||||.|||+.....-..+.++.-.+   |..   
T Consensus       694 vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~p~~v~Pv~~---l~~---  767 (1118)
T KOG1029|consen  694 VKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVETPGGVPPVQN---LPP---  767 (1118)
T ss_pred             EEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCCCCCCCchhc---CCC---
Confidence            379999999999999999999999999975 6778999999999999999999996543211111111100   000   


Q ss_pred             ccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccc-cccccccCC---Cchhh
Q psy10189         80 GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSR-SQDVKLRDM---VPEEC  155 (376)
Q Consensus        80 G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~-~~~~~~~~~---~~~~~  155 (376)
                      ..-+ ..|.+..+.++-  .++..                    ++.+          ++.. .....+..|   .-...
T Consensus       768 ~~~p-sas~nq~a~~ad--~~~~~--------------------~n~~----------~~t~~aA~p~~tapg~~eve~l  814 (1118)
T KOG1029|consen  768 TMTP-SASVNQIAVVAD--TKNES--------------------ANAM----------GLTEGAAPPALTAPGQGEVEIL  814 (1118)
T ss_pred             CCCc-ccccccceeecc--cccch--------------------hhcc----------CCCCCCCCccccCCCchhhhhh
Confidence            0000 000000000000  00000                    0000          0000 000111111   11124


Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      +|+|+|.|.+..+.+|+|.+||+|+|+++. +.||.|...|+.||||.+||..
T Consensus       815 q~iA~y~wrakke~dLsFskgd~I~Vlekq-emwW~G~v~g~~GwFPksYVk~  866 (1118)
T KOG1029|consen  815 QAIALYPWRAKKENDLSFSKGDTITVLEKQ-EMWWFGEVAGEIGWFPKSYVKE  866 (1118)
T ss_pred             hHHhhccccccccccccccCCCeeeeehhc-cceecccccCccCcCcHHhhhh
Confidence            799999999999999999999999999876 6799999999999999999984

>KOG3601|consensus

Probab=99.92  E-value=4.8e-26  Score=184.68  Aligned_cols=179  Identities=58%  Similarity=0.921  Sum_probs=158.9

Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccCcchhhhccCCCCCCcccccccccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN  236 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~  236 (376)
                      +.++++|.+...+||+|.+|+.+.+++..+.                         .+|.+..+.|.+|++|.++..+..
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~-------------------------~nw~~ael~g~~g~~P~Nai~~~~   57 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDD-------------------------INWYKAELDGPEGFIPKNAIRMKP   57 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHh-------------------------hhhhhHhhcCccccCccccccccc
Confidence            5688999999999999999999988876532                         345555666677777777777788


Q ss_pred             ccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHHhhC
Q psy10189        237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTA  316 (376)
Q Consensus       237 ~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y~~~  316 (376)
                      .+||++.++|..|+++|.++.+|+||+|.+++.+|.|++|+++...|.|+++.+...++|++....|+|+.+|++||..+
T Consensus        58 ~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~  137 (222)
T KOG3601|consen   58 HEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTA  137 (222)
T ss_pred             ccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcceeeeCCCC---------CccceEEEeccCCCCCCCCccccccceeee
Q psy10189        317 SVSRSQDVKLRDMV---------PEECLVQALYDFTPQEPGELEFRRDLKIKR  360 (376)
Q Consensus       317 ~~~~~~~~~L~~p~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  360 (376)
                      +..++..+.|+...         +..++++|+|+|.+..+.+|.|++|+.|..
T Consensus       138 s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v  190 (222)
T KOG3601|consen  138 SQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQV  190 (222)
T ss_pred             ccccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCccee
Confidence            99998888887644         345889999999999999999999988764

>KOG4278|consensus

Probab=99.91  E-value=2.8e-24  Score=200.41  Aligned_cols=139  Identities=36%  Similarity=0.667  Sum_probs=127.7

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccc----ccccccccccCCHHHHHHHhcCCC
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE----MKNHDWYYGRITRADAERLLSNKH   78 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve----~~~~~w~~g~isr~~ae~~l~~~~   78 (376)
                      +||||||.+.++..||+.+||.++|+..+....|.+++....+||||+||+.    +....||||.++|..||.+|....
T Consensus        93 FVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNSLeKhsWYHGpvSRsaaEy~LsSgI  172 (1157)
T KOG4278|consen   93 FVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRSAAEYILSSGI  172 (1157)
T ss_pred             eEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccchhhcccccCccccchhhhhhhcCc
Confidence            6999999999999999999999999988666679999965555999999997    456889999999999999999999


Q ss_pred             CccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEecee-ecchhhhHhhhhcccccc
Q psy10189         79 EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVK-FNSLNELVEYHRTASVSR  141 (376)
Q Consensus        79 ~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~-f~sl~~li~~~~~~~~~~  141 (376)
                      .|+||||+|++++|.|++|+++.++|.||+|....+|+.++.... |.+|.+||+||.....+.
T Consensus       173 nGSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGL  236 (1157)
T KOG4278|consen  173 NGSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGL  236 (1157)
T ss_pred             ccceEEeeccCCCcceeEEEEecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccccccce
Confidence            999999999999999999999999999999999999998888775 999999999999877654

>KOG4792|consensus

Probab=99.89  E-value=6.2e-23  Score=167.49  Aligned_cols=157  Identities=26%  Similarity=0.614  Sum_probs=129.2

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEc-C------CCcEEEeceeecch
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD-S------SGKFFLWVVKFNSL  127 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~-~------~~~~~~~~~~f~sl  127 (376)
                      .....||+|.|+|++|.++|.+...|.||+|+|.+.+|+|+||+..+++|.||.|... +      ...+-+....|++|
T Consensus         8 ~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgdQ~Fd~l   87 (293)
T KOG4792|consen    8 SERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGDQEFDSL   87 (293)
T ss_pred             hhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeeccccccch
Confidence            3457899999999999999999889999999999999999999999999999999862 1      12577777889999


Q ss_pred             hhhHhhhhcccccccccccccCCC----------chhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CC
Q psy10189        128 NELVEYHRTASVSRSQDVKLRDMV----------PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GA  196 (376)
Q Consensus       128 ~~li~~~~~~~~~~~~~~~~~~~~----------~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~  196 (376)
                      ..|++||+-+-+....-.....-.          -....+.++|+|.+.++++|.|++|+++.|+++..+.||.++. .|
T Consensus        88 PaLL~fykihyLdtttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~G  167 (293)
T KOG4792|consen   88 PALLEFYKIHYLDTTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEG  167 (293)
T ss_pred             HHHHhheeEeeeccccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCC
Confidence            999999986654322111100000          0124677899999999999999999999999999999999996 79


Q ss_pred             eeeeeeccccccccc
Q psy10189        197 RKGLFPATYILNMED  211 (376)
Q Consensus       197 ~~G~~P~~~v~~~~~  211 (376)
                      +.|.+|.+||+....
T Consensus       168 k~GmIPvpYVe~~~~  182 (293)
T KOG4792|consen  168 KRGMIPVPYVEKYRP  182 (293)
T ss_pred             cccceechHHHhhhh
Confidence            999999999987643

>KOG4225|consensus

Probab=99.86  E-value=4.9e-22  Score=177.32  Aligned_cols=131  Identities=34%  Similarity=0.664  Sum_probs=105.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCCcc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGA   81 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~   81 (376)
                      .+.|+|+|++++..||+|.+||+|.|+.+ .|.+|+.|..+|+.|+||+|||++....        +.|           
T Consensus       232 ~aralf~F~~qt~kEL~~~kGDIVyI~rk-vD~nWyeGEhhGr~GifP~sYvE~~~~~--------e~~-----------  291 (489)
T KOG4225|consen  232 AARALFDFEAQTPKELPFNKGDIVYILRK-VDQNWYEGEHHGRVGIFPASYVEILTPR--------EKA-----------  291 (489)
T ss_pred             hhhheeccccCCccccccCCCCEEEEEee-ccCceeeeeecceecceechheeecCcc--------ccc-----------
Confidence            36899999999999999999999999987 6679999999999999999999965431        000           


Q ss_pred             EEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccccccccccCCCchhhhhhhcc
Q psy10189         82 FLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY  161 (376)
Q Consensus        82 flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  161 (376)
                              .+.                                                   . ..+.-.......+|.|
T Consensus       292 --------qP~---------------------------------------------------~-~~P~q~~~~g~a~A~y  311 (489)
T KOG4225|consen  292 --------QPA---------------------------------------------------R-PPPQQVLEQGEAIAKY  311 (489)
T ss_pred             --------CcC---------------------------------------------------C-CCcccccccccccccC
Confidence                    000                                                   0 0000000012478999


Q ss_pred             cCCCCCCCceeccCCCEEEEEecCCCcceeeeeC--CeeeeeecccccccccC
Q psy10189        162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYILNMEDD  212 (376)
Q Consensus       162 ~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~~~  212 (376)
                      +|.+..+.||++++|+.+.++.+.+.+|..|.+.  ++.|+||.+||+.+..+
T Consensus       312 ~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~  364 (489)
T KOG4225|consen  312 NFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSP  364 (489)
T ss_pred             CCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhcc
Confidence            9999999999999999999999999999999974  89999999999998654

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.85  E-value=8.1e-21  Score=142.61  Aligned_cols=93  Identities=44%  Similarity=0.702  Sum_probs=82.5

Q ss_pred             cccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHHhhC
Q psy10189        238 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTA  316 (376)
Q Consensus       238 ~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y~~~  316 (376)
                      +||||.|+|++|+++|.+.++|+||||.|.+.++.|+||++.++.++||+|....++.++.. ...|+||.|||+||+.+
T Consensus         1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~   80 (94)
T cd00173           1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN   80 (94)
T ss_pred             CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence            69999999999999999889999999999878899999999999999999999887766666 79999999999999999


Q ss_pred             CcCCcceeeeCCCC
Q psy10189        317 SVSRSQDVKLRDMV  330 (376)
Q Consensus       317 ~~~~~~~~~L~~p~  330 (376)
                      ++.....+.|+.|+
T Consensus        81 ~~~~~~~~~L~~p~   94 (94)
T cd00173          81 PLSDGLGVKLRYPV   94 (94)
T ss_pred             ccCCCcccEeCCcC
Confidence            86333466777763

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>KOG4792|consensus

Probab=99.85  E-value=2.8e-21  Score=157.86  Aligned_cols=123  Identities=28%  Similarity=0.551  Sum_probs=105.0

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcC-C------CcEEEeccccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS-S------GKFFLWVVKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~-~------~~~~~~~~~f~sl  306 (376)
                      .+...||+|.|+|+||..+|.+...|.||||+|.+.+|+|+|||+.+.+|.||.|.... +      ..+.|+++.|++|
T Consensus         8 ~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIgdQ~Fd~l   87 (293)
T KOG4792|consen    8 SERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIGDQEFDSL   87 (293)
T ss_pred             hhccceecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeeeccccccch
Confidence            46678999999999999999998899999999998899999999999999999998621 1      1588899999999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCcc-------------ceEEEeccCCCCCCCCccccccceee
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPEE-------------CLVQALYDFTPQEPGELEFRRDLKIK  359 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~  359 (376)
                      ++|++||+-+-|..   ++|..|+++.             ..++|+|+|.+.+.++|.|+||+++.
T Consensus        88 PaLL~fykihyLdt---ttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~  150 (293)
T KOG4792|consen   88 PALLEFYKIHYLDT---TTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILR  150 (293)
T ss_pred             HHHHhheeEeeecc---ccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEE
Confidence            99999998876543   4566655432             45788999999999999999997754

>smart00252 SH2 Src homology 2 domains

Probab=99.85  E-value=7e-21  Score=139.60  Aligned_cols=82  Identities=48%  Similarity=0.796  Sum_probs=76.2

Q ss_pred             ccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-cccCCHHHHHHHHhh
Q psy10189        237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRT  315 (376)
Q Consensus       237 ~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~lv~~y~~  315 (376)
                      ++||||.|+|++|+++|.+.++|+||||.|.+.++.|+||++.++.++||+|...++|.|++.+ ..|+||.+||+||+.
T Consensus         1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~   80 (84)
T smart00252        1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQK   80 (84)
T ss_pred             CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhh
Confidence            4899999999999999998889999999998778999999999999999999988778898886 999999999999998


Q ss_pred             CCc
Q psy10189        316 ASV  318 (376)
Q Consensus       316 ~~~  318 (376)
                      +++
T Consensus        81 ~~~   83 (84)
T smart00252       81 NSL   83 (84)
T ss_pred             CCC
Confidence            765

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>KOG4348|consensus

Probab=99.84  E-value=3.8e-22  Score=177.41  Aligned_cols=154  Identities=23%  Similarity=0.578  Sum_probs=112.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCCcc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGA   81 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~   81 (376)
                      .|++-|||+|+.++||+++.|++|.-+.+ .+.|||.|..||++|+||.|||.......-                 +..
T Consensus         3 d~ive~dy~a~hddelti~vgeii~nvkk-~e~gw~egelngrrg~fpdnfV~eik~e~k-----------------~d~   64 (627)
T KOG4348|consen    3 DYIVEYDYDAVHDDELTIRVGEIIRNVKK-LEEGWLEGELNGRRGQFPDNFVVEIKVEFK-----------------DDD   64 (627)
T ss_pred             ceeeecccccccCceeeEeHHHHHHhhhh-hccceeeceeccccccCCchhhhhhhhhcc-----------------ccc
Confidence            78999999999999999999999999887 577999999999999999999874332100                 000


Q ss_pred             EEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhccccccccccccc--CCCchhhhhhh
Q psy10189         82 FLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR--DMVPEECLVQA  159 (376)
Q Consensus        82 flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~--~~~~~~~~~~a  159 (376)
                      ...+.+..                                    +   |++....+++...+...-+  .+.++..+|.+
T Consensus        65 l~nk~~r~------------------------------------~---l~q~~s~n~l~~~q~v~rtn~~~q~~~r~c~v  105 (627)
T KOG4348|consen   65 LVNKLSRD------------------------------------S---LVQMTSRNPLTVHQQVERTNPPPQPQARICVV  105 (627)
T ss_pred             cccccccc------------------------------------c---hhhcccCCCccccCcccccCCCCCccceeEEE
Confidence            00111100                                    0   0000011111111111111  22344578999


Q ss_pred             cccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        160 LYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       160 l~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      +|.|.++.++||+|..||+|.|++...+|||.|.++|+.|.||+|||...+.+
T Consensus       106 ~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~  158 (627)
T KOG4348|consen  106 TFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTP  158 (627)
T ss_pred             EEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCC
Confidence            99999999999999999999999999999999999999999999999987654

>KOG4348|consensus

Probab=99.84  E-value=1.2e-21  Score=174.34  Aligned_cols=198  Identities=19%  Similarity=0.383  Sum_probs=120.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHH--HHHHhcCCCC
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRAD--AERLLSNKHE   79 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~--ae~~l~~~~~   79 (376)
                      .|+|+|.|-+++++||.|+.||+|+|+.. .++|||.|.++|+.|+||+|||+....+--...+..++  .+..|.    
T Consensus       102 ~c~v~f~Y~pqndDELelkVGDiIeli~e-VEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stla----  176 (627)
T KOG4348|consen  102 ICVVTFAYSPQNDDELELKVGDIIELISE-VEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLA----  176 (627)
T ss_pred             eEEEEEeecCCCCceeeeeeccHHHhhhH-hhhhhhhceecCcccccchhhceecCCCCcchhhhcCcccchhhhc----
Confidence            59999999999999999999999999986 77799999999999999999998654331111111111  111111    


Q ss_pred             ccEEEeecCCCCCc-eEEEEEeCCe-eEEEEEEEcCCCcEEEecee---ecchhhhHhhhh-----cccccccc---c--
Q psy10189         80 GAFLIRVSESSPGD-FSLSVKCSDG-VQHFKVLRDSSGKFFLWVVK---FNSLNELVEYHR-----TASVSRSQ---D--  144 (376)
Q Consensus        80 G~flvR~s~~~~~~-~~Ls~~~~~~-v~h~~I~~~~~~~~~~~~~~---f~sl~~li~~~~-----~~~~~~~~---~--  144 (376)
                            .+...... ..-|-..++. .+..+|...+.|..|....-   ..+...-.++..     ...++.+.   .  
T Consensus       177 ------gst~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~t  250 (627)
T KOG4348|consen  177 ------GSTARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDIT  250 (627)
T ss_pred             ------CcCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCcccc
Confidence                  11111110 0111111222 23444554555544433210   111000001100     01111000   0  


Q ss_pred             -ccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEec--CCCcceeeeeCCeeeeeecccccccc
Q psy10189        145 -VKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       145 -~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                       .....-......|+++|.|++++++||.+++||++.++.+  .+-|||.|.++|+.|.||-|||..+.
T Consensus       251 ktd~~~~tKtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  251 KTDTAETTKTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             ccccccchhhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence             0001111224689999999999999999999999999876  46789999999999999999998765

>KOG1264|consensus

Probab=99.83  E-value=2.7e-20  Score=177.00  Aligned_cols=150  Identities=33%  Similarity=0.682  Sum_probs=124.7

Q ss_pred             ccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC-cEEEeceeecchhhhHhhh
Q psy10189         57 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG-KFFLWVVKFNSLNELVEYH  134 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~-~~~~~~~~f~sl~~li~~~  134 (376)
                      +.+|||...+|++||.+|.. ..+|+|||| +...+..|++|+..+++++|++|.+  +| .|.+....|.+|.+||+||
T Consensus       647 ~k~W~~as~treqAE~mL~rvp~DGaFLiR-~~~~~nsy~iSfr~~gkikHcRi~r--dGr~fvl~t~~FesLv~lv~yY  723 (1267)
T KOG1264|consen  647 SKPWYHASLTREQAEDMLMRVPRDGAFLIR-KREGSNSYAISFRARGKIKHCRINR--DGRHFVLGTSAFESLVELVSYY  723 (1267)
T ss_pred             CCccccccccHHHHHHHHhhCccCcceEEE-eccCCceEEEEEEEcCcEeEEEEcc--CceEEEeccHHHHHHHHHHHHH
Confidence            46799999999999999998 678999999 7778889999999999999999974  44 4555555599999999999


Q ss_pred             hcccccccccccccCCC-------------------------------c--hhhhhhhcccCCCCCCCceeccCCCEEEE
Q psy10189        135 RTASVSRSQDVKLRDMV-------------------------------P--EECLVQALYDFTPQEPGELEFRRGDVITV  181 (376)
Q Consensus       135 ~~~~~~~~~~~~~~~~~-------------------------------~--~~~~~~al~~~~~~~~~eL~~~~g~~i~v  181 (376)
                      ..+++-+.-  .++.|.                               |  ....+.|||+|.|+.++||+|.+|.+|++
T Consensus       724 ~k~~lyR~m--kLr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~n~~~~~vt~kAL~~Yka~r~DELSFpk~aiItn  801 (1267)
T KOG1264|consen  724 EKHPLYRKM--KLRYPVNEELLERYNTERDINALYDVSRMPGDYMEINPSMPQVTVKALYDYKAKRSDELSFPKGAIITN  801 (1267)
T ss_pred             hcChhhhcc--cccCcCCHHHHHHhhhhcccccccccccCCCCccccCccccchhhhhhhccccCCcccccccccceeEe
Confidence            877644321  111111                               1  13679999999999999999999999999


Q ss_pred             EecCCCcceeeeeCC-eeeeeeccccccccc
Q psy10189        182 TDRSDQHWWHGEIGA-RKGLFPATYILNMED  211 (376)
Q Consensus       182 ~~~~~~~w~~~~~~~-~~G~~P~~~v~~~~~  211 (376)
                      +++..++||.|..+| ..+|||+|||+.+.+
T Consensus       802 v~keeg~wWrGdYGg~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  802 VSKEEGGWWRGDYGGRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             eeccCCceeecccccceeeeccHHHhhhhcc
Confidence            999999999999875 589999999998865

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.82  E-value=3.4e-20  Score=133.51  Aligned_cols=75  Identities=47%  Similarity=0.801  Sum_probs=70.5

Q ss_pred             ccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHH
Q psy10189        239 WYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYH  313 (376)
Q Consensus       239 w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y  313 (376)
                      ||||.|+|++|+++|.. .++|+||||.|.+.++.|+|||+.++.|+||+|..++++.|++. +..|+||.+||+||
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y   77 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY   77 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence            99999999999999998 89999999999888899999999999999999999988867776 58899999999998

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>KOG1029|consensus

Probab=99.82  E-value=1.5e-20  Score=177.65  Aligned_cols=222  Identities=25%  Similarity=0.492  Sum_probs=131.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCCcc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGA   81 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~   81 (376)
                      +|+|+|+|.+..+.+|+|.+||+|.|+++.  +.||.|...|..||||.+||+.....  .+.+...+....+....+++
T Consensus       815 q~iA~y~wrakke~dLsFskgd~I~Vlekq--emwW~G~v~g~~GwFPksYVk~~~~~--t~st~~~~s~es~sae~p~~  890 (1118)
T KOG1029|consen  815 QAIALYPWRAKKENDLSFSKGDTITVLEKQ--EMWWFGEVAGEIGWFPKSYVKEVGAI--TGSTTKIESPESLSAEAPGA  890 (1118)
T ss_pred             hHHhhccccccccccccccCCCeeeeehhc--cceecccccCccCcCcHHhhhhcccc--ccccccccCcccccccCccc
Confidence            589999999999999999999999999963  36999999999999999999832210  11111111111111111111


Q ss_pred             EE----EeecCCCCCceEEEEE-e------CC---eeEEEEEEEcCCCcEEEecee-----ecchhhhHhhhhccccccc
Q psy10189         82 FL----IRVSESSPGDFSLSVK-C------SD---GVQHFKVLRDSSGKFFLWVVK-----FNSLNELVEYHRTASVSRS  142 (376)
Q Consensus        82 fl----vR~s~~~~~~~~Ls~~-~------~~---~v~h~~I~~~~~~~~~~~~~~-----f~sl~~li~~~~~~~~~~~  142 (376)
                      --    ...+...++.-...+- +      ++   ..-|-.+...-+|.+..+...     |++     +||...-....
T Consensus       891 ~~~~a~~taa~v~~qeq~ya~~~~~e~vEq~dlt~~egd~iLvtekdgeww~gt~~~r~gifPa-----n~y~r~~~q~g  965 (1118)
T KOG1029|consen  891 AASDATPTAAPVAPQEQLYAVYPYFEAVEQGDLTFHEGDEILVTEKDGEWWTGTCGDREGIFPA-----NYYVRPKDQEG  965 (1118)
T ss_pred             cccccCcccccccccceeEEEecccccccCCCccccccceEEEeeccCceeccccCCccccccc-----cceeeehhccC
Confidence            00    0011111111111100 0      00   011112222333444333211     222     12211110000


Q ss_pred             ccccc-cCCC-chhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CC---eeeeeecccccccc-----
Q psy10189        143 QDVKL-RDMV-PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GA---RKGLFPATYILNME-----  210 (376)
Q Consensus       143 ~~~~~-~~~~-~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~---~~G~~P~~~v~~~~-----  210 (376)
                      ..... ..+. .....+.++.+|.|..+.+|++..|++|.|..+...|||.|.+  +|   +.||||++||..+.     
T Consensus       966 s~Tp~k~g~~~kkpeiAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~r 1045 (1118)
T KOG1029|consen  966 SGTPPKQGPTPKKPEIAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGR 1045 (1118)
T ss_pred             CCCCCCCCCCCCCchhhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCc
Confidence            00000 0111 1124566778999999999999999999999999999999986  33   57999999997542     


Q ss_pred             --------------------------------------cCcchhhhccCCCCCCcccccc
Q psy10189        211 --------------------------------------DDMNWYRAELDGKEGLIPSNYI  232 (376)
Q Consensus       211 --------------------------------------~~~~~~~~~~~~~~g~~p~~~~  232 (376)
                                                            .++.||++..+|..|++|+|||
T Consensus      1046 aTPa~~~v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV 1105 (1118)
T KOG1029|consen 1046 ATPATRPVCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYV 1105 (1118)
T ss_pred             CCCCCCccceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCccccc
Confidence                                                  2567999999999999999998

>KOG0197|consensus

Probab=99.79  E-value=3.9e-19  Score=164.56  Aligned_cols=139  Identities=39%  Similarity=0.724  Sum_probs=120.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCE-EEEEeccCCccceeec--cCCccceecccccc----------ccccccccccCCHH
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQV-LKILNMEDDMNWYRAE--LDGKEGLIPSNYIE----------MKNHDWYYGRITRA   68 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~-i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve----------~~~~~w~~g~isr~   68 (376)
                      .++|+|+|.+..+.+|+|.+||+ ..+++. .+..||.++  ..+.+|++|+|||.          +...+||++.|+|.
T Consensus        13 ~~valyd~~s~~~~dLsf~~Gd~~~~~~~~-~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~isR~   91 (468)
T KOG0197|consen   13 IVVALYDYASRTPEDLSFRKGDVVLILLET-TNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKISRE   91 (468)
T ss_pred             eEEEeccccCCCccccccccCceEEEeecc-CChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhccccHH
Confidence            58999999999999999999999 777775 556788877  37899999999987          34688999999999


Q ss_pred             HHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCC------eeEEEEEEEcCCCcEE--Eecee-ecchhhhHhhhhcc
Q psy10189         69 DAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSD------GVQHFKVLRDSSGKFF--LWVVK-FNSLNELVEYHRTA  137 (376)
Q Consensus        69 ~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~------~v~h~~I~~~~~~~~~--~~~~~-f~sl~~li~~~~~~  137 (376)
                      +|++.|..  ...|+||+|+|++.+++|++|+....      .++|++|.....+.+.  +.... |+++.+|++||+.+
T Consensus        92 ~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~~~~~~~~~~~~F~~l~~lv~~~~~~  171 (468)
T KOG0197|consen   92 EAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGGGLYPYIDERELFSSLQQLVNYYSKN  171 (468)
T ss_pred             HHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCCCeecCCCHHHhhhhHHHHHhhhhcc
Confidence            99976666  56699999999999999999999866      8999999999888777  65554 99999999999987


Q ss_pred             cccc
Q psy10189        138 SVSR  141 (376)
Q Consensus       138 ~~~~  141 (376)
                      ..+.
T Consensus       172 ~~gl  175 (468)
T KOG0197|consen  172 ADGL  175 (468)
T ss_pred             Ccch
Confidence            7553

>KOG0194|consensus

Probab=99.69  E-value=1.8e-16  Score=149.04  Aligned_cols=124  Identities=29%  Similarity=0.484  Sum_probs=99.5

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCc---e-EEEEEeC--CeeEEEEEEEcCCCcEEEeccccCCHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGD---F-SLSVKCS--DGVQHFKVLRDSSGKFFLWVVKFNSLN  307 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~---~-~ls~~~~--~~v~h~~I~~~~~~~~~~~~~~f~sl~  307 (376)
                      +..++||||-+.|++|+.+|.+  +|.||||.+....+.   + .||++..  ..++||.|...++..++.....|+|+.
T Consensus        46 ~~~~~~yHG~l~red~~~lL~~--~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~~F~si~  123 (474)
T KOG0194|consen   46 LRELPYYHGLLPREDAEKLLKN--DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLRKFPTIS  123 (474)
T ss_pred             hhcCccccccccHhHHHHHhCC--CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccccCCcHH
Confidence            4457999999999999999998  999999999876553   3 8999875  789999999887755555679999999


Q ss_pred             HHHHHHhhCCcCCc-ceeeeCCCCCccceEEEeccCCCCCCCCccccccceee-eecCCCCCCccceec
Q psy10189        308 ELVEYHRTASVSRS-QDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK-RRKSAKTKDETTVRE  374 (376)
Q Consensus       308 ~lv~~y~~~~~~~~-~~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~  374 (376)
                      +||.||..+....+ ....|..|+++..|               +|...++.+ ++||+|+||||..|.
T Consensus       124 ~li~~~~~~~~~~~~~~~~L~~PI~r~~W---------------el~H~~v~l~kkLGeGaFGeV~~G~  177 (474)
T KOG0194|consen  124 ELVNYYKFSKLEITGKNFFLKRPIPRQKW---------------ELSHSDIELGKKLGEGAFGEVFKGK  177 (474)
T ss_pred             HHHHHHHhcccceeccceeeccccccccc---------------EEeccCccccceeecccccEEEEEE
Confidence            99999999987764 34458888766544               344444444 599999999998775

>KOG4637|consensus

Probab=99.68  E-value=3.9e-17  Score=142.96  Aligned_cols=99  Identities=26%  Similarity=0.526  Sum_probs=88.9

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  313 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y  313 (376)
                      +..++||||.|+|+++...|+..|||+||||+..+-+|+|+|+++.++.++-++|...+....|.+...|+|+.+||+||
T Consensus        20 L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~d~ltf~SVVelIn~y   99 (464)
T KOG4637|consen   20 LQDAEWYWGDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFSDPLTFNSVVELINHY   99 (464)
T ss_pred             hhhccccccccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCCCchhhHHHHHHHHHH
Confidence            67789999999999999999999999999999877799999999999999999998866545567789999999999999


Q ss_pred             hhCCcCC---cceeeeCCCCCc
Q psy10189        314 RTASVSR---SQDVKLRDMVPE  332 (376)
Q Consensus       314 ~~~~~~~---~~~~~L~~p~~~  332 (376)
                      ++.++..   .++++|.+||.+
T Consensus       100 r~~SL~~yN~~LDvrLlyPVs~  121 (464)
T KOG4637|consen  100 RNESLAQYNPKLDVRLLYPVSR  121 (464)
T ss_pred             hhhHHHhhCcccceeeechHHH
Confidence            9998774   368999999864

>KOG4225|consensus

Probab=99.65  E-value=1.5e-16  Score=142.59  Aligned_cols=175  Identities=28%  Similarity=0.464  Sum_probs=105.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccccccccccccCCHHHHHHHhcCCCC
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE   79 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~   79 (376)
                      +++|+|+|.+..+.||+|++||.|.+..+ .+.+|.++..  .+..|.||.+||++....-.+..         + ..++
T Consensus       306 ~a~A~y~F~~~s~~Els~~kge~v~L~r~-vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~---------~-~~~~  374 (489)
T KOG4225|consen  306 EAIAKYNFNADSPVELSLRKGERVTLTRQ-VDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELP---------L-DYPD  374 (489)
T ss_pred             cccccCCCCCCCchhcccccCceEEEEEe-ccCceeeccccccccccccchhHhhhhhccccccc---------c-ccCC
Confidence            47899999999999999999999999987 6679999995  47899999999997654311110         0 0000


Q ss_pred             ccEEEeecCCCCCceEEEEEe----CCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccccccccccCCCchhh
Q psy10189         80 GAFLIRVSESSPGDFSLSVKC----SDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEEC  155 (376)
Q Consensus        80 G~flvR~s~~~~~~~~Ls~~~----~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~~~~  155 (376)
                      -.  ++.+.+ ..-+.++...    -..++.........+                 ++...-...........+. ...
T Consensus       375 ~p--~~p~~s-~~~~~~~~~s~~~~~~~~~t~~~~q~~~n-----------------~~qepr~~~~~~~~~qt~~-~~l  433 (489)
T KOG4225|consen  375 LP--IPPRSS-NELRPLSEDSMKNAWPQTHTQSSTQPPEN-----------------FPQEPRVTEKNDAHSQTSS-EPL  433 (489)
T ss_pred             CC--CCcccc-hhhcccccchhhhcccccccccccCCCCC-----------------cccccccccccCcccCCCC-Ccc
Confidence            00  000000 0000000000    000000000000000                 0000000000000000000 113


Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeecccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILN  208 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~  208 (376)
                      .++|||.|.++.++||.|+.||+|.|++++++||+.|+  ..|..|.||.|||++
T Consensus       434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence            48999999999999999999999999999999999994  689999999999986

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.63  E-value=2.5e-16  Score=101.58  Aligned_cols=49  Identities=41%  Similarity=0.794  Sum_probs=44.1

Q ss_pred             EeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccc
Q psy10189          5 AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE   54 (376)
Q Consensus         5 al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve   54 (376)
                      |+|+|.|++++||+|++||+|.|+.+ .+++||.++.+|+.|+||+|||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEK-SDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEE-SSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEe-CCCCEEEEEECCEEEEECHHhCC
Confidence            79999999999999999999999986 67789999999999999999985

...

>smart00252 SH2 Src homology 2 domains

Probab=99.61  E-value=5.2e-15  Score=108.34  Aligned_cols=81  Identities=48%  Similarity=0.799  Sum_probs=75.0

Q ss_pred             cccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHhhhhc
Q psy10189         58 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRT  136 (376)
Q Consensus        58 ~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~~~~  136 (376)
                      .+||||.|+|++|+.+|...++|+||||.|.+.++.|+||+..++.++|++|.....+.|.+.+ ..|+++.+||++|..
T Consensus         1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~   80 (84)
T smart00252        1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQK   80 (84)
T ss_pred             CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhh
Confidence            3799999999999999999889999999999989999999999999999999988878898887 569999999999987


Q ss_pred             cc
Q psy10189        137 AS  138 (376)
Q Consensus       137 ~~  138 (376)
                      ++
T Consensus        81 ~~   82 (84)
T smart00252       81 NS   82 (84)
T ss_pred             CC
Confidence            65

Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.

>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []

Probab=99.58  E-value=6.7e-15  Score=105.79  Aligned_cols=75  Identities=47%  Similarity=0.802  Sum_probs=70.3

Q ss_pred             cccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHhhh
Q psy10189         60 WYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH  134 (376)
Q Consensus        60 w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~~  134 (376)
                      ||||.|+|++|+.+|.. .++|+||||.|.+.++.|+||+..++.+.|++|.....+.+++.. ..|+||.+||+||
T Consensus         1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~~F~sl~~LV~~y   77 (77)
T PF00017_consen    1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENGGYFLSDGKKFPSLSDLVEHY   77 (77)
T ss_dssp             TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTSEEESSTSSEBSSHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCceEEccCCCcCCCHHHHHHhC
Confidence            99999999999999999 999999999999999999999999999999999999988777765 4599999999987

Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....

>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr)

Probab=99.57  E-value=2.2e-14  Score=107.54  Aligned_cols=81  Identities=43%  Similarity=0.746  Sum_probs=74.7

Q ss_pred             ccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ceeecchhhhHhhhhcc
Q psy10189         59 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTA  137 (376)
Q Consensus        59 ~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~li~~~~~~  137 (376)
                      +||||.|+|++|+.+|.+.++|+||||.|.+.++.|+||+..++.+.|++|.....+.++.. ...|+|+.+||++|...
T Consensus         1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~   80 (94)
T cd00173           1 PWYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKN   80 (94)
T ss_pred             CccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhC
Confidence            59999999999999999999999999999988999999999999999999998887776666 55699999999999988


Q ss_pred             cc
Q psy10189        138 SV  139 (376)
Q Consensus       138 ~~  139 (376)
                      ++
T Consensus        81 ~~   82 (94)
T cd00173          81 PL   82 (94)
T ss_pred             cc
Confidence            75

SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.45  E-value=1.2e-13  Score=89.02  Aligned_cols=49  Identities=55%  Similarity=1.110  Sum_probs=45.1

Q ss_pred             hcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccc
Q psy10189        159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL  207 (376)
Q Consensus       159 al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~  207 (376)
                      |+|+|.++.++||+|++||+|.|+.+.+++||.|+.+|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            6899999999999999999999999999999999999999999999985

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.45  E-value=6.5e-14  Score=93.23  Aligned_cols=53  Identities=40%  Similarity=0.696  Sum_probs=46.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEE-eccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKIL-NMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~-~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|++||.++.+++|+|++||+|.|+ ++ .+++||.++.+|+.||||++||+.
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~-~~~~ww~~~~~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEK-DDDGWWLGENNGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEE-CSTSEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEee-cCCCEEEEEECCcEEEEcHHHEEE
Confidence            379999999999999999999999999 55 556899999999999999999974

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.38  E-value=4e-13  Score=86.66  Aligned_cols=46  Identities=41%  Similarity=0.774  Sum_probs=40.3

Q ss_pred             EEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceecc
Q psy10189          4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPS   50 (376)
Q Consensus         4 ~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~   50 (376)
                      +|+|+|+++.++||+|++||.|.|+++ .+++||.++.  ++++||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEK-SDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEE-SSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEe-cCCCEEEEEECCCCcEEEeeC
Confidence            699999999999999999999999997 5558999984  379999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG3632|consensus

Probab=99.33  E-value=1.8e-12  Score=126.49  Aligned_cols=153  Identities=32%  Similarity=0.564  Sum_probs=101.5

Q ss_pred             EEEEeecCCC--------CCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHH
Q psy10189          2 EAIAKHDFNA--------TAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERL   73 (376)
Q Consensus         2 ~~~al~~y~~--------~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~   73 (376)
                      .+||||||++        ..+.||+|++||+|.|+...|.++++.+.++|..|+||.|+|......      + ++....
T Consensus      1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd------~-eq~~~r 1212 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVD------N-EQTDRR 1212 (1335)
T ss_pred             eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCC------c-HHHHHH
Confidence            4799999998        567799999999999998778889999999999999999999754322      1 111111


Q ss_pred             hcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccccccccccCCCch
Q psy10189         74 LSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPE  153 (376)
Q Consensus        74 l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~~  153 (376)
                      +.   .|..        +..+......              |.                     .....+.-.++.   .
T Consensus      1213 ~r---qG~l--------Psv~~~e~~~--------------gs---------------------~~s~g~~k~vp~---~ 1243 (1335)
T KOG3632|consen 1213 WR---QGLL--------PSVPTEEMRK--------------GS---------------------AFSDGQQKMVPW---P 1243 (1335)
T ss_pred             HH---hccC--------CCCCchhhhc--------------cc---------------------ccCCCCccccCC---c
Confidence            11   0100        0000000000              00                     000000001110   1


Q ss_pred             hhhhhhcccCCCCCC-------CceeccCCCEEEEEec-CCCcceeeeeCCeeeeeecccccccc
Q psy10189        154 ECLVQALYDFTPQEP-------GELEFRRGDVITVTDR-SDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       154 ~~~~~al~~~~~~~~-------~eL~~~~g~~i~v~~~-~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      ..+.+|.+||.+++.       .+|.|+.||+|+|..+ .+++.+.|.++|+.|++|++++...+
T Consensus      1244 p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p~ 1308 (1335)
T KOG3632|consen 1244 PRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAPN 1308 (1335)
T ss_pred             hhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCCC
Confidence            135778899988743       5899999999999976 56779999999999999999998753

>KOG0790|consensus

Probab=99.26  E-value=7.9e-12  Score=112.80  Aligned_cols=95  Identities=34%  Similarity=0.596  Sum_probs=82.8

Q ss_pred             ccccccccccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCC---------eeEEEEEEEcCCCcEE
Q psy10189         49 PSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSD---------GVQHFKVLRDSSGKFF  118 (376)
Q Consensus        49 P~nyve~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~---------~v~h~~I~~~~~~~~~  118 (376)
                      |.|.-++.+..||||.++..+|+++|.. +..|+||||+|.+.||+|+||+..++         +|.|..|...+ ++|.
T Consensus       101 pl~cAdptserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~-~kyd  179 (600)
T KOG0790|consen  101 PLNCADPTSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQE-GKYD  179 (600)
T ss_pred             CCccCCchhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecc-cccc
Confidence            5666677788899999999999999955 89999999999999999999999866         79999999766 7888


Q ss_pred             Eece-eecchhhhHhhhhccccccccc
Q psy10189        119 LWVV-KFNSLNELVEYHRTASVSRSQD  144 (376)
Q Consensus       119 ~~~~-~f~sl~~li~~~~~~~~~~~~~  144 (376)
                      +.+. +|+|+.+||+||+.+++-....
T Consensus       180 VGgge~F~sltdLidhykknpmvEt~g  206 (600)
T KOG0790|consen  180 VGGGERFDSLTDLVEHYKKNPMVETLG  206 (600)
T ss_pred             cCCccccchHHHHHHHhccCchhhhcc
Confidence            8765 5999999999999999765543

>KOG2199|consensus

Probab=99.23  E-value=2.6e-12  Score=114.28  Aligned_cols=52  Identities=35%  Similarity=0.691  Sum_probs=49.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve   54 (376)
                      +++|||||+|..++||||++||+|.|++. .+.+||.|...+..|+||+|||.
T Consensus       217 kVRALYDFeAaE~nELsFkaGdIItVLd~-s~~~WWKG~~~~~~GlFPsnfVT  268 (462)
T KOG2199|consen  217 KVRALYDFEAAEDNELSFKAGDIITVLDD-SDPNWWKGENHRGIGLFPSNFVT  268 (462)
T ss_pred             hhhhhhcccccCCCccceecCcEEEEccc-CCcchhccccCCcccccchhhhh
Confidence            58999999999999999999999999996 77799999999999999999986

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.21  E-value=1.3e-11  Score=82.08  Aligned_cols=53  Identities=40%  Similarity=1.010  Sum_probs=47.4

Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEE-ecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVT-DRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~-~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ++|+++|.+..+++|+|.+||+|.|+ ++..++||.|+.+|+.||||.++|+++
T Consensus         2 ~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    2 YRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             EEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            57899999999999999999999999 788889999999999999999999863

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>smart00326 SH3 Src homology 3 domains

Probab=99.18  E-value=3.2e-11  Score=81.26  Aligned_cols=53  Identities=43%  Similarity=0.820  Sum_probs=48.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC-Cccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~-g~~G~vP~nyve~   55 (376)
                      .++|+|+|.+..+++|+|++||+|.|+.. .+.+||.++.. +++||||++|++.
T Consensus         4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~-~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        4 QVRALYDYTAQDPDELSFKKGDIITVLEK-SDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             EEEEeeeeCCCCCCCCCCCCCCEEEEEEc-CCCCeEEEEeCCCCEEEEchHHEEE
Confidence            68999999999999999999999999987 46789999865 9999999999864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG2070|consensus

Probab=99.18  E-value=1.2e-11  Score=112.87  Aligned_cols=54  Identities=33%  Similarity=0.707  Sum_probs=49.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .+.|.|+|+..++|||+|.+||+|.|-+. .+.|||+|.++|+.||||+|||..+
T Consensus        19 vvrAkf~F~gsNnDELsf~KgDvItVTq~-eeGGWWEGTlng~TGWFPsnYV~ei   72 (661)
T KOG2070|consen   19 VVRAKFNFQGSNNDELSFSKGDVITVTQV-EEGGWWEGTLNGRTGWFPSNYVREI   72 (661)
T ss_pred             EEEEEeecccCCCceeccccCCEEEEEEe-ccCcceeccccCccCccchHHHHHH
Confidence            47899999999999999999999999986 6679999999999999999999743

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.16  E-value=5.3e-11  Score=78.98  Aligned_cols=52  Identities=42%  Similarity=0.776  Sum_probs=46.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCC-ccceecccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG-KEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g-~~G~vP~nyve   54 (376)
                      .++|+|+|.+..+++|+|.+||+|.|++. .+++||.++..+ ++||||++|++
T Consensus         1 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~-~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           1 YVRALYDYDARDPDELSFKKGDIIEVLEK-SDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             CEEEEEeeCCCCCCCCCCCCCCEEEEEEc-CCCCeEEEEECCCCEEEEccccCc
Confidence            36899999999999999999999999987 566899999654 99999999986

>KOG2199|consensus

Probab=99.15  E-value=1.8e-11  Score=108.93  Aligned_cols=57  Identities=46%  Similarity=0.818  Sum_probs=54.0

Q ss_pred             hhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       153 ~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ....++|||||++.+++||+|++||+|+|++..+.+||.|.+.+..|+||+|||...
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~  270 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTAD  270 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhh
Confidence            346899999999999999999999999999999999999999999999999999875

>KOG1930|consensus

Probab=99.12  E-value=6.9e-11  Score=105.89  Aligned_cols=97  Identities=30%  Similarity=0.424  Sum_probs=79.5

Q ss_pred             ccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeC---------------CeeEEEEEEEcCCCc
Q psy10189        231 YIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS---------------DGVQHFKVLRDSSGK  295 (376)
Q Consensus       231 ~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~---------------~~v~h~~I~~~~~~~  295 (376)
                      ++.-.++-||-.+|+|++|.+||+.++.|+|+||+|.+-.|.|-|.++..               .-|+||.|...++|-
T Consensus       206 FV~DTSKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGV  285 (483)
T KOG1930|consen  206 FVKDTSKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGV  285 (483)
T ss_pred             eeecccccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCce
Confidence            34456778999999999999999999999999999999999999999861               348999999887773


Q ss_pred             EEEe---ccccCCHHHHHHHHhhCCcCCcceeeeCCC
Q psy10189        296 FFLW---VVKFNSLNELVEYHRTASVSRSQDVKLRDM  329 (376)
Q Consensus       296 ~~~~---~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p  329 (376)
                      -.-+   +.+|.||.+||--|.-.+|.+  .++|+.|
T Consensus       286 kLKGC~nEP~FGSLSALV~QHSIt~LAL--PckL~iP  320 (483)
T KOG1930|consen  286 KLKGCDNEPVFGSLSALVYQHSITALAL--PCKLVIP  320 (483)
T ss_pred             eccCCCCCCccchhHHHHhhccchhhhc--ceeEecc
Confidence            3332   589999999998888777777  5555443

>KOG1118|consensus

Probab=99.11  E-value=2.7e-11  Score=104.25  Aligned_cols=54  Identities=35%  Similarity=0.673  Sum_probs=50.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .|.|+|||++.+++||-|++||+|.|.+. -|++||.|..+|..|+||.|||+..
T Consensus       308 ~cralYdFepenEgEL~fkeGDlI~l~~Q-IdenWyeG~~~g~sG~FPvnYv~vl  361 (366)
T KOG1118|consen  308 CCRALYDFEPENEGELDFKEGDLITLTNQ-IDENWYEGEKHGESGMFPVNYVEVL  361 (366)
T ss_pred             hheeeeccCCCCCCccCcccCceeeehhh-cCcchhhheecCccCccccceeEEe
Confidence            48999999999999999999999999997 6679999999999999999999854

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.11  E-value=9.4e-11  Score=75.54  Aligned_cols=46  Identities=41%  Similarity=0.967  Sum_probs=41.9

Q ss_pred             hhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeec
Q psy10189        158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPA  203 (376)
Q Consensus       158 ~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~  203 (376)
                      +|+|+|.++.++||+|++||.+.|+++.+++||.++.  +++.|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            4899999999999999999999999999999999996  379999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2070|consensus

Probab=98.99  E-value=1.7e-10  Score=105.33  Aligned_cols=55  Identities=38%  Similarity=0.850  Sum_probs=52.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|-|.|...+.+||+|.+||+|+|....++|||.|+++|++||||+|||..+
T Consensus        18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~ei   72 (661)
T KOG2070|consen   18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREI   72 (661)
T ss_pred             eEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999765

>KOG0515|consensus

Probab=98.94  E-value=4.1e-10  Score=103.90  Aligned_cols=56  Identities=36%  Similarity=0.713  Sum_probs=49.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC--CccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED--DMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~--~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .+.|||||+|+.+|||+|++||.+.||++++  +..||.++.+|++||||.||+.+..
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP  742 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP  742 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence            4789999999999999999999999999833  3368888899999999999998754

>KOG1118|consensus

Probab=98.86  E-value=8.6e-10  Score=95.15  Aligned_cols=56  Identities=41%  Similarity=0.917  Sum_probs=53.6

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..+|+|+|+|++++++||.|++||+|+|++..+.+||.|...|..|+||.|||+++
T Consensus       306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vl  361 (366)
T KOG1118|consen  306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVL  361 (366)
T ss_pred             chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEe
Confidence            36799999999999999999999999999999999999999999999999999876

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.83  E-value=4.2e-09  Score=69.67  Aligned_cols=52  Identities=44%  Similarity=1.085  Sum_probs=47.3

Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCC-eeeeeecccccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKGLFPATYILN  208 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~-~~G~~P~~~v~~  208 (376)
                      +.++|+|.+..+++|+|.+||.+.+++..+.+||.++..+ +.|+||.+|+++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   54 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVEE   54 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCcC
Confidence            4689999999999999999999999999889999999755 999999999863

>smart00326 SH3 Src homology 3 domains

Probab=98.80  E-value=4.7e-09  Score=70.49  Aligned_cols=53  Identities=51%  Similarity=1.155  Sum_probs=49.0

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC-Ceeeeeecccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYILN  208 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-~~~G~~P~~~v~~  208 (376)
                      .++|+++|.+..+++|++.+||.+.+++....+||.++.. ++.|+||.+|++.
T Consensus         4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        4 QVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence            4679999999999999999999999999988999999976 9999999999875

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=98.73  E-value=1.9e-07  Score=79.52  Aligned_cols=170  Identities=24%  Similarity=0.360  Sum_probs=113.0

Q ss_pred             cccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCC-eeEEEEEEEcCCC-------cEEEeceeec
Q psy10189         54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD-GVQHFKVLRDSSG-------KFFLWVVKFN  125 (376)
Q Consensus        54 e~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~-~v~h~~I~~~~~~-------~~~~~~~~f~  125 (376)
                      +.+..|-|+ +++-.+|++.|.+...|..++|+|.......+++.+..+ ..+|+.|...+..       ...+.+..|.
T Consensus        34 R~I~HP~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~~~ye  112 (220)
T PF14633_consen   34 RVIKHPLFK-NFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGGEEYE  112 (220)
T ss_dssp             HHHCSTTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETTEEES
T ss_pred             ccccCCCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECCeEEC
Confidence            345566665 789999999999999999999999888888888888765 5679999864332       2455566799


Q ss_pred             chhhhHhhhhcccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccc
Q psy10189        126 SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY  205 (376)
Q Consensus       126 sl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~  205 (376)
                      +|+|+|.-|-.+-..               .+..                                              
T Consensus       113 DLDEii~r~V~pm~~---------------~v~~----------------------------------------------  131 (220)
T PF14633_consen  113 DLDEIIARHVEPMAR---------------NVEE----------------------------------------------  131 (220)
T ss_dssp             SHHHHHHHCHHHHHH---------------HHHH----------------------------------------------
T ss_pred             CHHHHHHHHHHHHHH---------------HHHH----------------------------------------------
Confidence            999988866442210               1111                                              


Q ss_pred             ccccccCcchhhhccCCCCCCccccccccccccccccccChHHHHHhhc-----CCCCCceEEeecCCCCCceEEEEEeC
Q psy10189        206 ILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-----NKHEGAFLIRVSESSPGDFSLSVKCS  280 (376)
Q Consensus       206 v~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~-----~~~~G~flvR~s~~~~~~~~ls~~~~  280 (376)
                                                  +.....|.. -++++++++|.     +..--.|.+-.+...+|.|.|++..+
T Consensus       132 ----------------------------~~~h~kf~~-g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~  182 (220)
T PF14633_consen  132 ----------------------------MMNHRKFKD-GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPN  182 (220)
T ss_dssp             ----------------------------HHCSTTEES-S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESS
T ss_pred             ----------------------------HHhCccccC-CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcC
Confidence                                        112222322 24556666664     23346677777778999999999986


Q ss_pred             CeeEEEE--EEEcCCCcEEEeccccCCHHHHHHHHhh
Q psy10189        281 DGVQHFK--VLRDSSGKFFLWVVKFNSLNELVEYHRT  315 (376)
Q Consensus       281 ~~v~h~~--I~~~~~~~~~~~~~~f~sl~~lv~~y~~  315 (376)
                      ...+|..  |...++| |.+.+..|+++.+|+.+++.
T Consensus       183 ~~~~~~~~~v~V~p~G-f~~r~~~f~~~~~L~~~FK~  218 (220)
T PF14633_consen  183 KNPRHEYWPVKVTPDG-FRFRKQVFPSLDRLINWFKK  218 (220)
T ss_dssp             TTS-EEEEEEEE-SSS-EEETTEEESSHHHHHHHHHH
T ss_pred             CCCceEEeeEEEecCc-EEEecccCCCHHHHHHHHhh
Confidence            6555554  7766766 66789999999999999875

>KOG0162|consensus

Probab=98.71  E-value=9.7e-09  Score=98.29  Aligned_cols=54  Identities=35%  Similarity=0.894  Sum_probs=52.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      ..|.|+|+|.+++.+||+|.+||+|.++.....|||.|+.+|+.||||.+||.+
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            679999999999999999999999999999999999999999999999999976

>KOG2546|consensus

Probab=98.68  E-value=7.2e-09  Score=93.42  Aligned_cols=55  Identities=38%  Similarity=0.719  Sum_probs=51.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +++|+|||.+..++||+|.+|-+|-|+.+ ++++||++.++|-.|+||.|||+...
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kk-nddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKK-NDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEe-cCCcchhheecCcceeccCccccccc
Confidence            47899999999999999999999999998 77799999999999999999998654

>KOG3875|consensus

Probab=98.49  E-value=1.6e-08  Score=87.51  Aligned_cols=56  Identities=36%  Similarity=0.474  Sum_probs=45.7

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccC----Cccceeec-c-CCccceecccccccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYRAE-L-DGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~----~~~W~~~~-~-~g~~G~vP~nyve~~~~   58 (376)
                      |.|+|||.+.++.||||++||++.|..+++    +..||... . .+..||+|.|||+....
T Consensus       271 arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  271 ARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            679999999999999999999999997632    22377665 4 56789999999996653

>KOG2856|consensus

Probab=98.34  E-value=9e-08  Score=84.77  Aligned_cols=55  Identities=38%  Similarity=0.764  Sum_probs=49.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeeeC-Ceeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEIG-ARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~-~~~G~~P~~~v~~~  209 (376)
                      ..++|||||.++..+||+|++||.+..+... ..||..|++. |++|++|+|||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            5689999999999999999999999888764 5689999985 99999999999864

>KOG0515|consensus

Probab=98.33  E-value=1.8e-07  Score=86.76  Aligned_cols=55  Identities=33%  Similarity=0.687  Sum_probs=48.8

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecC---CCcceeeeeCCeeeeeecccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~---~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      .+.|+|||+++..+||+|.+||.++|+.+.   +.+||+++++|+.|+||.||+-...
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP  742 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP  742 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence            467899999999999999999999999874   3569999999999999999986543

>KOG1930|consensus

Probab=98.32  E-value=7.8e-07  Score=80.35  Aligned_cols=90  Identities=30%  Similarity=0.464  Sum_probs=72.1

Q ss_pred             cccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeC---------------CeeEEEEEEEcCCCc
Q psy10189         52 YIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS---------------DGVQHFKVLRDSSGK  116 (376)
Q Consensus        52 yve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~---------------~~v~h~~I~~~~~~~  116 (376)
                      ||+..+.-||..+|+|++|-++|.+...|+|+||+|.+-.|.|.|.++..               .-|+||.|.....|.
T Consensus       206 FV~DTSKyWYKP~isREQAIalLrdkePGtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkGV  285 (483)
T KOG1930|consen  206 FVKDTSKYWYKPNISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKGV  285 (483)
T ss_pred             eeecccccccCCCCCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCce
Confidence            44455566999999999999999999999999999999999999988861               237999998877774


Q ss_pred             EEEe---ceeecchhhhHhhhhcccccc
Q psy10189        117 FFLW---VVKFNSLNELVEYHRTASVSR  141 (376)
Q Consensus       117 ~~~~---~~~f~sl~~li~~~~~~~~~~  141 (376)
                      -...   +..|.||..||-.|.-.++..
T Consensus       286 kLKGC~nEP~FGSLSALV~QHSIt~LAL  313 (483)
T KOG1930|consen  286 KLKGCDNEPVFGSLSALVYQHSITALAL  313 (483)
T ss_pred             eccCCCCCCccchhHHHHhhccchhhhc
Confidence            4333   234999999998776655543

>KOG2546|consensus

Probab=98.28  E-value=5.8e-07  Score=81.37  Aligned_cols=55  Identities=33%  Similarity=0.701  Sum_probs=52.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..+.++|||.+..++||+|.+|.+|.|+.+.+++||+|-..+.+|+||.|||+++
T Consensus       424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~  478 (483)
T KOG2546|consen  424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPL  478 (483)
T ss_pred             HHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCcccccc
Confidence            4688999999999999999999999999999999999999999999999999986

>KOG0194|consensus

Probab=98.23  E-value=5.1e-06  Score=79.04  Aligned_cols=95  Identities=36%  Similarity=0.619  Sum_probs=73.6

Q ss_pred             ccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCc---e-EEEEEeC--CeeEEEEEEEcCCCcEEEeceeecchhhh
Q psy10189         57 NHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGD---F-SLSVKCS--DGVQHFKVLRDSSGKFFLWVVKFNSLNEL  130 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~---~-~Ls~~~~--~~v~h~~I~~~~~~~~~~~~~~f~sl~~l  130 (376)
                      ..+||||-+.|++++.+|.+  +|.||||.+...++.   + .||+...  ..++|+.|....+..++.....|.++.+|
T Consensus        48 ~~~~yHG~l~red~~~lL~~--~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~~~~~~~~~F~si~~l  125 (474)
T KOG0194|consen   48 ELPYYHGLLPREDAEKLLKN--DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNLFFFEGLRKFPTISEL  125 (474)
T ss_pred             cCccccccccHhHHHHHhCC--CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCeeEEeccccCCcHHHH
Confidence            36899999999999999987  999999999887653   3 8888885  78899999987775555555679999999


Q ss_pred             Hhhhhccccccccc-ccccCCCch
Q psy10189        131 VEYHRTASVSRSQD-VKLRDMVPE  153 (376)
Q Consensus       131 i~~~~~~~~~~~~~-~~~~~~~~~  153 (376)
                      +.||..+...-... ..+..|.++
T Consensus       126 i~~~~~~~~~~~~~~~~L~~PI~r  149 (474)
T KOG0194|consen  126 VNYYKFSKLEITGKNFFLKRPIPR  149 (474)
T ss_pred             HHHHHhcccceeccceeecccccc
Confidence            99999876543322 234444443

>KOG3697|consensus

Probab=98.17  E-value=2.6e-06  Score=73.22  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeec-----------------------------------------------
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVS-----------------------------------------------  266 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s-----------------------------------------------  266 (376)
                      ....+|++|.+++.++++.|..  +|.|++|.+                                               
T Consensus       198 p~k~pp~~g~l~~~~~q~~l~~--~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~  275 (345)
T KOG3697|consen  198 PSKMPPPGGFLDTRLKQRPLAP--DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDE  275 (345)
T ss_pred             cccCCCCCCccchhhhhccCCc--ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccc
Confidence            4567999999999999998864  677777643                                               


Q ss_pred             CCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHHhhCCcCCc---ceeeeCCCCCc
Q psy10189        267 ESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS---QDVKLRDMVPE  332 (376)
Q Consensus       267 ~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y~~~~~~~~---~~~~L~~p~~~  332 (376)
                      .+++|.|+|+=..++..||..+. ++.|-....++.|+|+..||.||..++++.-   ..+.|++||.+
T Consensus       276 ~~~~gqyvltgl~~~~~khlllv-dpegvvrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r  343 (345)
T KOG3697|consen  276 TTTPGQYVLTGLQSGQPKHLLLV-DPEGVVRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVER  343 (345)
T ss_pred             cCCCccEEEecccCCCcceEEEE-CCccceecccchhhHHHHHHHHhhhccCceecCcchhhhhCcccc
Confidence            34677888888888999998875 6778777778999999999999999988753   46678888754

>KOG3875|consensus

Probab=98.01  E-value=2.2e-06  Score=74.52  Aligned_cols=58  Identities=29%  Similarity=0.643  Sum_probs=49.5

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCC-----Ccceeeee--CCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSD-----QHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~-----~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      +..++|+|||.+.++.||+|++||.+.|..+.+     .+||..+.  ++..||+|.|||+.+..
T Consensus       268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            468999999999999999999999999987643     45887764  68899999999998754

>KOG3751|consensus

Probab=97.97  E-value=4.5e-06  Score=77.75  Aligned_cols=85  Identities=34%  Similarity=0.592  Sum_probs=71.9

Q ss_pred             cccccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcC-CCcEE--Ee--ccccC
Q psy10189        232 IEMKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS-SGKFF--LW--VVKFN  304 (376)
Q Consensus       232 ~~~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~-~~~~~--~~--~~~f~  304 (376)
                      .-+..+.|||+.|+|+++.+++.  +.-+|.|++|+|.+++..|++++....+|+||+|...+ +|..+  .+  ...|.
T Consensus       514 ~~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~s  593 (622)
T KOG3751|consen  514 AIHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFS  593 (622)
T ss_pred             hhcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCcccc
Confidence            33678899999999999999887  35789999999999999999999999999999998754 34333  33  37999


Q ss_pred             CHHHHHHHHhhC
Q psy10189        305 SLNELVEYHRTA  316 (376)
Q Consensus       305 sl~~lv~~y~~~  316 (376)
                      ++.+|+++|+-+
T Consensus       594 d~~ql~~~~ql~  605 (622)
T KOG3751|consen  594 DLIQLVEFYQLN  605 (622)
T ss_pred             ccccccchhhcC
Confidence            999999999877

>KOG3655|consensus

Probab=97.94  E-value=3.6e-06  Score=77.68  Aligned_cols=55  Identities=36%  Similarity=0.747  Sum_probs=51.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~  209 (376)
                      ..+.|+|+|+|.++.|++|-.++.|++|...++|||.|.. .|..|+||+|||..+
T Consensus       428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            5688999999999999999999999999999999999986 789999999999764

>KOG1702|consensus

Probab=97.90  E-value=9.9e-06  Score=66.19  Aligned_cols=55  Identities=31%  Similarity=0.582  Sum_probs=49.6

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILN  208 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~  208 (376)
                      +..++|.|||.|++.++++|.-||.|.-....++||..|+.  +|..|..|+||++-
T Consensus       207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~  263 (264)
T KOG1702|consen  207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF  263 (264)
T ss_pred             CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence            36899999999999999999999999988999999988875  78999999999863

>KOG2528|consensus

Probab=97.80  E-value=1.1e-05  Score=73.73  Aligned_cols=79  Identities=28%  Similarity=0.397  Sum_probs=64.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccccccccccCCHHHHHHHhcCCCCc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEG   80 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G   80 (376)
                      +++|+|||.+.+..||++.+||++.+......++||.+. ..|.+|+||+.||+...         ..++..++...+.+
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~---------~a~~sSs~As~p~~   74 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR---------LAVASSSLASIPFA   74 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec---------cccchhccCCCCCC
Confidence            578999999999999999999999999887888999999 78999999999999765         23455555556666


Q ss_pred             cEEEeecCC
Q psy10189         81 AFLIRVSES   89 (376)
Q Consensus        81 ~flvR~s~~   89 (376)
                      -+.+-+..+
T Consensus        75 v~sl~~p~s   83 (490)
T KOG2528|consen   75 VFSLTDPTS   83 (490)
T ss_pred             cccccCccc
Confidence            666655433

>KOG3523|consensus

Probab=97.75  E-value=5e-06  Score=78.78  Aligned_cols=55  Identities=29%  Similarity=0.582  Sum_probs=48.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~~   57 (376)
                      ++.+..+|.|..+|||++..+|++.|+++ .++||++|.  .+|..||||+.|++.+.
T Consensus       610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k-~~DGWl~GeRl~Dge~GWFP~~~veeI~  666 (695)
T KOG3523|consen  610 QVQCVHSYKAKQPDELTLELADVVNVLQK-TPDGWLEGERLRDGERGWFPSSYVEEIT  666 (695)
T ss_pred             hhheeeccccCCCceeeeehhhhhhhhhc-CCCccccccccccCccCcchHHHHHHhc
Confidence            35678999999999999999999999997 667999998  68999999999998543

>KOG1843|consensus

Probab=97.75  E-value=1.3e-05  Score=72.42  Aligned_cols=54  Identities=41%  Similarity=0.956  Sum_probs=49.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC--CcceeeeeCCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD--QHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      ..+.|+|+|..+...+|+|++||+|+++.+.+  ..||.++.+++.|+||.|||.+
T Consensus       417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            37889999999999999999999999998865  5699999999999999999975

>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A

Probab=97.72  E-value=0.0002  Score=61.29  Aligned_cols=79  Identities=20%  Similarity=0.366  Sum_probs=58.8

Q ss_pred             cccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeC-CeeEEEEEEEcCCC-------cEEEeccccCCHH
Q psy10189        236 NHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS-DGVQHFKVLRDSSG-------KFFLWVVKFNSLN  307 (376)
Q Consensus       236 ~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~-~~v~h~~I~~~~~~-------~~~~~~~~f~sl~  307 (376)
                      ..|-|+ +++-.+|++.|.....|.++||+|+......+++++.. +-..|+.|...+..       .+.+++..|.+|.
T Consensus        37 ~HP~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~~~yeDLD  115 (220)
T PF14633_consen   37 KHPLFK-NFNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGGEEYEDLD  115 (220)
T ss_dssp             CSTTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETTEEESSHH
T ss_pred             cCCCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECCeEECCHH
Confidence            345555 89999999999998899999999966566789999974 55579888764321       3667789999999


Q ss_pred             HHHHHHhh
Q psy10189        308 ELVEYHRT  315 (376)
Q Consensus       308 ~lv~~y~~  315 (376)
                      |||..|-.
T Consensus       116 Eii~r~V~  123 (220)
T PF14633_consen  116 EIIARHVE  123 (220)
T ss_dssp             HHHHHCHH
T ss_pred             HHHHHHHH
Confidence            99998744

>KOG1856|consensus

Probab=97.71  E-value=0.00038  Score=71.06  Aligned_cols=164  Identities=27%  Similarity=0.423  Sum_probs=116.0

Q ss_pred             cCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCee-EEEEEEEcCCCc-------EEEeceeecchhhhHhhhh
Q psy10189         64 RITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV-QHFKVLRDSSGK-------FFLWVVKFNSLNELVEYHR  135 (376)
Q Consensus        64 ~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v-~h~~I~~~~~~~-------~~~~~~~f~sl~~li~~~~  135 (376)
                      +++-++|+..|.....|-+++|+|.......++..+..+.+ +|+.|.....-.       ..+.+..|..|.++|.-|-
T Consensus      1113 n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLDEiI~r~v 1192 (1299)
T KOG1856|consen 1113 NLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLDEIIARYV 1192 (1299)
T ss_pred             CCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHHHHHHHHH
Confidence            46788999999999999999999988777778887776655 677776433222       2334455888888887664


Q ss_pred             cccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccCcch
Q psy10189        136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW  215 (376)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  215 (376)
                      .+-..                  .+                                                       
T Consensus      1193 qpm~~------------------~~------------------------------------------------------- 1199 (1299)
T KOG1856|consen 1193 QPMAT------------------NL------------------------------------------------------- 1199 (1299)
T ss_pred             HHHHH------------------HH-------------------------------------------------------
Confidence            32110                  00                                                       


Q ss_pred             hhhccCCCCCCccccccccccccccccccChHHHHHhhc--CCCC---CceEEeecCCCCCceEEEEEeCCeeEEEEEEE
Q psy10189        216 YRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS--NKHE---GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR  290 (376)
Q Consensus       216 ~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~--~~~~---G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~  290 (376)
                                      ..+....+|.+ =++++.+.+|.  .+.+   -.|.+..|...+|.|.||++.+++++|--+..
T Consensus      1200 ----------------~em~nhkyf~~-Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v 1262 (1299)
T KOG1856|consen 1200 ----------------REMTNHKYFFT-GTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKV 1262 (1299)
T ss_pred             ----------------HHHHhhhHhhc-CCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEE
Confidence                            00233344542 25888899886  2223   34555577788999999999999999988877


Q ss_pred             cCCCcEEEeccccCCHHHHHHHHhhCCc
Q psy10189        291 DSSGKFFLWVVKFNSLNELVEYHRTASV  318 (376)
Q Consensus       291 ~~~~~~~~~~~~f~sl~~lv~~y~~~~~  318 (376)
                      .+.| |+..++.|+|+.+|..+++.+-.
T Consensus      1263 ~p~g-~~~rg~~f~tld~L~~~FK~h~~ 1289 (1299)
T KOG1856|consen 1263 VPEG-FRFRGQNFGTLDELCRWFKRHYK 1289 (1299)
T ss_pred             cccc-eEEecccchhHHHHHHHHHHHhc
Confidence            7765 77788999999999999877543

>KOG3557|consensus

Probab=97.70  E-value=1.1e-05  Score=77.06  Aligned_cols=54  Identities=31%  Similarity=0.607  Sum_probs=47.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++.+|||.|++..||++.+||+++|+.  ++..||.++ ..|+.||||+|-+....
T Consensus       502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~--d~R~WW~~kn~~G~~GyvP~nIL~~~~  556 (721)
T KOG3557|consen  502 WVLVLYDFQARNSSELSVKKGEVLEVLD--DGRKWWKVKNGHGRAGYVPSNILAPLQ  556 (721)
T ss_pred             eeeeehhhhcccchhhhhhhhhhhhhhh--ccccceeccCccCCCCCcchhhhccCC
Confidence            3678999999999999999999999997  566899998 67999999999987554

>KOG2222|consensus

Probab=97.66  E-value=7.8e-06  Score=75.31  Aligned_cols=55  Identities=35%  Similarity=0.685  Sum_probs=49.0

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      +.||.||...+++||-|+++|+|.++.. .++.-|.|..||-+||||+.||++.++
T Consensus       551 akal~df~r~dddelgfrkndiitiise-kdehcwvgelnglrgwfpakfvellde  605 (848)
T KOG2222|consen  551 AKALHDFAREDDDELGFRKNDIITIISE-KDEHCWVGELNGLRGWFPAKFVELLDE  605 (848)
T ss_pred             HHHHhhhhhccccccccccccEEEEeec-CCcceeeeccccccccchHHHHHHHHh
Confidence            5689999999999999999999999987 555778899999999999999997543

>KOG3771|consensus

Probab=97.41  E-value=8.1e-05  Score=69.08  Aligned_cols=54  Identities=22%  Similarity=0.259  Sum_probs=45.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .+.|+|+|.+++.+||+|..||+|.|+..++.+.||.|...|..+-.|.+|+.+
T Consensus       402 ~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~~  455 (460)
T KOG3771|consen  402 KVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFPL  455 (460)
T ss_pred             ceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccceec
Confidence            478999999999999999999999999987778899999887766655666543

>KOG3632|consensus

Probab=97.40  E-value=7.8e-05  Score=74.46  Aligned_cols=54  Identities=35%  Similarity=0.760  Sum_probs=48.2

Q ss_pred             EEEeecCCCC-------CCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          3 AIAKHDFNAT-------AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         3 ~~al~~y~~~-------~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .+|.+||+++       .+.||.|+.||+|.|+.+.+++++++|..+|+.|+||+||++-.
T Consensus      1247 mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1247 MVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAP 1307 (1335)
T ss_pred             hhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCC
Confidence            5789999983       45689999999999999889999999999999999999999743

>KOG4773|consensus

Probab=97.34  E-value=5.3e-05  Score=67.27  Aligned_cols=58  Identities=24%  Similarity=0.504  Sum_probs=54.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      .++.|+.+|......||.+.+|+++.++.+.+.+||.|+.++..||+|..|+.+++..
T Consensus       176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~f  233 (386)
T KOG4773|consen  176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDF  233 (386)
T ss_pred             HHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccC
Confidence            5678999999999999999999999999999999999999999999999999998653

>KOG4773|consensus

Probab=97.27  E-value=2.6e-05  Score=69.17  Aligned_cols=53  Identities=25%  Similarity=0.443  Sum_probs=48.5

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      +.|++||......||.|++||++.++.+ ++.+||.|...|..||+|..|++..
T Consensus       178 ~~a~~df~gns~~EL~l~agdV~~~~~r-~ek~W~~gk~R~~~g~yp~sF~~~l  230 (386)
T KOG4773|consen  178 AEASFDFPGNSKLELNLVAGDVEFLLSR-DEKYWLLGKVRGLTGYYPDSFVKQL  230 (386)
T ss_pred             HHhhccCCCCccceeeeehhhHHHHHhh-cccceeeeeeccccccccHHhhhhh
Confidence            4678999999999999999999999997 7779999999999999999998743

>KOG0609|consensus

Probab=97.24  E-value=0.00011  Score=69.19  Aligned_cols=52  Identities=35%  Similarity=0.667  Sum_probs=42.9

Q ss_pred             EEEEeecCCCCCCC-------CccccCCCEEEEEeccCCccceeeccC-----Cccceecccccc
Q psy10189          2 EAIAKHDFNATAED-------ELSFRKSQVLKILNMEDDMNWYRAELD-----GKEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~~~-------eLsf~~Gd~i~v~~~~~~~~W~~~~~~-----g~~G~vP~nyve   54 (376)
                      .+.|+|||++..++       -|+|.+||++.|+++ +|.+||+++..     +..|++|+..++
T Consensus       216 ~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~q-dD~nWWQA~~~~~~~~~~AGLiPS~~~q  279 (542)
T KOG0609|consen  216 FVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQ-DDPNWWQARRVGDPFGGLAGLIPSKELQ  279 (542)
T ss_pred             eehhhcCcCcccCCcccchhcCCcccccceeeeccC-CCcchhhhhcccCccccccccccCHHHH
Confidence            47899999985554       479999999999998 77899999843     456999998876

>KOG4575|consensus

Probab=97.20  E-value=0.00035  Score=66.77  Aligned_cols=52  Identities=21%  Similarity=0.477  Sum_probs=43.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceecccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve   54 (376)
                      .++|+|.+.++.+++|-|-+||+|++..- .+.+||...+  ....|+||+|||-
T Consensus        10 ~vrA~y~w~ge~eGdl~f~egDlie~trI-~dgkwwi~lhrNk~~~g~fpsNFvh   63 (874)
T KOG4575|consen   10 MVRALYAWPGEREGDLKFTEGDLIEQTRI-EDGKWWILLHRNKDEDGLFPSNFVH   63 (874)
T ss_pred             eEEeeccCCCCcccccceecccceeEEee-ccceeeeeeeecccccccCccccee
Confidence            57899999999999999999999999985 5556666653  4567999999983

>KOG2222|consensus

Probab=97.11  E-value=0.00019  Score=66.43  Aligned_cols=56  Identities=36%  Similarity=0.740  Sum_probs=53.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      .+++||.||.-.+++||.|++.|++++++..+..-|.|..+|-.||||+.||+.++
T Consensus       549 krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             HHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999998765

>KOG3523|consensus

Probab=97.05  E-value=0.00012  Score=69.73  Aligned_cols=57  Identities=26%  Similarity=0.637  Sum_probs=51.5

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccccC
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDD  212 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~  212 (376)
                      ++.+...|.+..+++|++..+|++.|+.+..+||..|..  .|..||||..|++.+..+
T Consensus       610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~  668 (695)
T KOG3523|consen  610 QVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP  668 (695)
T ss_pred             hhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence            466778899999999999999999999999999999974  789999999999998654

>KOG3751|consensus

Probab=96.67  E-value=0.0012  Score=61.97  Aligned_cols=81  Identities=35%  Similarity=0.646  Sum_probs=66.6

Q ss_pred             ccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEc-CCCcEEEec----eeecchhh
Q psy10189         57 NHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD-SSGKFFLWV----VKFNSLNE  129 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~-~~~~~~~~~----~~f~sl~~  129 (376)
                      ...|+|+.|+++++..++..  ..+|.|++|+|.++|..+++++....+++|+.|... ..|..+++.    .+|.++..
T Consensus       518 sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~~t~~~g~t~~sd~~q  597 (622)
T KOG3751|consen  518 SQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTFFTLDDGPTKFSDLIQ  597 (622)
T ss_pred             cccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCceeeccCCCCcccccccc
Confidence            46799999999999998877  689999999999999999999999999999999863 444444332    23888888


Q ss_pred             hHhhhhcc
Q psy10189        130 LVEYHRTA  137 (376)
Q Consensus       130 li~~~~~~  137 (376)
                      ++++|+-+
T Consensus       598 l~~~~ql~  605 (622)
T KOG3751|consen  598 LVEFYQLN  605 (622)
T ss_pred             ccchhhcC
Confidence            88888765

>KOG3557|consensus

Probab=96.51  E-value=0.00071  Score=65.06  Aligned_cols=57  Identities=28%  Similarity=0.661  Sum_probs=49.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~  212 (376)
                      ..+..+|||.++...||++.+|+++.|+... ..||.++. .|+.|+||.|.+.++..+
T Consensus       501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~-R~WW~~kn~~G~~GyvP~nIL~~~~~~  558 (721)
T KOG3557|consen  501 KWVLVLYDFQARNSSELSVKKGEVLEVLDDG-RKWWKVKNGHGRAGYVPSNILAPLQPE  558 (721)
T ss_pred             eeeeeehhhhcccchhhhhhhhhhhhhhhcc-ccceeccCccCCCCCcchhhhccCCCc
Confidence            4678899999999999999999999998644 67999886 799999999999887543

>KOG4429|consensus

Probab=96.45  E-value=0.0025  Score=55.39  Aligned_cols=55  Identities=20%  Similarity=0.231  Sum_probs=51.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..|.++|.|+++.+++|....|+++.+.++...+||.|++.|..|-||+.+++..
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            5689999999999999999999999998999999999999999999999998754

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=96.40  E-value=0.0033  Score=41.34  Aligned_cols=37  Identities=32%  Similarity=0.721  Sum_probs=30.2

Q ss_pred             cccCCCEEEEEeccCCccceee-ccCCccceecccccc
Q psy10189         18 SFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIE   54 (376)
Q Consensus        18 sf~~Gd~i~v~~~~~~~~W~~~-~~~g~~G~vP~nyve   54 (376)
                      .+..|+.|.|+....+.+|+++ ..+|.+|||+++||+
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            6789999999987454449999 578999999999974

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG4566|consensus

Probab=96.35  E-value=0.0063  Score=53.22  Aligned_cols=83  Identities=27%  Similarity=0.440  Sum_probs=66.8

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-------c-cccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-------V-VKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-------~-~~f~s  305 (376)
                      +...+||+|.+++.+|+..|...+.|+|+||+|...+-.+.|+++....-+..+|...+ +.+..+       . ..|++
T Consensus        49 ~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~-~sfr~ds~~~~~~pl~~~e~  127 (258)
T KOG4566|consen   49 LDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQD-SSFRLDSSHRHTPPLISFED  127 (258)
T ss_pred             cccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccc-cceecccccccCCCcccChh
Confidence            45668999999999999889888999999999987777799999987777777776544 555442       2 48999


Q ss_pred             HHHHHHHHhhCC
Q psy10189        306 LNELVEYHRTAS  317 (376)
Q Consensus       306 l~~lv~~y~~~~  317 (376)
                      +..++++|....
T Consensus       128 ~~~~~~~y~~~~  139 (258)
T KOG4566|consen  128 VEVLIHHYRQSR  139 (258)
T ss_pred             HHHHHHhhhhhh
Confidence            999999995543

>KOG0609|consensus

Probab=96.24  E-value=0.0083  Score=57.02  Aligned_cols=54  Identities=31%  Similarity=0.788  Sum_probs=45.7

Q ss_pred             hhhhhcccCCCCCC-------CceeccCCCEEEEEecCCCcceeeeeC-----Ceeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEP-------GELEFRRGDVITVTDRSDQHWWHGEIG-----ARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~-------~eL~~~~g~~i~v~~~~~~~w~~~~~~-----~~~G~~P~~~v~~  208 (376)
                      ..++|++||.+..+       ..|.|++||++.|+++.|..||.++..     +..|++|+..+..
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            56889999998765       469999999999999999999999853     5689999987654

>KOG3565|consensus

Probab=96.23  E-value=0.0014  Score=64.98  Aligned_cols=55  Identities=20%  Similarity=0.562  Sum_probs=51.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~   56 (376)
                      .+.|+|.|++++++++++.+|+++.|++.+.+++|=.++  .++..|+||.+||+..
T Consensus       580 ~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~  636 (640)
T KOG3565|consen  580 TSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT  636 (640)
T ss_pred             ceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence            578999999999999999999999999988888999999  7899999999999854

>KOG3775|consensus

Probab=96.08  E-value=0.0052  Score=55.39  Aligned_cols=61  Identities=31%  Similarity=0.658  Sum_probs=53.7

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccccCcc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDDMN  214 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~  214 (376)
                      ..+-++++.|.++.++||.+..||-+.|-...++-|..|.+  +|+.|+||+.|+..++.+..
T Consensus       262 e~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ee  324 (482)
T KOG3775|consen  262 EQTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPEE  324 (482)
T ss_pred             chhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCchh
Confidence            35678999999999999999999999998888899999975  79999999999998876543

>KOG1451|consensus

Probab=95.91  E-value=0.0062  Score=58.16  Aligned_cols=55  Identities=27%  Similarity=0.615  Sum_probs=47.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEE-ecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVT-DRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~-~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..+.++|.-.+....+++|..|.++.-. ....+||..|+++|+.|++|.|||+++
T Consensus       757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             ccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence            4577888889999999999999988755 467889999999999999999999873

>KOG2528|consensus

Probab=95.86  E-value=0.0045  Score=57.16  Aligned_cols=55  Identities=31%  Similarity=0.647  Sum_probs=48.5

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEec-CCCcceeeee-CCeeeeeecccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGEI-GARKGLFPATYILNME  210 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~-~~~~G~~P~~~v~~~~  210 (376)
                      ..+++|||......++++..|+++.+... ..++||.|.. +|..|+||++||+...
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR   60 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence            47899999999999999999999999865 5678999985 8999999999998653

>KOG3771|consensus

Probab=95.76  E-value=0.0062  Score=56.90  Aligned_cols=53  Identities=28%  Similarity=0.246  Sum_probs=42.7

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeeeCCeeeeeecccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEIGARKGLFPATYI  206 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~~~~G~~P~~~v  206 (376)
                      ...+.++|+|.+++.++|+|..||+|.|+... ...||.|.+.|..+-+|.+|+
T Consensus       400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~  453 (460)
T KOG3771|consen  400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLF  453 (460)
T ss_pred             ccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccce
Confidence            35788999999999999999999999999754 456999988776665554444

>KOG4575|consensus

Probab=95.76  E-value=0.0068  Score=58.30  Aligned_cols=55  Identities=35%  Similarity=0.780  Sum_probs=47.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|.+.++..++|-|.+||+++++.-.++.||-+..  .+..|+||+|||..+
T Consensus         9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen    9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            4688999999999999999999999999887777777765  467899999999554

>KOG3508|consensus

Probab=95.63  E-value=0.00057  Score=68.95  Aligned_cols=240  Identities=19%  Similarity=0.232  Sum_probs=137.8

Q ss_pred             cccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeC-CeeEEEEEEEcCCCcEEEeceeecchhhhHhh
Q psy10189         56 KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS-DGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  133 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~-~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~  133 (376)
                      ....||+++..|.-++..+.. ...+.++++++..-++.+.++..-. +.+.|.++...-...-.+.+..|.       +
T Consensus        79 p~~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~s~~~~s~vl~gE~~~-------f  151 (932)
T KOG3508|consen   79 PERKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTISKCGTSNVLWGENFL-------F  151 (932)
T ss_pred             chhhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhhhhcccchhccccccc-------c
Confidence            345699999999988888666 7788889999988888877754432 234454443211111111111100       0


Q ss_pred             hhcccccccccccccCCCchhhhhhhcccCCCC-CCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccc
Q psy10189        134 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQ-EPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNME  210 (376)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~  210 (376)
                      +          ..++.+.-....++++-.+... +.+++.+.+|+...+-....++|..+..  .+..|.+         
T Consensus       152 ~----------~lPpl~~~~~~~~~~i~~~~k~~~n~~l~~~~~~~f~~~~~~~d~w~~v~t~~~~e~~~i---------  212 (932)
T KOG3508|consen  152 P----------VLPPLPVVDVLRVRAILPKKKKPTNDEIGFVKGDEFPVHRDLEDGWYWVTTSRTDEGGSI---------  212 (932)
T ss_pred             c----------cCCccchhhhhhhhhhhhhhccCcccccccccchhheecccccceeEEeeccccccCCcc---------
Confidence            0          0011111112334444444443 3468999998877666666777865542  1211111         


Q ss_pred             cCcchhhhccCCCCCCccccccccccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEE
Q psy10189        211 DDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL  289 (376)
Q Consensus       211 ~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~  289 (376)
                            .+...|..+..|..   .....|+|.+|.-.+|...|.. ...+.|++|.+...++.|.+-..-...+.|+.|.
T Consensus       213 ------~~s~~~~~~~~~~~---~~~ar~q~i~i~~~e~y~~~~e~~~~~y~~lc~~lnp~l~~~~kEe~a~aLvr~l~s  283 (932)
T KOG3508|consen  213 ------IASLVGGKSESPDP---RIKARWQSINILPMEAYDELAETGTYNYFLLCPVLNPPLDVSLKEELANALVRVLIS  283 (932)
T ss_pred             ------cccccccccCCCCc---cccccccccccCchHHHHHHHHHhccceeeeecccCCCcchhHHHHHHHHHHHHHHh
Confidence                  11112222222222   4567999999999999998875 3456899998865555554433335566777776


Q ss_pred             EcCCCcEEEeccccCCHHH-HHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        290 RDSSGKFFLWVVKFNSLNE-LVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       290 ~~~~~~~~~~~~~f~sl~~-lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ......|+.+...+..+.. -++||..+....  .+++..|+.+
T Consensus       284 ~~~ak~fl~Dl~~~e~~r~~~idhlifrentl--atka~ep~mk  325 (932)
T KOG3508|consen  284 TGRAKQFLMDLRMKEVLRLGDIDHLIFRENTL--ATKAIEPYMK  325 (932)
T ss_pred             cchHHHHhhcchhHhhhhccchhhhhhhhhhh--hhhhhhHHHH
Confidence            5544466666777777766 678887765544  4455555543

>KOG3697|consensus

Probab=95.41  E-value=0.026  Score=49.21  Aligned_cols=82  Identities=20%  Similarity=0.268  Sum_probs=62.0

Q ss_pred             cccccccccCCHHHHHHHhcCCCCccEEEee-----------------------------------------------cC
Q psy10189         56 KNHDWYYGRITRADAERLLSNKHEGAFLIRV-----------------------------------------------SE   88 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~~~~G~flvR~-----------------------------------------------s~   88 (376)
                      ...+|++|.+++..++..|..  ++.|+++.                                               ..
T Consensus       199 ~k~pp~~g~l~~~~~q~~l~~--~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~~  276 (345)
T KOG3697|consen  199 SKMPPPGGFLDTRLKQRPLAP--DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDET  276 (345)
T ss_pred             ccCCCCCCccchhhhhccCCc--ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhcccc
Confidence            457899999999999887753  33333332                                               23


Q ss_pred             CCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhccccc
Q psy10189         89 SSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVS  140 (376)
Q Consensus        89 ~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~  140 (376)
                      +.+|.|+|.-..++..+|..+. +++|...-.+..|+|+..||+|+..+.+.
T Consensus       277 ~~~gqyvltgl~~~~~khlllv-dpegvvrtkd~~fdsishli~yh~~~~lp  327 (345)
T KOG3697|consen  277 TTPGQYVLTGLQSGQPKHLLLV-DPEGVVRTKDRRFDSISHLINYHMDNHLP  327 (345)
T ss_pred             CCCccEEEecccCCCcceEEEE-CCccceecccchhhHHHHHHHHhhhccCc
Confidence            5578899999999999998876 56676666566699999999999987654

>KOG3725|consensus

Probab=95.13  E-value=0.0063  Score=52.01  Aligned_cols=54  Identities=33%  Similarity=0.557  Sum_probs=48.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec--CCCcceeeeeCCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      ..++++|||.+..+.||++...++|+|.+-  .+.+|..|..+++.|-+|..|++.
T Consensus       318 rkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlEL  373 (375)
T KOG3725|consen  318 RKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLEL  373 (375)
T ss_pred             cceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHh
Confidence            467889999999999999999999999875  467799999999999999998864

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=95.10  E-value=0.021  Score=40.52  Aligned_cols=42  Identities=17%  Similarity=0.317  Sum_probs=26.9

Q ss_pred             CCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccc
Q psy10189         13 AEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus        13 ~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      +..+|.+++|+.++||+..+ .+-|.++ ..|+-||||.+++-.
T Consensus        29 G~kDLpi~~GE~LeVI~~t~-~~kvlCRN~~GKYGYV~~~~L~~   71 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTD-DNKVLCRNSEGKYGYVLRSHLLP   71 (89)
T ss_dssp             -TTB----TT-B-EEEEESS-SSEEEEEETTTEEEEEEGGGS--
T ss_pred             CcccCCcCCCCEEEEEEeCC-CCeEEEeCCCCceeEEEHHHccC
Confidence            45689999999999999745 4555555 889999999999843

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.06  E-value=0.02  Score=48.79  Aligned_cols=38  Identities=13%  Similarity=0.370  Sum_probs=33.2

Q ss_pred             cccCCCEEEEEeccCCccceeec-cCCccceeccccccc
Q psy10189         18 SFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus        18 sf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      ++..|+.|.|++..++.+|.+++ .+|++|||++.|+..
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~   87 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLST   87 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcC
Confidence            78899999999975656899998 689999999999864

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=94.55  E-value=0.046  Score=36.88  Aligned_cols=36  Identities=22%  Similarity=0.659  Sum_probs=29.3

Q ss_pred             cccCCCEEEEEeccCCccceeecc-CCccceecccccc
Q psy10189         18 SFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE   54 (376)
Q Consensus        18 sf~~Gd~i~v~~~~~~~~W~~~~~-~g~~G~vP~nyve   54 (376)
                      .+.+|+.+.++.. .+++|+.++. +|..||+|..++.
T Consensus        26 ~l~~g~~v~i~~~-~~~~W~~v~~~~g~~Gwi~~~~~~   62 (63)
T smart00287       26 TLKKGDKVKVLGV-DGQDWAKITYGSGQRGYVPGYVVN   62 (63)
T ss_pred             EecCCCEEEEEEc-cCCceEEEEcCCCCEEEEEeeeec
Confidence            5789999999986 3337999996 4999999887764

>KOG3775|consensus

Probab=94.52  E-value=0.022  Score=51.54  Aligned_cols=50  Identities=22%  Similarity=0.384  Sum_probs=43.3

Q ss_pred             EEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccc
Q psy10189          4 IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE   54 (376)
Q Consensus         4 ~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve   54 (376)
                      +|++.|.++-++||-+.-||-|-|-.. .++-|.++-  .+|++|.||+.|+-
T Consensus       266 R~~~rFvPRHpDELeLEIgDav~Ve~e-adD~W~~G~NlRTG~~GIFPA~ya~  317 (482)
T KOG3775|consen  266 RAVFRFVPRHPDELELEIGDAVLVEAE-ADDFWFEGFNLRTGERGIFPAFYAH  317 (482)
T ss_pred             hhhhhccCCCcceeeeecCCeeEeeec-ccchhhccccccccccccccceeEE
Confidence            578899999999999999999977654 667888887  58999999999964

>KOG0199|consensus

Probab=94.33  E-value=0.045  Score=54.20  Aligned_cols=52  Identities=13%  Similarity=0.263  Sum_probs=43.7

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE   54 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve   54 (376)
                      ++|..+|+....+-|-|.+||.|.||+.....-||++.  .+++.|.||.+-|-
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            45666777888999999999999999986666799996  58899999988764

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=93.62  E-value=0.098  Score=37.19  Aligned_cols=45  Identities=13%  Similarity=0.238  Sum_probs=29.9

Q ss_pred             CCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeeccccccccc
Q psy10189        167 EPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNMED  211 (376)
Q Consensus       167 ~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  211 (376)
                      ...+|.+++|+.+.|+...+++=|.|+. .|+-|+||.+++.+.+.
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d~   74 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLDG   74 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS-----
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCCC
Confidence            3568999999999999999999888886 79999999999977643

>KOG1856|consensus

Probab=93.26  E-value=0.14  Score=53.27  Aligned_cols=80  Identities=24%  Similarity=0.405  Sum_probs=59.9

Q ss_pred             cccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCee-EEEEEEEcCC-C------cEEEeccccCCHH
Q psy10189        236 NHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV-QHFKVLRDSS-G------KFFLWVVKFNSLN  307 (376)
Q Consensus       236 ~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v-~h~~I~~~~~-~------~~~~~~~~f~sl~  307 (376)
                      ..|.| .+++-++|+.+|.....|.++||+|+......+++++....| .|+.|....+ +      .+.+++..|..|.
T Consensus      1107 ~HP~F-~n~n~eQAe~yL~~~d~ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLD 1185 (1299)
T KOG1856|consen 1107 AHPLF-KNLNAEQAEAYLSDMDQGELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLD 1185 (1299)
T ss_pred             cCccc-cCCCHHHHHHHHHhcccccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHH
Confidence            34554 468999999999988899999999977667788999886665 5666653222 2      2344578999999


Q ss_pred             HHHHHHhhC
Q psy10189        308 ELVEYHRTA  316 (376)
Q Consensus       308 ~lv~~y~~~  316 (376)
                      ++|.-|-.+
T Consensus      1186 EiI~r~vqp 1194 (1299)
T KOG1856|consen 1186 EIIARYVQP 1194 (1299)
T ss_pred             HHHHHHHHH
Confidence            999987553

>KOG0040|consensus

Probab=93.02  E-value=0.0056  Score=64.32  Aligned_cols=58  Identities=33%  Similarity=0.800  Sum_probs=53.9

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++.|+|+|...++.+.++++||+++++......||.++++.+.|++|+.||+.+..
T Consensus       968 ~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~ 1025 (2399)
T KOG0040|consen  968 KECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDP 1025 (2399)
T ss_pred             HHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhcc
Confidence            3678899999999999999999999999999999999999999999999999988754

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=92.14  E-value=0.18  Score=32.97  Aligned_cols=35  Identities=11%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             ccccCCCEEEEEeccCCccceeeccCCccceeccccc
Q psy10189         17 LSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI   53 (376)
Q Consensus        17 Lsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyv   53 (376)
                      ..+.+|..+.|++.  ..+|..++.+|..|||+.+.|
T Consensus        19 ~~l~~g~~v~v~~~--~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIEC--RGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEc--cCCeEEEEECCeEEeEEeeec
Confidence            46788999999864  447999999999999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=91.82  E-value=0.28  Score=31.92  Aligned_cols=37  Identities=19%  Similarity=0.491  Sum_probs=29.5

Q ss_pred             eeccCCCEEEEEecCCCc-ceee-eeCCeeeeeeccccc
Q psy10189        171 LEFRRGDVITVTDRSDQH-WWHG-EIGARKGLFPATYIL  207 (376)
Q Consensus       171 L~~~~g~~i~v~~~~~~~-w~~~-~~~~~~G~~P~~~v~  207 (376)
                      -.+..|+.+.++....++ |... ...+..||++..||.
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            346789999999887665 9999 468889999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG0040|consensus

Probab=90.34  E-value=0.013  Score=61.84  Aligned_cols=54  Identities=24%  Similarity=0.663  Sum_probs=47.3

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +.|+|+|...++.|.+.++||++.++.. ....||.++++...|+||+.||+...
T Consensus       971 v~alyd~q~kSprev~mKkgDvltll~s-~nkdwwkve~~d~qg~vpa~yvk~~~ 1024 (2399)
T KOG0040|consen  971 VLALYDYQEKSPREVTMKKGDVLTLLNS-INKDWWKVEVNDRQGFVPAAYVKRLD 1024 (2399)
T ss_pred             HHHHHHHHhcCHHHHHHhhhhHHHHHhh-cccccccchhhhhcCcchHHHHHHhc
Confidence            4689999999999999999999988875 44569999999999999999998543

>KOG0199|consensus

Probab=90.05  E-value=0.29  Score=48.79  Aligned_cols=48  Identities=29%  Similarity=0.553  Sum_probs=39.0

Q ss_pred             cccCCCCCCCceeccCCCEEEEEecCC-Ccceeeee--CCeeeeeeccccc
Q psy10189        160 LYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEI--GARKGLFPATYIL  207 (376)
Q Consensus       160 l~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~--~~~~G~~P~~~v~  207 (376)
                      .-++....++.|.+.+||.|+|++... +.||.|..  +++.|.||.+-|.
T Consensus       380 ~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  380 RETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            345556678899999999999998765 45899953  7899999998886

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=89.53  E-value=0.35  Score=41.05  Aligned_cols=38  Identities=18%  Similarity=0.445  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEeccCCccceeec-cCCccceeccccccc
Q psy10189         18 SFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus        18 sf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      ++++||.+.|+......+|.+++ .+|+.||||+.++..
T Consensus        49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~   87 (205)
T COG3103          49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS   87 (205)
T ss_pred             EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence            78999999999986666899999 678999999998763

>KOG3565|consensus

Probab=89.38  E-value=0.14  Score=51.20  Aligned_cols=58  Identities=26%  Similarity=0.540  Sum_probs=48.9

Q ss_pred             chhhhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeee--eCCeeeeeeccccccc
Q psy10189        152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGE--IGARKGLFPATYILNM  209 (376)
Q Consensus       152 ~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~--~~~~~G~~P~~~v~~~  209 (376)
                      |....+.|+|.|.++.++++++.+|+++.+++.. +++|-.++  .++..|++|.+|+...
T Consensus       576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~  636 (640)
T KOG3565|consen  576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT  636 (640)
T ss_pred             CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence            4446788999999999999999999999998764 56788888  5788999999998764

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=88.70  E-value=0.75  Score=30.75  Aligned_cols=36  Identities=22%  Similarity=0.480  Sum_probs=29.2

Q ss_pred             eeccCCCEEEEEecCCCcceeeeeC-Ceeeeeecccc
Q psy10189        171 LEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI  206 (376)
Q Consensus       171 L~~~~g~~i~v~~~~~~~w~~~~~~-~~~G~~P~~~v  206 (376)
                      -.+..|+.+.++...+++|...+.. |..||++..++
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            3467899999998766689999875 89999987665

>KOG4566|consensus

Probab=87.84  E-value=0.92  Score=39.91  Aligned_cols=80  Identities=28%  Similarity=0.428  Sum_probs=59.6

Q ss_pred             cccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEE------ece--eecch
Q psy10189         56 KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL------WVV--KFNSL  127 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~------~~~--~f~sl  127 (376)
                      ....||++.++..+|+..+...+.|.|++|+|...+-.+.|+++.....+..+|.... +.+..      ...  .|...
T Consensus        50 ~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~-~sfr~ds~~~~~~pl~~~e~~  128 (258)
T KOG4566|consen   50 DSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQD-SSFRLDSSHRHTPPLISFEDV  128 (258)
T ss_pred             ccCCcccccccchhHHHhhcCCCccceeeecCcCccccceeEeeeccCCCCccccccc-cceecccccccCCCcccChhH
Confidence            3456899999999999999889999999999988888899999887776666665443 33332      112  36667


Q ss_pred             hhhHhhhhc
Q psy10189        128 NELVEYHRT  136 (376)
Q Consensus       128 ~~li~~~~~  136 (376)
                      ..++++|+.
T Consensus       129 ~~~~~~y~~  137 (258)
T KOG4566|consen  129 EVLIHHYRQ  137 (258)
T ss_pred             HHHHHhhhh
Confidence            777777733

>KOG3812|consensus

Probab=87.17  E-value=0.41  Score=43.08  Aligned_cols=48  Identities=19%  Similarity=0.430  Sum_probs=35.8

Q ss_pred             EEEeecCCCCCCC-------CccccCCCEEEEEeccCCccceeec---cCCccceeccc
Q psy10189          3 AIAKHDFNATAED-------ELSFRKSQVLKILNMEDDMNWYRAE---LDGKEGLIPSN   51 (376)
Q Consensus         3 ~~al~~y~~~~~~-------eLsf~~Gd~i~v~~~~~~~~W~~~~---~~g~~G~vP~n   51 (376)
                      +.+.-+|.+.-++       -++|...|+|.|-++ ....||.|+   .....||+|+.
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeK-ynnDWWIGRlVkeg~e~gFiPsp  118 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEK-YNNDWWIGRLVKEGCEIGFIPSP  118 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhh-cccchhHHHHhhcCCccccccch
Confidence            4556677764443       379999999998876 556799988   35678999973

>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface

Probab=86.83  E-value=4.1  Score=28.27  Aligned_cols=43  Identities=16%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             cccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeC
Q psy10189        238 DWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCS  280 (376)
Q Consensus       238 ~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~  280 (376)
                      |-|.--++=+|+.+.|+.  .+.|+|+.|-|.++-|.+++-....
T Consensus         3 pgY~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~   47 (86)
T PF02762_consen    3 PGYMAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQ   47 (86)
T ss_dssp             TTBETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEET
T ss_pred             CceeEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcC
Confidence            446677899999999983  5779999999999999999987663

The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....

>KOG0162|consensus

Probab=86.32  E-value=0.53  Score=46.77  Aligned_cols=27  Identities=33%  Similarity=0.539  Sum_probs=24.9

Q ss_pred             ceEEEeccCCCCCCCCccccccceeee
Q psy10189        334 CLVQALYDFTPQEPGELEFRRDLKIKR  360 (376)
Q Consensus       334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~  360 (376)
                      .++.|+|+|.+++++||+|.+|++|.-
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei 1078 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEI 1078 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEE
Confidence            668999999999999999999999875

>KOG3705|consensus

Probab=86.30  E-value=0.83  Score=42.16  Aligned_cols=52  Identities=15%  Similarity=0.214  Sum_probs=39.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve   54 (376)
                      ..+|+++..+++.+||.++.||.|-|-.- -=+|+-.|.  ..+++|+||+-=|+
T Consensus       511 n~ivi~aH~prt~~ei~l~vGD~vgvAGN-HWdGySKG~Nr~t~~~GlfPSyKvr  564 (580)
T KOG3705|consen  511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGN-HWDGYSKGTNRQTYKEGLFPSYKVR  564 (580)
T ss_pred             ceEEEEecCCCcccccCcccCCeeeeccc-ccccccccccccccccCCCccceee
Confidence            46899999999999999999999987541 222344444  46789999985544

>KOG2856|consensus

Probab=86.08  E-value=0.4  Score=43.60  Aligned_cols=28  Identities=36%  Similarity=0.586  Sum_probs=24.9

Q ss_pred             ceEEEeccCCCCCCCCccccccceeeee
Q psy10189        334 CLVQALYDFTPQEPGELEFRRDLKIKRR  361 (376)
Q Consensus       334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~  361 (376)
                      ..++|||||.+...+||+|++|+.|.+.
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl  442 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKL  442 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhc
Confidence            5688999999999999999999988753

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.39  E-value=1.2  Score=38.01  Aligned_cols=41  Identities=10%  Similarity=0.129  Sum_probs=33.5

Q ss_pred             eeccCCCEEEEEecCC-Ccceeeee-CCeeeeeeccccccccc
Q psy10189        171 LEFRRGDVITVTDRSD-QHWWHGEI-GARKGLFPATYILNMED  211 (376)
Q Consensus       171 L~~~~g~~i~v~~~~~-~~w~~~~~-~~~~G~~P~~~v~~~~~  211 (376)
                      -.+.+|+.++|++..+ ++|...+. +|+.||++..|+...++
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p~   90 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTPS   90 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCcc
Confidence            3577899999998765 67999984 78999999999976543

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=83.42  E-value=1.1  Score=43.07  Aligned_cols=36  Identities=19%  Similarity=0.535  Sum_probs=30.9

Q ss_pred             cccCCCEEEEEeccCCccceeecc-CCccceecccccc
Q psy10189         18 SFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE   54 (376)
Q Consensus        18 sf~~Gd~i~v~~~~~~~~W~~~~~-~g~~G~vP~nyve   54 (376)
                      ++.+|+.|.|+.. .+.+|++.+. +|++|||-+.||.
T Consensus       104 sl~~G~~V~Vl~~-~~ngW~kI~~~~GktGwV~~~YLs  140 (481)
T PRK13914        104 SIKGGTKVTVETT-ESNGWHKITYNDGKTGFVNGKYLT  140 (481)
T ss_pred             eecCCCEEEEeec-ccCCeEEEEcCCCCEEEEeccccc
Confidence            7899999999852 4557999997 5999999999987

>KOG3705|consensus

Probab=82.24  E-value=0.82  Score=42.21  Aligned_cols=54  Identities=20%  Similarity=0.342  Sum_probs=39.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~  208 (376)
                      ...+++++..++..+|+.++.||.+.|-...=+|.-.|..  .++.|+||+--|+.
T Consensus       510 Hn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  510 HNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             cceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            3578899999999999999999999886433233334433  47788888866654

>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B

Probab=81.96  E-value=2.1  Score=27.79  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=25.4

Q ss_pred             ccccCCCEEEEEeccCCccceeeccCCccceecc
Q psy10189         17 LSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPS   50 (376)
Q Consensus        17 Lsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~   50 (376)
                      -.+..|+-|.|+....|..|.++....-.|||++
T Consensus        21 s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s   54 (54)
T PF12913_consen   21 SALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS   54 (54)
T ss_dssp             EEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred             cccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence            3678899999999877778999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	376
1gri_A	217	Grb2 Length = 217		6e-76
1gri_A	217	Grb2 Length = 217		2e-56
1bmb_A	123	Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-9		1e-40
1bmb_A	123	Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-9		1e-40
1bm2_A	117	Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acet		2e-38
1bm2_A	117	Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acet		2e-38
1fyr_A	114	Dimer Formation Through Domain Swapping In The Crys		3e-37
1fyr_A	114	Dimer Formation Through Domain Swapping In The Crys		3e-37
3n84_A	112	Crystal Structure Of The Grb2 Sh2 Domain In Complex		4e-36
3n84_A	112	Crystal Structure Of The Grb2 Sh2 Domain In Complex		4e-36
3ove_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		4e-36
3ove_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		4e-36
3imd_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		4e-36
3imd_A	117	Crystal Structure Of The Grb2 Sh2 Domain In Complex		4e-36
1fhs_A	112	The Three-Dimensional Solution Structure Of The Src		5e-36
1fhs_A	112	The Three-Dimensional Solution Structure Of The Src		5e-36
2h46_E	116	Native Domain-Swapped Dimer Crystal Structure Of Th		8e-36
2h46_E	116	Native Domain-Swapped Dimer Crystal Structure Of Th		8e-36
2aoa_A	99	Crystal Structures Of A High-affinity Macrocyclic P		5e-34
2aoa_A	99	Crystal Structures Of A High-affinity Macrocyclic P		5e-34
1tze_E	98	Signal Transduction Adaptor Growth Factor, Grb2 Sh2		5e-34
1tze_E	98	Signal Transduction Adaptor Growth Factor, Grb2 Sh2		5e-34
3mxc_A	101	Structures Of Grb2-Sh2 Domain And Aicd Peptide Comp		6e-34
3mxc_A	101	Structures Of Grb2-Sh2 Domain And Aicd Peptide Comp		6e-34
1x0n_A	104	Nmr Structure Of Growth Factor Receptor Binding Pro		1e-33
1x0n_A	104	Nmr Structure Of Growth Factor Receptor Binding Pro		1e-33
1zfp_E	98	Growth Factor Receptor Binding Protein Sh2 Domain C		2e-33
1zfp_E	98	Growth Factor Receptor Binding Protein Sh2 Domain C		2e-33
1cj1_A	96	Growth Factor Receptor Binding Protein Sh2 Domain (		7e-33
1cj1_A	96	Growth Factor Receptor Binding Protein Sh2 Domain (		7e-33
1ghu_A	107	Nmr Solution Structure Of Growth Factor Receptor-Bo		9e-33
1ghu_A	107	Nmr Solution Structure Of Growth Factor Receptor-Bo		9e-33
1jyq_A	96	Xray Structure Of Grb2 Sh2 Domain Complexed With A		3e-32
1jyq_A	96	Xray Structure Of Grb2 Sh2 Domain Complexed With A		3e-32
2a36_A	59	Solution Structure Of The N-Terminal Sh3 Domain Of		1e-26
2a36_A	59	Solution Structure Of The N-Terminal Sh3 Domain Of		3e-13
2a37_A	59	Solution Structure Of The T22g Mutant Of N-Terminal		2e-26
2a37_A	59	Solution Structure Of The T22g Mutant Of N-Terminal		4e-14
1r1p_A	100	Structural Basis For Differential Recognition Of Ty		1e-24
1r1p_A	100	Structural Basis For Differential Recognition Of Ty		1e-24
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-24
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		5e-18
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		8e-22
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-17
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		8e-22
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		6e-17
2abl_A	163	Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine K		8e-22
2abl_A	163	Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine K		7e-17
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		8e-22
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-17
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-19
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-16
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		3e-19
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-16
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		3e-19
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-16
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-19
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		2e-16
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		1e-18
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		2e-09
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-18
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		7e-16
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		4e-18
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		4e-15
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		1e-17
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		1e-14
2dvj_A	230	Phosphorylated Crk-Ii Length = 230		1e-16
2dvj_A	230	Phosphorylated Crk-Ii Length = 230		9e-09
1aze_A	56	Nmr Structure Of The Complex Between The C32s-Y7v M		1e-16
1aze_A	56	Nmr Structure Of The Complex Between The C32s-Y7v M		2e-07
2eyz_A	304	Ct10-Regulated Kinase Isoform Ii Length = 304		3e-16
2eyz_A	304	Ct10-Regulated Kinase Isoform Ii Length = 304		6e-08
1lck_A	175	Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine K		4e-16
1lck_A	175	Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine K		3e-14
4d8k_A	175	Crystal Structure Of A Sh3-Sh2 Domains Of A Lymphoc		4e-16
4d8k_A	175	Crystal Structure Of A Sh3-Sh2 Domains Of A Lymphoc		3e-14
2eyy_A	204	Ct10-Regulated Kinase Isoform I Length = 204		4e-16
2eyy_A	204	Ct10-Regulated Kinase Isoform I Length = 204		4e-08
1x27_A	167	Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding S		5e-16
1x27_A	167	Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding S		3e-14
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		6e-15
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-14
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		7e-15
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		7e-14
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		9e-15
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		1e-14
3t04_A	123	Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN C		2e-14
3t04_A	123	Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN C		2e-14
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		7e-14
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		8e-14
2lqn_A	303	Solution Structure Of Crkl Length = 303		1e-13
2lqn_A	303	Solution Structure Of Crkl Length = 303		2e-07
2lqw_A	303	Solution Structure Of Phosphorylated Crkl Length =		1e-13
2lqw_A	303	Solution Structure Of Phosphorylated Crkl Length =		2e-07
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		1e-13
2shp_A	525	Tyrosine Phosphatase Shp-2 Length = 525		2e-13
2dly_A	121	Solution Structure Of The Sh2 Domain Of Murine Fyn-		2e-13
2dly_A	121	Solution Structure Of The Sh2 Domain Of Murine Fyn-		2e-13
2ecd_A	119	Solution Structure Of The Human Abl2 Sh2 Domain Len		7e-13
2ecd_A	119	Solution Structure Of The Human Abl2 Sh2 Domain Len		7e-13
2ci9_A	102	Nck1 Sh2-Domain In Complex With A Dodecaphosphopept		9e-13
2ci9_A	102	Nck1 Sh2-Domain In Complex With A Dodecaphosphopept		9e-13
2ci8_A	99	Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomple		9e-13
2ci8_A	99	Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomple		9e-13
3k2m_A	112	Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN CO		1e-12
3k2m_A	112	Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN CO		1e-12
1ab2_A	109	Three-Dimensional Solution Structure Of The Src Hom		1e-12
1ab2_A	109	Three-Dimensional Solution Structure Of The Src Hom		1e-12
2vwf_A	58	Grb2 Sh3c (2) Length = 58		5e-12
2vvk_A	56	Grb2 Sh3c (1) Length = 56		6e-12
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		6e-12
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		8e-12
1rja_A	100	Solution Structure And Backbone Dynamics Of The Non		8e-12
1rja_A	100	Solution Structure And Backbone Dynamics Of The Non		8e-12
3ps5_A	595	Crystal Structure Of The Full-Length Human Protein		9e-12
2b3o_A	532	Crystal Structure Of Human Tyrosine Phosphatase Shp		1e-11
2cia_A	102	Human Nck2 Sh2-Domain In Complex With A Decaphospho		3e-11
2cia_A	102	Human Nck2 Sh2-Domain In Complex With A Decaphospho		3e-11
1z3k_A	98	Structural Insight Into The Binding Diversity Betwe		3e-11
1z3k_A	98	Structural Insight Into The Binding Diversity Betwe		3e-11
1f1w_A	104	Src Sh2 Thref1trp Mutant Complexed With The Phospho		5e-11
1f1w_A	104	Src Sh2 Thref1trp Mutant Complexed With The Phospho		5e-11
1a1a_A	107	C-Src (Sh2 Domain With C188a Mutation) Complexed Wi		6e-11
1a1a_A	107	C-Src (Sh2 Domain With C188a Mutation) Complexed Wi		6e-11
3eac_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		6e-11
3eac_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		6e-11
1shd_A	107	Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein In		2e-10
1shd_A	107	Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein In		2e-10
1o4c_A	108	Crystal Structure Of Sh2 In Complex With Phosphate.		2e-10
1o4c_A	108	Crystal Structure Of Sh2 In Complex With Phosphate.		2e-10
1o41_A	108	Crystal Structure Of Sh2 In Complex With Ru78300. L		2e-10
1o41_A	108	Crystal Structure Of Sh2 In Complex With Ru78300. L		2e-10
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		7e-10
1is0_A	106	Crystal Structure Of A Complex Of The Src Sh2 Domai		9e-10
1is0_A	106	Crystal Structure Of A Complex Of The Src Sh2 Domai		9e-10
1sha_A	104	Crystal Structure Of The Phosphotyrosine Recognitio		1e-09
1sha_A	104	Crystal Structure Of The Phosphotyrosine Recognitio		1e-09
1nzl_A	103	Crystal Structure Of Src Sh2 Domain Bound To Doubly		1e-09
1nzl_A	103	Crystal Structure Of Src Sh2 Domain Bound To Doubly		1e-09
1skj_A	113	Cocrystal Structure Of Urea-Substituted Phosphopept		1e-09
1skj_A	113	Cocrystal Structure Of Urea-Substituted Phosphopept		1e-09
1p13_A	102	Crystal Structure Of The Src Sh2 Domain Complexed W		1e-09
1p13_A	102	Crystal Structure Of The Src Sh2 Domain Complexed W		1e-09
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		1e-09
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		1e-09
3eaz_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		1e-09
3eaz_A	106	Crystal Structure Of Sh2 Domain Of Human Csk (Carbo		1e-09
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		1e-09
4f59_A	112	Triple Mutant Src Sh2 Domain Length = 112		2e-09
4f59_A	112	Triple Mutant Src Sh2 Domain Length = 112		2e-09
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		2e-09
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		1e-08
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		2e-09
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		2e-09
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		3e-08
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		2e-09
1kc2_A	103	Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c		3e-09
1kc2_A	103	Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c		3e-09
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		3e-09
1x2k_A	68	Solution Structure Of The Sh3 Domain Of Human Osteo		4e-09
2ew3_A	68	Solution Structure Of The Sh3 Domain Of Human Sh3gl		5e-09
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		5e-09
1zlm_A	58	Crystal Structure Of The Sh3 Domain Of Human Osteoc		5e-09
4fl2_A	636	Structural And Biophysical Characterization Of The		6e-09
1bkl_A	113	Self-Associated Apo Src Sh2 Domain Length = 113		6e-09
1bkl_A	113	Self-Associated Apo Src Sh2 Domain Length = 113		6e-09
1bkm_A	113	Cocrystal Structure Of D-Amino Acid Substituted Pho		7e-09
1bkm_A	113	Cocrystal Structure Of D-Amino Acid Substituted Pho		7e-09
1csk_A	71	The Crystal Structure Of Human Csksh3: Structural D		7e-09
1jeg_A	83	Solution Structure Of The Sh3 Domain From C-Termina		7e-09
2f2x_A	62	Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62		1e-08
1aot_F	106	Nmr Structure Of The Fyn Sh2 Domain Complexed With		1e-08
1aot_F	106	Nmr Structure Of The Fyn Sh2 Domain Complexed With		1e-08
2lnw_A	122	Identification And Structural Basis For A Novel Int		1e-08
2lnw_A	122	Identification And Structural Basis For A Novel Int		1e-08
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		2e-08
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		2e-08
1qkw_A	62	Alpha-Spectrin Src Homology 3 Domain, N47g Mutant I		3e-08
4fl3_A	635	Structural And Biophysical Characterization Of The		3e-08
1lcj_A	109	Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosi		4e-08
1lcj_A	109	Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosi		4e-08
1lkk_A	105	Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex		4e-08
1lkk_A	105	Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex		4e-08
1lkl_A	104	Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex		4e-08
1lkl_A	104	Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex		4e-08
1bhf_A	108	P56lck Sh2 Domain Inhibitor Complex Length = 108		4e-08
1bhf_A	108	P56lck Sh2 Domain Inhibitor Complex Length = 108		4e-08
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		4e-08
1bhh_B	103	Free P56lck Sh2 Domain Length = 103		4e-08
1bhh_B	103	Free P56lck Sh2 Domain Length = 103		4e-08
2f2w_A	62	Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62		5e-08
1uue_A	62	A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length =		5e-08
3tl0_A	109	Structure Of Shp2 N-Sh2 Domain In Complex With Rlnp		5e-08
3tl0_A	109	Structure Of Shp2 N-Sh2 Domain In Complex With Rlnp		5e-08
3thk_A	73	Structure Of Sh3 Chimera With A Type Ii Ligand Link		5e-08
4fbn_A	246	Insights Into Structural Integration Of The Plcgamm		6e-08
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		6e-08
1cwd_L	98	Human P56lck Tyrosine Kinase Complexed With Phospho		6e-08
1cwd_L	98	Human P56lck Tyrosine Kinase Complexed With Phospho		6e-08
1bk2_A	57	A-Spectrin Sh3 Domain D48g Mutant Length = 57		7e-08
1a81_A	254	Crystal Structure Of The Tandem Sh2 Domain Of The S		7e-08
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		7e-08
1ijr_A	104	Crystal Structure Of Lck Sh2 Complexed With Nonpept		8e-08
1ijr_A	104	Crystal Structure Of Lck Sh2 Complexed With Nonpept		8e-08
3m0s_A	57	Crystal Structure Of The R21d Mutant Of Alpha-Spect		8e-08
1aya_A	101	Crystal Structures Of Peptide Complexes Of The Amin		8e-08
1aya_A	101	Crystal Structures Of Peptide Complexes Of The Amin		8e-08
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		8e-08
4ey0_A	246	Structure Of Tandem Sh2 Domains From Plcgamma1 Leng		8e-08
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		8e-08
3m0p_A	62	Crystal Structure Of The R21d Mutant Of Alpha-Spect		9e-08
2cdt_A	62	Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62		9e-08
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		9e-08
3hck_A	107	Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domai		1e-07
3hck_A	107	Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domai		1e-07
1fbz_A	104	Structure-Based Design Of A Novel, Osteoclast-Selec		1e-07
1fbz_A	104	Structure-Based Design Of A Novel, Osteoclast-Selec		1e-07
1qkx_A	62	Alpha-Spectrin Src Homology 3 Domain, N47a Mutant I		1e-07
2gsb_A	119	Solution Structure Of The Second Sh2 Domain Of Huma		1e-07
2gsb_A	119	Solution Structure Of The Second Sh2 Domain Of Huma		1e-07
2lct_A	107	Solution Structure Of The Vav1 Sh2 Domain Complexed		1e-07
2lct_A	107	Solution Structure Of The Vav1 Sh2 Domain Complexed		1e-07
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		1e-07
2crh_A	138	Solution Structure Of The Sh2 Domain Of Human Proto		1e-07
2lj3_A	63	Pfbd: High-Throughput Strategy Of Backbone Fold Det		1e-07
1m8m_A	62	Solid-State Mas Nmr Structure Of The A-Spectrin Sh3		1e-07
2cs0_A	119	Solution Structure Of The Sh2 Domain Of Human Hsh2d		1e-07
2cs0_A	119	Solution Structure Of The Sh2 Domain Of Human Hsh2d		1e-07
1pwt_A	61	Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Tw		2e-07
2dlz_A	118	Solution Structure Of The Sh2 Domain Of Human Prote		2e-07
2dlz_A	118	Solution Structure Of The Sh2 Domain Of Human Prote		2e-07
1hd3_A	62	A-Spectrin Sh3 Domain F52y Mutant Length = 62		2e-07
1e6g_A	62	A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l		2e-07
3ngp_A	62	High Resolution Structure Of Alpha-Spectrin Sh3 Dom		2e-07
2y3a_B	302	Crystal Structure Of P110beta In Complex With Icsh2		2e-07
2y3a_B	302	Crystal Structure Of P110beta In Complex With Icsh2		2e-07
3gqi_B	226	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-07
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		2e-07
2f2v_A	62	Alpha-Spectrin Sh3 Domain A56g Mutant Length = 62		2e-07
1neg_A	83	Crystal Structure Analysis Of N-And C-Terminal Labe		2e-07
1e7o_A	62	A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l		3e-07
1uhf_A	69	Solution Structure Of The Third Sh3 Domain Of Human		4e-07
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		4e-07
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		9e-06
2kk6_A	116	Solution Structure Of Sh2 Domain Of Proto-Oncogene		4e-07
2kk6_A	116	Solution Structure Of Sh2 Domain Of Proto-Oncogene		4e-07
1m61_A	259	Crystal Structure Of The Apo Sh2 Domains Of Zap-70		5e-07
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		5e-07
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		5e-07
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		5e-07
2oq1_A	254	Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Pept		6e-07
2krn_A	60	High Resolution Structure Of The Second Sh3 Domain		6e-07
1e6h_A	62	A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutant		6e-07
1ju5_A	109	Ternary Complex Of An Crk Sh2 Domain, Crk-Derived P		6e-07
1ju5_A	109	Ternary Complex Of An Crk Sh2 Domain, Crk-Derived P		6e-07
2eyv_A	124	Sh2 Domain Of Ct10-Regulated Kinase Length = 124		7e-07
2eyv_A	124	Sh2 Domain Of Ct10-Regulated Kinase Length = 124		7e-07
1h8k_A	62	A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l		8e-07
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		9e-07
3i9q_A	57	Crystal Structure Of The Triple Mutant S19g-P20d-R2		1e-06
2eo3_A	111	Solution Structure Of The Sh2 Domain From Human Crk		1e-06
2eo3_A	111	Solution Structure Of The Sh2 Domain From Human Crk		1e-06
1blj_A	114	Nmr Ensemble Of Blk Sh2 Domain, 20 Structures Lengt		1e-06
1blj_A	114	Nmr Ensemble Of Blk Sh2 Domain, 20 Structures Lengt		1e-06
1ynz_A	58	Sh3 Domain Of Yeast Pin3 Length = 58		2e-06
2aug_A	126	Crystal Structure Of The Grb14 Sh2 Domain Length =		2e-06
2aug_A	126	Crystal Structure Of The Grb14 Sh2 Domain Length =		2e-06
1mw4_A	120	Solution Structure Of The Human Grb7-Sh2 Domain In		2e-06
1mw4_A	120	Solution Structure Of The Human Grb7-Sh2 Domain In		2e-06
2djq_A	68	The Solution Structure Of The First Sh3 Domain Of M		2e-06
3pqz_A	117	Grb7 Sh2 With Peptide Length = 117		2e-06
3pqz_A	117	Grb7 Sh2 With Peptide Length = 117		2e-06
2ysq_A	81	Solution Structure Of The Sh3 Domain From Rho Guani		2e-06
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		3e-06
2yuo_A	78	Solution Structure Of The Sh3 Domain Of Mouse Run A		3e-06
3u23_A	65	Atomic Resolution Crystal Structure Of The 2nd Sh3		3e-06
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		3e-06
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		6e-05
4esr_A	69	Molecular And Structural Characterization Of The Sh		4e-06
2kr3_A	70	Solution Structure Of Sha-D Length = 70		4e-06
4iim_A	70	Crystal Structure Of The Second Sh3 Domain Of Itsn1		4e-06
2l3s_A	163	Structure Of The Autoinhibited Crk Length = 163		4e-06
2l3s_A	163	Structure Of The Autoinhibited Crk Length = 163		3e-05
2dx0_A	138	Crystal Structure Of The N-Terminal Sh2 Domain Of M		4e-06
2dx0_A	138	Crystal Structure Of The N-Terminal Sh2 Domain Of M		4e-06
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		6e-06
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		8e-05
2epd_A	76	Solution Structure Of Sh3 Domain In Rho-Gtpase-Acti		6e-06
2dm1_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		7e-06
2dl3_A	68	Solution Structure Of The First Sh3 Domain Of Human		7e-06
2ysx_A	119	Solution Structure Of The Human Ship Sh2 Domain Len		7e-06
2ysx_A	119	Solution Structure Of The Human Ship Sh2 Domain Len		7e-06
1fu5_A	111	Nmr Structure Of The N-Sh2 Domain Of The P85 Subuni		7e-06
1fu5_A	111	Nmr Structure Of The N-Sh2 Domain Of The P85 Subuni		7e-06
1oo3_A	111	P395s Mutant Of The P85 Regulatory Subunit Of The N		8e-06
1oo3_A	111	P395s Mutant Of The P85 Regulatory Subunit Of The N		8e-06
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		8e-06
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		1e-04
2fei_A	65	Solution Structure Of The Second Sh3 Domain Of Huma		1e-05
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		1e-05
3nmz_D	116	Crytal Structure Of Apc Complexed With Asef Length		1e-05
2iug_A	120	Crystal Structure Of The Pi3-Kinase P85 N-Terminal		1e-05
2iug_A	120	Crystal Structure Of The Pi3-Kinase P85 N-Terminal		1e-05
2pz1_A	466	Crystal Structure Of Auto-Inhibited Asef Length = 4		1e-05
3hhm_B	373	Crystal Structure Of P110alpha H1047r Mutant In Com		1e-05
3hhm_B	373	Crystal Structure Of P110alpha H1047r Mutant In Com		1e-05
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		1e-05
1x6c_A	118	Solution Structures Of The Sh2 Domain Of Human Prot		1e-05
1x6c_A	118	Solution Structures Of The Sh2 Domain Of Human Prot		1e-05
2eob_A	124	Solution Structure Of The Second Sh2 Domain From Ra		1e-05
2eob_A	124	Solution Structure Of The Second Sh2 Domain From Ra		1e-05
3qwy_A	308	Ced-2 Length = 308		1e-05
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		1e-05
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		1e-05
2dx1_A	482	Crystal Structure Of Rhogef Protein Asef Length = 4		1e-05
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		2e-05
2dyb_A	341	The Crystal Structure Of Human P40(Phox) Length = 3		2e-05
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		2e-05
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		2e-05
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		2e-05
2yuq_A	85	Solution Structure Of The Sh3 Domain Of Human Tyros		2e-05
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		2e-05
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		3e-05
1tce_A	107	Solution Nmr Structure Of The Shc Sh2 Domain Comple		3e-05
1tce_A	107	Solution Nmr Structure Of The Shc Sh2 Domain Comple		3e-05
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		3e-05
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		6e-04
2rmo_A	70	Solution Structure Of Alpha-Spectrin_sh3-Bergerac F		3e-05
2ed1_A	76	Solution Structure Of The Sh3 Domain Of 130 Kda Pho		3e-05
2fci_A	105	Structural Basis For The Requirement Of Two Phospho		3e-05
2fci_A	105	Structural Basis For The Requirement Of Two Phospho		3e-05
1hsq_A	71	Solution Structure Of The Sh3 Domain Of Phospholipa		3e-05
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		4e-05
2dl7_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		4e-05
1jwo_A	97	Crystal Structure Analysis Of The Sh2 Domain Of The		4e-05
1jwo_A	97	Crystal Structure Analysis Of The Sh2 Domain Of The		4e-05
2rqt_A	61	Solution Structure Of The Human Ddef1 Sh3 Domain Le		4e-05
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		4e-05
2pna_A	104	Structure Of An Sh2 Domain Of The P85 Alpha Subunit		4e-05
2pna_A	104	Structure Of An Sh2 Domain Of The P85 Alpha Subunit		4e-05
3qwx_X	174	Ced-2 1-174 Length = 174		4e-05
2rd0_B	279	Structure Of A Human P110alpha/p85alpha Complex Len		4e-05
2rd0_B	279	Structure Of A Human P110alpha/p85alpha Complex Len		4e-05
3m7f_A	108	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		4e-05
3m7f_A	108	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		4e-05
2jte_A	64	Third Sh3 Domain Of Cd2ap Length = 64		4e-05
1mil_A	104	Transforming Protein Length = 104		5e-05
1mil_A	104	Transforming Protein Length = 104		5e-05
1y0m_A	61	Crystal Structure Of Of The Sh3 Domain Of Phospholi		5e-05
2eyw_A	78	N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Leng		5e-05
1cka_A	57	Structural Basis For The Specific Interaction Of Ly		5e-05
2lmj_A	66	Itk-Sh3 Length = 66		5e-05
1b07_A	65	Crk Sh3 Domain Complexed With Peptoid Inhibitor Len		5e-05
1wyx_A	69	The Crystal Structure Of The P130cas Sh3 Domain At		5e-05
1nrv_A	105	Crystal Structure Of The Sh2 Domain Of Grb10 Length		6e-05
1nrv_A	105	Crystal Structure Of The Sh2 Domain Of Grb10 Length		6e-05
1m30_A	58	Solution Structure Of N-Terminal Sh3 Domain From On		6e-05
1k4u_S	62	Solution Structure Of The C-Terminal Sh3 Domain Of		6e-05
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		6e-05
1m3a_A	57	Solution Structure Of A Circular Form Of The Trunca		6e-05
2oaw_A	65	Structure Of Shh Variant Of "bergerac" Chimera Of S		6e-05
1ywo_A	64	Phospholipase Cgamma1 Sh3 In Complex With A Slp-76		6e-05
2rot_A	70	Structure Of Chimeric Variant Of Sh3 Domain- Shh Le		6e-05
1m3c_A	60	Solution Structure Of A Circular Form Of The N-Term		7e-05
2o2w_A	67	Extending Powder Diffraction To Proteins: Structure		7e-05
2o2w_A	67	Extending Powder Diffraction To Proteins: Structure		5e-04
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		7e-05
2xmf_A	60	Myosin 1e Sh3 Length = 60		7e-05
1m3b_A	58	Solution Structure Of A Circular Form Of The N-Term		7e-05
1z9q_A	79	Solution Structure Of Sh3 Domain Of P40phox Length		8e-05
2ecz_A	70	Solution Structure Of The Sh3 Domain Of Sorbin And		9e-05
2ecz_A	70	Solution Structure Of The Sh3 Domain Of Sorbin And		6e-04
2dm0_A	125	Solution Structure Of The Sh2 Domain Of Human Tyros		9e-05
2dm0_A	125	Solution Structure Of The Sh2 Domain Of Human Tyros		9e-05
1w6x_A	60	Sh3 Domain Of P40phox, Component Of The Nadph Oxida		1e-04
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		1e-04
1uhc_A	79	Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of		1e-04
1csy_A	112	Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed		1e-04
1csy_A	112	Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed		1e-04
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		1e-04
1rqq_C	114	Crystal Structure Of The Insulin Receptor Kinase In		1e-04
1rqq_C	114	Crystal Structure Of The Insulin Receptor Kinase In		1e-04
3us4_A	98	Crystal Structure Of A Sh2 Domain Of A Megakaryocyt		1e-04
3us4_A	98	Crystal Structure Of A Sh2 Domain Of A Megakaryocyt		1e-04
2lj0_A	65	The Third Sh3 Domain Of R85fl Length = 65		2e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		2e-04
2lj1_A	64	The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Len		2e-04
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		2e-04
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		2e-04
1j3t_A	74	Solution Structure Of The Second Sh3 Domain Of Huma		3e-04
2bbu_A	164	Solution Structure Of Mouse Socs3 In Complex With A		3e-04
2bbu_A	164	Solution Structure Of Mouse Socs3 In Complex With A		3e-04
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		3e-04
2rn8_A	64	Nmr Structure Note: Murine Itk Sh3 Domain Length =		3e-04
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		3e-04
2cre_A	71	Solution Structure Of Rsgi Ruh-036, An Sh3 Domain F		3e-04
1rpy_A	114	Crystal Structure Of The Dimeric Sh2 Domain Of Aps		3e-04
1rpy_A	114	Crystal Structure Of The Dimeric Sh2 Domain Of Aps		3e-04
2k79_A	63	Solution Structure Of The Binary Complex Between Th		3e-04
1aww_A	67	Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 S		4e-04
2k3b_A	62	Seeing The Invisible: Structures Of Excited Protein		4e-04
1awj_A	77	Intramolecular Itk-Proline Complex, Nmr, Minimized		4e-04
4glm_A	72	Crystal Structure Of The Sh3 Domain Of Dnmbp Protei		4e-04
3h0f_A	73	Crystal Structure Of The Human Fyn Sh3 R96w Mutant		4e-04
3reb_B	90	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		4e-04
3h0h_A	73	Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Le		4e-04
1efn_A	59	Hiv-1 Nef Protein In Complex With R96i Mutant Fyn S		5e-04
1tuc_A	63	Alpha-Spectrin Src Homology 3 Domain, Circular Perm		5e-04
1a0n_B	69	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		5e-04
1fyn_A	62	Phosphotransferase Length = 62		5e-04
4d8d_A	58	Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant		5e-04
3ua6_A	64	Crystal Structure Of The Human Fyn Sh3 Domain Lengt		5e-04
1azg_B	67	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		5e-04
2rpn_A	59	A Crucial Role For High Intrinsic Specificity In Th		5e-04
1avz_C	57	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 D		6e-04
1shf_A	59	Crystal Structure Of The Sh3 Domain In Human Fyn; C		6e-04
3rea_B	61	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		6e-04
1m27_C	61	Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX		6e-04
1jo8_A	58	Structural Analysis Of The Yeast Actin Binding Prot		6e-04
2jmc_A	77	Chimer Between Spc-Sh3 And P41 Length = 77		6e-04
2hdv_A	111	Crystal Structure Of The Src Homology-2 Domain Of T		8e-04
2hdv_A	111	Crystal Structure Of The Src Homology-2 Domain Of T		8e-04
4f14_A	64	Structure Of The Sh3 Domain Of Human Nebulette In C		8e-04

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score =  281 bits (718), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 135/210 (64%), Positives = 166/210 (79%), Gaps = 4/210 (1%)
Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60
Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120
Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDFTPQEPGELEFRRG 176
           WVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           D I V D SD +WW G    + G+FP  Y+
Sbjct: 181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 138/200 (69%), Gaps = 29/200 (14%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A YDF      EL F+RGD++ V                         LN E D NWY+A
Sbjct: 5   AKYDFKATADDELSFKRGDILKV-------------------------LNEECDQNWYKA 39
Query: 219 ELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSV 277
           EL+GK+G IP NYIEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSV
Sbjct: 40  ELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSV 99
Query: 278 KCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-C 334
           K  + VQHFKVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++  
Sbjct: 100 KFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPT 159
Query: 335 LVQALYDFTPQEPGELEFRR 354
            VQAL+DF PQE GEL FRR
Sbjct: 160 YVQALFDFDPQEDGELGFRR 179

>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974) Length = 123

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 98/119 (82%), Gaps = 4/119 (3%)
Query: 49  PSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           P NYIEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHF
Sbjct: 4   PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 63
Query: 108 KVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDF 163
           KVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF
Sbjct: 64  KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDF 122

>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974) Length = 123

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 98/119 (82%), Gaps = 4/119 (3%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           P NYIEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHF
Sbjct: 4   PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 63
Query: 287 KVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQALYDF 342
           KVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQAL+DF
Sbjct: 64  KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDF 122

>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acetyl-L-Thi Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl] (Pkf273-791) Length = 117

Iteration: 1
 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/115 (66%), Positives = 94/115 (81%), Gaps = 4/115 (3%)
Query: 49  PSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           P NYIEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHF
Sbjct: 3   PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 62
Query: 108 KVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
           KVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 63  KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 117

>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With Cyclo-[n-Alpha-Acetyl-L-Thi Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl] (Pkf273-791) Length = 117

Iteration: 1
 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/115 (66%), Positives = 94/115 (81%), Gaps = 4/115 (3%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           P NYIEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHF
Sbjct: 3   PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHF 62
Query: 287 KVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
           KVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 63  KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 117

>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal Structure Of The Grb2-Sh2 Ac-Pyvnv Complex Length = 114

Iteration: 1
 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 90/107 (84%), Gaps = 3/107 (2%)
Query: 51  NYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
           NYIEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKV
Sbjct: 4   NYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63
Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 154
           LRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++
Sbjct: 64  LRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 110

>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal Structure Of The Grb2-Sh2 Ac-Pyvnv Complex Length = 114

Iteration: 1
 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 90/107 (84%), Gaps = 3/107 (2%)
Query: 230 NYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
           NYIEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKV
Sbjct: 4   NYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 333
           LRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++
Sbjct: 64  LRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 110

>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A 23-Membered Macrocyclic Ligand Having The Sequence Pyvnvp Length = 112

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 53  IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 2   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 61
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 62  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112

>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A 23-Membered Macrocyclic Ligand Having The Sequence Pyvnvp Length = 112

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 2   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 61
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 62  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112

>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Pyxn- Derived Tripeptide Length = 117

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 53  IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 1   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 61  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111

>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Pyxn- Derived Tripeptide Length = 117

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 1   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 61  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111

>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic Length = 117

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 53  IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 1   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 61  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111

>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic Length = 117

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 1   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 61  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 111

>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src Homology Domain-2 Of The Growth Factor Receptor Bound Protein-2, Nmr, 18 Structures Length = 112

Iteration: 1
 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 53  IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 2   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 61
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 159
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 62  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112

>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src Homology Domain-2 Of The Growth Factor Receptor Bound Protein-2, Nmr, 18 Structures Length = 112

Iteration: 1
 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 2   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 61
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE-CLVQA 338
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++   VQA
Sbjct: 62  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA 112

>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2 Sh2 Domain Length = 116

Iteration: 1
 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 3/105 (2%)
Query: 53  IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 1   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 154
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++
Sbjct: 61  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 105

>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2 Sh2 Domain Length = 116

Iteration: 1
 Score =  147 bits (372), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 3/105 (2%)
Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 1   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 333
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++
Sbjct: 61  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 105

>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide Mimetic In Complex With The Grb2 Sh2 Domain Length = 99

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 55  MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           MK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD 
Sbjct: 1   MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 60
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61  AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 97

>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide Mimetic In Complex With The Grb2 Sh2 Domain Length = 99

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           MK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD 
Sbjct: 1   MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 60
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61  AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 97

>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain Complexed With Phosphotyrosyl Heptapeptide Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2) Length = 98

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 55  MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           MK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD 
Sbjct: 1   MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 60
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61  AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 97

>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain Complexed With Phosphotyrosyl Heptapeptide Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2) Length = 98

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           MK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD 
Sbjct: 1   MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 60
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61  AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 97

>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes Reveal A Conformational Switch And Their Functional Implications. Length = 101

Iteration: 1
 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 55  MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           MK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD 
Sbjct: 4   MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 63
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 64  AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 100

>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes Reveal A Conformational Switch And Their Functional Implications. Length = 101

Iteration: 1
 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
Query: 234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           MK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD 
Sbjct: 4   MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDG 63
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 64  AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 100

>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein Sh2 Domain Complexed With The Inhibitor Length = 104

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 85/101 (84%), Gaps = 3/101 (2%)
Query: 57  NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
           +H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +G
Sbjct: 2   SHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 61
Query: 116 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 154
           K+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++
Sbjct: 62  KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 102

>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein Sh2 Domain Complexed With The Inhibitor Length = 104

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 85/101 (84%), Gaps = 3/101 (2%)
Query: 236 NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
           +H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +G
Sbjct: 2   SHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 61
Query: 295 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 333
           K+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++
Sbjct: 62  KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 102

>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain Complexed With A Phosphotyrosyl Pentapeptide Length = 98

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
Query: 56  KNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           K H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +
Sbjct: 1   KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 115 GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61  GKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96

>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain Complexed With A Phosphotyrosyl Pentapeptide Length = 98

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 81/96 (84%), Gaps = 1/96 (1%)
Query: 235 KNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           K H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +
Sbjct: 1   KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGA 60
Query: 294 GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 61  GKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96

>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human) Complexed With A Phosphotyrosyl Derivative Length = 96

Iteration: 1
 Score =  137 bits (346), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 80/94 (85%), Gaps = 1/94 (1%)
Query: 58  HDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 116
           H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK
Sbjct: 2   HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGK 61
Query: 117 FFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           +FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 62  YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 95

>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human) Complexed With A Phosphotyrosyl Derivative Length = 96

Iteration: 1
 Score =  137 bits (346), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 80/94 (85%), Gaps = 1/94 (1%)
Query: 237 HDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 295
           H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK
Sbjct: 2   HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGK 61
Query: 296 FFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           +FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 62  YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 95

>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound Protein 2 (Grb2) Sh2 Domain, 24 Structures Length = 107

Iteration: 1
 Score =  137 bits (345), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 83/98 (84%), Gaps = 3/98 (3%)
Query: 60  WYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+F
Sbjct: 3   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 62
Query: 119 LWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 154
           LWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++
Sbjct: 63  LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 100

>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound Protein 2 (Grb2) Sh2 Domain, 24 Structures Length = 107

Iteration: 1
 Score =  137 bits (345), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 83/98 (84%), Gaps = 3/98 (3%)
Query: 239 WYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+F
Sbjct: 3   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 62
Query: 298 LWVVKFNSLNELVEYHRTASVSRSQDVKLRDM--VPEE 333
           LWVVKFNSLNELV+YHR+ SVSR+Q + LRD+  VP++
Sbjct: 63  LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 100

>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly Affine Phospho Peptide Length = 96

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 60  WYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+F
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 119 LWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           LWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 65  LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96

>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A Highly Affine Phospho Peptide Length = 96

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 239 WYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+F
Sbjct: 5   WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYF 64
Query: 298 LWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           LWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 65  LWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96

>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk Length = 59

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 58/59 (98%)
Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
          MEAIAKHDF+ATA+DELSFRK+Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHD
Sbjct: 1  MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHD 59

>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk Length = 59

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 44/80 (55%), Gaps = 25/80 (31%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A +DF+     EL FR+  ++                          ILNMEDD NWYRA
Sbjct: 5   AKHDFSATADDELSFRKTQILK-------------------------ILNMEDDSNWYRA 39
Query: 219 ELDGKEGLIPSNYIEMKNHD 238
           ELDGKEGLIPSNYIEMKNHD
Sbjct: 40  ELDGKEGLIPSNYIEMKNHD 59

>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3 Domain Of Drk (Drkn Sh3 Domain) Length = 59

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 57/59 (96%)
Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
          MEAIAKHDF+ATA+DELSFRK Q+LKILNMEDD NWYRAELDGKEGLIPSNYIEMKNHD
Sbjct: 1  MEAIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMKNHD 59

>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3 Domain Of Drk (Drkn Sh3 Domain) Length = 59

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 45/80 (56%), Gaps = 25/80 (31%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A +DF+     EL FR+G ++                          ILNMEDD NWYRA
Sbjct: 5   AKHDFSATADDELSFRKGQILK-------------------------ILNMEDDSNWYRA 39
Query: 219 ELDGKEGLIPSNYIEMKNHD 238
           ELDGKEGLIPSNYIEMKNHD
Sbjct: 40  ELDGKEGLIPSNYIEMKNHD 59

>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine Phosphorylated Sites In The Linker For Activation Of T Cells (lat) By The Adaptor Protein Gads Length = 100

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 74/99 (74%)
Query: 51  NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
           ++I+++  +W++  ++R  AE LL  K  G F+IR S+SSPGDFS+SV+  D VQHFKV+
Sbjct: 2   SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 61
Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 149
           RD+ G +FLW  KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 62  RDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 100

>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of Tyrosine Phosphorylated Sites In The Linker For Activation Of T Cells (lat) By The Adaptor Protein Gads Length = 100

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 74/99 (74%)
Query: 230 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
           ++I+++  +W++  ++R  AE LL  K  G F+IR S+SSPGDFS+SV+  D VQHFKV+
Sbjct: 2   SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 61
Query: 290 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 328
           RD+ G +FLW  KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 62  RDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 100

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 11/146 (7%)
Query: 2   EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMKN--- 57
           E IAK++F+ TAE +L F K  VL I+ +  D NWY+A+   G+EG+IP+NY++ +    
Sbjct: 13  ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 72
Query: 58  -------HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
                    W++G+ITR  AERLL     G FL+R S + PGD++L V C   V+H++++
Sbjct: 73  AGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIM 132
Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRT 136
             +S       V F +L +LVE++ T
Sbjct: 133 YHASKLSIDEEVYFENLMQLVEHYTT 158

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 38/173 (21%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
           EC+  A Y+F      +L F +GDV+T                         I+ +  D 
Sbjct: 13  ECI--AKYNFHGTAEQDLPFCKGDVLT-------------------------IVAVTKDP 45
Query: 214 NWYRAELD-GKEGLIPSNYIEMKN----------HDWYYGRITRADAERLLSNKHEGAFL 262
           NWY+A+   G+EG+IP+NY++ +             W++G+ITR  AERLL     G FL
Sbjct: 46  NWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPPETGLFL 105
Query: 263 IRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRT 315
           +R S + PGD++L V C   V+H++++  +S       V F +L +LVE++ T
Sbjct: 106 VRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTT 158

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHD 59
           +A +DF A+ ++ LS  K + L++L    +  W  A+    +G +PSNYI     ++ H 
Sbjct: 86  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 145
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S GK ++
Sbjct: 146 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 205
Query: 120 WV-VKFNSLNELVEYHRTAS 138
               +FN+L ELV +H T +
Sbjct: 206 SSESRFNTLAELVHHHSTVA 225

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAF 261
           +L    +  W  A+    +G +PSNYI     ++ H WY+G ++R  AE LLS+   G+F
Sbjct: 109 VLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSF 168
Query: 262 LIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
           L+R SESSPG  S+S++    V H+++   S GK ++    +FN+L ELV +H T +
Sbjct: 169 LVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 225

>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase Length = 163

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHD 59
           +A +DF A+ ++ LS  K + L++L    +  W  A+    +G +PSNYI     ++ H 
Sbjct: 12  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 71
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S GK ++
Sbjct: 72  WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 131
Query: 120 WV-VKFNSLNELVEYHRTAS 138
               +FN+L ELV +H T +
Sbjct: 132 SSESRFNTLAELVHHHSTVA 151

>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase Length = 163

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAF 261
           +L    +  W  A+    +G +PSNYI     ++ H WY+G ++R  AE LLS+   G+F
Sbjct: 35  VLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSF 94
Query: 262 LIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
           L+R SESSPG  S+S++    V H+++   S GK ++    +FN+L ELV +H T +
Sbjct: 95  LVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 151

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHD 59
           +A +DF A+ ++ LS  K + L++L    +  W  A+    +G +PSNYI     ++ H 
Sbjct: 47  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 106
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S GK ++
Sbjct: 107 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 166
Query: 120 WV-VKFNSLNELVEYHRTAS 138
               +FN+L ELV +H T +
Sbjct: 167 SSESRFNTLAELVHHHSTVA 186

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAF 261
           +L    +  W  A+    +G +PSNYI     ++ H WY+G ++R  AE LLS+   G+F
Sbjct: 70  VLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSF 129
Query: 262 LIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
           L+R SESSPG  S+S++    V H+++   S GK ++    +FN+L ELV +H T +
Sbjct: 130 LVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 186

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
           +A +D+ +  E +LSF+K + L+I+N  +   W    L  G+ G IPSNY+     ++  
Sbjct: 89  VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 148
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 149 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 208
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +FNSL +LV Y+
Sbjct: 209 LDSGGFYITSRTQFNSLQQLVAYY 232

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           ALYD+  +   +L F++G+ + + + ++  WW                  +   ++    
Sbjct: 90  ALYDYESRTETDLSFKKGERLQIVNNTEGDWW------------------LAHSLS---- 127
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
              G+ G IPSNY+     ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G 
Sbjct: 128 --TGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 185
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           + LSV   D      V+H+K+ +  SG F++    +FNSL +LV Y+
Sbjct: 186 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 232

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
           +A +D+ +  E +LSF+K + L+I+N  +   W    L  G+ G IPSNY+     ++  
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 66  EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +FNSL +LV Y+
Sbjct: 126 LDSGGFYITSRTQFNSLQQLVAYY 149

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           ALYD+  +   +L F++G+ + + + ++  WW                           +
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA------------------------HS 42
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
              G+ G IPSNY+     ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G 
Sbjct: 43  LSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 102
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           + LSV   D      V+H+K+ +  SG F++    +FNSL +LV Y+
Sbjct: 103 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 149

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
           +A +D+ +  E +LSF+K + L+I+N  +   W    L  G+ G IPSNY+     ++  
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 66  EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +FNSL +LV Y+
Sbjct: 126 LDSGGFYITSRTQFNSLQQLVAYY 149

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           ALYD+  +   +L F++G+ + + + ++  WW                           +
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA------------------------HS 42
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
              G+ G IPSNY+     ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G 
Sbjct: 43  LSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 102
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           + LSV   D      V+H+K+ +  SG F++    +FNSL +LV Y+
Sbjct: 103 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 149

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
           +A +D+ +  E +LSF+K + L+I+N  +   W    L  G+ G IPSNY+     ++  
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 66  EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +FNSL +LV Y+
Sbjct: 126 LDSGGFYITSRTQFNSLQQLVAYY 149

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           ALYD+  +   +L F++G+ + + + ++  WW                           +
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA------------------------HS 42
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
              G+ G IPSNY+     ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G 
Sbjct: 43  LSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGA 102
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           + LSV   D      V+H+K+ +  SG F++    +FNSL +LV Y+
Sbjct: 103 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYY 149

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH 58
          MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H
Sbjct: 10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 67

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 25/79 (31%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A YDF      EL F+RGD++ V                         LN E D NWY+A
Sbjct: 14  AKYDFKATADDELSFKRGDILKV-------------------------LNEECDQNWYKA 48
Query: 219 ELDGKEGLIPSNYIEMKNH 237
           EL+GK+G IP NYIEMK H
Sbjct: 49  ELNGKDGFIPKNYIEMKPH 67

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYI----EMKNH 58
           +A +D+ +  E +LSF+K + L+I+N  +   W    L  G+ G IPSNY+     ++  
Sbjct: 7   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPSDSIQAE 66
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 67  EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 126
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 127 LDSGGFYITSRTQFSSLQQLVAYY 150

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 36/167 (21%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           ALYD+  +   +L F++G+ + + + ++  WW                           +
Sbjct: 8   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA------------------------HS 43
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGD 272
              G+ G IPSNY+     ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G 
Sbjct: 44  LTTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNPENPRGTFLVRESETTKGA 103
Query: 273 FSLSVKCSD-----GVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           + LSV   D      V+H+K+ +  SG F++    +F+SL +LV Y+
Sbjct: 104 YCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSLQQLVAYY 150

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 17/162 (10%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI----EMKNH 58
           +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+     ++  
Sbjct: 7   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAE 66
Query: 59  DWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
           +WY+G++ R DAER LLS     G FLIR SE++ G +SLS++       D V+H+K+ +
Sbjct: 67  EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRK 126
Query: 112 -DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
            D+ G +     +F +L +LV+++      R+  +  R +VP
Sbjct: 127 LDNGGYYITTRAQFETLQQLVQHYS----ERAAGLSSRLVVP 164

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 40/189 (21%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
            L  ALYD+  +   +L F +G+   + + S+  WW                        
Sbjct: 4   TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 41
Query: 215 WYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER-LLS-NKHEGAFLIRVSES 268
             R+   G+ G IPSNY+     ++  +WY+G++ R DAER LLS     G FLIR SE+
Sbjct: 42  --RSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESET 99
Query: 269 SPGDFSLSVK-----CSDGVQHFKVLR-DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 322
           + G +SLS++       D V+H+K+ + D+ G +     +F +L +LV+++      R+ 
Sbjct: 100 TKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYS----ERAA 155
Query: 323 DVKLRDMVP 331
            +  R +VP
Sbjct: 156 GLSSRLVVP 164

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI----EMKNH 58
           +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+     ++  
Sbjct: 8   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAE 67
Query: 59  DWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHFKVLR 111
           +WY+G++ R DAER LLS     G FLIR SE++ G +SLS++       D V+H+K+ +
Sbjct: 68  EWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIRK 127
Query: 112 -DSSGKFFLWVVKFNSLNELVEYH 134
            D+ G +     +F +L +LV+++
Sbjct: 128 LDNGGYYITTRAQFETLQQLVQHY 151

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 36/171 (21%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
            L  ALYD+  +   +L F +G+   + + S+  WW                        
Sbjct: 5   TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA---------------------- 42
Query: 215 WYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER-LLS-NKHEGAFLIRVSES 268
             R+   G+ G IPSNY+     ++  +WY+G++ R DAER LLS     G FLIR SE+
Sbjct: 43  --RSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESET 100
Query: 269 SPGDFSLSVK-----CSDGVQHFKVLR-DSSGKFFLWVVKFNSLNELVEYH 313
           + G +SLS++       D V+H+K+ + D+ G +     +F +L +LV+++
Sbjct: 101 TKGAYSLSIRDWDDXKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHY 151

>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii Length = 230

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 28/189 (14%)
Query: 46  GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 105
           G +  N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V 
Sbjct: 1   GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60
Query: 106 HFKVLRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASV 139
           H+ +                    S  +  +   +F+SL  L+E+++            V
Sbjct: 61  HYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPV 120
Query: 140 SRSQDVKLRDMVPEEC-LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-AR 197
           SRS+      +  EE   V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    +
Sbjct: 121 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK 180
Query: 198 KGLFPATYI 206
           +G+ P  Y+
Sbjct: 181 RGMIPVPYV 189

>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii Length = 230

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 27/157 (17%)
Query: 225 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 284
           G +  N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V 
Sbjct: 1   GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60
Query: 285 HFKVLRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASV 318
           H+ +                    S  +  +   +F+SL  L+E+++            V
Sbjct: 61  HYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPV 120
Query: 319 SRSQDVKLRDMVPEEC-LVQALYDFTPQEPGELEFRR 354
           SRS+      +  EE   V+AL+DF   +  +L F++
Sbjct: 121 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 157

>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10 Structures Length = 56

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
          MEAIAK DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK
Sbjct: 1  MEAIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEMK 56

>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10 Structures Length = 56

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 25/77 (32%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A  DF      EL F+RGD++ V                         LN E D NWY+A
Sbjct: 5   AKVDFKATADDELSFKRGDILKV-------------------------LNEESDQNWYKA 39
Query: 219 ELDGKEGLIPSNYIEMK 235
           EL+GK+G IP NYIEMK
Sbjct: 40  ELNGKDGFIPKNYIEMK 56

>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii Length = 304

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 59/252 (23%)
Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
            N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +
Sbjct: 3   GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 62
Query: 110 LRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASVSRSQ 143
                               S  +  +   +F+SL  L+E+++            VSRS+
Sbjct: 63  NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 122
Query: 144 DVKLRDMVPEEC-LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFP 202
                 +  EE   V+AL+DF   +  +L F++GD++ + D+ ++ WW            
Sbjct: 123 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWW------------ 170
Query: 203 ATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFL 262
                N ED         +GK G+IP  Y+E         R   A    L+    EG+  
Sbjct: 171 -----NAEDS--------EGKRGMIPVPYVEKY-------RPASASVSALIGGNQEGSHP 210
Query: 263 IRVSESSPGDFS 274
             +    PG ++
Sbjct: 211 QPLGGPEPGPYA 222

>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii Length = 304

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 27/153 (17%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
            N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +
Sbjct: 3   GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 62
Query: 289 LRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASVSRSQ 322
                               S  +  +   +F+SL  L+E+++            VSRS+
Sbjct: 63  NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 122
Query: 323 DVKLRDMVPEEC-LVQALYDFTPQEPGELEFRR 354
                 +  EE   V+AL+DF   +  +L F++
Sbjct: 123 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 155

>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase Complexed With The 10 Residue Synthetic Phosphotyrosyl Peptide Tegqpyqpqpa Length = 175

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 18/150 (12%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN---- 57
           IA H +  + + +L F K + L+IL  E    W++A+    G+EG IP N++   N    
Sbjct: 16  IALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEP 73
Query: 58  HDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKV 109
             W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+
Sbjct: 74  EPWFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI 132
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
               +G F++   + F  L+ELV ++  AS
Sbjct: 133 RNLDNGGFYISPRITFPGLHELVRHYTNAS 162

>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase Complexed With The 10 Residue Synthetic Phosphotyrosyl Peptide Tegqpyqpqpa Length = 175

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 39/178 (21%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
           ++ LV AL+ + P   G+L F +G+ + + ++S + WW  +                   
Sbjct: 11  QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQ------------------- 50
Query: 213 MNWYRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAERLL---SNKHEGAFLIRV 265
                +   G+EG IP N++   N      W++  ++R DAER L    N H G+FLIR 
Sbjct: 51  -----SLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTH-GSFLIRE 104
Query: 266 SESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
           SES+ G FSLSV+  D      V+H+K+    +G F++   + F  L+ELV ++  AS
Sbjct: 105 SESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 162

>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From Homo Sapiens At 2.36 A Resolution Length = 175

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 18/150 (12%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN---- 57
           IA H +  + + +L F K + L+IL  E    W++A+    G+EG IP N++   N    
Sbjct: 16  IALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEP 73
Query: 58  HDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKV 109
             W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+
Sbjct: 74  EPWFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKI 132
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
               +G F++   + F  L+ELV ++  AS
Sbjct: 133 RNLDNGGFYISPRITFPGLHELVRHYTNAS 162

>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From Homo Sapiens At 2.36 A Resolution Length = 175

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 39/178 (21%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
           ++ LV AL+ + P   G+L F +G+ + + ++S + WW  +                   
Sbjct: 11  QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQ------------------- 50
Query: 213 MNWYRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAERLL---SNKHEGAFLIRV 265
                +   G+EG IP N++   N      W++  ++R DAER L    N H G+FLIR 
Sbjct: 51  -----SLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTH-GSFLIRE 104
Query: 266 SESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
           SES+ G FSLSV+  D      V+H+K+    +G F++   + F  L+ELV ++  AS
Sbjct: 105 SESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 162

>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I Length = 204

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 28/187 (14%)
Query: 48  IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           +  N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60
Query: 108 KVLRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASVSR 141
            +                    S  +  +   +F+SL  L+E+++            VSR
Sbjct: 61  IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120
Query: 142 SQDVKLRDMVPEEC-LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKG 199
           S+      +  EE   V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 180
Query: 200 LFPATYI 206
           + P  Y+
Sbjct: 181 MIPVPYV 187

>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I Length = 204

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 27/155 (17%)
Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           +  N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60
Query: 287 KVLRD-----------------SSGKFFLWVVKFNSLNELVEYHR---------TASVSR 320
            +                    S  +  +   +F+SL  L+E+++            VSR
Sbjct: 61  IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120
Query: 321 SQDVKLRDMVPEEC-LVQALYDFTPQEPGELEFRR 354
           S+      +  EE   V+AL+DF   +  +L F++
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 155

>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of P130cas Length = 167

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 18/151 (11%)
Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN--- 57
            IA H +  + + +L F K + L+IL  E    W++A+    G+EG IP N++   N   
Sbjct: 7   VIALHSYEPSHDGDLGFEKGEQLRIL--EQSGEWWKAQSLTTGQEGFIPFNFVAKANSLE 64
Query: 58  -HDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFK 108
              W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K
Sbjct: 65  PEPWFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYK 123
Query: 109 VLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
           +    +G F++   + F  L+ELV ++  AS
Sbjct: 124 IRNLDNGGFYISPRITFPGLHELVRHYTNAS 154

>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of P130cas Length = 167

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 39/175 (22%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           LV AL+ + P   G+L F +G+ + + ++S + WW  +                      
Sbjct: 6   LVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQ---------------------- 42
Query: 216 YRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAERLL---SNKHEGAFLIRVSES 268
             +   G+EG IP N++   N      W++  ++R DAER L    N H G+FLIR SES
Sbjct: 43  --SLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTH-GSFLIRESES 99
Query: 269 SPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
           + G FSLSV+  D      V+H+K+    +G F++   + F  L+ELV ++  AS
Sbjct: 100 TAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 154

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 16/162 (9%)
Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMK 56
            +A +D+ A   ++LSF+K   + +L  E+   W++A      KEG IPSNY+     ++
Sbjct: 5   VVALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYVARVDSLE 62
Query: 57  NHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHFKV 109
             +W++  I+R DAER  L      G+F+IR SE++ G +SLSV     +  D V+H+K+
Sbjct: 63  TEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKI 122
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 150
               +G F++     F++L ELV++++  +    Q + +  M
Sbjct: 123 RTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 164

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 52/228 (22%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
           E+ +V ALYD+      +L F++GD + V + S + WW                      
Sbjct: 1   EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKA-------------------- 39
Query: 213 MNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVS 266
               R+    KEG IPSNY+     ++  +W++  I+R DAER  L      G+F+IR S
Sbjct: 40  ----RSLATRKEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDS 95
Query: 267 ESSPGDFSLSV-----KCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSR 320
           E++ G +SLSV     +  D V+H+K+    +G F++     F++L ELV++++  +   
Sbjct: 96  ETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGL 155
Query: 321 SQDVKLRDMVPEECLVQALYDFTPQEPGELEF----RRDLKIKRRKSA 364
            Q +     VP  C+        PQ+P E +     R  LK++++  A
Sbjct: 156 CQKLS----VP--CMSS-----KPQKPWEKDAWEIPRESLKLEKKLGA 192

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 16/162 (9%)
Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMK 56
            +A +D+ A   ++LSF+K   + +L  E+   W++A      KEG IPSNY+     ++
Sbjct: 11  VVALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYVARVDSLE 68
Query: 57  NHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHFKV 109
             +W++  I+R DAER  L      G+F+IR SE++ G +SLSV     +  D V+H+K+
Sbjct: 69  TEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKI 128
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 150
               +G F++     F++L ELV++++  +    Q + +  M
Sbjct: 129 RTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 170

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 52/225 (23%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           +V ALYD+      +L F++GD + V + S + WW                         
Sbjct: 10  IVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKA----------------------- 45
Query: 216 YRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESS 269
            R+    KEG IPSNY+     ++  +W++  I+R DAER  L      G+F+IR SE++
Sbjct: 46  -RSLATRKEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETT 104
Query: 270 PGDFSLSV-----KCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQD 323
            G +SLSV     +  D V+H+K+    +G F++     F++L ELV++++  +    Q 
Sbjct: 105 KGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQK 164
Query: 324 VKLRDMVPEECLVQALYDFTPQEPGELEF----RRDLKIKRRKSA 364
           +     VP  C+        PQ+P E +     R  LK++++  A
Sbjct: 165 LS----VP--CMSS-----KPQKPWEKDAWEIPRESLKLEKKLGA 198

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 16/162 (9%)
Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMK 56
            +A +D+ A   ++LSF+K   + +L  E+   W++A      KEG IPSNY+     ++
Sbjct: 12  VVALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYVARVDSLE 69
Query: 57  NHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHFKV 109
             +W++  I+R DAER  L      G+F+IR SE++ G +SLSV     +  D V+H+K+
Sbjct: 70  TEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKI 129
Query: 110 LRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 150
               +G F++     F++L ELV++++  +    Q + +  M
Sbjct: 130 RTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 171

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 37/195 (18%)
Query: 147 LRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +R+   E+ +V ALYD+      +L F++GD + V + S + WW     A +        
Sbjct: 2   IREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATR-------- 52
Query: 207 LNMEDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAER--LLSNKHEGA 260
                           KEG IPSNY+     ++  +W++  I+R DAER  L      G+
Sbjct: 53  ----------------KEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGS 96
Query: 261 FLIRVSESSPGDFSLSV-----KCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHR 314
           F+IR SE++ G +SLSV     +  D V+H+K+    +G F++     F++L ELV++++
Sbjct: 97  FMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYK 156
Query: 315 TASVSRSQDVKLRDM 329
             +    Q + +  M
Sbjct: 157 KGNDGLCQKLSVPCM 171

>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX Length = 123

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 49  PSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 104
           PSNYI     ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V
Sbjct: 3   PSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRV 62
Query: 105 QHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
            H+++   S GK ++    +FN+L ELV +H T +
Sbjct: 63  YHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 97

>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX Length = 123

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 5/95 (5%)
Query: 228 PSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 283
           PSNYI     ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V
Sbjct: 3   PSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRV 62
Query: 284 QHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
            H+++   S GK ++    +FN+L ELV +H T +
Sbjct: 63  YHYRINTASDGKLYVSSESRFNTLAELVHHHSTVA 97

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           E   VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++  R+G+FP+ Y+
Sbjct: 1   ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           E   VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++  R+G+FP+ Y+
Sbjct: 1   ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|2LQN|A Chain A, Solution Structure Of Crkl Length = 303

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  +  V H+ +    + +F +
Sbjct: 14  WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL-----------------VQALYD 162
              +F+ L  L+E+++   +  +  ++     P   +                 V+ LYD
Sbjct: 74  GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYD 133
Query: 163 FTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYILNMEDDMNWYRAELD 221
           F   +  +L F++G+++ + ++ ++ WW       R G+ P  Y+  +       R+   
Sbjct: 134 FPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL------VRSSPH 187
Query: 222 GKEG 225
           GK G
Sbjct: 188 GKHG 191

>pdb|2LQN|A Chain A, Solution Structure Of Crkl Length = 303

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  +  V H+ +    + +F +
Sbjct: 14  WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 299 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL-----------------VQALYD 341
              +F+ L  L+E+++   +  +  ++     P   +                 V+ LYD
Sbjct: 74  GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYD 133
Query: 342 FTPQEPGELEFRR 354
           F   +  +L F++
Sbjct: 134 FPGNDAEDLPFKK 146

>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl Length = 303

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  +  V H+ +    + +F +
Sbjct: 14  WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL-----------------VQALYD 162
              +F+ L  L+E+++   +  +  ++     P   +                 V+ LYD
Sbjct: 74  GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYD 133
Query: 163 FTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYILNMEDDMNWYRAELD 221
           F   +  +L F++G+++ + ++ ++ WW       R G+ P  Y+  +       R+   
Sbjct: 134 FPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL------VRSSPH 187
Query: 222 GKEG 225
           GK G
Sbjct: 188 GKHG 191

>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl Length = 303

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  +  V H+ +    + +F +
Sbjct: 14  WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 73
Query: 299 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL-----------------VQALYD 341
              +F+ L  L+E+++   +  +  ++     P   +                 V+ LYD
Sbjct: 74  GDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYD 133
Query: 342 FTPQEPGELEFRR 354
           F   +  +L F++
Sbjct: 134 FPGNDAEDLPFKK 146

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 41/54 (75%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           E   VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++  R+G+FP+ Y+
Sbjct: 3   ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56

>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2 Length = 525

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 96/277 (34%)
Query: 55  MKNHDWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           MK+  W++  IT  +AE LL  +  +G+FL R S+S+PGD +LSV+ +  V H K+   +
Sbjct: 1   MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKI--QN 58
Query: 114 SGKFF--LWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGEL 171
           +G ++      KF +L ELV+Y+                               +  G+L
Sbjct: 59  TGDYYDLYGGEKFATLAELVQYYM------------------------------EHHGQL 88
Query: 172 EFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN--WYRAELDGKEGLIPS 229
           + + GDVI +                       Y LN  D  +  W+   L GKE     
Sbjct: 89  KEKNGDVIEL----------------------KYPLNCADPTSERWFHGHLSGKE----- 121
Query: 230 NYIEMKNHDWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSD------- 281
                              AE+LL+ K + G+FL+R S+S PGDF LSV+  D       
Sbjct: 122 -------------------AEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESND 162
Query: 282 ---GVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHR 314
               V H  ++R    K+ +    +F+SL +LVE+++
Sbjct: 163 GKSKVTHV-MIRCQELKYDVGGGERFDSLTDLVEHYK 198

>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related Kinase Length = 121

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 55  MKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
           ++   W++G I RADAE+  L S    GAFLIR SES  GDFSLSV     V+H+++ R 
Sbjct: 13  LQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRL 72
Query: 113 SSGKFFLWVVK-FNSLNELVEYHRTAS 138
             G FFL   K F++LNE V Y+ T S
Sbjct: 73  DEGGFFLTRRKVFSTLNEFVNYYTTTS 99

>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related Kinase Length = 121

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 234 MKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
           ++   W++G I RADAE+  L S    GAFLIR SES  GDFSLSV     V+H+++ R 
Sbjct: 13  LQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRL 72
Query: 292 SSGKFFLWVVK-FNSLNELVEYHRTAS 317
             G FFL   K F++LNE V Y+ T S
Sbjct: 73  DEGGFFLTRRKVFSTLNEFVNYYTTTS 99

>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain Length = 119

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
           P N +E   H WY+G ++R+ AE LLS+   G+FL+R SESSPG  S+S++    V H++
Sbjct: 9   PVNSLE--KHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYR 66
Query: 109 VLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
           +   + GK ++    +F++L ELV +H T +
Sbjct: 67  INTTADGKVYVTAESRFSTLAELVHHHSTVA 97

>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain Length = 119

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
           P N +E   H WY+G ++R+ AE LLS+   G+FL+R SESSPG  S+S++    V H++
Sbjct: 9   PVNSLE--KHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYR 66
Query: 288 VLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
           +   + GK ++    +F++L ELV +H T +
Sbjct: 67  INTTADGKVYVTAESRFSTLAELVHHHSTVA 97

>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide From Epec Protein Tir Length = 102

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 60  WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 117
           WYYG++TR  AE  L+ + HEG FLIR SESSP DFS+S+K     +HFKV L+++   +
Sbjct: 7   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 64
Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQD 144
            +   KF+++ ELVE+++ A +  S+ 
Sbjct: 65  CIGQRKFSTMEELVEHYKKAPIFTSEQ 91

>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide From Epec Protein Tir Length = 102

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 296
           WYYG++TR  AE  L+ + HEG FLIR SESSP DFS+S+K     +HFKV L+++   +
Sbjct: 7   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 64
Query: 297 FLWVVKFNSLNELVEYHRTASVSRSQD 323
            +   KF+++ ELVE+++ A +  S+ 
Sbjct: 65  CIGQRKFSTMEELVEHYKKAPIFTSEQ 91

>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed Length = 99

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 60  WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 117
           WYYG++TR  AE  L+ + HEG FLIR SESSP DFS+S+K     +HFKV L+++   +
Sbjct: 3   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 60
Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQD 144
            +   KF+++ ELVE+++ A +  S+ 
Sbjct: 61  CIGQRKFSTMEELVEHYKKAPIFTSEQ 87

>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed Length = 99

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGKF 296
           WYYG++TR  AE  L+ + HEG FLIR SESSP DFS+S+K     +HFKV L+++   +
Sbjct: 3   WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQLKETV--Y 60
Query: 297 FLWVVKFNSLNELVEYHRTASVSRSQD 323
            +   KF+++ ELVE+++ A +  S+ 
Sbjct: 61  CIGQRKFSTMEELVEHYKKAPIFTSEQ 87

>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX Length = 112

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 55  MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S 
Sbjct: 2   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 115 GKFFLWV-VKFNSLNELVEYHRTAS 138
           GK ++    +FN+L ELV +H T +
Sbjct: 62  GKLYVSSESRFNTLAELVHHHSTVA 86

>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX Length = 112

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S 
Sbjct: 2   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 294 GKFFLWV-VKFNSLNELVEYHRTAS 317
           GK ++    +FN+L ELV +H T +
Sbjct: 62  GKLYVSSESRFNTLAELVHHHSTVA 86

>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2 Domain Of C-Abl Length = 109

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 55  MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S 
Sbjct: 6   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 65
Query: 115 GKFFLWV-VKFNSLNELVEYHRTAS 138
           GK ++    +FN+L ELV +H T +
Sbjct: 66  GKLYVSSESRFNTLAELVHHHSTVA 90

>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology 2 Domain Of C-Abl Length = 109

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S 
Sbjct: 6   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 65
Query: 294 GKFFLWV-VKFNSLNELVEYHRTAS 317
           GK ++    +FN+L ELV +H T +
Sbjct: 66  GKLYVSSESRFNTLAELVHHHSTVA 90

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           VQAL+DF PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           VQAL+DF PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+
Sbjct: 3   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           VQAL+DF PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           VQAL+DF PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN Length = 100

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 60  WYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           W++G I+R++A R L       GAFLIRVSE    D+ LSV+ +  V+H+K+ R + G+ 
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 118 FL-WVVKFNSLNELVEYHRTASVS 140
            L   V F SL ELV YHR  S+S
Sbjct: 64  HLNEAVSFLSLPELVNYHRAQSLS 87

>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN Length = 100

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 239 WYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           W++G I+R++A R L       GAFLIRVSE    D+ LSV+ +  V+H+K+ R + G+ 
Sbjct: 4   WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 297 FL-WVVKFNSLNELVEYHRTASVS 319
            L   V F SL ELV YHR  S+S
Sbjct: 64  HLNEAVSFLSLPELVNYHRAQSLS 87

>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein Tyrosine Phosphatase Shp-1 Length = 595

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 104/274 (37%), Gaps = 93/274 (33%)
Query: 60  WYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++  ++  DAE LL  +   G+FL R S  + GDFSLSV+  D V H ++   +SG F+
Sbjct: 4   WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRI--QNSGDFY 61
Query: 119 --LWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
                 KF +L ELVEY+                               Q+ G L+ R G
Sbjct: 62  DLYGGEKFATLTELVEYYT------------------------------QQQGVLQDRDG 91
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN--WYRAELDGKEGLIPSNYIEM 234
            +I +                       Y LN  D  +  WY   + G            
Sbjct: 92  TIIHL----------------------KYPLNCSDPTSERWYHGHMSG------------ 117
Query: 235 KNHDWYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSDG----VQ 284
                         AE LL  K E   FL+R S S PGDF LSV     K   G    V 
Sbjct: 118 ------------GQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVT 165
Query: 285 HFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASV 318
           H KV+ +        +  F+SL +LVE+ +   +
Sbjct: 166 HIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGI 199

>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1 Length = 532

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 105/274 (38%), Gaps = 93/274 (33%)
Query: 60  WYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++  ++  DAE LL  +   G+FL R S  + GDFSLSV+  D V H ++   +SG F+
Sbjct: 4   WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRI--QNSGDFY 61
Query: 119 --LWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
                 KF +L ELVEY+                               Q+ G L+ R G
Sbjct: 62  DLYGGEKFATLTELVEYYT------------------------------QQQGVLQDRDG 91
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN--WYRAELDGKEGLIPSNYIEM 234
            +I +                       Y LN  D  +  WY   + G +          
Sbjct: 92  TIIHL----------------------KYPLNCSDPTSERWYHGHMSGGQ---------- 119
Query: 235 KNHDWYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSDG----VQ 284
                         AE LL  K E   FL+R S S PGDF LSV     K   G    V 
Sbjct: 120 --------------AETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVT 165
Query: 285 HFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASV 318
           H KV+ +        +  F+SL +LVE+ +   +
Sbjct: 166 HIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGI 199

>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide From Translocated Intimin Receptor (Tir) Of Epec Length = 102

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 59  DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGK 116
           +WYYG +TR  AE  L+ +  EG FLIR SESSP DFS+S+K S   +HFKV L D+   
Sbjct: 6   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV-- 63
Query: 117 FFLWVVKFNSLNELVEYHRTASVSRSQ 143
           + +   +F++++ELVE+++ A +  S+
Sbjct: 64  YCIGQRRFHTMDELVEHYKKAPIFTSE 90

>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A Decaphosphopeptide From Translocated Intimin Receptor (Tir) Of Epec Length = 102

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 238 DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGK 295
           +WYYG +TR  AE  L+ +  EG FLIR SESSP DFS+S+K S   +HFKV L D+   
Sbjct: 6   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV-- 63
Query: 296 FFLWVVKFNSLNELVEYHRTASVSRSQ 322
           + +   +F++++ELVE+++ A +  S+
Sbjct: 64  YCIGQRRFHTMDELVEHYKKAPIFTSE 90

>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain Length = 98

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 59  DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGK 116
           +WYYG +TR  AE  L+ +  EG FLIR SESSP DFS+S+K S   +HFKV L D+   
Sbjct: 2   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV-- 59
Query: 117 FFLWVVKFNSLNELVEYHRTASVSRSQ 143
           + +   +F++++ELVE+++ A +  S+
Sbjct: 60  YCIGQRRFHTMDELVEHYKKAPIFTSE 86

>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain Length = 98

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 238 DWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKV-LRDSSGK 295
           +WYYG +TR  AE  L+ +  EG FLIR SESSP DFS+S+K S   +HFKV L D+   
Sbjct: 2   EWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV-- 59
Query: 296 FFLWVVKFNSLNELVEYHRTASVSRSQ 322
           + +   +F++++ELVE+++ A +  S+
Sbjct: 60  YCIGQRRFHTMDELVEHYKKAPIFTSE 86

>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide S(Ptr)vnvqn Length = 104

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 4   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++W   +F+SL +LV Y+
Sbjct: 64  LDSGGFYIWSRTQFSSLQQLVAYY 87

>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide S(Ptr)vnvqn Length = 104

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 4   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++W   +F+SL +LV Y+
Sbjct: 64  LDSGGFYIWSRTQFSSLQQLVAYY 87

>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine) Length = 107

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 8/88 (9%)
Query: 55  MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G +SLSV   D      V+H+
Sbjct: 4   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHY 63
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
           K+ +  SG F++    +FNSL +LV Y+
Sbjct: 64  KIRKLDSGGFYITSRTQFNSLQQLVAYY 91

>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine) Length = 107

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G +SLSV   D      V+H+
Sbjct: 4   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHY 63
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           K+ +  SG F++    +FNSL +LV Y+
Sbjct: 64  KIRKLDSGGFYITSRTQFNSLQQLVAYY 91

>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), Oxidized Form Length = 106

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G+ITR  AERLL     G FL+R S + PGD++L V C   V+H++++  +S     
Sbjct: 10  WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSID 69
Query: 120 WVVKFNSLNELVEYHRT 136
             V F +L +LVE++ +
Sbjct: 70  EEVYFENLMQLVEHYTS 86

>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), Oxidized Form Length = 106

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G+ITR  AERLL     G FL+R S + PGD++L V C   V+H++++  +S     
Sbjct: 10  WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRIMYHASKLSID 69
Query: 299 WVVKFNSLNELVEYHRT 315
             V F +L +LVE++ +
Sbjct: 70  EEVYFENLMQLVEHYTS 86

>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein Interactions Length = 107

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 55  MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+
Sbjct: 4   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 63
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
           K+ +  SG F++    +FNSL +LV Y+
Sbjct: 64  KIRKLDSGGFYITSRTQFNSLQQLVAYY 91

>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein Interactions Length = 107

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+
Sbjct: 4   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 63
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           K+ +  SG F++    +FNSL +LV Y+
Sbjct: 64  KIRKLDSGGFYITSRTQFNSLQQLVAYY 91

>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate. Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 55  MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+
Sbjct: 2   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHY 61
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
           K+ +  SG F++    +FNSL +LV Y+
Sbjct: 62  KIRKLDSGGFYITSRTQFNSLQQLVAYY 89

>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate. Length = 108

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+
Sbjct: 2   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHY 61
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           K+ +  SG F++    +FNSL +LV Y+
Sbjct: 62  KIRKLDSGGFYITSRTQFNSLQQLVAYY 89

>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300. Length = 108

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 55  MKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+
Sbjct: 2   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 61
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
           K+ +  SG F++    +FNSL +LV Y+
Sbjct: 62  KIRKLDSGGFYITSRTQFNSLQQLVAYY 89

>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300. Length = 108

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+
Sbjct: 2   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 61
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
           K+ +  SG F++    +FNSL +LV Y+
Sbjct: 62  KIRKLDSGGFYITSRTQFNSLQQLVAYY 89

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALYDF P+  GEL FR GD+IT+T++ D++W+ G +  + G FP +Y+
Sbjct: 17  KALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYV 65

>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With Conformationally Constrained Peptide Inhibitor Length = 106

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 4   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 64  LDSGGFYITSRTQFSSLQQLVAYY 87

>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain With Conformationally Constrained Peptide Inhibitor Length = 106

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 4   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++    +F+SL +LV Y+
Sbjct: 64  LDSGGFYITSRTQFSSLQQLVAYY 87

>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition Domain Sh2 Of V-Src Complexed With Tyrosine-Phosphorylated Peptides Length = 104

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 4   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 64  LDSGGFYITSRTQFSSLQQLVAYY 87

>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition Domain Sh2 Of V-Src Complexed With Tyrosine-Phosphorylated Peptides Length = 104

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 4   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++    +F+SL +LV Y+
Sbjct: 64  LDSGGFYITSRTQFSSLQQLVAYY 87

>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly Phosphorylated Peptide Pqpyepyipi Length = 103

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 3   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 63  LDSGGFYITSRTQFSSLQQLVAYY 86

>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly Phosphorylated Peptide Pqpyepyipi Length = 103

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 3   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++    +F+SL +LV Y+
Sbjct: 63  LDSGGFYITSRTQFSSLQQLVAYY 86

>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 5   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 65  LDSGGFYITSRTQFSSLQQLVAYY 88

>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 5   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++    +F+SL +LV Y+
Sbjct: 65  LDSGGFYITSRTQFSSLQQLVAYY 88

>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With Peptide (Sdpyanfk) Length = 102

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 3   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 63  LDSGGFYITSRTQFSSLQQLVAYY 86

>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With Peptide (Sdpyanfk) Length = 102

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 3   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 62
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++    +F+SL +LV Y+
Sbjct: 63  LDSGGFYITSRTQFSSLQQLVAYY 86

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           ALY+F  ++PG+L F++GDVIT+  +SD    WW G    ++G+FPA Y+
Sbjct: 8   ALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           V ALY F  Q+PG+L F+ GD ITV  ++D H  WW G++  + G+FPA Y+
Sbjct: 20  VTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71

>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), C122s Mutant Length = 106

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G+ITR  AERLL     G FL+R S + PGD++L V     V+H++++  +S     
Sbjct: 10  WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSID 69
Query: 120 WVVKFNSLNELVEYHRT 136
             V F +L +LVE++ +
Sbjct: 70  EEVYFENLMQLVEHYTS 86

>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl- Terminal Src Kinase), C122s Mutant Length = 106

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G+ITR  AERLL     G FL+R S + PGD++L V     V+H++++  +S     
Sbjct: 10  WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSID 69
Query: 299 WVVKFNSLNELVEYHRT 315
             V F +L +LVE++ +
Sbjct: 70  EEVYFENLMQLVEHYTS 86

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           ALY F  +E G+L FR+GDVIT+  +SD    WW G +  R+G+FPA Y+
Sbjct: 8   ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57

>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain Length = 112

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 55  MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 107
           ++  +WY+G+ITR ++ERLL N     G FL+R SE+  G ++LSV   D      V+H+
Sbjct: 6   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHY 65
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYH 134
            + +  SG F++    +FNSL +LV Y+
Sbjct: 66  LIRKLDSGGFYITSRTQFNSLQQLVAYY 93

>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain Length = 112

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHF 286
           ++  +WY+G+ITR ++ERLL N     G FL+R SE+  G ++LSV   D      V+H+
Sbjct: 6   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHY 65
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYH 313
            + +  SG F++    +FNSL +LV Y+
Sbjct: 66  LIRKLDSGGFYITSRTQFNSLQQLVAYY 93

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 2   EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN---- 57
           + IA +D+ A  EDELSF K Q++ ++N +DD +W++ E++G  GL PSNY++M      
Sbjct: 20  QVIAMYDYAANNEDELSFSKGQLINVMN-KDDPDWWQGEINGVTGLFPSNYVKMTTDSDP 78
Query: 58  HDWYYGRITRADAERLLSNKHEGAF--LIRVSESSPGDFSLSVK 99
              +   +   D  + +  K +G    LI+  E    D  L V+
Sbjct: 79  SQQWCADLQTLDTMQPIERKRQGYIHELIQTEERYMADLQLVVE 122

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           C V A+YD+      EL F +G +I V ++ D  WW GEI    GLFP+ Y+
Sbjct: 19  CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 70

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALYDF P+  GEL F+ GD+IT+T++ D++W+ G +    G FP  Y+
Sbjct: 11  RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          + IA +D+ A  EDELSF K Q++ ++N +DD +W++ E++G  GL PSNY++M
Sbjct: 36 QVIAMYDYAANNEDELSFSKGQLINVMN-KDDPDWWQGEINGVTGLFPSNYVKM 88

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           C V A+YD+      EL F +G +I V ++ D  WW GEI    GLFP+ Y+
Sbjct: 35  CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALYDF P+  GEL F+ GD+IT+T++ D++W+ G +  + G FP  Y+
Sbjct: 15  RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYV 63

>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala, Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The Pqpyeeipi Peptide Length = 103

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLR 111
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV          V H+K+ +
Sbjct: 3   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRK 62
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 63  LDSGGFYITSRTQFSSLQQLVAYY 86

>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala, Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The Pqpyeeipi Peptide Length = 103

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLR 290
           +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV          V H+K+ +
Sbjct: 3   EWYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRK 62
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++    +F+SL +LV Y+
Sbjct: 63  LDSGGFYITSRTQFSSLQQLVAYY 86

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           C V  +YD+T Q   EL F +G +I V ++ D  WW GE+  + GLFP+ Y+
Sbjct: 3   CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV 54

>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor 1 (Ostf1) Length = 68

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALY F P+ P EL F  GD+I +TD SD +WW G    R GL P+ Y+
Sbjct: 11  RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59

>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3 Length = 68

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + LYDF P+  GEL F+ GD+IT+T++ D++W+ G I    G FP  Y+
Sbjct: 7   RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYV 55

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED---- 211
           + +ALY F P+ P EL    GD+I +TD SD +WW G    R GL P+ Y+    +    
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAESIDN 75
Query: 212 ---------DMNWYRAELDGKEGL 226
                    +++W R  LD + G+
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGV 99

>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor Length = 58

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALY F P+ P EL F  GD+I +TD SD +WW G    R GL P+ Y+
Sbjct: 7   RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 50/316 (15%)
Query: 46  GLIPSNYIEMKNH-DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSD 102
           G+  S   +  NH  +++G ITR +AE  L      +G +L+R S +  G F+LSV    
Sbjct: 1   GMASSGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGR 60
Query: 103 GVQHFKVLRDSSGKFFLWVVKFN-SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY 161
              H+ + R+ +G + +   + + S  +L  YH     S+  D  +       CL++  +
Sbjct: 61  KAHHYTIERELNGTYAIAGGRTHASPADLCHYH-----SQESDGLV-------CLLKKPF 108
Query: 162 DFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAE 219
           +  PQ  +P    F       + +   Q W        +G      I++ +  +      
Sbjct: 109 N-RPQGVQPKTGPFEDLKENLIREYVKQTW------NLQGQALEQAIISQKPQL------ 155
Query: 220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV 277
               E LI +   E     W++G+I+R ++E+  L+ +K  G FLIR  +++ G ++L +
Sbjct: 156 ----EKLIATTAHE--KMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCL 208
Query: 278 KCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDM-VP-EEC 334
                V H+++ +D +GK  +    KF++L +LVE++     S   D  LR + VP ++ 
Sbjct: 209 LHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHY-----SYKADGLLRVLTVPCQKI 263
Query: 335 LVQALYDFT--PQEPG 348
             Q   +F   PQ PG
Sbjct: 264 GTQGNVNFGGRPQLPG 279

>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain Length = 113

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++E LL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 5   EWYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 65  LDSGGFYITSRTQFSSLQQLVAYY 88

>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain Length = 113

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
           +WY+G+ITR ++E LL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 5   EWYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++    +F+SL +LV Y+
Sbjct: 65  LDSGGFYITSRTQFSSLQQLVAYY 88

>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 59  DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 111
           +WY+G+ITR ++E LL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 5   EWYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 112 DSSGKFFLWV-VKFNSLNELVEYH 134
             SG F++    +F+SL +LV Y+
Sbjct: 65  LDSGGFYITSRTQFSSLQQLVAYY 88

>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted Phosphopeptide Complex Length = 113

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query: 238 DWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLR 290
           +WY+G+ITR ++E LL N     G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 5   EWYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 64
Query: 291 DSSGKFFLWV-VKFNSLNELVEYH 313
             SG F++    +F+SL +LV Y+
Sbjct: 65  LDSGGFYITSRTQFSSLQQLVAYY 88

>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural Diversity Near The Rt-Src And N-Src Loop Length = 71

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMK 56
          E IAK++F+ TAE +L F K  VL I+ +  D NWY+A+   G+EG+IP+NY++ +
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68

>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src Kinase Complexed With A Peptide From The Tyrosine Phosphatase Pep Length = 83

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMK 56
          E IAK++F+ TAE +L F K  VL I+ +  D NWY+A+   G+EG+IP+NY++ +
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68

>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + PGE+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A Phosphotyrosyl Peptide, Minimized Average Structure Length = 106

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 10/96 (10%)
Query: 55  MKNHDWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHF 107
           ++  +WY+G++ R DAER LLS     G FLIR SE++ G +SLS++       D V+H+
Sbjct: 2   IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 108 KVLR-DSSGKFFLWVVKFNSLNELVEYH--RTASVS 140
           K+ + D+ G +     +F +L +LV+++  R A +S
Sbjct: 62  KIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLS 97

>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A Phosphotyrosyl Peptide, Minimized Average Structure Length = 106

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 10/96 (10%)
Query: 234 MKNHDWYYGRITRADAER-LLS-NKHEGAFLIRVSESSPGDFSLSVK-----CSDGVQHF 286
           ++  +WY+G++ R DAER LLS     G FLIR SE++ G +SLS++       D V+H+
Sbjct: 2   IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61
Query: 287 KVLR-DSSGKFFLWVVKFNSLNELVEYH--RTASVS 319
           K+ + D+ G +     +F +L +LV+++  R A +S
Sbjct: 62  KIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLS 97

>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel Interaction Between Vav2 And Arap3 Length = 122

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
           PS  I+   + W+ G + R   + LL +   G +LIR   +    F++S+K +D V+H K
Sbjct: 13  PSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIK 72
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS 142
           V+   +        KF+SL ELVEY++  S+  S
Sbjct: 73  VVEKDNWIHITEAKKFDSLLELVEYYQCHSLKES 106

>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel Interaction Between Vav2 And Arap3 Length = 122

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
           PS  I+   + W+ G + R   + LL +   G +LIR   +    F++S+K +D V+H K
Sbjct: 13  PSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIK 72
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS 321
           V+   +        KF+SL ELVEY++  S+  S
Sbjct: 73  VVEKDNWIHITEAKKFDSLLELVEYYQCHSLKES 106

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALY F PQE  +LE R GD+IT+ + S++ WW G+I  R G FPA ++
Sbjct: 12  ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALYDF   E  EL F+ G++ITV D SD +WW GE     GLFP+ ++
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57

>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The Distal Loop Length = 62

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+G R+G  PA Y+  ++
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKLD 62

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 143/312 (45%), Gaps = 50/312 (16%)
Query: 50  SNYIEMKNH-DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
           S   +  NH  +++G ITR +AE  L      +G +L+R S +  G F+LSV       H
Sbjct: 4   SGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHH 63
Query: 107 FKVLRDSSGKFFLWVVKFN-SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTP 165
           + + R+ +G + +   + + S  +L  YH     S+  D  +       CL++  ++  P
Sbjct: 64  YTIERELNGTYAIAGGRTHASPADLCHYH-----SQESDGLV-------CLLKKPFN-RP 110
Query: 166 Q--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGK 223
           Q  +P    F       + +   Q W        +G      I++ +  +          
Sbjct: 111 QGVQPKTGPFEDLKENLIREYVKQTW------NLQGQALEQAIISQKPQL---------- 154
Query: 224 EGLIPSNYIEMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSD 281
           E LI +   E     W++G+I+R ++E+  L+ +K  G FLIR  +++ G ++L +    
Sbjct: 155 EKLIATTAHE--KMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEG 211
Query: 282 GVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDM-VP-EECLVQA 338
            V H+++ +D +GK  +    KF++L +LVE++     S   D  LR + VP ++   Q 
Sbjct: 212 KVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHY-----SYKADGLLRVLTVPCQKIGTQG 266
Query: 339 LYDFT--PQEPG 348
             +F   PQ PG
Sbjct: 267 NVNFGGRPQLPG 278

>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine Kinase Complexed With The 11 Residue Phosphotyrosyl Peptide Epqpyeeipiyl Length = 109

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 10  WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 68
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 69  LDNGGFYISPRITFPGLHELVRHYTNAS 96

>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine Kinase Complexed With The 11 Residue Phosphotyrosyl Peptide Epqpyeeipiyl Length = 109

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 10  WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 68
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 69  LDNGGFYISPRITFPGLHELVRHYTNAS 96

>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei Peptide) Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 6   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 64
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 65  LDNGGFYISPRITFPGLHELVRHYTNAS 92

>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei Peptide) Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 6   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 64
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 65  LDNGGFYISPRITFPGLHELVRHYTNAS 92

>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg Peptide) Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 5   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS 91

>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg Peptide) Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 5   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS 91

>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex Length = 108

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 9   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 67
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 68  LDNGGFYISPRITFPGLHELVRHYTNAS 95

>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex Length = 108

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 9   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 67
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 68  LDNGGFYISPRITFPGLHELVRHYTNAS 95

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+A+YDF   E  EL F+ G++ITV D SD +WW GE     GLFP+ ++
Sbjct: 20  VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69

>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain Length = 103

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 4   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 62
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 63  LDNGGFYISPRITFPGLHELVRHYTNAS 90

>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain Length = 103

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 4   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 62
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 63  LDNGGFYISPRITFPGLHELVRHYTNAS 90

>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length = 62

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYV 58

>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr Peptide Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 55  MKNHDWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           M +  W++  IT  +AE LL  +  +G+FL R S+S+PGDF+LSV+ +  V H K+   +
Sbjct: 4   MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI--QN 61
Query: 114 SGKFF--LWVVKFNSLNELVEYH 134
           +G ++      KF +L ELV+Y+
Sbjct: 62  TGDYYDLYGGEKFATLAELVQYY 84

>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With Rlnpyaqlwhr Peptide Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 234 MKNHDWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           M +  W++  IT  +AE LL  +  +G+FL R S+S+PGDF+LSV+ +  V H K+   +
Sbjct: 4   MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI--QN 61
Query: 293 SGKFF--LWVVKFNSLNELVEYH 313
           +G ++      KF +L ELV+Y+
Sbjct: 62  TGDYYDLYGGEKFATLAELVQYY 84

>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To The Chain C- Terminal Length = 73

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++   + 
Sbjct: 7   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 66
Query: 216 YRAELDG 222
            R  L G
Sbjct: 67  SRENLGG 73

>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma Regulatory Region And Mechanism Of Autoinhibition And Activation Based On Key Roles Of Sh2 Domains Length = 246

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 96/295 (32%)
Query: 57  NHDWYYGRIT-----RADAERLLS------NKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 105
           N  W++G++      R  AERLL+         +G+FL+R SE+  GD++LS   +  VQ
Sbjct: 3   NEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQ 62
Query: 106 HFKV-LRDSSG--KFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY 161
           H ++  R  +G  KFFL   + F+SL +L+ +++               VP  C      
Sbjct: 63  HCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQ--------------QVPLRC------ 102
Query: 162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELD 221
                   E E R  + +  T                         N  +   WY A L 
Sbjct: 103 -------NEFEMRLSEPVPQT-------------------------NAHESKEWYHASL- 129
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS 280
                                  TRA AE +L     +GAFL+R   + P  +++S +  
Sbjct: 130 -----------------------TRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAE 165
Query: 281 DGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
             ++H +V ++      L   +F+SL +L+ Y+    + R   +KLR  + EE L
Sbjct: 166 GKIKHCRVQQEGQ-TVMLGNSEFDSLVDLISYYEKHPLYRK--MKLRYPINEEAL 217

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI---LNMEDD 212
           V+ALYDF   E  EL F+ G++I V D SD +WW GE     GLFP+ ++   LN+E +
Sbjct: 20  VRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE 78

>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide Length = 98

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 3   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 61
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 62  LDNGGFYISPRITFPGLHELVRHYTNAS 89

>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With Phosphopeptide Length = 98

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SES+ G FSLSV+  D      V+H+K+  
Sbjct: 3   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRN 61
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 62  LDNGGFYISPRITFPGLHELVRHYTNAS 89

>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant Length = 57

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++
Sbjct: 3   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKLD 57

>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk Kinase Bound To A Dually Tyrosine-Phosphorylated Itam Length = 254

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 125/266 (46%), Gaps = 41/266 (15%)
Query: 57  NH-DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           NH  +++G ITR +AE  L      +G +L+R S +  G F+LSV       H+ + R+ 
Sbjct: 3   NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIEREL 62
Query: 114 SGKFFLWVVKFN-SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQ--EPGE 170
           +G + +   + + S  +L  YH     S+  D  +       CL++  ++  PQ  +P  
Sbjct: 63  NGTYAIAGGRTHASPADLCHYH-----SQESDGLV-------CLLKKPFN-RPQGVQPKT 109
Query: 171 LEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSN 230
             F       + +   Q W        +G      I++ +  +          E LI + 
Sbjct: 110 GPFEDLKENLIREYVKQTW------NLQGQALEQAIISQKPQL----------EKLIATT 153
Query: 231 YIEMKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
             E     W++G+I+R ++E+  L+ +K  G FLIR  +++ G ++L +     V H+++
Sbjct: 154 AHE--KMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRI 210
Query: 289 LRDSSGKFFLW-VVKFNSLNELVEYH 313
            +D +GK  +    KF++L +LVE++
Sbjct: 211 DKDKTGKLSIPEGKKFDTLWQLVEHY 236

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
            +ALYDF   E  EL FR G+V+ V D S+  WW G +  + GLFPA Y+  M
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56

>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide Phosphotyrosine Mimetic Length = 104

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SES+ G F LSV+  D      V+H+K+  
Sbjct: 5   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRN 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS 91

>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide Phosphotyrosine Mimetic Length = 104

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SES+ G F LSV+  D      V+H+K+  
Sbjct: 5   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRN 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS 91

>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 7 Length = 57

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++
Sbjct: 3   LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 57

>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino- Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase Length = 101

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 60  WYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++  IT  +AE LL  +  +G+FL R S+S+PGDF+LSV+ +  V H K+   ++G ++
Sbjct: 4   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI--QNTGDYY 61
Query: 119 --LWVVKFNSLNELVEYH 134
                 KF +L ELV+Y+
Sbjct: 62  DLYGGEKFATLAELVQYY 79

>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino- Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase Length = 101

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 239 WYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           W++  IT  +AE LL  +  +G+FL R S+S+PGDF+LSV+ +  V H K+   ++G ++
Sbjct: 4   WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKI--QNTGDYY 61
Query: 298 --LWVVKFNSLNELVEYH 313
                 KF +L ELV+Y+
Sbjct: 62  DLYGGEKFATLAELVQYY 79

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
            +ALYDF   E  EL FR G+V+ V D S+  WW G +  + GLFPA Y+  M
Sbjct: 6   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 58

>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1 Length = 246

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 96/295 (32%)
Query: 57  NHDWYYGRIT-----RADAERLLS------NKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 105
           N  W++G++      R  AERLL+         +G+FL+R SE+  GD++LS   +  VQ
Sbjct: 3   NEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQ 62
Query: 106 HFKV-LRDSSG--KFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY 161
           H ++  R  +G  KFFL   + F+SL +L+ +++               VP  C      
Sbjct: 63  HCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQ--------------QVPLRC------ 102
Query: 162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELD 221
                   E E R  + +  T                         N  +   WY A L 
Sbjct: 103 -------NEFEMRLSEPVPQT-------------------------NAHESKEWYHASL- 129
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS 280
                                  TRA AE +L     +GAFL+R   + P  +++S +  
Sbjct: 130 -----------------------TRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAE 165
Query: 281 DGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
             ++H +V ++      L   +F+SL +L+ Y+    + R   +KLR  + EE L
Sbjct: 166 GKIKHCRVQQEGQ-TVMLGNSEFDSLVDLISYYEKHPLYRK--MKLRYPINEEAL 217

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
            +ALYDF   E  EL FR G+V+ V D S+  WW G +  + GLFPA Y+  M
Sbjct: 8   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 60

>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 4. Length = 62

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA+Y+
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYV 58

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
            +ALYDF   E  EL FR G+V+ V D S+  WW G +  + GLFPA Y+  M
Sbjct: 5   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 57

>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20 Structures Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 8/104 (7%)
Query: 55  MKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHF 107
           M+  +W++  I+R DAER  L      G+F+IR SE++ G +SLSV     +  D V+H+
Sbjct: 1   METEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           K+    +G F++     F++L ELV++++  +    Q + +  M
Sbjct: 61  KIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 104

>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20 Structures Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 8/104 (7%)
Query: 234 MKNHDWYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSV-----KCSDGVQHF 286
           M+  +W++  I+R DAER  L      G+F+IR SE++ G +SLSV     +  D V+H+
Sbjct: 1   METEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHY 60
Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           K+    +G F++     F++L ELV++++  +    Q + +  M
Sbjct: 61  KIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCM 104

>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective, Nonpeptide Src Sh2 Inhibitor With In Vivo Anti-Resorptive Activity Length = 104

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 60  WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           W++  ++R DAER L    N H G+FLIR SES+ G F LSV+  D      V+H+K+  
Sbjct: 5   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRN 63
Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             +G F++   + F  L+ELV ++  AS
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS 91

>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective, Nonpeptide Src Sh2 Inhibitor With In Vivo Anti-Resorptive Activity Length = 104

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 239 WYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           W++  ++R DAER L    N H G+FLIR SES+ G F LSV+  D      V+H+K+  
Sbjct: 5   WFFKNLSRKDAERQLLAPGNTH-GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRN 63
Query: 291 DSSGKFFLWV-VKFNSLNELVEYHRTAS 317
             +G F++   + F  L+ELV ++  AS
Sbjct: 64  LDNGGFYISPRITFPGLHELVRHYTNAS 91

>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The Distal Loop Length = 62

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKLD 62

>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras Gtpase-Activating Protein 1 Length = 119

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 60  WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++G+I++ +A  LL    +  +FL+R S+++PGD+SL  + ++ +Q FK+    + +F 
Sbjct: 18  WFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFM 77
Query: 119 LWVVKFNSLNELVEYHRTASV 139
           +    +NS+ ++++++R   +
Sbjct: 78  MGGRYYNSIGDIIDHYRKEQI 98

>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras Gtpase-Activating Protein 1 Length = 119

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 239 WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           W++G+I++ +A  LL    +  +FL+R S+++PGD+SL  + ++ +Q FK+    + +F 
Sbjct: 18  WFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFM 77
Query: 298 LWVVKFNSLNELVEYHRTASV 318
           +    +NS+ ++++++R   +
Sbjct: 78  MGGRYYNSIGDIIDHYRKEQI 98

>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A Syk-Derived Doubly Phosphorylated Peptide Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           ++  H WY G + RA AE +L+N+ +G FL+R       +F++S+K +  V+H K++  +
Sbjct: 5   DLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TA 63
Query: 114 SGKFFLWVVK-FNSLNELVEYHRTASV 139
            G + +   K F  L ELVE+++  S+
Sbjct: 64  EGLYRITEKKAFRGLTELVEFYQQNSL 90

>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A Syk-Derived Doubly Phosphorylated Peptide Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           ++  H WY G + RA AE +L+N+ +G FL+R       +F++S+K +  V+H K++  +
Sbjct: 5   DLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TA 63
Query: 293 SGKFFLWVVK-FNSLNELVEYHRTASV 318
            G + +   K F  L ELVE+++  S+
Sbjct: 64  EGLYRITEKKAFRGLTELVEFYQQNSL 90

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 58  HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           H WY G + RA AE +L+N+ +G FL+R       +F++S+K +  V+H K++  + G +
Sbjct: 26  HLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TAEGLY 84
Query: 118 FLWVVK-FNSLNELVEYHRTASV 139
            +   K F  L ELVE+++  S+
Sbjct: 85  RITEKKAFRGLTELVEFYQQNSL 107

>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto- Oncogene Protein Vav1 Length = 138

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           H WY G + RA AE +L+N+ +G FL+R       +F++S+K +  V+H K++  + G +
Sbjct: 26  HLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TAEGLY 84
Query: 297 FLWVVK-FNSLNELVEYHRTASV 318
            +   K F  L ELVE+++  S+
Sbjct: 85  RITEKKAFRGLTELVEFYQQNSL 107

>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold Determination For Small Well-Folded Proteins In Less Than A Day Length = 63

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain Length = 62

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d Protein Length = 119

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 59  DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           +W++G I+R DAE LL ++  G+FLIRVS S  G ++LS K      HF V     G F 
Sbjct: 17  EWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFM 75
Query: 119 L--WVVKFNSLNELVEYHRTASVSRSQDV 145
           +    V   SL+ LV +H+   +   +++
Sbjct: 76  IPGEKVAHTSLDALVTFHQQKPIEPRREL 104

>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d Protein Length = 119

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 238 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           +W++G I+R DAE LL ++  G+FLIRVS S  G ++LS K      HF V     G F 
Sbjct: 17  EWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFM 75
Query: 298 L--WVVKFNSLNELVEYHRTASVSRSQDV 324
           +    V   SL+ LV +H+   +   +++
Sbjct: 76  IPGEKVAHTSLDALVTFHQQKPIEPRREL 104

>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of Its Circular Permutants With Different Loop Lengths: Discerning The Reasons For Rapid Folding In Proteins Length = 61

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 7   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57

>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein Vav-2 Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 53  IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
           I+   + W+ G + R   + LL +   G +LIR   +    F++S+K +D V+H KV+  
Sbjct: 11  IDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK 70
Query: 113 SSGKFFLWVVKFNSLNELVEYHRTASVSRS 142
            +        KF+SL ELVEY++  S+  S
Sbjct: 71  DNWIHITEAKKFDSLLELVEYYQCHSLKES 100

>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein Vav-2 Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 232 IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
           I+   + W+ G + R   + LL +   G +LIR   +    F++S+K +D V+H KV+  
Sbjct: 11  IDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK 70
Query: 292 SSGKFFLWVVKFNSLNELVEYHRTASVSRS 321
            +        KF+SL ELVEY++  S+  S
Sbjct: 71  DNWIHITEAKKFDSLLELVEYYQCHSLKES 100

>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant Length = 62

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYV 58

>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant Length = 62

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV  LYD+  + P EL  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYL 58

>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain Mutant With A Redesigned Core Length = 62

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV  LYD+  + P EL  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58

>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of P85beta And The Drug Gdc-0941 Length = 302

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY G+I R  AE +LS K +G FLIR S S  G ++ SV      +H  + R ++G  F 
Sbjct: 196 WYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFA 254
Query: 120 WVVK-FNSLNELVEYHRTASVSRSQDV 145
                + SL ELV +++ AS+ +  D 
Sbjct: 255 EPYNLYGSLKELVLHYQHASLVQHNDA 281

>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of P85beta And The Drug Gdc-0941 Length = 302

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY G+I R  AE +LS K +G FLIR S S  G ++ SV      +H  + R ++G  F 
Sbjct: 196 WYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFA 254
Query: 299 WVVK-FNSLNELVEYHRTASVSRSQDV 324
                + SL ELV +++ AS+ +  D 
Sbjct: 255 EPYNLYGSLKELVLHYQHASLVQHNDA 281

>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 226

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 117/292 (40%), Gaps = 96/292 (32%)
Query: 60  WYYGRIT-----RADAERLLS------NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
           W++G++      R  AERLL+         +G+FL+R SE+  GD++LS   +  VQH +
Sbjct: 6   WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCR 65
Query: 109 V-LRDSSG--KFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFT 164
           +  R  +G  KFFL   + F+SL +L+ +++               VP  C         
Sbjct: 66  IHSRQDAGTPKFFLTDNLVFDSLYDLITHYQ--------------QVPLRC--------- 102
Query: 165 PQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKE 224
                E E R  + +  T                         N  +   WY A L    
Sbjct: 103 ----NEFEMRLSEPVPQT-------------------------NAHESKEWYHASL---- 129
Query: 225 GLIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGV 283
                               TRA AE +L     +GAFL+R   + P  +++S +    +
Sbjct: 130 --------------------TRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKI 168
Query: 284 QHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
           +H +V ++      L   +F+SL +L+ Y+    + R   +KLR  + EE L
Sbjct: 169 KHCRVQQEGQ-TVMLGNSEFDSLVDLISYYEKHPLYRK--MKLRYPINEEAL 217

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 60  WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           ++YG I+RA+AE    L+   +G FL+R    S G + LS+       HF + R  +G +
Sbjct: 10  FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 69
Query: 118 FLWVVKFNS-LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
            +   K +    EL E++     SR  D  L   + + C   +     PQ PG  +  R 
Sbjct: 70  AIAGGKAHCGPAELCEFY-----SRDPD-GLPCNLRKPCNRPS--GLEPQ-PGVFDCLRD 120
Query: 177 DVITVTDRSDQHW-WHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
            +  V D   Q W   GE   +  +  A  +                 E LI +   E  
Sbjct: 121 AM--VRDYVRQTWKLEGEALEQAIISQAPQV-----------------EKLIATTAHE-- 159
Query: 236 NHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
              WY+  +TR +AER L    + +G FL+R  +   G ++LS+     V H+ + +D +
Sbjct: 160 RMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLISQDKA 218
Query: 294 GKFFLW-VVKFNSLNELVEY 312
           GK+ +    KF++L +LVEY
Sbjct: 219 GKYCIPEGTKFDTLWQLVEY 238

>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant Length = 62

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKKLD 62

>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled Sh3- Domain Of Alpha-Chicken Spectrin Length = 83

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 19  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 69

>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l Mutations Length = 62

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV  LYD+  + P EL  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYL 58

>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Intersectin 2(Kiaa1256) Length = 69

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALY ++  EPG+L F  G+ I VT + D  WW G IG R G+FP+ Y+
Sbjct: 13  ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYV 59

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMKN 57
           +A +D+ A   ++LSF+K +  +I+N   + +W+ A     GK G IPSNY+     ++ 
Sbjct: 31  VALYDYEARTTEDLSFKKGERFQIIN-NTEGDWWEARSIATGKSGYIPSNYVVPADSIQA 89
Query: 58  HDWYYGRITRADAE 71
            +WY+G++ R DAE
Sbjct: 90  EEWYFGKMGRKDAE 103

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 28/96 (29%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           ALYD+  +   +L F++G+   + + ++  WW                          R+
Sbjct: 32  ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEA------------------------RS 67
Query: 219 ELDGKEGLIPSNYI----EMKNHDWYYGRITRADAE 250
              GK G IPSNY+     ++  +WY+G++ R DAE
Sbjct: 68  IATGKSGYIPSNYVVPADSIQAEEWYFGKMGRKDAE 103

>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene Tyrosine- Protein Kinase Fer From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr3461d Length = 116

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 55  MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           +   DWY+G I R +A+ LL  K +G FL+R S   PG++ LSV  SDG +   +++   
Sbjct: 14  LAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVY-SDGQRRHFIIQYVD 70
Query: 115 GKFFLWVVKFNSLNELVEYHRTAS--VSRSQDVKLRDMVPEE 154
             +      F+++ +L+++H T    +++   V L + +P++
Sbjct: 71  NMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112

>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene Tyrosine- Protein Kinase Fer From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr3461d Length = 116

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           +   DWY+G I R +A+ LL  K +G FL+R S   PG++ LSV  SDG +   +++   
Sbjct: 14  LAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVY-SDGQRRHFIIQYVD 70
Query: 294 GKFFLWVVKFNSLNELVEYHRTAS--VSRSQDVKLRDMVPEE 333
             +      F+++ +L+++H T    +++   V L + +P++
Sbjct: 71  NMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112

>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70 Length = 259

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 60  WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           ++YG I+RA+AE    L+   +G FL+R    S G + LS+       HF + R  +G +
Sbjct: 13  FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 72
Query: 118 FLWVVKFNS-LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
            +   K +    EL E++     SR  D  L   + + C   +     PQ PG  +  R 
Sbjct: 73  AIAGGKAHCGPAELCEFY-----SRDPD-GLPCNLRKPCNRPS--GLEPQ-PGVFDCLRD 123
Query: 177 DVITVTDRSDQHW-WHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
            +  V D   Q W   GE   +  +  A  +                 E LI +   E  
Sbjct: 124 AM--VRDYVRQTWKLEGEALEQAIISQAPQV-----------------EKLIATTAHE-- 162
Query: 236 NHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
              WY+  +TR +AER L    + +G FL+R  +   G ++LS+     V H+ + +D +
Sbjct: 163 RMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLISQDKA 221
Query: 294 GKFFLW-VVKFNSLNELVEY 312
           GK+ +    KF++L +LVEY
Sbjct: 222 GKYCIPEGTKFDTLWQLVEY 241

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           L +ALY F  ++  EL   +GD++ + ++ ++ WW G +  +KG FPA Y+
Sbjct: 9   LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           V+ALYD+  Q   EL F+ GD I V  +    WW GE+  ++G  PA Y+ ++
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           V+ALYD+  Q   EL F+ GD I V  +    WW GE+  ++G  PA Y+ ++
Sbjct: 7   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59

>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide Length = 254

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 36/259 (13%)
Query: 60  WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           ++YG I+RA+AE    L+   +G FL+R    S G + LS+       HF + R  +G +
Sbjct: 8   FFYGSISRAEAEEHLKLAGXADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 67
Query: 118 FLWVVKFNS-LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
            +   K +    EL E++     SR  D  L   + + C            P  LE + G
Sbjct: 68  AIAGGKAHCGPAELCEFY-----SRDPD-GLPCNLRKPC----------NRPSGLEPQPG 111
Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 236
               + D   + +              T+ L  E       ++    E LI +   E   
Sbjct: 112 VFDCLRDAXVRDYVR-----------QTWKLEGEALEQAIISQAPQVEKLIATTAHE--R 158
Query: 237 HDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
             WY+  +TR +AER L    + +G FL+R  +   G ++LS+     V H+ + +D +G
Sbjct: 159 XPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQ-GTYALSLIYGKTVYHYLISQDKAG 217
Query: 295 KFFLW-VVKFNSLNELVEY 312
           K+ +    KF++L +LVEY
Sbjct: 218 KYCIPEGTKFDTLWQLVEY 236

>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of Cd2ap Length = 60

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           + L+D++PQ   ELE   GDVI V +  ++ WW G +  + GLFP+ ++  +E
Sbjct: 8   KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60

>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants Length = 62

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV  LYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 8   LVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYL 58

>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy Length = 109

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
           WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 51

>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy Length = 109

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
           WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 51

>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
           WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +
Sbjct: 12  WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 61

>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase Length = 124

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
           WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +
Sbjct: 12  WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII 61

>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant Length = 62

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           LV  LYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++
Sbjct: 8   LVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKKLD 62

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A A++DF A    ELS ++  ++KILN +    W+R E+ G+ G  PSNY+E
Sbjct: 8  AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59

>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of Alpha Spectrin Sh3 Domain Length = 57

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           LV ALYD+  +   E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++
Sbjct: 3   LVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 57

>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like Protein Length = 111

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  +  V H+ +    + +F +
Sbjct: 21  WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 80
Query: 120 WVVKFNSLNELVEYHR 135
              +F+ L  L+E+++
Sbjct: 81  GDQEFDHLPALLEFYK 96

>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like Protein Length = 111

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  +  V H+ +    + +F +
Sbjct: 21  WYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKI 80
Query: 299 WVVKFNSLNELVEYHR 314
              +F+ L  L+E+++
Sbjct: 81  GDQEFDHLPALLEFYK 96

>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures Length = 114

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 60  WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVK--CSDG--VQHFKVLR-D 112
           W++  I+R DAER  L      G+FLIR SES+ G FSLSVK   + G  V+H+K+   D
Sbjct: 14  WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLD 73
Query: 113 SSGKFFLWVVKFNSLNELVEYH 134
           + G +    + F +L  LV+++
Sbjct: 74  NGGYYISPRITFPTLQALVQHY 95

>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures Length = 114

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 239 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVK--CSDG--VQHFKVLR-D 291
           W++  I+R DAER  L      G+FLIR SES+ G FSLSVK   + G  V+H+K+   D
Sbjct: 14  WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLD 73
Query: 292 SSGKFFLWVVKFNSLNELVEYH 313
           + G +    + F +L  LV+++
Sbjct: 74  NGGYYISPRITFPTLQALVQHY 95

>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3 Length = 58

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALY F PQ+ G+L  + GD + + ++    W+ G    R G+FPA Y+
Sbjct: 5   VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54

>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 46  GLIP-SNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD 102
           GL+P  +++  ++  W++ +I+R +A+RL+  +   +G FL+R S+S+P  F LS+    
Sbjct: 13  GLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQ 72
Query: 103 GVQHFKVLR-DSSGKFFLWV----VKFNSLNELVEYHR 135
            ++HF+++  +  G+ F  +     +F  L +LVE+++
Sbjct: 73  KIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQ 110

>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 225 GLIP-SNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD 281
           GL+P  +++  ++  W++ +I+R +A+RL+  +   +G FL+R S+S+P  F LS+    
Sbjct: 13  GLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQ 72
Query: 282 GVQHFKVLR-DSSGKFFLWV----VKFNSLNELVEYHR 314
            ++HF+++  +  G+ F  +     +F  L +LVE+++
Sbjct: 73  KIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQ 110

>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex With A 10 Amino Acid Peptide Py1139 Length = 120

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 60  WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL-RDSSGK 116
           W++GRI+R +++RL+  +   +G FL+R S+ +P  F LS+     V+H+ +L  +  G+
Sbjct: 19  WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 78
Query: 117 FFLWV----VKFNSLNELVEYHR 135
            +  +     +F  L +LVE+H+
Sbjct: 79  LYFSMDDGQTRFTDLLQLVEFHQ 101

>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex With A 10 Amino Acid Peptide Py1139 Length = 120

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 239 WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL-RDSSGK 295
           W++GRI+R +++RL+  +   +G FL+R S+ +P  F LS+     V+H+ +L  +  G+
Sbjct: 19  WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 78
Query: 296 FFLWV----VKFNSLNELVEYHR 314
            +  +     +F  L +LVE+H+
Sbjct: 79  LYFSMDDGQTRFTDLLQLVEFHQ 101

>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse Sh3 Domain Containing Ring Finger 2 Length = 68

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +AL ++  + PG+L+F +GDVI +  + D++W+ GEI    G+FPA+ +
Sbjct: 11  KALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59

>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide Length = 117

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 60  WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL-RDSSGK 116
           W++GRI+R +++RL+  +   +G FL+R S+ +P  F LS+     V+H+ +L  +  G+
Sbjct: 16  WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 75
Query: 117 FFLWV----VKFNSLNELVEYHR 135
            +  +     +F  L +LVE+H+
Sbjct: 76  LYFSMDDGQTRFTDLLQLVEFHQ 98

>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide Length = 117

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 239 WYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL-RDSSGK 295
           W++GRI+R +++RL+  +   +G FL+R S+ +P  F LS+     V+H+ +L  +  G+
Sbjct: 16  WFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGR 75
Query: 296 FFLWV----VKFNSLNELVEYHR 314
            +  +     +F  L +LVE+H+
Sbjct: 76  LYFSMDDGQTRFTDLLQLVEFHQ 98

>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine Nucleotide Exchange Factor 9 Length = 81

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI---LNMEDDM 213
           +A++D       EL F+ GDVI V D S++ WW G+I   +G FPA+++   +N ED++
Sbjct: 14  EAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEV 72

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 147 LRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + D    + +V+A ++F      EL F +GDVI VT   +  WW G +  R G FP+ Y+
Sbjct: 1   MTDNSNNQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60

>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1 Domain Containing 3 Length = 78

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +AL DF   +  EL FR+ D+IT+  + D+H W GE+   +G FPA ++
Sbjct: 10  AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFV 59

>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain From Human Cd2ap (Cms) In Complex With A Proline-Rich Peptide From Human Rin3 Length = 65

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           + L+++ PQ   ELE + GD+I + +  ++ WW G +  + GLFP+ ++  +E
Sbjct: 11  KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE 63

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
          + AIA +D+ A  +DE+SF    ++  + M DD  W+R    G+ GL P+NY+E++
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVELR 64

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALYD+      E+ F   D+IT  +  D  WW G    R GLFPA Y+
Sbjct: 14  ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V ALYD+T     EL   RGD+I V  + ++ WW+G IG  ++G FPA ++
Sbjct: 9   VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59

>pdb|2KR3|A Chain A, Solution Structure Of Sha-D Length = 70

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--------RKGLFPATYIL 207
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+ A        R+G  PA Y+ 
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVK 67
Query: 208 NME 210
            ++
Sbjct: 68  KLD 70

>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound With A Synthetic Peptide Length = 70

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           QALY +  ++   L F + DVITV ++ D  WW GE+  +KG FP +Y+
Sbjct: 16  QALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYV 63

>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk Length = 163

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 49/202 (24%)
Query: 5   AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGR 64
           A  DFN   +++L F+K  +LKI +  ++  W   ++DGK G+IP  Y+E         R
Sbjct: 6   ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEK-------CR 58
Query: 65  ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKF 124
            + A    L     + +    +    PG ++          +  +    +G F+  V++ 
Sbjct: 59  PSSASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSI------NTPLPNLQNGPFYARVIQK 112
Query: 125 NSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDR 184
              N    Y +TA                                 L    G+++ VT  
Sbjct: 113 RVPN---AYDKTA---------------------------------LALEVGELVKVTKI 136
Query: 185 SDQHWWHGEIGARKGLFPATYI 206
           +    W GE   ++G FP T++
Sbjct: 137 NMSGQWEGECNGKRGHFPFTHV 158

>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk Length = 163

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E +  ++G+ P  Y+
Sbjct: 4   VRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYV 54

>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse Phospholipase C-Gamma 2 Length = 138

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 12/105 (11%)
Query: 60  WYYGRI-TRADAERLL------SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV--- 109
           W++ ++ +R  AE+LL      +   +G FL+R SE+ P D++LS   S  VQH ++   
Sbjct: 24  WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRST 83
Query: 110 LRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQ-DVKLRDMVP 152
           + +   K++L   + FNS+  L++++R A +  ++ +++L D VP
Sbjct: 84  MENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPVP 128

>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse Phospholipase C-Gamma 2 Length = 138

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 12/105 (11%)
Query: 239 WYYGRI-TRADAERLL------SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV--- 288
           W++ ++ +R  AE+LL      +   +G FL+R SE+ P D++LS   S  VQH ++   
Sbjct: 24  WFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRST 83
Query: 289 LRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQ-DVKLRDMVP 331
           + +   K++L   + FNS+  L++++R A +  ++ +++L D VP
Sbjct: 84  MENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFELRLTDPVP 128

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
          + A+A +D+ A  +DE+SF    ++  + M DD  W+R    G+ GL P+NY+E++
Sbjct: 11 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVELR 65

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALYD+      E+ F   D+IT  +  D  WW G    R GLFPA Y+
Sbjct: 15  ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62

>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating Protein 4 Length = 76

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           A + +T +   EL FRRGDV+ + +R+   WW GE    +GL P  YI
Sbjct: 15  ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62

>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Protein Vav-2 Length = 73

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
           A Y+F  ++  EL  R GDV+ +  R   DQ WW GE   R G FP+TY+
Sbjct: 12  ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61

>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1 Length = 68

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +A +DF  Q   EL  ++GD++ +  + DQ+W+ GE   R G+FP TYI
Sbjct: 11  RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59

>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain Length = 119

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 43  GKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCS 101
           G  G++P          W +G ITR+ AE LLS    +G+FL+R SES    ++L V   
Sbjct: 4   GSSGMVPC---------WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYR 54
Query: 102 DGVQHFKVLRDSSGKFFLWVVK------FNSLNELVEYHR 135
           + V  +++L +   KF +   +      F  L++L+E+++
Sbjct: 55  NCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYK 94

>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain Length = 119

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 16/100 (16%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCS 280
           G  G++P          W +G ITR+ AE LLS    +G+FL+R SES    ++L V   
Sbjct: 4   GSSGMVPC---------WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYR 54
Query: 281 DGVQHFKVLRDSSGKFFLWVVK------FNSLNELVEYHR 314
           + V  +++L +   KF +   +      F  L++L+E+++
Sbjct: 55  NCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYK 94

>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide Derived From Polyomavirus Middle T Antigen Length = 111

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
           +N + +++ +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 3   NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
           +        F   + FNS+ EL+ ++R  S+++     DVKL
Sbjct: 63  IFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 104

>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide Derived From Polyomavirus Middle T Antigen Length = 111

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
           +N + +++ +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 3   NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
           +        F   + FNS+ EL+ ++R  S+++     DVKL
Sbjct: 63  IFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 104

>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N- Terminal Src Homology 2 Domain Of Pi3-Kinase Length = 111

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
           +N + +++ +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 3   NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
           +        F   + FNS+ EL+ ++R  S+++     DVKL
Sbjct: 63  IFHRDGKYGFSDSLTFNSVVELINHYRNESLAQYNPKLDVKL 104

>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N- Terminal Src Homology 2 Domain Of Pi3-Kinase Length = 111

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
           +N + +++ +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 3   NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
           +        F   + FNS+ EL+ ++R  S+++     DVKL
Sbjct: 63  IFHRDGKYGFSDSLTFNSVVELINHYRNESLAQYNPKLDVKL 104

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
          + A+A +D+ A  +DE+SF    ++  + M DD  W+R    G+ GL P+NY+E++
Sbjct: 18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVELR 72

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALYD+      E+ F   D+IT  +  D  WW G    R GLFPA Y+
Sbjct: 22  ALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69

>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms Protein Length = 65

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + L+++ PQ   ELE + GD+I + +  ++ WW G +  + GLFP+ ++
Sbjct: 5   KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 53

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            Q  + + PQ   ELE + GD+I V    ++ WW G +  + G+FP+ +I
Sbjct: 10  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59

>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef Length = 116

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +AL+D    +  EL F+ GDVI V D +++ WW G +   +G FPA+++
Sbjct: 40  EALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88

>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2 Domain Length = 120

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
           +N + ++N +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 3   NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
           +        F   + F+S+ EL+ ++R  S+++     DVKL
Sbjct: 63  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 104

>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2 Domain Length = 120

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
           +N + ++N +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 3   NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
           +        F   + F+S+ EL+ ++R  S+++     DVKL
Sbjct: 63  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 104

>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +AL+D    +  EL F+ GDVI V D +++ WW G +   +G FPA+++
Sbjct: 33  AEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82

>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex With Nish2 Of P85alpha And The Drug Wortmannin Length = 373

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
           +N + ++N +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 2   NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
           +        F   + F+S+ EL+ ++R  S+++     DVKL
Sbjct: 62  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 103

>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex With Nish2 Of P85alpha And The Drug Wortmannin Length = 373

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
           +N + ++N +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 2   NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
           +        F   + F+S+ EL+ ++R  S+++     DVKL
Sbjct: 62  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 103

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +DF  Q P EL  ++GD++ +    D++W  GE   R G+FPA Y+
Sbjct: 8   FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53

>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein- Tyrosine Phosphatase Shp-1 Length = 118

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 60  WYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSDG----VQHFKV 109
           WY+G ++   AE LL  K E   FL+R S S PGDF LSV     K   G    V H KV
Sbjct: 8   WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 67
Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS 142
           + +        +  F+SL +LVE+ +   +  +
Sbjct: 68  MCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEA 100

>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein- Tyrosine Phosphatase Shp-1 Length = 118

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 239 WYYGRITRADAERLLSNKHEG-AFLIRVSESSPGDFSLSV-----KCSDG----VQHFKV 288
           WY+G ++   AE LL  K E   FL+R S S PGDF LSV     K   G    V H KV
Sbjct: 8   WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKV 67
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRS 321
           + +        +  F+SL +LVE+ +   +  +
Sbjct: 68  MCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEA 100

>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc Gamma-2 Length = 124

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 60  WYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           WYY R++R +AE +L     +GAFLIR  E +   ++++ +    V+H ++ RD  G+ F
Sbjct: 21  WYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINRD--GRHF 77
Query: 119 LWVVK--FNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 156
           +      F SL ELV Y+   ++ R   ++LR  V  E L
Sbjct: 78  VLGTSAYFESLVELVSYYEKHALYR--KMRLRYPVTPELL 115

>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc Gamma-2 Length = 124

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 8/100 (8%)
Query: 239 WYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           WYY R++R +AE +L     +GAFLIR  E +   ++++ +    V+H ++ RD  G+ F
Sbjct: 21  WYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINRD--GRHF 77
Query: 298 LWVVK--FNSLNELVEYHRTASVSRSQDVKLRDMVPEECL 335
           +      F SL ELV Y+   ++ R   ++LR  V  E L
Sbjct: 78  VLGTSAYFESLVELVSYYEKHALYR--KMRLRYPVTPELL 115

>pdb|3QWY|A Chain A, Ced-2 Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 93/211 (44%), Gaps = 39/211 (18%)
Query: 37  YRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDF 94
           + A + G + +  + +   +   +Y+  ++R +A +LL       G FL+R S S PG++
Sbjct: 20  HMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEY 78
Query: 95  SLSVKCSD---GVQHFKVLR-----DSSGKFFLWVVK--FNSLNELVEYHRTASVSRSQD 144
           SL+V+ +D    V H+ + R     D +    + +    F  +  L+ + +   ++ +  
Sbjct: 79  SLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASL 138
Query: 145 VKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPAT 204
           +        E +V   + FT +   +L F +G+ + +  +++Q WW     AR  L    
Sbjct: 139 LAAYKKPIIEVVV-GTFKFTGERETDLPFEQGERLEILSKTNQDWWE----ARNAL---- 189
Query: 205 YILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
                            G  GL+P+NY++++
Sbjct: 190 -----------------GTTGLVPANYVQIQ 203

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 54  EMKNHDWYYGR-----ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
           E++N   YYGR     I+R  A++LL    EG++LIR S+  PG ++L+++     ++F+
Sbjct: 42  EVENRPKYYGREFHGMISREAADQLLIVA-EGSYLIRESQRQPGTYTLALRFGSQTRNFR 100
Query: 109 VLRDSSGKFFLWVVKFNSLNELV 131
           +  D  GK F+   +F S+++LV
Sbjct: 101 LYYD--GKHFVGEKRFESIHDLV 121

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 233 EMKNHDWYYGR-----ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
           E++N   YYGR     I+R  A++LL    EG++LIR S+  PG ++L+++     ++F+
Sbjct: 42  EVENRPKYYGREFHGMISREAADQLLIVA-EGSYLIRESQRQPGTYTLALRFGSQTRNFR 100
Query: 288 VLRDSSGKFFLWVVKFNSLNELV 310
           +  D  GK F+   +F S+++LV
Sbjct: 101 LYYD--GKHFVGEKRFESIHDLV 121

>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef Length = 482

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +AL+D    +  EL F+ GDVI V D +++ WW G +   +G FPA+++
Sbjct: 70  AEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFV 119

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 161 YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +DF  Q P EL  ++GD++ +    D++W  GE   R G+FPA Y+
Sbjct: 14  FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 59

>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox) Length = 341

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM------ED 211
           +AL+DFT     EL F+ GDVI +  R ++ W  G +    G+FP +++  +      +D
Sbjct: 178 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDD 237
Query: 212 DMNWYRA 218
             NW R 
Sbjct: 238 PTNWLRC 244

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           Q  + + PQ   ELE + GD+I V    ++ WW G +  + G+FP+ +I
Sbjct: 22  QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 70

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
Query: 54  EMKNHDWYYGR-----ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
           E++N   YYGR     I+R  A+ LL    EGA+++R S+  PG ++L+++  +   +++
Sbjct: 46  EVENRPKYYGREFHGIISREQADELLGGV-EGAYILRESQRQPGCYTLALRFGNQTLNYR 104
Query: 109 VLRDSSGKFFLWVVKFNSLNELV 131
           +  D  GK F+   +F S+++LV
Sbjct: 105 LFHD--GKHFVGEKRFESIHDLV 125

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
Query: 233 EMKNHDWYYGR-----ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
           E++N   YYGR     I+R  A+ LL    EGA+++R S+  PG ++L+++  +   +++
Sbjct: 46  EVENRPKYYGREFHGIISREQADELLGGV-EGAYILRESQRQPGCYTLALRFGNQTLNYR 104
Query: 288 VLRDSSGKFFLWVVKFNSLNELV 310
           +  D  GK F+   +F S+++LV
Sbjct: 105 LFHD--GKHFVGEKRFESIHDLV 125

>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine- Protein Kinase ItkTSK Length = 85

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIG 195
           +S S  +D +     PEE +V ALYD+   +P EL  RR +   + D S+ HWW   +  
Sbjct: 2   SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRN 61
Query: 196 ARKGLFPATYIL 207
             +G  P++Y++
Sbjct: 62  GHEGYVPSSYLV 73

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          + +A +D+    EDELSF++  ++ ++   DD  WY   ++G  GL P NY+E
Sbjct: 19 KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDD-GWYEGVMNGVTGLFPGNYVE 70

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V A+YD+T  +  EL F+ G +I V  ++D  W+ G +    GLFP  Y+
Sbjct: 20  VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69

>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From The T-Cell Receptor, Minimized Average Structure Length = 107

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           +++   W++G+++R +AE LL  +  G FL+R S ++PG + L+   S   +H  +L D 
Sbjct: 3   QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGSQSGQPKHL-LLVDP 59
Query: 114 SGKFFLWVVKFNSLNELVEYH 134
            G       +F S++ L+ YH
Sbjct: 60  EGVVRTKDHRFESVSHLISYH 80

>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed With A Tyrosine-Phosphorylated Peptide From The T-Cell Receptor, Minimized Average Structure Length = 107

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           +++   W++G+++R +AE LL  +  G FL+R S ++PG + L+   S   +H  +L D 
Sbjct: 3   QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGSQSGQPKHL-LLVDP 59
Query: 293 SGKFFLWVVKFNSLNELVEYH 313
            G       +F S++ L+ YH
Sbjct: 60  EGVVRTKDHRFESVSHLISYH 80

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIE 54
          A +D++   +DELSF+    L  L  ED+  W R  LD G+ GL P+NY+E
Sbjct: 8  ALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHWWHGEIGARK-GLFPATYI 206
           V+ALYD+  QE  EL F+ GD +T + +  +Q W  G + + + GL+PA Y+
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57

>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From Chicken Length = 70

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--------RKGLFPATYIL 207
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+ A        R+G  PA Y+ 
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVK 67
Query: 208 NME 210
            ++
Sbjct: 68  KLD 70

>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1 Gtpase- Activating Protein Length = 76

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA---RKGLFPATYILNMED 211
           V+ +YD       EL F  G+VI VT   DQ WW G I     RKG+FP +++  + D
Sbjct: 13  VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 70

>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two Phosphotyrosines In Signaling Mediated By Syk Tyrosine Kinase Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 59  DWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           +WY+  +TRA AE +L     +GAFL+R   + P  +++S +    ++H +V ++     
Sbjct: 10  EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQ-TV 67
Query: 118 FLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
            L   +F+SL +L+ Y+    + R   +KLR  + EE
Sbjct: 68  MLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEE 102

>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two Phosphotyrosines In Signaling Mediated By Syk Tyrosine Kinase Length = 105

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 238 DWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           +WY+  +TRA AE +L     +GAFL+R   + P  +++S +    ++H +V ++     
Sbjct: 10  EWYHASLTRAQAEHMLMRVPRDGAFLVR-KRNEPNSYAISFRAEGKIKHCRVQQEGQ-TV 67
Query: 297 FLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
            L   +F+SL +L+ Y+    + R   +KLR  + EE
Sbjct: 68  MLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEE 102

>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase Cgamma Length = 71

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNM 209
           +C V+AL+D+  Q   EL F +  +I   ++ +  WW G+ G +K L FP+ Y+  M
Sbjct: 6   KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM 62

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + +V+A ++F      EL F +GDVI VT   +  WW G    R G FP+ Y+
Sbjct: 6   QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Kiaa0769 Protein Length = 73

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFPATYI 206
           C V+ALYD+  Q   EL F  G +I + ++ +Q    +W GE   R G+FP+  +
Sbjct: 9   CFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63

>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk Homologous Kinase Chk Length = 97

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G+I+  +A + L    +G FL+R S   PGD+ L V     V H++VL         
Sbjct: 6   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 65
Query: 120 WVVKFNSLNELVEYH 134
             V F +L ++VE++
Sbjct: 66  EAVFFCNLMDMVEHY 80

>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk Homologous Kinase Chk Length = 97

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G+I+  +A + L    +G FL+R S   PGD+ L V     V H++VL         
Sbjct: 6   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 65
Query: 299 WVVKFNSLNELVEYH 313
             V F +L ++VE++
Sbjct: 66  EAVFFCNLMDMVEHY 80

>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain Length = 61

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA---RKGLFPATYILNMED 211
           V+ +YD       EL F  G+VI VT   DQ WW G I     RKG+FP +++  + D
Sbjct: 4   VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 61

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           P   +V+A ++F      EL F +GDVI VT   +  WW G    R G FP+ Y+
Sbjct: 2   PLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of Phosphatidylinositol-3-Oh Kinase Length = 104

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 55  MKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           +++ +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K+    
Sbjct: 1   LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
               F   + FNS+ EL+ ++R  S+++     DVKL
Sbjct: 61  GKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 97

>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of Phosphatidylinositol-3-Oh Kinase Length = 104

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           +++ +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K+    
Sbjct: 1   LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRD 60
Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
               F   + FNS+ EL+ ++R  S+++     DVKL
Sbjct: 61  GKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKL 97

>pdb|3QWX|X Chain X, Ced-2 1-174 Length = 174

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 39/188 (20%)
Query: 60  WYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSD---GVQHFKVLR--- 111
           +Y+  ++R +A +LL       G FL+R S S PG++SL+V+ +D    V H+ + R   
Sbjct: 14  FYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEP 72
Query: 112 --DSSGKFFLWVVK--FNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQE 167
             D +    + +    F  +  L+ + +   ++ +  +        E +V   + FT + 
Sbjct: 73  KEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVV-GTFKFTGER 131
Query: 168 PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLI 227
             +L F +G+ + +  +++Q WW     AR  L                     G  GL+
Sbjct: 132 ETDLPFEQGERLEILSKTNQDWWE----ARNAL---------------------GTTGLV 166
Query: 228 PSNYIEMK 235
           P+NY++++
Sbjct: 167 PANYVQIQ 174

>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 108
           +N + +++ +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 2   NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 147
           +        F   + F+S+ EL+ ++R  S+++     DVKL
Sbjct: 62  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 103

>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIR-VSESSPGDFSLSVKCSDGVQHFK 287
           +N + +++ +WY+G I+R +    L +  +G FL+R  S    GD++L+++     +  K
Sbjct: 2   NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKL 326
           +        F   + F+S+ EL+ ++R  S+++     DVKL
Sbjct: 62  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKL 103

>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 56  KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 112
           +   W++GRI+R ++ R++  +   +G FL+R S+S+P  F L++     +++F++L  +
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 113 SSGKFFLWV----VKFNSLNELVEYHR 135
             G+ F  +     KF+ L +LV++++
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89

>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 108

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 235 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 291
           +   W++GRI+R ++ R++  +   +G FL+R S+S+P  F L++     +++F++L  +
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 292 SSGKFFLWV----VKFNSLNELVEYHR 314
             G+ F  +     KF+ L +LV++++
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89

>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap Length = 64

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 9  FNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNY 52
          +  T EDEL+FR+ +++ +++ E  +  W++ EL+GKEG+ P N+
Sbjct: 15 YTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59

>pdb|1MIL|A Chain A, Transforming Protein Length = 104

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           +++   W++G+++R +AE LL  +  G FL+R S ++PG + L+   S   +H  +L D 
Sbjct: 3   QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHL-LLVDP 59
Query: 114 SGKFFLWVVKFNSLNELVEYH 134
            G       +F S++ L+ YH
Sbjct: 60  EGVVRTKDHRFESVSHLISYH 80

>pdb|1MIL|A Chain A, Transforming Protein Length = 104

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           +++   W++G+++R +AE LL  +  G FL+R S ++PG + L+   S   +H  +L D 
Sbjct: 3   QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHL-LLVDP 59
Query: 293 SGKFFLWVVKFNSLNELVEYH 313
            G       +F S++ L+ YH
Sbjct: 60  EGVVRTKDHRFESVSHLISYH 80

>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C Gamma-1 Length = 61

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNM 209
           V+AL+D+  Q   EL F +  +I   ++ D  WW G+ G +K L FP+ Y+  M
Sbjct: 6   VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 59

>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Length = 78

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G+ P  Y+
Sbjct: 17  VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 67

>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine- Containing Proline-Rich Peptides With The N-Terminal Sh3 Domain Of C-Crk Length = 57

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G+ P  Y+
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54

>pdb|2LMJ|A Chain A, Itk-Sh3 Length = 66

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYIL 207
           PEE +V ALYD+   +P EL  RR +   + D S+ HWW   +    +G  P++Y++
Sbjct: 6   PEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLV 62

>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor Length = 65

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G+ P  Y+
Sbjct: 6   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56

>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A Resolution Length = 69

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFPAT 204
           L +ALYD   + P EL FR+GD++TV ++  Q    WW   +  R+G+ P  
Sbjct: 5   LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGN 56

>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10 Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 56  KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 112
           +   W++GRI+R ++ R++  +   +G FL+R S+S+P  F L++     +++F++L  +
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 113 SSGKFFLWV----VKFNSLNELVEYHR 135
             G+ F  +     KF+ L +LV++++
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89

>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10 Length = 105

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 235 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-D 291
           +   W++GRI+R ++ R++  +   +G FL+R S+S+P  F L++     +++F++L  +
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62
Query: 292 SSGKFFLWV----VKFNSLNELVEYHR 314
             G+ F  +     KF+ L +LV++++
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQ 89

>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G+ P  Y+
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54

>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox Complexed With The C-Terminal Tail Region Of P47phox Length = 62

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+AL+ +   +P +LEF+ GD+I V  + ++ W  GE   + G+FP  ++
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALYD+T Q P EL+   GD++ V    +  WW  E   ++G  P +Y+
Sbjct: 12  RALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60

>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N- Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 57

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G+ P  Y+
Sbjct: 3   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 53

>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin Sh3 Length = 65

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--------HGEIGARKGLFPATYIL 207
           LV ALYD+  + P E+  ++GD++T+ + +++ WW        +G+   R+G  PA Y+ 
Sbjct: 3   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
Query: 208 NME 210
            ++
Sbjct: 63  KLD 65

>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif Length = 64

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNM 209
           V+AL+D+  Q   EL F +  +I   ++ D  WW G+ G +K L FP+ Y+  M
Sbjct: 9   VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 62

>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh Length = 70

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW--------HGEIGARKGLFPATYIL 207
           LV ALYD+  + P E+  ++GD++T+ + +++ WW        +G+   R+G  PA Y+ 
Sbjct: 8   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 67
Query: 208 NME 210
            ++
Sbjct: 68  KLD 70

>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene Protein C-Crk Length = 60

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G+ P  Y+
Sbjct: 6   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56

>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure Solution Of The Second Sh3 Domain From Ponsin Length = 67

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
          EAIAK +FN   + E+SFRK + + +L   D+ NWY   + G  ++G+ P  Y+++
Sbjct: 8  EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 62

>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure Solution Of The Second Sh3 Domain From Ponsin Length = 67

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           A ++F      E+ FR+G+ IT+  + D++W+ G I   +R+G+FP TY+
Sbjct: 11  AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + +V+A ++F      EL F +GDVI VT   +  WW G    R G FP+ Y+
Sbjct: 6   QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +ALY +  Q+  EL F   D+I +       WW G +  ++GLFP  Y+
Sbjct: 9   KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57

>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G+ P  Y+
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54

>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox Length = 79

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
           +AL+DFT     EL F+ GDVI +  R ++ W  G +    G+FP +++  ++D
Sbjct: 22  EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD 75

>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3 Domain-Containing Protein 1 Length = 70

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
          EAIAK +FN   + E+SFRK + + +L   D+ NWY   + G  ++G+ P  Y+++
Sbjct: 9  EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 63

>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3 Domain-Containing Protein 1 Length = 70

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           A ++F      E+ FR+G+ IT+  + D++W+ G I   +R+G+FP TY+
Sbjct: 12  AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61

>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine- Protein Kinase Txk Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 43  GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--- 98
           G  G   +    ++ ++WY+  ITR  AE LL  +  EGAF++R S    G +++SV   
Sbjct: 1   GSSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHL-GSYTISVFMG 59
Query: 99  ---KCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHR 135
                   ++H+++ ++ SG++++     F S+ EL+ YH+
Sbjct: 60  ARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQ 100

>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine- Protein Kinase Txk Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--- 277
           G  G   +    ++ ++WY+  ITR  AE LL  +  EGAF++R S    G +++SV   
Sbjct: 1   GSSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHL-GSYTISVFMG 59
Query: 278 ---KCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHR 314
                   ++H+++ ++ SG++++     F S+ EL+ YH+
Sbjct: 60  ARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQ 100

>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase Length = 60

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +AL+DFT     EL F+ GDVI +  R ++ W  G +    G+FP +++
Sbjct: 8   EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHWWHGEI-GARKGLFPATYI 206
           E  V+ALYD+  QE  EL F+ GD +T + D  +Q W  G +   + GL+PA Y+
Sbjct: 428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482

>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of Kiaa1010 Protein [homo Sapiens] Length = 79

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 5  AKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYI 53
          A + F A   +ELS   +Q LKIL  +D   +  W+ AE++GK+G +PSNYI
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69

>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A Phosphopeptidefrom The Gamma Chain Of The High Affinity Immunoglobin G Receptor, Nmr Length = 112

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 60  WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           W++G+I+R ++E+  L+ +K  G FLIR  +++ G ++L +     V H+++ +D +GK 
Sbjct: 15  WFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRIDKDKTGKL 73
Query: 118 FL-WVVKFNSLNELVEYH 134
            +    KF++L +LVE++
Sbjct: 74  SIPEGKKFDTLWQLVEHY 91

>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With A Phosphopeptidefrom The Gamma Chain Of The High Affinity Immunoglobin G Receptor, Nmr Length = 112

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 239 WYYGRITRADAER--LLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           W++G+I+R ++E+  L+ +K  G FLIR  +++ G ++L +     V H+++ +D +GK 
Sbjct: 15  WFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRIDKDKTGKL 73
Query: 297 FL-WVVKFNSLNELVEYH 313
            +    KF++L +LVE++
Sbjct: 74  SIPEGKKFDTLWQLVEHY 91

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + +V+A ++F      EL   +GD+I VT   +  WW G +  R G FP+ Y+
Sbjct: 10  QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 114

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 53  IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
           +E+ ++ W++G ++R  A +L+     +  G F+IR SE+ PG+  L+       +H ++
Sbjct: 6   LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL 65
Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMV 151
             +  G+  +  + F S+ +++ +  T  +      S D+ LR  V
Sbjct: 66  SLNGHGQCHVQHLWFQSVFDMLRHFHTHPIPLESGGSADITLRSYV 111

>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 114

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 232 IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
           +E+ ++ W++G ++R  A +L+     +  G F+IR SE+ PG+  L+       +H ++
Sbjct: 6   LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL 65
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMV 330
             +  G+  +  + F S+ +++ +  T  +      S D+ LR  V
Sbjct: 66  SLNGHGQCHVQHLWFQSVFDMLRHFHTHPIPLESGGSADITLRSYV 111

>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A Megakaryocyte-Associated Tyrosine Kinase (Matk) From Homo Sapiens At 1.50 A Resolution Length = 98

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G+I+  +A + L    +G FL+R S   PGD+ L V     V H++VL         
Sbjct: 7   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 66
Query: 120 WVVKFNSLNELVEYH 134
             V F +L + VE++
Sbjct: 67  EAVFFCNLXDXVEHY 81

>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A Megakaryocyte-Associated Tyrosine Kinase (Matk) From Homo Sapiens At 1.50 A Resolution Length = 98

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G+I+  +A + L    +G FL+R S   PGD+ L V     V H++VL         
Sbjct: 7   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 66
Query: 299 WVVKFNSLNELVEYH 313
             V F +L + VE++
Sbjct: 67  EAVFFCNLXDXVEHY 81

>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl Length = 65

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK--GLFPATYI 206
           QALY + PQ   ELE R GD++ V ++ D  W+ G     K  G FP  Y+
Sbjct: 10  QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 156 LVQAL--YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           +V+A+  +D+  Q   EL    G++IT   + D  WW G+I  R+GLFP  ++
Sbjct: 1   MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Length = 64

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK--GLFPATYI 206
           QALY + PQ   ELE R GD++ V ++ D  W+ G     K  G FP  Y+
Sbjct: 10  QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
           + ++ +  Q   EL  + GD++T+ ++   D  WW GE+  R+G+FP  ++
Sbjct: 11  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
            + ++ +  Q   EL  + GD++T+ ++   D  WW GE+  R+G+FP  ++
Sbjct: 12  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63

>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Intersectin 2 (Kiaa1256) Length = 74

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           E    QAL  +T ++   L F + D+ITV ++  ++WW GE+   +G FP +Y+
Sbjct: 9   ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYV 61

>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A Phosphopeptide From The Gp130 Receptor Length = 164

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           +++   +Y+  +T  +A  LLS +  G FLIR S      F+LSVK   G ++ ++ +  
Sbjct: 19  KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI-QCE 77
Query: 114 SGKFFLW--------VVKFNSLNELVEYHRTASVSRS---QDVKLRDMVPEECLVQALYD 162
            G F L         V +F+ + +LV ++     + S      +    VPE+   QAL  
Sbjct: 78  GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQPPAQALPG 137
Query: 163 FTPQ 166
            TP+
Sbjct: 138 STPK 141

>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A Phosphopeptide From The Gp130 Receptor Length = 164

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           +++   +Y+  +T  +A  LLS +  G FLIR S      F+LSVK   G ++ ++ +  
Sbjct: 19  KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRI-QCE 77
Query: 293 SGKFFLW--------VVKFNSLNELVEYHRTASVSRS---QDVKLRDMVPEECLVQALYD 341
            G F L         V +F+ + +LV ++     + S      +    VPE+   QAL  
Sbjct: 78  GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQPPAQALPG 137
Query: 342 FTPQ 345
            TP+
Sbjct: 138 STPK 141

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
           + ++ +  Q   EL  + GD++T+ ++   D  WW GE+  R+G+FP  ++
Sbjct: 6   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56

>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain Length = 64

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYIL 207
           PEE LV ALYD+   +P EL  R  +   + D S+ HWW   +    +G  P++Y++
Sbjct: 3   PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 59

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYI 206
           + ++ +  Q   EL  + GD++T+ ++   D  WW GE+  R+G+FP  ++
Sbjct: 7   KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 57

>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From Human Cdna Length = 71

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDR---SDQHWWHGEIGARKGLFPA 203
           L +ALYD  P    EL F RGD++T+ ++     + WW   +  R+GL PA
Sbjct: 9   LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPA 59

>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps Length = 114

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 53  IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 109
           +E+ ++ W++G ++R  A +L+     +  G F+IR SE+ PG+  L+       +H ++
Sbjct: 6   LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL 65
Query: 110 LRDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMV 151
             +  G+  +  + F S+ + + +  T  +      S D+ LR  V
Sbjct: 66  SLNGHGQCHVQHLWFQSVFDXLRHFHTHPIPLESGGSADITLRSYV 111

>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps Length = 114

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 232 IEMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
           +E+ ++ W++G ++R  A +L+     +  G F+IR SE+ PG+  L+       +H ++
Sbjct: 6   LELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRL 65
Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMV 330
             +  G+  +  + F S+ + + +  T  +      S D+ LR  V
Sbjct: 66  SLNGHGQCHVQHLWFQSVFDXLRHFHTHPIPLESGGSADITLRSYV 111

>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase Length = 63

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYIL 207
           PEE LV ALYD+   +P EL  R  +   + D S+ HWW   +    +G  P++Y++
Sbjct: 3   PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 59

>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42 Structures Length = 67

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYILNMED 211
           V ALYD+ P    +L+ R+GD   + + S+  WW   +   ++G  P+ Y+   ED
Sbjct: 11  VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED 66

>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States By Relaxation Dispersion Nmr Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAEL--DGKEGLIPSNYIEMKN 57
          A A++D++A  ++EL+F ++   KI+N+E  D +W+  EL  DG +GL PSNY+ + N
Sbjct: 7  ATAEYDYDAAEDNELTFVEND--KIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 62

>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average Structure Length = 77

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYIL 207
           PEE LV ALYD+   +P EL  R  +   + D S+ HWW   +    +G  P++Y++
Sbjct: 18  PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74

>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo Sapiens] Length = 72

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ALY F   EP EL+F  GD I +    +  W  G +  R G+FP  ++
Sbjct: 18  ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFV 65

>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant Length = 73

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 19 VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69

>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 90

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYILNME 210
           E+ +V ALYD+    P +L F++GD + V + S + W    +  RK G  P+ Y+  ++
Sbjct: 2   EDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60

>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Length = 73

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 19 VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69

>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3 Domain Length = 59

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 4  VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant, Cut At S19-P20 Length = 63

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 168 PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++
Sbjct: 3   PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 45

>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures Length = 69

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 9  VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|1FYN|A Chain A, Phosphotransferase Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 8  VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58

>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant Length = 58

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 5  VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain Length = 64

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 9  VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3-Kinase, Minimized Average (Probmap) Structure Length = 67

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 7  VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57

>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The Function Of Yeast Sh3 Domains Length = 59

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAEL--DGKEGLIPSNYIEMKN 57
          A A++D++A  ++EL+F ++   KI+N+E  D +W+  EL  DG +GL PSNY+ + N
Sbjct: 4  ATAEYDYDAAEDNELTFVEND--KIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 59

>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain Length = 57

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 4  VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin Length = 59

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 5  VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 61

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYILNME 210
           E+ +V ALYD+    P +L F++GD + V + S + W    +  RK G  P+ Y+  ++
Sbjct: 2   EDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60

>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX Length = 61

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNW-YRAELDGKEGLIPSNYI 53
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+
Sbjct: 5  VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55

>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein Abp1 Sh3 Domain Length = 58

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAEL--DGKEGLIPSNYIEMKN 57
          A A++D++A  ++EL+F ++   KI+N+E  D +W+  EL  DG +GL PSNY+ + N
Sbjct: 3  ATAEYDYDAAEDNELTFVEND--KIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58

>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41 Length = 77

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 168 PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++
Sbjct: 5   PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 47

>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The Adapter Protein Sh2-B Length = 111

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 55  MKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
           +  + W++G ++R  A +L+        G FL+R SE+  G+  L+       +H ++  
Sbjct: 6   LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSL 65
Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMVP 152
           +++G+  +  + F S+ +++E+ R   +      S DV L   VP
Sbjct: 66  NAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110

>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The Adapter Protein Sh2-B Length = 111

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 234 MKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
           +  + W++G ++R  A +L+        G FL+R SE+  G+  L+       +H ++  
Sbjct: 6   LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSL 65
Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMVP 331
           +++G+  +  + F S+ +++E+ R   +      S DV L   VP
Sbjct: 66  NAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110

>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex With A Peptide Of Xirp2 Length = 64

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           +A+YD++ Q+  E+ FR GD I      D  W +G +    R G+ PA YI
Sbjct: 10  RAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	7e-73
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	7e-51
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	2e-64
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	2e-27
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	2e-61
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	3e-26
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	2e-50
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-30
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-15
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	8e-50
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	3e-34
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-25
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	4e-08
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-47
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-45
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	6e-47
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-19
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	1e-46
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	1e-46
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	4e-46
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	4e-46
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	1e-45
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	1e-45
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	8e-43
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-42
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	1e-41
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	1e-41
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	6e-41
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	6e-41
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	7e-41
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	3e-27
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	3e-23
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	2e-10
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	5e-40
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	5e-40
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	9e-38
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	9e-38
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	2e-37
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	2e-37
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	3e-37
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-24
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	9e-24
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-10
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	3e-37
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	3e-37
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	8e-37
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-21
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-13
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	8e-37
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-36
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	8e-37
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	8e-37
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-36
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-36
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-36
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-36
2dly_A	121	FYN-related kinase; BRK family kinase, structural	2e-36
2dly_A	121	FYN-related kinase; BRK family kinase, structural	2e-36
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-36
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-36
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	1e-35
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	1e-35
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	1e-35
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	1e-35
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	6e-35
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	7e-35
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	1e-34
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	1e-34
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	1e-34
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	1e-34
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	2e-34
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	2e-34
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	3e-34
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	3e-34
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	3e-34
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	3e-34
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	8e-34
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	8e-34
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	9e-34
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	9e-34
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	2e-33
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	2e-33
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	2e-33
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	2e-33
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	2e-33
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	2e-33
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	2e-33
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	4e-32
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	1e-32
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	1e-32
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	3e-32
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	3e-32
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	4e-32
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	4e-32
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	5e-32
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	5e-32
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	6e-32
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	6e-32
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	3e-31
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	3e-31
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	1e-30
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	1e-30
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	2e-30
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	2e-30
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	2e-30
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	2e-30
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	3e-30
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	3e-30
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	3e-30
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	3e-30
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	5e-30
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	5e-30
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	7e-30
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	7e-30
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	1e-29
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	1e-29
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	4e-29
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	3e-26
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	5e-05
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-29
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-29
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	1e-28
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	1e-28
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	2e-28
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	2e-28
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	2e-28
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	2e-28
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	6e-28
3gqi_B	226	Phospholipase C-gamma-1; phosphorylated kinase, PY	4e-27
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	1e-27
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	1e-27
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	3e-27
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	3e-27
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	8e-27
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	1e-26
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	8e-21
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	1e-20
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	4e-26
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	1e-22
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	1e-24
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	1e-24
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	1e-23
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	7e-15
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	2e-04
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-23
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	6e-15
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	5e-05
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	3e-23
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-14
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	4e-05
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	3e-23
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-15
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-04
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	3e-23
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	3e-23
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	4e-23
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-18
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-04
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	5e-23
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-14
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	5e-05
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	5e-23
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	9e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	6e-05
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	9e-23
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	1e-19
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	7e-04
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	1e-22
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	1e-22
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-22
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	4e-15
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	4e-04
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-22
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	5e-16
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	6e-04
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	1e-22
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	8e-15
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	2e-04
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	1e-22
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	3e-18
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	5e-04
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	2e-22
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	3e-19
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	5e-04
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	2e-22
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	8e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-04
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	3e-22
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	4e-15
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	2e-04
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	3e-22
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	3e-15
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	7e-04
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	3e-22
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	9e-16
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	7e-04
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	3e-22
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	5e-15
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	7e-04
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	3e-22
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-15
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-04
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	4e-22
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-15
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	6e-04
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	6e-22
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	8e-16
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	5e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-22
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-22
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	6e-22
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	5e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	2e-04
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	7e-22
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	6e-09
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	7e-22
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	4e-17
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	7e-22
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	4e-15
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	9e-04
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	8e-22
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	1e-16
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	7e-04
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	8e-22
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	2e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	5e-04
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	9e-22
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	2e-14
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	1e-04
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	1e-21
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	2e-14
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	6e-04
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	1e-21
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	9e-18
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-04
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	1e-21
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-15
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	1e-21
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	1e-14
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	4e-05
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	1e-21
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	4e-15
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	2e-04
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-21
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	5e-15
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	3e-04
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	2e-21
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	9e-15
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	3e-21
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	2e-15
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	5e-04
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	3e-21
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	4e-15
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	6e-04
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	4e-21
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	8e-18
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	6e-21
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	3e-15
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	4e-04
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	6e-21
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	7e-14
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	6e-04
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	8e-21
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	7e-15
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	1e-20
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	9e-15
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	9e-04
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	1e-20
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	2e-14
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-20
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	6e-15
3u23_A	65	CD2-associated protein; structural genomics, struc	2e-20
3u23_A	65	CD2-associated protein; structural genomics, struc	1e-13
3u23_A	65	CD2-associated protein; structural genomics, struc	4e-04
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	2e-20
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	2e-15
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	2e-20
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-16
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	5e-04
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-20
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	1e-14
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	3e-20
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	1e-12
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-20
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	9e-14
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	5e-04
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	3e-20
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	8e-16
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	4e-20
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	1e-13
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	5e-20
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	2e-14
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	2e-05
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	5e-20
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	6e-14
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	6e-20
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	4e-15
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	5e-05
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	6e-20
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	7e-16
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	5e-12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	8e-11
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	7e-20
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-15
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-04
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	8e-20
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-16
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	9e-20
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-15
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	6e-04
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-19
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	7e-15
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	1e-19
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	4e-17
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-19
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	3e-13
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-19
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	5e-15
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	2e-19
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	1e-13
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-19
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	1e-14
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	3e-04
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-19
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	4e-14
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	7e-04
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-19
1awj_A	77	ITK; transferase, regulatory intramolecular comple	6e-15
1awj_A	77	ITK; transferase, regulatory intramolecular comple	9e-05
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-19
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	3e-13
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	2e-19
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-14
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	6e-04
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	4e-19
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	3e-15
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	4e-19
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	8e-15
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	5e-19
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	2e-14
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-04
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	5e-19
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	3e-14
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-04
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	5e-19
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	5e-13
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	7e-04
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	6e-19
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	2e-15
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	6e-19
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	4e-13
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	9e-19
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	8e-13
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	1e-18
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-13
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-18
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-13
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-04
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	1e-18
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	5e-14
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	1e-18
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-14
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-18
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	4e-13
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-18
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-14
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-18
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	4e-14
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	2e-18
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	2e-14
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	2e-18
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	5e-14
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	3e-18
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	1e-17
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	3e-18
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	5e-14
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	2e-05
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	4e-18
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	9e-14
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	4e-18
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	2e-12
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	5e-18
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	1e-12
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	5e-18
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	3e-12
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	5e-18
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	1e-14
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	6e-18
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	6e-13
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	6e-18
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	1e-17
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	6e-18
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-15
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	7e-18
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	2e-15
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	7e-18
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-16
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	9e-18
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	3e-16
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	1e-17
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	1e-15
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	4e-04
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-17
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-12
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	1e-17
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	5e-12
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	1e-04
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-17
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-11
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-17
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-11
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	2e-17
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	5e-12
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	3e-17
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	4e-16
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	3e-17
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	3e-16
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	3e-17
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	1e-12
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	4e-17
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	7e-13
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	4e-17
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	7e-11
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	5e-17
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	3e-13
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	5e-17
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	1e-13
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	5e-17
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	4e-15
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	5e-17
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	9e-14
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	6e-17
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	1e-11
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	9e-17
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	5e-14
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-16
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-13
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-16
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	5e-08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	7e-05
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	3e-16
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	3e-14
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	3e-16
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	9e-12
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	5e-16
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	2e-10
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	5e-16
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	3e-12
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	6e-16
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-15
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	7e-16
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	3e-14
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	7e-16
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	3e-13
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	9e-16
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	5e-08
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-15
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	2e-14
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-15
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	3e-11
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	1e-15
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	2e-13
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	3e-04
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	1e-15
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	7e-14
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	3e-04
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	1e-15
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	2e-14
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	2e-15
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	2e-15
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	2e-15
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	2e-12
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	2e-15
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	2e-15
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	2e-15
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	4e-13
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	4e-04
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	2e-15
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	1e-13
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	5e-04
1wxb_A	68	Epidermal growth factor receptor pathway substrate	3e-15
1wxb_A	68	Epidermal growth factor receptor pathway substrate	7e-14
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	3e-15
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-11
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	3e-15
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	3e-10
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	4e-15
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	9e-14
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	5e-04
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	5e-15
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	5e-14
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	9e-15
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	3e-08
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	9e-15
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	7e-12
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	9e-15
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	2e-13
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	4e-04
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	1e-14
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	1e-11
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	2e-14
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	8e-12
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-14
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	4e-14
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	2e-14
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	6e-11
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-14
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	4e-14
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	2e-14
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	6e-14
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	4e-14
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	2e-09
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	7e-14
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-08
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	8e-14
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	5e-10
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	1e-13
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	2e-09
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	1e-13
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	2e-11
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-13
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	1e-12
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	2e-13
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	1e-07
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	2e-13
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	3e-09
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-13
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	6e-09
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	2e-13
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	2e-12
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	2e-13
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	1e-08
1i07_A	60	Epidermal growth factor receptor kinase substrate	4e-13
1i07_A	60	Epidermal growth factor receptor kinase substrate	1e-12
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	6e-13
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	7e-13
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	7e-13
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	4e-05
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	7e-13
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	7e-08
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	1e-12
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	3e-06
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	1e-12
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	3e-09
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	3e-12
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	3e-12
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	8e-12
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	8e-12
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-11
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	8e-06
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	4e-11
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	1e-07
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	5e-11
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	1e-05
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	1e-10
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	1e-07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-10
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	5e-07
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	4e-10
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	4e-10
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	8e-10
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	1e-09
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	2e-08
1u3o_A	82	Huntingtin-associated protein-interacting protein;	2e-08
1u3o_A	82	Huntingtin-associated protein-interacting protein;	7e-05
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	5e-08
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	1e-07
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	1e-07
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	3e-07
1uur_A	473	Stata protein, STAT protein; transcription activat	4e-07
1uur_A	473	Stata protein, STAT protein; transcription activat	4e-07
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	8e-07
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	7e-04
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	3e-06
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	3e-06
1y1u_A	585	Signal transducer and activator of transcription;	2e-05
1y1u_A	585	Signal transducer and activator of transcription;	2e-05
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1bf5_A	575	Signal transducer and activator of transcription 1	2e-04
1bf5_A	575	Signal transducer and activator of transcription 1	2e-04
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	2e-04
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	4e-04
1bg1_A	596	Protein (transcription factor STAT3B); protein-DNA	4e-04
1yvl_A	683	Signal transducer and activator of transcription 1	8e-04
1yvl_A	683	Signal transducer and activator of transcription 1	9e-04
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	8e-04

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score =  225 bits (574), Expect = 7e-73
 Identities = 130/217 (59%), Positives = 164/217 (75%), Gaps = 4/217 (1%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
           MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H W
Sbjct: 1   MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW 60

Query: 61  YYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK+FL
Sbjct: 61  FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL 120

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVK---LRDMVPEECLVQALYDFTPQEPGELEFRRG 176
           WVVKFNSLNELV+YHR+ SVSR+Q +    +  +  +   VQAL+DF PQE GEL FRRG
Sbjct: 121 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG 180

Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM 213
           D I V D SD +WW G    + G+FP  Y+  +  ++
Sbjct: 181 DFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV 217

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score =  168 bits (427), Expect = 7e-51
 Identities = 105/207 (50%), Positives = 130/207 (62%), Gaps = 29/207 (14%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
             A YDF      EL F+RGD++ V +      W                         Y
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNW-------------------------Y 37

Query: 217 RAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSL 275
           +AEL+GK+G IP NYIEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSL
Sbjct: 38  KAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSL 97

Query: 276 SVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVK---LRDMVPE 332
           SVK  + VQHFKVLRD +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q +    +  +  +
Sbjct: 98  SVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 157

Query: 333 ECLVQALYDFTPQEPGELEFRRDLKIK 359
              VQAL+DF PQE GEL FRR   I 
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIH 184

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score =  205 bits (522), Expect = 2e-64
 Identities = 57/281 (20%), Positives = 104/281 (37%), Gaps = 38/281 (13%)

Query: 57  NHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           +  ++YG I+RA+AE  L  +   +G FL+R    S G + LS+       HF + R  +
Sbjct: 5   HLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLN 64

Query: 115 GKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEF 173
           G + +          EL E++                   + L   L     +  G    
Sbjct: 65  GTYAIAGGKAHCGPAELCEFYSRDP---------------DGLPCNLRKPCNRPSGLEPQ 109

Query: 174 RRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
                         +         + L  A      + +                     
Sbjct: 110 PGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIA--------------TTA 155

Query: 234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
            +   WY+  +TR +AER L +  + +G FL+R  +   G ++LS+     V H+ + +D
Sbjct: 156 HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYHYLISQD 214

Query: 292 SSGKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 331
            +GK+ +    KF++L +LVEY +  +        L++  P
Sbjct: 215 KAGKYCIPEGTKFDTLWQLVEYLKLKADGLI--YCLKEACP 253

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A Length = 254

 Score =  108 bits (270), Expect = 2e-27
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
                  +   WY+  +TR +AER L +  + +G FL+R  +   G ++LS+     V H
Sbjct: 150 LIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYH 208

Query: 107 FKVLRDSSGKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
           + + +D +GK+ +    KF++L +LVEY +  +        L++  P
Sbjct: 209 YLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGLI--YCLKEACP 253

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score =  197 bits (502), Expect = 2e-61
 Identities = 57/267 (21%), Positives = 112/267 (41%), Gaps = 36/267 (13%)

Query: 57  NHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           +  +++G ITR +AE  L      +G +L+R S +  G F+LSV       H+ + R+ +
Sbjct: 4   HLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELN 63

Query: 115 GKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEF 173
           G + +       S  +L  YH   S               + LV  L     +  G    
Sbjct: 64  GTYAIAGGRTHASPADLCHYHSQES---------------DGLVCLLKKPFNRPQGV--- 105

Query: 174 RRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
                          +   +    +     T+ L  +       ++    E LI +    
Sbjct: 106 ---------QPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLIATTA-- 154

Query: 234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
            +   W++G+I+R ++E+++   +K  G FLIR  + + G ++L +     V H+++ +D
Sbjct: 155 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARD-NNGSYALCLLHEGKVLHYRIDKD 213

Query: 292 SSGKFFL-WVVKFNSLNELVEYHRTAS 317
            +GK  +    KF++L +LVE++   +
Sbjct: 214 KTGKLSIPEGKKFDTLWQLVEHYSYKA 240

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A* Length = 254

 Score =  104 bits (261), Expect = 3e-26
 Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 4/93 (4%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
                  +   W++G+I+R ++E+++   +K  G FLIR  + + G ++L +     V H
Sbjct: 149 LIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARD-NNGSYALCLLHEGKVLH 207

Query: 107 FKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
           +++ +D +GK  +    KF++L +LVE++   +
Sbjct: 208 YRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKA 240

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score =  168 bits (425), Expect = 2e-50
 Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 59/256 (23%)

Query: 46  GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 105
           G +  N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V 
Sbjct: 1   GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60

Query: 106 HFKVLRD-----------------SSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR 148
           H+ +                    S  +  +   +F+SL  L+E+++   +  +  ++  
Sbjct: 61  HYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPV 120

Query: 149 ----------DMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK 198
                         E   V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E     
Sbjct: 121 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS--- 177

Query: 199 GLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE 258
                                 +GK G+IP  Y+E         R   A    L+    E
Sbjct: 178 ----------------------EGKRGMIPVPYVEK-------YRPASASVSALIGGNQE 208

Query: 259 GAFLIRVSESSPGDFS 274
           G+    +    PG ++
Sbjct: 209 GSHPQPLGGPEPGPYA 224

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score =  116 bits (290), Expect = 1e-30
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 27/157 (17%)

Query: 225 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQ 284
           G +  N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V 
Sbjct: 1   GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVS 60

Query: 285 HFKVLRD-----------------SSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR 327
           H+ +                    S  +  +   +F+SL  L+E+++   +  +  ++  
Sbjct: 61  HYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPV 120

Query: 328 ----------DMVPEECLVQALYDFTPQEPGELEFRR 354
                         E   V+AL+DF   +  +L F++
Sbjct: 121 SRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 157

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 73.4 bits (179), Expect = 3e-15
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHD 59
               A  DFN   E++L F+K  +L+I +  ++  W+ AE  +GK G+IP  Y+E     
Sbjct: 137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEGKRGMIPVPYVEK---- 191

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFS 95
               R   A    L+    EG+    +    PG ++
Sbjct: 192 ---YRPASASVSALIGGNQEGSHPQPLGGPEPGPYA 224

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score =  168 bits (427), Expect = 8e-50
 Identities = 45/263 (17%), Positives = 96/263 (36%), Gaps = 18/263 (6%)

Query: 35  NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPG 92
             + A + G + +  + +   +   +Y+  ++R +A +LL       G FL+R S S PG
Sbjct: 18  GSHMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPG 76

Query: 93  DFSLSVKCSD---GVQHFKVLRDSS-------GKFFLWVVKFNSLNELVEYHRTASVSRS 142
           ++SL+V+ +D    V H+ + R              +    F  +  L+ + +   ++ +
Sbjct: 77  EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEA 136

Query: 143 QDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKGLF 201
             +      P   +V   + FT +   +L F +G+ + +  +++Q WW         GL 
Sbjct: 137 S-LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLV 195

Query: 202 PATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAF 261
           PA Y+   +  M ++                      +     +  + E       +   
Sbjct: 196 PANYV---QIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKV 252

Query: 262 LIRVSESSPGDFSLSVKCSDGVQ 284
                 ++     L VK    V 
Sbjct: 253 TFDRVPNAYDPTQLRVKKGQTVL 275

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score =  127 bits (320), Expect = 3e-34
 Identities = 30/158 (18%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 214 NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPG 271
             + A + G + +  + +   +   +Y+  ++R +A +LL       G FL+R S S PG
Sbjct: 18  GSHMASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPG 76

Query: 272 DFSLSVKCSD---GVQHFKVLRDSS-------GKFFLWVVKFNSLNELVEYHRTASVSRS 321
           ++SL+V+ +D    V H+ + R              +    F  +  L+ + +   ++ +
Sbjct: 77  EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEA 136

Query: 322 QDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
             +      P   +V   + FT +   +L F +  +++
Sbjct: 137 S-LLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLE 173

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score =  102 bits (255), Expect = 5e-25
 Identities = 31/207 (14%), Positives = 75/207 (36%), Gaps = 54/207 (26%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHD 59
              +    F    E +L F + + L+IL+ + + +W+ A    G  GL+P+NY+++   +
Sbjct: 148 EVVVGTFKFTGERETDLPFEQGERLEILS-KTNQDWWEARNALGTTGLVPANYVQI-QME 205

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           ++  R ++  ++  + +   G                                       
Sbjct: 206 FHNDRTSKGASQSSIGSSGGG--------------------------------------- 226

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVI 179
                           +++ + S +++L+  +P +  V         +P +L  ++G  +
Sbjct: 227 ------------AERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTV 274

Query: 180 TVTDRSDQHWWHGEIGARKGLFPATYI 206
            VT +     +  E+  + G  P TY+
Sbjct: 275 LVTQKMSNGMYKAELDGQIGSVPHTYL 301

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 2   EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
           +       NA    +L  +K Q + +     +   Y+AELDG+ G +P  Y+  
Sbjct: 251 KVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSN-GMYKAELDGQIGSVPHTYLRF 303

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score =  166 bits (421), Expect = 6e-47
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE----MKNHD 59
           +A +DF A+ ++ LS  K + L++L    +  W  A+    +G +PSNYI     ++ H 
Sbjct: 47  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHS 106

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S GK ++
Sbjct: 107 WYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYV 166

Query: 120 W-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDV 178
               +FN+L ELV +H T     +  +      P     +           + E  R D+
Sbjct: 167 SSESRFNTLAELVHHHST----VADGLITTLHYPAPKRNKPTIYGVSPNYDKWEMERTDI 222

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score =  162 bits (411), Expect = 1e-45
 Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 35/216 (16%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
            +  L  ALYDF       L   +G+ + V   +    W                     
Sbjct: 41  NDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEW--------------------- 79

Query: 212 DMNWYRAELDGKEGLIPSNYIE----MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSE 267
                 A+    +G +PSNYI     ++ H WY+G ++R  AE LLS+   G+FL+R SE
Sbjct: 80  ----CEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESE 135

Query: 268 SSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKL 326
           SSPG  S+S++    V H+++   S GK ++    +FN+L ELV +H T     +  +  
Sbjct: 136 SSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHST----VADGLIT 191

Query: 327 RDMVPEECLVQALYDFTPQEPGELEF-RRDLKIKRR 361
               P     +           + E  R D+ +K +
Sbjct: 192 TLHYPAPKRNKPTIYGVSPNYDKWEMERTDITMKHK 227

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score =  167 bits (425), Expect = 6e-47
 Identities = 61/295 (20%), Positives = 104/295 (35%), Gaps = 38/295 (12%)

Query: 60  WYYGRITRADAERLLSNK--HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           ++YG I+RA+AE  L      +G FL+R    S G + LS+       HF + R  +G +
Sbjct: 10  FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 69

Query: 118 FLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRG 176
            +          EL E++                   + L   L     +  G       
Sbjct: 70  AIAGGKAHCGPAELCEFYSRDP---------------DGLPCNLRKPCNRPSGLEPQP-- 112

Query: 177 DVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 236
                               R+        L         + E               + 
Sbjct: 113 -----GVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEK-------LIATTAHER 160

Query: 237 HDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
             WY+  +TR +AER L +  + +G FL+R  +   G ++LS+     V H+ + +D +G
Sbjct: 161 MPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAG 219

Query: 295 KFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPG 348
           K+ +    KF++L +LVEY +    +      L++  P      A     P  P 
Sbjct: 220 KYCIPEGTKFDTLWQLVEYLKL--KADGLIYCLKEACPNSSASNASGAAAPTLPA 272

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 88.8 bits (220), Expect = 2e-19
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
                  +   WY+  +TR +AER L +  + +G FL+R  +   G ++LS+     V H
Sbjct: 152 LIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYH 210

Query: 107 FKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTP 165
           + + +D +GK+ +    KF++L +LVEY +    +      L++  P      A     P
Sbjct: 211 YLISQDKAGKYCIPEGTKFDTLWQLVEYLKL--KADGLIYCLKEACPNSSASNASGAAAP 268

Query: 166 QEPG 169
             P 
Sbjct: 269 TLPA 272

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  153 bits (390), Expect = 1e-46
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 43  GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 102
           G  G   S  I+   + W+ G + R   + LL +   G +LIR   +    F++S+K +D
Sbjct: 1   GSSGSSGSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFND 60

Query: 103 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 148
            V+H KV+   +        KF+SL ELVEY++  S+  S       L+
Sbjct: 61  EVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLK 109

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  153 bits (390), Expect = 1e-46
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 281
           G  G   S  I+   + W+ G + R   + LL +   G +LIR   +    F++S+K +D
Sbjct: 1   GSSGSSGSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFND 60

Query: 282 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 327
            V+H KV+   +        KF+SL ELVEY++  S+  S       L+
Sbjct: 61  EVKHIKVVEKDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLK 109

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score =  152 bits (386), Expect = 4e-46
 Identities = 26/101 (25%), Positives = 51/101 (50%)

Query: 43  GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 102
           G  G+  + +       WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  + 
Sbjct: 4   GSSGMSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENS 63

Query: 103 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 143
            V H+ +    + +F +   +F+ L  L+E+++   +  + 
Sbjct: 64  RVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTT 104

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score =  152 bits (386), Expect = 4e-46
 Identities = 26/101 (25%), Positives = 51/101 (50%)

Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 281
           G  G+  + +       WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  + 
Sbjct: 4   GSSGMSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENS 63

Query: 282 GVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 322
            V H+ +    + +F +   +F+ L  L+E+++   +  + 
Sbjct: 64  RVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTT 104

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score =  151 bits (383), Expect = 1e-45
 Identities = 51/99 (51%), Positives = 74/99 (74%)

Query: 51  NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
           ++I+++  +W++  ++R  AE LL  K  G F+IR S+SSPGDFS+SV+  D VQHFKV+
Sbjct: 2   SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 61

Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 149
           RD+ G +FLW  KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 62  RDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 100

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A* Length = 100

 Score =  151 bits (383), Expect = 1e-45
 Identities = 51/99 (51%), Positives = 74/99 (74%)

Query: 230 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
           ++I+++  +W++  ++R  AE LL  K  G F+IR S+SSPGDFS+SV+  D VQHFKV+
Sbjct: 2   SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVM 61

Query: 290 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 328
           RD+ G +FLW  KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 62  RDTKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 100

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score =  154 bits (390), Expect = 8e-43
 Identities = 56/146 (38%), Positives = 88/146 (60%), Gaps = 11/146 (7%)

Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE-------- 54
           IAK++F+ TAE +L F K  VL I+ +  D NWY+A+   G+EG+IP+NY++        
Sbjct: 15  IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAG 74

Query: 55  --MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
             +    W++G+ITR  AERLL     G FL+R S + PGD++L V C   V+H++++  
Sbjct: 75  TKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYH 134

Query: 113 SSGKFFLWVVKFNSLNELVEYHRTAS 138
           +S       V F +L +LVE++ T +
Sbjct: 135 ASKLSIDEEVYFENLMQLVEHYTTDA 160

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score =  152 bits (385), Expect = 4e-42
 Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 38/225 (16%)

Query: 147 LRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           ++   P      A Y+F      +L F +GDV+T+   +    W                
Sbjct: 4   IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNW---------------- 47

Query: 207 LNMEDDMNWYRAELDGKEGLIPSNYIE----------MKNHDWYYGRITRADAERLLSNK 256
                   +      G+EG+IP+NY++          +    W++G+ITR  AERLL   
Sbjct: 48  --------YKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQAERLLYPP 99

Query: 257 HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTA 316
             G FL+R S + PGD++L V C   V+H++++  +S       V F +L +LVE++ T 
Sbjct: 100 ETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQLVEHYTT- 158

Query: 317 SVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKRR 361
             +     +L      E  V A  +F       L   ++LK+ + 
Sbjct: 159 -DADGLCTRLIKPKVMEGTVAAQDEFYRSGW-ALN-MKELKLLQT 200

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score =  140 bits (356), Expect = 1e-41
 Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 1/95 (1%)

Query: 57  NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
           +  W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +G
Sbjct: 2   SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 61

Query: 116 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           K+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 62  KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A* Length = 96

 Score =  140 bits (356), Expect = 1e-41
 Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 1/95 (1%)

Query: 236 NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
           +  W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +G
Sbjct: 2   SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAG 61

Query: 295 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           K+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 62  KYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score =  139 bits (352), Expect = 6e-41
 Identities = 74/140 (52%), Positives = 90/140 (64%), Gaps = 26/140 (18%)

Query: 53  IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 1   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60

Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGEL 171
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+              PQ+P   
Sbjct: 61  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQV-----------PQQP--- 106

Query: 172 EFRRGDVITVTDRSDQHWWH 191
                           H  H
Sbjct: 107 -----------TYVQAHHHH 115

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ... Length = 117

 Score =  139 bits (352), Expect = 6e-41
 Identities = 69/102 (67%), Positives = 84/102 (82%), Gaps = 1/102 (0%)

Query: 232 IEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 290
           IEMK H W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLR
Sbjct: 1   IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR 60

Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPE 332
           D +GK+FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+   
Sbjct: 61  DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQV 102

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score =  145 bits (365), Expect = 7e-41
 Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 42/212 (19%)

Query: 47  LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
           +  + +       WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  +  V H
Sbjct: 1   MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSH 60

Query: 107 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL---------- 156
           + +    + +F +   +F+ L  L+E+++   +  +  ++     P   +          
Sbjct: 61  YIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPT 120

Query: 157 -------VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
                  V+ LYDF   +  +L F++G+++ + ++ ++ WW                   
Sbjct: 121 AEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNK-------------- 166

Query: 210 EDDMNWYRAELDGKEGLIPSNYIEMKNHDWYY 241
                      DG+ G+IP  Y+E       +
Sbjct: 167 -----------DGRVGMIPVPYVEKLVRSSPH 187

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score =  108 bits (270), Expect = 3e-27
 Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 17/151 (11%)

Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
           +  + +       WY G ++R +A+  L  +  G FL+R S + PGD+ LSV  +  V H
Sbjct: 1   MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSH 60

Query: 286 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECL---------- 335
           + +    + +F +   +F+ L  L+E+++   +  +  ++     P   +          
Sbjct: 61  YIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPT 120

Query: 336 -------VQALYDFTPQEPGELEFRRDLKIK 359
                  V+ LYDF   +  +L F++   + 
Sbjct: 121 AEDNLEYVRTLYDFPGNDAEDLPFKKGEILV 151

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 97.8 bits (242), Expect = 3e-23
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 40/207 (19%)

Query: 6   KHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRI 65
            +DF     ++L F+K ++L I+   ++  W     DG+ G+IP  Y+E       +G+ 
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKH 190

Query: 66  TRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFN 125
              ++        E A      +++    ++S      +      ++             
Sbjct: 191 GNRNSNS--YGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNG------------ 236

Query: 126 SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRS 185
                                     P              +   L    GD++ VT  +
Sbjct: 237 --------------------------PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMN 270

Query: 186 DQHWWHGEIGARKGLFPATYILNMEDD 212
               W GE+  RKGLFP T++   +  
Sbjct: 271 INGQWEGEVNGRKGLFPFTHVKIFDPQ 297

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
           AI K    A  +  L+     ++K+  M  +   +  E++G++GL P  ++++
Sbjct: 242 AIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGEVNGRKGLFPFTHVKI 293

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  137 bits (346), Expect = 5e-40
 Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 45  EGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 104
               P N +E   H WY+G ++R+ AE LLS+   G+FL+R SESSPG  S+S++    V
Sbjct: 5   SSGTPVNSLEK--HSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRV 62

Query: 105 QHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
            H+++   + GK ++    +F++L ELV +H T +
Sbjct: 63  YHYRINTTADGKVYVTAESRFSTLAELVHHHSTVA 97

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  137 bits (346), Expect = 5e-40
 Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 224 EGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 283
               P N +E   H WY+G ++R+ AE LLS+   G+FL+R SESSPG  S+S++    V
Sbjct: 5   SSGTPVNSLEK--HSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRV 62

Query: 284 QHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
            H+++   + GK ++    +F++L ELV +H T +
Sbjct: 63  YHYRINTTADGKVYVTAESRFSTLAELVHHHSTVA 97

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score =  131 bits (331), Expect = 9e-38
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 38  RAELDGKEGLIPSNY-IEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDF 94
                   GL+P    +  ++  W++ +I+R +A+RL+  +   +G FL+R S+S+P  F
Sbjct: 5   HHHHHHSSGLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTF 64

Query: 95  SLSVKCSDGVQHFKVLRDSSGKFFLWV-----VKFNSLNELVEYHRTAS 138
            LS+     ++HF+++                 +F  L +LVE+++   
Sbjct: 65  VLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNK 113

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens} Length = 126

 Score =  131 bits (331), Expect = 9e-38
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 217 RAELDGKEGLIPSNY-IEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDF 273
                   GL+P    +  ++  W++ +I+R +A+RL+  +   +G FL+R S+S+P  F
Sbjct: 5   HHHHHHSSGLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTF 64

Query: 274 SLSVKCSDGVQHFKVLRDSSGKFFLWV-----VKFNSLNELVEYHRTAS 317
            LS+     ++HF+++                 +F  L +LVE+++   
Sbjct: 65  VLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNK 113

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  130 bits (328), Expect = 2e-37
 Identities = 25/101 (24%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 55  MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
            +   W++G+I++ +A  LL +     +FL+R S+++PGD+SL  + ++ +Q FK+    
Sbjct: 13  HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP 72

Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
           + +F +    +NS+ ++++++R   +       L++ VP +
Sbjct: 73  NNQFMMGGRYYNSIGDIIDHYRKEQIVEG--YYLKEPVPMQ 111

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score =  130 bits (328), Expect = 2e-37
 Identities = 25/101 (24%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 234 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
            +   W++G+I++ +A  LL +     +FL+R S+++PGD+SL  + ++ +Q FK+    
Sbjct: 13  HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTP 72

Query: 293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
           + +F +    +NS+ ++++++R   +       L++ VP +
Sbjct: 73  NNQFMMGGRYYNSIGDIIDHYRKEQIVEG--YYLKEPVPMQ 111

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score =  135 bits (341), Expect = 3e-37
 Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 28/266 (10%)

Query: 48  IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           +  N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60

Query: 108 KVLRD-----------------SSGKFFLWVVKFNSLNELVEYHRTASVSR--------- 141
            +                    S  +  +   +F+SL  L+E+++   +           
Sbjct: 61  IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120

Query: 142 -SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKG 199
             Q   +     E   V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRG 180

Query: 200 LFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEG 259
           + P  Y+           A + G +       +       Y           L +     
Sbjct: 181 MIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYA 240

Query: 260 AFLIRVSESSPGDFSLSVKCSDGVQH 285
             + +   ++    +L+++  + V+ 
Sbjct: 241 RVIQKRVPNAYDKTALALEVGELVKV 266

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score =  101 bits (252), Expect = 1e-24
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 27/155 (17%)

Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           +  N+   +   WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+
Sbjct: 1   MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHY 60

Query: 287 KVLRD-----------------SSGKFFLWVVKFNSLNELVEYHRTASVSR--------- 320
            +                    S  +  +   +F+SL  L+E+++   +           
Sbjct: 61  IINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 120

Query: 321 -SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRR 354
             Q   +     E   V+AL+DF   +  +L F++
Sbjct: 121 SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK 155

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 98.9 bits (245), Expect = 9e-24
 Identities = 37/208 (17%), Positives = 66/208 (31%), Gaps = 51/208 (24%)

Query: 6   KHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHDWYYGR 64
             DFN   E++L F+K  +L+I +  ++  W+ AE  +GK G+IP  Y+E          
Sbjct: 140 LFDFNGNDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEGKRGMIPVPYVEKYRPASA--- 195

Query: 65  ITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKF 124
                   L+    EG+    +    PG ++     +                       
Sbjct: 196 ----SVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQ----------------- 234

Query: 125 NSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDR 184
                                      P    V         +   L    G+++ VT  
Sbjct: 235 -------------------------NGPIYARVIQKRVPNAYDKTALALEVGELVKVTKI 269

Query: 185 SDQHWWHGEIGARKGLFPATYILNMEDD 212
           +    W GE   ++G FP T++  ++  
Sbjct: 270 NVSGQWEGECNGKRGHFPFTHVRLLDQQ 297

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
              I K   NA  +  L+    +++K+  +      +  E +GK G  P  ++ + +  
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVS-GQWEGECNGKRGHFPFTHVRLLDQQ 297

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score =  130 bits (328), Expect = 3e-37
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 43  GKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSV 98
           GK     + +     ++  H WY G + RA AE +L+N+ +G FL+R       +F++S+
Sbjct: 7   GKAEAEQNWWEGPPQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISI 66

Query: 99  KCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKLRDMVPE 153
           K +  V+H K++             F  L ELVE+++  S+       D  L+    E
Sbjct: 67  KYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A* Length = 138

 Score =  130 bits (328), Expect = 3e-37
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 222 GKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSV 277
           GK     + +     ++  H WY G + RA AE +L+N+ +G FL+R       +F++S+
Sbjct: 7   GKAEAEQNWWEGPPQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISI 66

Query: 278 KCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQ---DVKLRDMVPE 332
           K +  V+H K++             F  L ELVE+++  S+       D  L+    E
Sbjct: 67  KYNVEVKHIKIMTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score =  130 bits (328), Expect = 8e-37
 Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 39/198 (19%)

Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD---GV 104
           + +   +   +Y+  ++R +A +LL       G FL+R S S PG++SL+V+ +D    V
Sbjct: 4   NGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAV 62

Query: 105 QHFKVLRDSS-------GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 157
            H+ + R              +    F  +  L+ + +   +     +      P   +V
Sbjct: 63  CHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVL-TEASLLAAYKKPIIEVV 121

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYR 217
              + FT +   +L F +G+ + +  +++Q WW                           
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA---------------------- 159

Query: 218 AELDGKEGLIPSNYIEMK 235
               G  GL+P+NY++++
Sbjct: 160 ---LGTTGLVPANYVQIQ 174

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 89.8 bits (222), Expect = 1e-21
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 14/143 (9%)

Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSD---GV 283
           + +   +   +Y+  ++R +A +LL       G FL+R S S PG++SL+V+ +D    V
Sbjct: 4   NGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAV 62

Query: 284 QHFKVLRDSS-------GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 336
            H+ + R              +    F  +  L+ + +   +     +      P   +V
Sbjct: 63  CHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVL-TEASLLAAYKKPIIEVV 121

Query: 337 QALYDFTPQEPGELEFRRDLKIK 359
              + FT +   +L F +  +++
Sbjct: 122 VGTFKFTGERETDLPFEQGERLE 144

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 67.5 bits (164), Expect = 1e-13
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK 56
              +    F    E +L F + + L+IL+  +  +W+ A    G  GL+P+NY++++
Sbjct: 119 EVVVGTFKFTGERETDLPFEQGERLEILSKTNQ-DWWEARNALGTTGLVPANYVQIQ 174

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score =  137 bits (347), Expect = 8e-37
 Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 13/146 (8%)

Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIEMKN----H 58
           +A +D+ +  E +LSF+K + L+I+N  +   W   +   G+ G IPSNY+   +     
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 65

Query: 59  DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           +WY+G+ITR ++ERLL  +    G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 66  EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 125

Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRT 136
             SG F++    +FNSL +LV Y+  
Sbjct: 126 LDSGGFYITSRTQFNSLQQLVAYYSK 151

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score =  134 bits (340), Expect = 9e-36
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 44/219 (20%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
              ALYD+  +   +L F++G+ + + + ++  WW                         
Sbjct: 4   TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA----------------------- 40

Query: 216 YRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAERLL--SNKHEGAFLIRVSESS 269
             +   G+ G IPSNY+   +     +WY+G+ITR ++ERLL  +    G FL+R SE++
Sbjct: 41  -HSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETT 99

Query: 270 PGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQD 323
            G + LSV   D      V+H+K+ +  SG F++    +FNSL +LV Y+     +    
Sbjct: 100 KGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSK--HADGLC 157

Query: 324 VKLRDMVP-EECLVQALYDFTPQEPGELEFRRDLKIKRR 361
            +L  + P  +   Q L     + P     R  L+++ +
Sbjct: 158 HRLTTVCPTSKPQTQGLAKDAWEIP-----RESLRLEVK 191

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score =  128 bits (323), Expect = 8e-37
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 54  EMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
            +  + W++G ++R  A +L+        G FL+R SE+  G+  L+       +H ++ 
Sbjct: 5   PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLS 64

Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMVP 152
            +++G+  +  + F S+ +++E+ R   +      S DV L   VP
Sbjct: 65  LNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C* Length = 111

 Score =  128 bits (323), Expect = 8e-37
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 233 EMKNHDWYYGRITRADAERLL---SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
            +  + W++G ++R  A +L+        G FL+R SE+  G+  L+       +H ++ 
Sbjct: 5   PLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLS 64

Query: 290 RDSSGKFFLWVVKFNSLNELVEYHRTASV----SRSQDVKLRDMVP 331
            +++G+  +  + F S+ +++E+ R   +      S DV L   VP
Sbjct: 65  LNAAGQCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSYVP 110

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score =  137 bits (347), Expect = 1e-36
 Identities = 49/149 (32%), Positives = 86/149 (57%), Gaps = 16/149 (10%)

Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE----MKN 57
           +A +D+ A   ++LSF+K   + +L  E+   W++A      KEG IPSNY+     ++ 
Sbjct: 12  VALYDYEAIHHEDLSFQKGDQMVVL--EESGEWWKARSLATRKEGYIPSNYVARVDSLET 69

Query: 58  HDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVL 110
            +W++  I+R DAER L       G+F+IR SE++ G +SLSV+  D      V+H+K+ 
Sbjct: 70  EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIR 129

Query: 111 RDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
              +G F++     F++L ELV++++  +
Sbjct: 130 TLDNGGFYISPRSTFSTLQELVDHYKKGN 158

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score =  135 bits (342), Expect = 5e-36
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 46/223 (20%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
               +V ALYD+      +L F++GD + V + S   WW                     
Sbjct: 6   GIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKA------------------- 45

Query: 212 DMNWYRAELDGKEGLIPSNYIE----MKNHDWYYGRITRADAERLLSNKH--EGAFLIRV 265
                R+    KEG IPSNY+     ++  +W++  I+R DAER L       G+F+IR 
Sbjct: 46  -----RSLATRKEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRD 100

Query: 266 SESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVS 319
           SE++ G +SLSV+  D      V+H+K+    +G F++     F++L ELV++++  +  
Sbjct: 101 SETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDG 160

Query: 320 RSQDVKLRDMVPEECLVQALYDFTPQEPGELEF-RRDLKIKRR 361
             Q  KL                 P E    E  R  LK++++
Sbjct: 161 LCQ--KLSVPCMSSK------PQKPWEKDAWEIPRESLKLEKK 195

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score =  138 bits (349), Expect = 1e-36
 Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 36/194 (18%)

Query: 136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG 195
            +S + +   +   +        ALYD+  +   +L F++G+ + + + ++  WW     
Sbjct: 67  NSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLA--- 123

Query: 196 ARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN----HDWYYGRITRADAER 251
                                 +   G+ G IPSNY+   +     +WY+G+ITR ++ER
Sbjct: 124 ---------------------HSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESER 162

Query: 252 LL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFLWV-VKF 303
           LL  +    G FL+R SE++ G + LSV   D      V+H+K+ +  SG F++    +F
Sbjct: 163 LLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQF 222

Query: 304 NSLNELVEYHRTAS 317
           NSL +LV Y+   +
Sbjct: 223 NSLQQLVAYYSKHA 236

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score =  136 bits (343), Expect = 7e-36
 Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 13/148 (8%)

Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIEMKN----H 58
           +A +D+ +  E +LSF+K + L+I+N  +   W   +   G+ G IPSNY+   +     
Sbjct: 89  VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAE 148

Query: 59  DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           +WY+G+ITR ++ERLL  +    G FL+R SE++ G + LSV   D      V+H+K+ +
Sbjct: 149 EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRK 208

Query: 112 DSSGKFFLWV-VKFNSLNELVEYHRTAS 138
             SG F++    +FNSL +LV Y+   +
Sbjct: 209 LDSGGFYITSRTQFNSLQQLVAYYSKHA 236

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score =  127 bits (321), Expect = 2e-36
 Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 43  GKEGLIPSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKC 100
           G  G   +    ++   W++G I RADAE+ L  S    GAFLIR SES  GDFSLSV  
Sbjct: 1   GSSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLD 60

Query: 101 SDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
              V+H+++ R   G FFL     F++LNE V Y+ T S
Sbjct: 61  EGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTS 99

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 121

 Score =  127 bits (321), Expect = 2e-36
 Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKC 279
           G  G   +    ++   W++G I RADAE+ L  S    GAFLIR SES  GDFSLSV  
Sbjct: 1   GSSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLD 60

Query: 280 SDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
              V+H+++ R   G FFL     F++LNE V Y+ T S
Sbjct: 61  EGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTS 99

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score =  127 bits (321), Expect = 3e-36
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 4/118 (3%)

Query: 42  DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC 100
            G  G    N    ++  WYY R++R +AE +L     +GAFLIR  E     ++++ + 
Sbjct: 3   SGSSGDPVPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREG-TDSYAITFRA 61

Query: 101 SDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQ 158
              V+H ++ RD           F SL ELV Y+   ++ R   ++LR  V  E L +
Sbjct: 62  RGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALYR--KMRLRYPVTPELLER 117

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus} Length = 124

 Score =  127 bits (321), Expect = 3e-36
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 4/118 (3%)

Query: 221 DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC 279
            G  G    N    ++  WYY R++R +AE +L     +GAFLIR  E     ++++ + 
Sbjct: 3   SGSSGDPVPNPNPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREG-TDSYAITFRA 61

Query: 280 SDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQ 337
              V+H ++ RD           F SL ELV Y+   ++ R   ++LR  V  E L +
Sbjct: 62  RGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHALYR--KMRLRYPVTPELLER 117

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score =  125 bits (316), Expect = 1e-35
 Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 55  MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S 
Sbjct: 2   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61

Query: 115 GKFFLWV-VKFNSLNELVEYHRTAS 138
           GK ++    +FN+L ELV +H T +
Sbjct: 62  GKLYVSSESRFNTLAELVHHHSTVA 86

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A Length = 112

 Score =  125 bits (316), Expect = 1e-35
 Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S 
Sbjct: 2   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61

Query: 294 GKFFLWV-VKFNSLNELVEYHRTAS 317
           GK ++    +FN+L ELV +H T +
Sbjct: 62  GKLYVSSESRFNTLAELVHHHSTVA 86

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score =  125 bits (316), Expect = 1e-35
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 9/104 (8%)

Query: 43  GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--- 98
           G  G   +    ++ ++WY+  ITR  AE LL  +  EGAF++R S    G +++SV   
Sbjct: 1   GSSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMG 59

Query: 99  ---KCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
                   ++H+++ ++ SG++++     F S+ EL+ YH+  +
Sbjct: 60  ARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA 103

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 125

 Score =  125 bits (316), Expect = 1e-35
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 9/104 (8%)

Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSV--- 277
           G  G   +    ++ ++WY+  ITR  AE LL  +  EGAF++R S    G +++SV   
Sbjct: 1   GSSGSSGNKITNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSR-HLGSYTISVFMG 59

Query: 278 ---KCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
                   ++H+++ ++ SG++++     F S+ EL+ YH+  +
Sbjct: 60  ARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA 103

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score =  125 bits (315), Expect = 6e-35
 Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 21/151 (13%)

Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
           L+ +   +++   +Y+  +T  +A  LLS +  G FLIR S      F+LSVK   G ++
Sbjct: 12  LVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKN 71

Query: 286 FKVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVSRSQDVKLRDMV------- 330
            ++  +  G F L         V +F+ + +LV ++     + S  +   +         
Sbjct: 72  LRIQCE-GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQP 130

Query: 331 -----PEECLVQALYDFTPQEPGELEFRRDL 356
                P     +A Y ++  E   L   R L
Sbjct: 131 PAQALPGSTPKRAYYIYSGGEKIPLVLSRPL 161

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus} Length = 164

 Score =  125 bits (314), Expect = 7e-35
 Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 21/149 (14%)

Query: 47  LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
           L+ +   +++   +Y+  +T  +A  LLS +  G FLIR S      F+LSVK   G ++
Sbjct: 12  LVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKN 71

Query: 107 FKVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVSRSQDVKLRDMV------- 151
            ++  +  G F L         V +F+ + +LV ++     + S  +   +         
Sbjct: 72  LRIQCE-GGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPEQP 130

Query: 152 -----PEECLVQALYDFTPQEPGELEFRR 175
                P     +A Y ++  E   L   R
Sbjct: 131 PAQALPGSTPKRAYYIYSGGEKIPLVLSR 159

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score =  123 bits (310), Expect = 1e-34
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 18/120 (15%)

Query: 42  DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC 100
            G  G++P          W +G ITR+ AE LLS    +G+FL+R SES    ++L V  
Sbjct: 3   SGSSGMVPC---------WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLY 53

Query: 101 SDGVQHFKVLRDSSGKFFLWV------VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
            + V  +++L +   KF +          F  L++L+E+++  ++       L+  VP E
Sbjct: 54  RNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLV--THLQYPVPLE 111

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 119

 Score =  123 bits (310), Expect = 1e-34
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 18/120 (15%)

Query: 221 DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC 279
            G  G++P          W +G ITR+ AE LLS    +G+FL+R SES    ++L V  
Sbjct: 3   SGSSGMVPC---------WNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLY 53

Query: 280 SDGVQHFKVLRDSSGKFFLWV------VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
            + V  +++L +   KF +          F  L++L+E+++  ++       L+  VP E
Sbjct: 54  RNCVYTYRILPNEDDKFTVQASEGVSMRFFTKLDQLIEFYKKENMGLV--THLQYPVPLE 111

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score =  122 bits (309), Expect = 1e-34
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 43  GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 102
           G  G       +    +W++G I+R DAE LL ++  G+FLIRVS S  G ++LS K   
Sbjct: 1   GSSGSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQS 59

Query: 103 GVQHFKVLRDSSGKFFLWV--VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
              HF V     G F +    V   SL+ LV +H+   +   +   L     ++
Sbjct: 60  SCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIE-PRRELLTQPCRQK 112

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 119

 Score =  122 bits (309), Expect = 1e-34
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD 281
           G  G       +    +W++G I+R DAE LL ++  G+FLIRVS S  G ++LS K   
Sbjct: 1   GSSGSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQS 59

Query: 282 GVQHFKVLRDSSGKFFLWV--VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
              HF V     G F +    V   SL+ LV +H+   +   +   L     ++
Sbjct: 60  SCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIE-PRRELLTQPCRQK 112

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score =  121 bits (307), Expect = 2e-34
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 54  EMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
            M +  W++  IT  +AE LL  +  +G+FL R S+S+PGDF+LSV+ +  V H K+   
Sbjct: 3   HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT 62

Query: 113 SSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 143
                     KF +L ELV+Y+        +
Sbjct: 63  GDYYDLYGGEKFATLAELVQYYMEHHGQLKE 93

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A Length = 109

 Score =  121 bits (307), Expect = 2e-34
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 233 EMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
            M +  W++  IT  +AE LL  +  +G+FL R S+S+PGDF+LSV+ +  V H K+   
Sbjct: 3   HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT 62

Query: 292 SSGKFFLWVVKFNSLNELVEYHRTASVSRSQ 322
                     KF +L ELV+Y+        +
Sbjct: 63  GDYYDLYGGEKFATLAELVQYYMEHHGQLKE 93

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score =  121 bits (305), Expect = 3e-34
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           +++   W++G+++R +AE LL  +  G FL+R S ++PG + L+   S   +H  +  D 
Sbjct: 3   QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-VDP 59

Query: 114 SGKFFLWVVKFNSLNELVEYHRTAS---VSRSQDVKLRDMVPEE 154
            G       +F S++ L+ YH       +S   ++ L+  V  +
Sbjct: 60  EGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERK 103

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A* Length = 104

 Score =  121 bits (305), Expect = 3e-34
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           +++   W++G+++R +AE LL  +  G FL+R S ++PG + L+   S   +H  +  D 
Sbjct: 3   QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-VDP 59

Query: 293 SGKFFLWVVKFNSLNELVEYHRTAS---VSRSQDVKLRDMVPEE 333
            G       +F S++ L+ YH       +S   ++ L+  V  +
Sbjct: 60  EGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERK 103

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score =  121 bits (305), Expect = 3e-34
 Identities = 29/85 (34%), Positives = 50/85 (58%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           ++    W++G+ITR  AERLL     G FL+R S + PGD++L V     V+H++++  +
Sbjct: 4   KLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA 63

Query: 114 SGKFFLWVVKFNSLNELVEYHRTAS 138
           S       V F +L +LVE++ + +
Sbjct: 64  SKLSIDEEVYFENLMQLVEHYTSDA 88

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A Length = 106

 Score =  121 bits (305), Expect = 3e-34
 Identities = 29/85 (34%), Positives = 50/85 (58%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           ++    W++G+ITR  AERLL     G FL+R S + PGD++L V     V+H++++  +
Sbjct: 4   KLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHA 63

Query: 293 SGKFFLWVVKFNSLNELVEYHRTAS 317
           S       V F +L +LVE++ + +
Sbjct: 64  SKLSIDEEVYFENLMQLVEHYTSDA 88

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score =  120 bits (303), Expect = 8e-34
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 49  PSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 104
             ++      +   DWY+G I R +A+ LL  K +G FL+R S   PG++ LSV      
Sbjct: 4   HHHHHSHMKPLAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQR 61

Query: 105 QHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTAS--VSRSQDVKLRDMVPEE 154
           +HF + +     +      F+++ +L+++H T    +++   V L + +P++
Sbjct: 62  RHFII-QYVDNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 116

 Score =  120 bits (303), Expect = 8e-34
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 228 PSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGV 283
             ++      +   DWY+G I R +A+ LL  K +G FL+R S   PG++ LSV      
Sbjct: 4   HHHHHSHMKPLAEQDWYHGAIPRIEAQELL--KKQGDFLVRESHGKPGEYVLSVYSDGQR 61

Query: 284 QHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTAS--VSRSQDVKLRDMVPEE 333
           +HF + +     +      F+++ +L+++H T    +++   V L + +P++
Sbjct: 62  RHFII-QYVDNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score =  119 bits (302), Expect = 9e-34
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 55  MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           +    W++G+I+  +A + L    +G FL+R S   PGD+ L V     V H++VL    
Sbjct: 2   LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG 61

Query: 115 GKFFLWVVKFNSLNELVEYHRTAS 138
                  V F +L ++VE++    
Sbjct: 62  HLTIDEAVFFCNLMDMVEHYSKDK 85

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} PDB: 1jwo_A Length = 98

 Score =  119 bits (302), Expect = 9e-34
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           +    W++G+I+  +A + L    +G FL+R S   PGD+ L V     V H++VL    
Sbjct: 2   LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDG 61

Query: 294 GKFFLWVVKFNSLNELVEYHRTAS 317
                  V F +L ++VE++    
Sbjct: 62  HLTIDEAVFFCNLMDMVEHYSKDK 85

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score =  122 bits (306), Expect = 2e-33
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 37/180 (20%)

Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
              ++ LV AL+ + P   G+L F +G+ + + +     WW                   
Sbjct: 8   SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILE-QSGEWWKA----------------- 49

Query: 210 EDDMNWYRAELDGKEGLIPSNYI----EMKNHDWYYGRITRADAERLL--SNKHEGAFLI 263
                  ++   G+EG IP N++     ++   W++  ++R DAER L       G+FLI
Sbjct: 50  -------QSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLI 102

Query: 264 RVSESSPGDFSLSVKCSDG-----VQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 317
           R SES+ G FSLSV+  D      V+H+K+    +G F++   + F  L+ELV ++  AS
Sbjct: 103 RESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNAS 162

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score =  121 bits (305), Expect = 2e-33
 Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 16/149 (10%)

Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYI----EMKN 57
           IA H +  + + +L F K + L+IL       W++A+    G+EG IP N++     ++ 
Sbjct: 16  IALHSYEPSHDGDLGFEKGEQLRILE--QSGEWWKAQSLTTGQEGFIPFNFVAKANSLEP 73

Query: 58  HDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVL 110
             W++  ++R DAER L       G+FLIR SES+ G FSLSV+  D      V+H+K+ 
Sbjct: 74  EPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIR 133

Query: 111 RDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
              +G F++   + F  L+ELV ++  AS
Sbjct: 134 NLDNGGFYISPRITFPGLHELVRHYTNAS 162

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score =  119 bits (300), Expect = 2e-33
 Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 5/99 (5%)

Query: 57  NHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           +  W++G I+R++A R L       GAFLIRVSE    D+ LSV+ +  V+H+K+ R + 
Sbjct: 1   SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG 60

Query: 115 GKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
           G+  L   V F SL ELV YHR  S+S    ++L     
Sbjct: 61  GRLHLNEAVSFLSLPELVNYHRAQSLSH--GLRLAAPCR 97

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 100

 Score =  119 bits (300), Expect = 2e-33
 Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 5/99 (5%)

Query: 236 NHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           +  W++G I+R++A R L       GAFLIRVSE    D+ LSV+ +  V+H+K+ R + 
Sbjct: 1   SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG 60

Query: 294 GKFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 331
           G+  L   V F SL ELV YHR  S+S    ++L     
Sbjct: 61  GRLHLNEAVSFLSLPELVNYHRAQSLSH--GLRLAAPCR 97

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score =  119 bits (300), Expect = 2e-33
 Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 57  NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
             +WYYG +TR  AE  L     EG FLIR SESSP DFS+S+K S   +HFKV +    
Sbjct: 4   GSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKV-QLVDN 62

Query: 116 KFFLWVVKFNSLNELVEYHRTASVSRSQD 144
            + +   +F++++ELVE+++ A +  S+ 
Sbjct: 63  VYCIGQRRFHTMDELVEHYKKAPIFTSEH 91

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A* Length = 102

 Score =  119 bits (300), Expect = 2e-33
 Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 236 NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
             +WYYG +TR  AE  L     EG FLIR SESSP DFS+S+K S   +HFKV +    
Sbjct: 4   GSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKV-QLVDN 62

Query: 295 KFFLWVVKFNSLNELVEYHRTASVSRSQD 323
            + +   +F++++ELVE+++ A +  S+ 
Sbjct: 63  VYCIGQRRFHTMDELVEHYKKAPIFTSEH 91

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score =  125 bits (314), Expect = 2e-33
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 29/196 (14%)

Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKG 199
               +  LR    +   +    +    +  +L   R   +    +               
Sbjct: 113 RTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQRKIN------ 166

Query: 200 LFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH----DWYYGRITRADAERLLSN 255
                          W   + + ++        +   H     WY G+I R  AE +LS 
Sbjct: 167 --------------EWLGIKNETEDQYSLMEDEDALPHHEERTWYVGKINRTQAEEMLSG 212

Query: 256 KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHR 314
           K +G FLIR S S  G ++ SV      +H  + R ++G  F      + SL ELV +++
Sbjct: 213 KRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQ 271

Query: 315 TASVSRSQD---VKLR 327
            AS+ +  D   V L 
Sbjct: 272 HASLVQHNDALTVTLA 287

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 302

 Score =  121 bits (305), Expect = 4e-32
 Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 14/161 (8%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKIL-----NMEDDMNWYRAELDGKEGLIPSNYIEM 55
            E   + +       +L   + Q L  L            W   + + ++        + 
Sbjct: 128 REIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQRKINEWLGIKNETEDQYSLMEDEDA 187

Query: 56  KNH----DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR 111
             H     WY G+I R  AE +LS K +G FLIR S S  G ++ SV      +H  + R
Sbjct: 188 LPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYR 246

Query: 112 DSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQD---VKLR 148
            ++G  F      + SL ELV +++ AS+ +  D   V L 
Sbjct: 247 TATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLA 287

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score =  117 bits (294), Expect = 1e-32
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 55  MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           M     Y+G+I+R   E+LL +   +G++L+R SES PG + L V     +  ++V +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 114 SGKFFL------WVVKFNSLNELVEYHRTAS 138
           +G +            F  +  L+   +   
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A* Length = 104

 Score =  117 bits (294), Expect = 1e-32
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 234 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           M     Y+G+I+R   E+LL +   +G++L+R SES PG + L V     +  ++V +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 293 SGKFFL------WVVKFNSLNELVEYHRTAS 317
           +G +            F  +  L+   +   
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score =  116 bits (292), Expect = 3e-32
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 108
           P  + +     W  G   R  AE LL  K +G FL+R S S  G ++ SV     V+H  
Sbjct: 3   PIPHHDE--KTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCV 59

Query: 109 VLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQD---VKLR 148
           + + ++G  F      ++SL ELV +++  S+ +  D   V L 
Sbjct: 60  INKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLA 103

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A Length = 112

 Score =  116 bits (292), Expect = 3e-32
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
           P  + +     W  G   R  AE LL  K +G FL+R S S  G ++ SV     V+H  
Sbjct: 3   PIPHHDE--KTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCV 59

Query: 288 VLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQD---VKLR 327
           + + ++G  F      ++SL ELV +++  S+ +  D   V L 
Sbjct: 60  INKTATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLA 103

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score =  116 bits (292), Expect = 4e-32
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 55  MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           M     Y+G+I+R   E+LL +   +G++L+R SES PG + L V     +  ++V +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 114 SGKFFL------WVVKFNSLNELVEYHRTAS 138
           +G +            F  +  L+   +   
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A Length = 128

 Score =  116 bits (292), Expect = 4e-32
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 234 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           M     Y+G+I+R   E+LL +   +G++L+R SES PG + L V     +  ++V +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 293 SGKFFL------WVVKFNSLNELVEYHRTAS 317
           +G +            F  +  L+   +   
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQKPD 91

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score =  116 bits (292), Expect = 5e-32
 Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFK 108
           +N + ++N +WY+G I+R +    L +  +G FL+R + +   GD++L+++     +  K
Sbjct: 3   NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62

Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 148
           +        F   + F+S+ EL+ ++R  S+++      VKL 
Sbjct: 63  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLL 105

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A Length = 120

 Score =  116 bits (292), Expect = 5e-32
 Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFK 287
           +N + ++N +WY+G I+R +    L +  +G FL+R + +   GD++L+++     +  K
Sbjct: 3   NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62

Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 327
           +        F   + F+S+ EL+ ++R  S+++      VKL 
Sbjct: 63  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLL 105

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score =  115 bits (289), Expect = 6e-32
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 57  NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
           +  +Y+G +T+ + E LL     +G FLIR SES PG   L V     V  +++ R+  G
Sbjct: 2   DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61

Query: 116 KFFLW------VVKFNSLNELVEYHRTAS 138
            + +          F +L ELV  +    
Sbjct: 62  YYRIETDAHTPRTIFPNLQELVSKYGKPG 90

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1 Length = 103

 Score =  115 bits (289), Expect = 6e-32
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 236 NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
           +  +Y+G +T+ + E LL     +G FLIR SES PG   L V     V  +++ R+  G
Sbjct: 2   DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHG 61

Query: 295 KFFLW------VVKFNSLNELVEYHRTAS 317
            + +          F +L ELV  +    
Sbjct: 62  YYRIETDAHTPRTIFPNLQELVSKYGKPG 90

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score =  116 bits (291), Expect = 3e-31
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 35  NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDF 94
                E    + ++  + +++ N+  Y+G + +  AE LL  K EG FL+R S      F
Sbjct: 11  VDLGTENLYFQSMLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLF 70

Query: 95  SLSVKCSDGVQHFKVLRDSSGKFFLW-----VVKFNSLNELVEYHRTASVSRSQDVKLRD 149
           S+S +      H ++ +  +  F        V     +  L+E+++  S     +  L  
Sbjct: 71  SVSFRRYSRSLHARIEQW-NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLST 129

Query: 150 MVP 152
            + 
Sbjct: 130 PLI 132

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 187

 Score =  116 bits (291), Expect = 3e-31
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 214 NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDF 273
                E    + ++  + +++ N+  Y+G + +  AE LL  K EG FL+R S      F
Sbjct: 11  VDLGTENLYFQSMLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLF 70

Query: 274 SLSVKCSDGVQHFKVLRDSSGKFFLW-----VVKFNSLNELVEYHRTASVSRSQDVKLRD 328
           S+S +      H ++ +  +  F        V     +  L+E+++  S     +  L  
Sbjct: 71  SVSFRRYSRSLHARIEQW-NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLST 129

Query: 329 MVP 331
            + 
Sbjct: 130 PLI 132

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 56  KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           +   W++GRI+R ++ R++  +   +G FL+R S+S+P  F L++     +++F++L   
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62

Query: 114 SGKFFLWVV-----KFNSLNELVEYHRTAS 138
                 + +     KF+ L +LV++++   
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQLNK 92

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A Length = 105

 Score =  111 bits (280), Expect = 1e-30
 Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 7/90 (7%)

Query: 235 KNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           +   W++GRI+R ++ R++  +   +G FL+R S+S+P  F L++     +++F++L   
Sbjct: 3   RTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCE 62

Query: 293 SGKFFLWVV-----KFNSLNELVEYHRTAS 317
                 + +     KF+ L +LV++++   
Sbjct: 63  DDGQTFFSLDDGNTKFSDLIQLVDFYQLNK 92

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score =  113 bits (285), Expect = 2e-30
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 48  IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           +     E+    WY+G +T  +A+  L    EG FLIR S  S    ++SVK S G  + 
Sbjct: 7   LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNL 66

Query: 108 KVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEEC-LVQ 158
           ++     GKF L         + +F+S+  L++Y+      +    +          L +
Sbjct: 67  RI-EYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTK 125

Query: 159 ALYDFTP 165
            LY   P
Sbjct: 126 PLYTSAP 132

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1 Length = 169

 Score =  113 bits (285), Expect = 2e-30
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           +     E+    WY+G +T  +A+  L    EG FLIR S  S    ++SVK S G  + 
Sbjct: 7   LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNL 66

Query: 287 KVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEEC-LVQ 337
           ++     GKF L         + +F+S+  L++Y+      +    +          L +
Sbjct: 67  RI-EYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTK 125

Query: 338 ALYDFTP 344
            LY   P
Sbjct: 126 PLYTSAP 132

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score =  111 bits (279), Expect = 2e-30
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 55  MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 107
           ++   W++  ++R DAER L       G+FLIR SES+ G FSLSV+  D      V+H+
Sbjct: 1   LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60

Query: 108 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
           K+    +G F++   + F  L+ELV ++  AS
Sbjct: 61  KIRNLDNGGFYISPRITFPGLHELVRHYTNAS 92

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A* Length = 105

 Score =  111 bits (279), Expect = 2e-30
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 286
           ++   W++  ++R DAER L       G+FLIR SES+ G FSLSV+  D      V+H+
Sbjct: 1   LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60

Query: 287 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
           K+    +G F++   + F  L+ELV ++  AS
Sbjct: 61  KIRNLDNGGFYISPRITFPGLHELVRHYTNAS 92

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score =  110 bits (278), Expect = 3e-30
 Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 55  MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 107
           ++  +WY+G++ R DAER L       G FLIR SE++ G +SLS++  D      V+H+
Sbjct: 2   IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61

Query: 108 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
           K+ +  +G +++    +F +L +LV+++   +
Sbjct: 62  KIRKLDNGGYYITTRAQFETLQQLVQHYSERA 93

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F* Length = 106

 Score =  110 bits (278), Expect = 3e-30
 Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 286
           ++  +WY+G++ R DAER L       G FLIR SE++ G +SLS++  D      V+H+
Sbjct: 2   IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 61

Query: 287 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
           K+ +  +G +++    +F +L +LV+++   +
Sbjct: 62  KIRKLDNGGYYITTRAQFETLQQLVQHYSERA 93

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score =  111 bits (279), Expect = 3e-30
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQH 106
             +    +   W++GRI+R +++RL+  +   +G FL+R S+ +P  F LS+     V+H
Sbjct: 5   SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKH 64

Query: 107 FKVLR-DSSGKFFLWV----VKFNSLNELVEYHRT 136
           + +L  +  G+ +  +     +F  L +LVE+H+ 
Sbjct: 65  YLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQL 99

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A Length = 117

 Score =  111 bits (279), Expect = 3e-30
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKH--EGAFLIRVSESSPGDFSLSVKCSDGVQH 285
             +    +   W++GRI+R +++RL+  +   +G FL+R S+ +P  F LS+     V+H
Sbjct: 5   SLSAAIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKH 64

Query: 286 FKVLR-DSSGKFFLWV----VKFNSLNELVEYHRT 315
           + +L  +  G+ +  +     +F  L +LVE+H+ 
Sbjct: 65  YLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQL 99

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score =  111 bits (279), Expect = 5e-30
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 17/127 (13%)

Query: 42  DGKEGLIPSNYIEMKN----HDWYYGRI-TRADAERLL------SNKHEGAFLIRVSESS 90
            G  G  P              W++ ++ +R  AE+LL      +   +G FL+R SE+ 
Sbjct: 3   SGSSG-EPVQDTPPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETF 61

Query: 91  PGDFSLSVKCSDGVQHFKVLR---DSSGKFFLW-VVKFNSLNELVEYHRTAS-VSRSQDV 145
           P D++LS   S  VQH ++     +   K++L   + FNS+  L++++R A       ++
Sbjct: 62  PNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFEL 121

Query: 146 KLRDMVP 152
           +L D VP
Sbjct: 122 RLTDPVP 128

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus} Length = 138

 Score =  111 bits (279), Expect = 5e-30
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 17/127 (13%)

Query: 221 DGKEGLIPSNYIEMKN----HDWYYGRI-TRADAERLL------SNKHEGAFLIRVSESS 269
            G  G  P              W++ ++ +R  AE+LL      +   +G FL+R SE+ 
Sbjct: 3   SGSSG-EPVQDTPPTELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETF 61

Query: 270 PGDFSLSVKCSDGVQHFKVLR---DSSGKFFLW-VVKFNSLNELVEYHRTAS-VSRSQDV 324
           P D++LS   S  VQH ++     +   K++L   + FNS+  L++++R A       ++
Sbjct: 62  PNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFEL 121

Query: 325 KLRDMVP 331
           +L D VP
Sbjct: 122 RLTDPVP 128

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score =  111 bits (278), Expect = 7e-30
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 48  IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           +     ++    WY+G ITR +AE  L+N  +G+FL+R S       SLS +      H 
Sbjct: 14  LTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHT 73

Query: 108 KVLRDSSGKFFLW----VVKFNSLNELVEYHRTASVS 140
           ++    +G+F  +    V    S+ +L+E+    S +
Sbjct: 74  RIEHS-NGRFSFYEQPDVEGHTSIVDLIEHSIGDSEN 109

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens} Length = 141

 Score =  111 bits (278), Expect = 7e-30
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           +     ++    WY+G ITR +AE  L+N  +G+FL+R S       SLS +      H 
Sbjct: 14  LTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHT 73

Query: 287 KVLRDSSGKFFLW----VVKFNSLNELVEYHRTASVS 319
           ++    +G+F  +    V    S+ +L+E+    S +
Sbjct: 74  RIEHS-NGRFSFYEQPDVEGHTSIVDLIEHSIGDSEN 109

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score =  109 bits (275), Expect = 1e-29
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCS----D 102
           P   +E+    W++  I+R DAER L       G+FLIR SES+ G FSLSVK      +
Sbjct: 5   PVETLEV--EKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62

Query: 103 GVQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
            V+H+K+    +G +++   + F +L  LV+++    
Sbjct: 63  VVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKG 99

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A Length = 114

 Score =  109 bits (275), Expect = 1e-29
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCS----D 281
           P   +E+    W++  I+R DAER L       G+FLIR SES+ G FSLSVK      +
Sbjct: 5   PVETLEV--EKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62

Query: 282 GVQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 317
            V+H+K+    +G +++   + F +L  LV+++    
Sbjct: 63  VVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKG 99

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score =  107 bits (270), Expect = 4e-29
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 28/126 (22%)

Query: 134 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE 193
             ++S S         +     +  ALYD+  +   +L F++G+   + + ++  WW   
Sbjct: 7   GASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEA- 65

Query: 194 IGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE----MKNHDWYYGRITRADA 249
                                  R+   GK G IPSNY+     ++  +WY+G++ R DA
Sbjct: 66  -----------------------RSIATGKSGYIPSNYVVPADSIQAEEWYFGKMGRKDA 102

Query: 250 ERLLSN 255
           E   S+
Sbjct: 103 ESGPSS 108

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score =  100 bits (251), Expect = 3e-26
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 4   IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIE----MKNH 58
           +A +D+ A   ++LSF+K +  +I+N  +   W    +  GK G IPSNY+     ++  
Sbjct: 31  VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSIQAE 90

Query: 59  DWYYGRITRADAERLLSN 76
           +WY+G++ R DAE   S+
Sbjct: 91  EWYFGKMGRKDAESGPSS 108

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 313 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
             ++S S         +     +  ALYD+  +   +L F++  + +
Sbjct: 7   GASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQ 53

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score =  107 bits (270), Expect = 6e-29
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
            +    WY+G I RA+   LL   H G FL+R S+    ++ LSV      +HF + +  
Sbjct: 12  PLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQ-GKQEYVLSVLWDGLPRHFII-QSL 67

Query: 114 SGKFFLWVVKFNSLNELVEYHRT--ASVSRSQDVKLRDMVP 152
              + L    F S+  L+++  +    +++   V L   VP
Sbjct: 68  DNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVP 108

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A Length = 114

 Score =  107 bits (270), Expect = 6e-29
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
            +    WY+G I RA+   LL   H G FL+R S+    ++ LSV      +HF + +  
Sbjct: 12  PLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQ-GKQEYVLSVLWDGLPRHFII-QSL 67

Query: 293 SGKFFLWVVKFNSLNELVEYHRT--ASVSRSQDVKLRDMVP 331
              + L    F S+  L+++  +    +++   V L   VP
Sbjct: 68  DNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVP 108

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score =  108 bits (270), Expect = 1e-28
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 48  IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           + +   +++   +Y+  +T  +A  LLS +  G FLIR S      F+LSVK   G ++ 
Sbjct: 24  VVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNL 83

Query: 108 KVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVS 140
           ++ +   G F L         V +F+ + +LV ++      
Sbjct: 84  RI-QXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQAL 123

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus} Length = 152

 Score =  108 bits (270), Expect = 1e-28
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           + +   +++   +Y+  +T  +A  LLS +  G FLIR S      F+LSVK   G ++ 
Sbjct: 24  VVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNL 83

Query: 287 KVLRDSSGKFFLW--------VVKFNSLNELVEYHRTASVS 319
           ++ +   G F L         V +F+ + +LV ++      
Sbjct: 84  RI-QXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYMPPQAL 123

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score =  106 bits (265), Expect = 2e-28
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---- 115
           WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +          
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61

Query: 116 -------------KFFLWVVKFNSLNELVEYHRTASVS 140
                        +  +   +F+SL  L+E+++   + 
Sbjct: 62  PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLD 99

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 Length = 109

 Score =  106 bits (265), Expect = 2e-28
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---- 294
           WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +          
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61

Query: 295 -------------KFFLWVVKFNSLNELVEYHRTASVS 319
                        +  +   +F+SL  L+E+++   + 
Sbjct: 62  PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLD 99

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score =  106 bits (266), Expect = 2e-28
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 55  MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHF 107
           + ++DW+ G I+R+ +E+LL  K  EGAF++R S    G +++S+           V+H+
Sbjct: 8   LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHY 66

Query: 108 KVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 138
            V  ++  K +L     F+S+ +L+ YH+  S
Sbjct: 67  HVHTNAENKLYLAENYCFDSIPKLIHYHQHNS 98

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens} Length = 110

 Score =  106 bits (266), Expect = 2e-28
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHF 286
           + ++DW+ G I+R+ +E+LL  K  EGAF++R S    G +++S+           V+H+
Sbjct: 8   LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSS-QVGMYTVSLFSKAVNDKKGTVKHY 66

Query: 287 KVLRDSSGKFFLWV-VKFNSLNELVEYHRTAS 317
            V  ++  K +L     F+S+ +L+ YH+  S
Sbjct: 67  HVHTNAENKLYLAENYCFDSIPKLIHYHQHNS 98

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score =  108 bits (271), Expect = 6e-28
 Identities = 54/290 (18%), Positives = 103/290 (35%), Gaps = 82/290 (28%)

Query: 58  HDWYYGRIT-----RADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
             W++G++      R  AERLL+           + +  G F              ++R+
Sbjct: 4   EKWFHGKLGAGRDGRHIAERLLTEY------CIETGAPDGSF--------------LVRE 43

Query: 113 SS---GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPG 169
           S    G + L                  S  R+  V+        C + +      Q+ G
Sbjct: 44  SETFVGDYTL------------------SFWRNGKVQ-------HCRIHSR-----QDAG 73

Query: 170 ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPS 229
             +F   D +      D    +                     +     E + +      
Sbjct: 74  TPKFFLTDNLVFDSLYDLITHY-------------------QQVPLRCNEFEMRLSEPVP 114

Query: 230 NYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV 288
                ++ +WY+  +TRA AE +L     +GAFL+R   + P  +++S +    ++H +V
Sbjct: 115 QTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRV 173

Query: 289 LRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQA 338
            ++      L   +F+SL +L+ Y+    + R   +KLR  + EE L + 
Sbjct: 174 QQE-GQTVMLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEEALEKI 220

>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition, tandem SH2 domains, A analog, ATP-binding, craniosynostosis, disease mutation; HET: PTR DVT ACP; 2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A* Length = 226

 Score =  106 bits (265), Expect = 4e-27
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 27  ILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIR 85
           ++     +     E + +           ++ +WY+  +TRA AE +L     +GAFL+R
Sbjct: 91  LITHYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVR 150

Query: 86  VSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDV 145
              + P  +++S +    ++H +V ++      L   +F+SL +L+ Y+    + R   +
Sbjct: 151 KR-NEPNSYAISFRAEGKIKHCRVQQE-GQTVMLGNSEFDSLVDLISYYEKHPLYR--KM 206

Query: 146 KLRDMVPEECLVQA 159
           KLR  + EE L + 
Sbjct: 207 KLRYPINEEALEKI 220

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score =  104 bits (262), Expect = 1e-27
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 13/114 (11%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG---- 103
             + IEM  ++WY   +TR+ AE+LL  +  EG F++R S S  G +++SV         
Sbjct: 4   AEDSIEM--YEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQ 60

Query: 104 --VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
             ++H+ V      +++L     F+++ EL+ YH+  S       +L+  V ++
Sbjct: 61  GVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGL--ISRLKYPVSQQ 112

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens} Length = 125

 Score =  104 bits (262), Expect = 1e-27
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 13/114 (11%)

Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG---- 282
             + IEM  ++WY   +TR+ AE+LL  +  EG F++R S S  G +++SV         
Sbjct: 4   AEDSIEM--YEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQ 60

Query: 283 --VQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
             ++H+ V      +++L     F+++ EL+ YH+  S       +L+  V ++
Sbjct: 61  GVIRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGL--ISRLKYPVSQQ 112

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score =  104 bits (260), Expect = 3e-27
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 43  GKEGLIPSNYIEMKN----HDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGD--FS 95
           G  G   S + + +       WY G   R  AE  L  +  +G+FLIR S        ++
Sbjct: 4   GSSGPFNSTFADQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYT 63

Query: 96  LSVKCSDGVQHFKVLRDSSGKFFLWVVK------FNSLNELVEYHRTAS 138
           L    +  V +  V    + K +    K      F S+ E+V  H+   
Sbjct: 64  LVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNP 112

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus} Length = 141

 Score =  104 bits (260), Expect = 3e-27
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 222 GKEGLIPSNYIEMKN----HDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGD--FS 274
           G  G   S + + +       WY G   R  AE  L  +  +G+FLIR S        ++
Sbjct: 4   GSSGPFNSTFADQEAELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYT 63

Query: 275 LSVKCSDGVQHFKVLRDSSGKFFLWVVK------FNSLNELVEYHRTAS 317
           L    +  V +  V    + K +    K      F S+ E+V  H+   
Sbjct: 64  LVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNP 112

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score =  108 bits (271), Expect = 8e-27
 Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSES-SPGDFSLSVKCSDGVQHFK 287
           +N + ++N +WY+G I+R +    L +  +G FL+R + +   GD++L+++     +  K
Sbjct: 2   NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61

Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLRDMVPEECLVQALYDFTP 344
           +        F   + F+S+ EL+ ++R  S+++      VKL   V +    Q + +   
Sbjct: 62  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKEDNI 121

Query: 345 QEPGELEFRRDLKIKRRKS 363
           +  G+ +        + KS
Sbjct: 122 EAVGK-KLHEYNTQFQEKS 139

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score =  107 bits (269), Expect = 1e-26
 Identities = 23/96 (23%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSES-SPGDFSLSVKCSDGVQHFK 108
           +N + ++N +WY+G I+R +    L +  +G FL+R + +   GD++L+++     +  K
Sbjct: 2   NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61

Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD 144
           +        F   + F+S+ EL+ ++R  S+++   
Sbjct: 62  IFHRDGKYGFSDPLTFSSVVELINHYRNESLAQYNP 97

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 91.8 bits (227), Expect = 8e-21
 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNM----EDDMNWYRAELDGKEGLIPSNYIEMK 56
            E   + +       +L   + Q L  L      +  +N +    + ++        E  
Sbjct: 236 REIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLGNENTEDQYSLVEDDEDL 295

Query: 57  NH----DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
            H     W  G   R  AE LL  K +G FL+R S S  G ++ SV     V+H  + + 
Sbjct: 296 PHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKT 354

Query: 113 SSGKFFLW-VVKFNSLNEL 130
           ++G  F      ++SL EL
Sbjct: 355 ATGYGFAEPYNLYSSLKEL 373

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A Length = 373

 Score = 91.0 bits (225), Expect = 1e-20
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK 287
             +        W  G   R  AE LL  K +G FL+R S S  G ++ SV     V+H  
Sbjct: 292 DEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCV 350

Query: 288 VLRDSSGKFFLW-VVKFNSLNEL 309
           + + ++G  F      ++SL EL
Sbjct: 351 INKTATGYGFAEPYNLYSSLKEL 373

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 98.5 bits (246), Expect = 4e-26
 Identities = 40/62 (64%), Positives = 50/62 (80%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
          MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK H  
Sbjct: 10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPE 69

Query: 61 YY 62
          + 
Sbjct: 70 FI 71

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 89.3 bits (222), Expect = 1e-22
 Identities = 33/90 (36%), Positives = 40/90 (44%), Gaps = 25/90 (27%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
                  A YDF      EL F+RGD++ V                         LN E 
Sbjct: 7   VGSMEAIAKYDFKATADDELSFKRGDILKV-------------------------LNEEC 41

Query: 212 DMNWYRAELDGKEGLIPSNYIEMKNHDWYY 241
           D NWY+AEL+GK+G IP NYIEMK H  + 
Sbjct: 42  DQNWYKAELNGKDGFIPKNYIEMKPHPEFI 71

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 96.3 bits (240), Expect = 1e-24
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 11/91 (12%)

Query: 55  MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHF 107
           ++ ++WY   I+R  AE+LL +   EGAF++R S  +PG +++SV           ++H+
Sbjct: 6   LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 64

Query: 108 KV--LRDSSGKFFLWV-VKFNSLNELVEYHR 135
            +    DS  ++++     F+S+  L++YH+
Sbjct: 65  HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQ 95

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B Length = 118

 Score = 96.3 bits (240), Expect = 1e-24
 Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 11/91 (12%)

Query: 234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDG------VQHF 286
           ++ ++WY   I+R  AE+LL +   EGAF++R S  +PG +++SV           ++H+
Sbjct: 6   LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 64

Query: 287 KV--LRDSSGKFFLWV-VKFNSLNELVEYHR 314
            +    DS  ++++     F+S+  L++YH+
Sbjct: 65  HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQ 95

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 92.1 bits (229), Expect = 1e-23
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY---ILN 208
                 +A++D       EL F+ GDVI V D S++ WW G+I   +G FPA++    +N
Sbjct: 8   DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 67

Query: 209 MEDDMNWYRAELDG 222
            ED++        G
Sbjct: 68  QEDEVEEGSGPSSG 81

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 68.2 bits (167), Expect = 7e-15
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
          + A A  D    A  EL+F+   V+K+L+  +  +W+  ++D +EG  P++++ +  + 
Sbjct: 11 VSAEAVWDHVTMANRELAFKAGDVIKVLDASNK-DWWWGQIDDEEGWFPASFVRLWVNQ 68

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
                 +A++D       EL F+  
Sbjct: 8   DSIVSAEAVWDHVTMANRELAFKAG 32

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 91.6 bits (228), Expect = 2e-23
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 127 LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSD 186
           +N  V +H    + R    +           +AL+DFT     EL F+ GDVI +  R +
Sbjct: 1   MNHKVHHHHHHHMDRMAAPR----------AEALFDFTGNSKLELNFKAGDVIFLLSRIN 50

Query: 187 QHWWHGEIGARKGLFPATYI 206
           + W  G +    G+FP +++
Sbjct: 51  KDWLEGTVRGATGIFPLSFV 70

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 68.5 bits (168), Expect = 6e-15
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A A  DF   ++ EL+F+   V+ +L+  +  +W    + G  G+ P +++++
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINK-DWLEGTVRGATGIFPLSFVKI 72

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 10/50 (20%)

Query: 306 LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
           +N  V +H    + R    +           +AL+DFT     EL F+  
Sbjct: 1   MNHKVHHHHHHHMDRMAAPR----------AEALFDFTGNSKLELNFKAG 40

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 90.7 bits (226), Expect = 3e-23
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           E   VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++  R+G+FP+ Y+
Sbjct: 1   ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 66.4 bits (163), Expect = 2e-14
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A  DFN     EL+F++  V+ ++N +D  NW+  +L+ + G+ PSNY+ 
Sbjct: 5  VQALFDFNPQESGELAFKRGDVITLINKDDP-NWWEGQLNNRRGIFPSNYVC 55

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 15/24 (62%), Positives = 17/24 (70%)

Query: 332 EECLVQALYDFTPQEPGELEFRRD 355
           E   VQAL+DF PQE GEL F+R 
Sbjct: 1   ETKFVQALFDFNPQESGELAFKRG 24

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 91.2 bits (227), Expect = 3e-23
 Identities = 23/73 (31%), Positives = 42/73 (57%)

Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           M   + LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  +
Sbjct: 1   MGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 60

Query: 210 EDDMNWYRAELDG 222
           +   +  R  L G
Sbjct: 61  DPAQSASRENLGG 73

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 12/52 (23%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           +A +D+   +  E++ +K  +L +LN  +  +W++ E++ ++G +P+ Y++
Sbjct: 8  VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVK 58

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 329 MVPEECLVQALYDFTPQEPGELEFRR 354
           M   + LV ALYD+  + P E+  ++
Sbjct: 1   MGTGKELVLALYDYQEKSPREVTMKK 26

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 93.0 bits (231), Expect = 3e-23
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 21/110 (19%)

Query: 48  IPSNYIEMKN---HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKC---- 100
             S  +   +     WY   ++R  A  LL +K  GAFLIR S S  G + L++K     
Sbjct: 7   HSSGLVPRGSDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPP 66

Query: 101 -----------SDGVQHFKVLRDSSGKFFLWV---VKFNSLNELVEYHRT 136
                         V+HF +     G           F SL+ LV  H  
Sbjct: 67  PSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSI 116

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A Length = 131

 Score = 93.0 bits (231), Expect = 3e-23
 Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 21/110 (19%)

Query: 227 IPSNYIEMKN---HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKC---- 279
             S  +   +     WY   ++R  A  LL +K  GAFLIR S S  G + L++K     
Sbjct: 7   HSSGLVPRGSDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPP 66

Query: 280 -----------SDGVQHFKVLRDSSGKFFLWV---VKFNSLNELVEYHRT 315
                         V+HF +     G           F SL+ LV  H  
Sbjct: 67  PSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSI 116

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 90.9 bits (226), Expect = 4e-23
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
                  A + +T +   EL FRRGDV+ + +R+   WW GE    +GL P  YI
Sbjct: 8   EGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN--- 57
          +EA+A   +      ELSFR+  VL++       +W+R E +G  GLIP  YI +     
Sbjct: 11 VEAVACFAYTGRTAQELSFRRGDVLRLHERASS-DWWRGEHNGMRGLIPHKYITLPAGTE 69

Query: 58 -HDWYYG 63
                G
Sbjct: 70 KQVVGAG 76

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
                  A + +T +   EL FRR 
Sbjct: 8   EGVVEAVACFAYTGRTAQELSFRRG 32

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 89.9 bits (224), Expect = 5e-23
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALY F PQ+ G+L  + GD + + ++    W+ G    R G+FPA Y+
Sbjct: 5   VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 66.8 bits (164), Expect = 1e-14
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A + F+   + +L  +    +++L       WY+   +G+ G+ P+NY++
Sbjct: 5  VEALYQFDPQQDGDLGLKPGDKVQLLEKLSP-EWYKGSCNGRTGIFPANYVK 55

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 336 VQALYDFTPQEPGELEFRRDLKIK 359
           V+ALY F PQ+ G+L  +   K++
Sbjct: 5   VEALYQFDPQQDGDLGLKPGDKVQ 28

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 89.9 bits (224), Expect = 5e-23
 Identities = 29/53 (54%), Positives = 34/53 (64%)

Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
              VQAL+DF PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+
Sbjct: 2   PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 67.2 bits (165), Expect = 9e-15
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A  DF+   + EL FR+   + +++  D  NW++    G+ G+ P NY+ 
Sbjct: 5  VQALFDFDPQEDGELGFRRGDFIHVMDNSDP-NWWKGACHGQTGMFPRNYVT 55

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 333 ECLVQALYDFTPQEPGELEFRRD 355
              VQAL+DF PQE GEL FRR 
Sbjct: 2   PTYVQALFDFDPQEDGELGFRRG 24

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 90.2 bits (224), Expect = 9e-23
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 28/104 (26%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
           E+ +V ALYD+    P +L F++GD + V + S   WW                      
Sbjct: 2   EDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESG-EWW---------------------- 38

Query: 213 MNWYRAELDGKEGLIPSNYIEMKNH---DWYYGRITRADAERLL 253
               R+    KEG IPSNY+   +        GR  R  AER+ 
Sbjct: 39  --KARSLATRKEGYIPSNYVARVDSGGGTSGGGRHRRRQAERMS 80

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 81.7 bits (202), Expect = 1e-19
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKNH--- 58
          +A +D+ + + D+LSF+K   + +L    +  W++A      KEG IPSNY+   +    
Sbjct: 7  VALYDYVSWSPDDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYVARVDSGGG 64

Query: 59 DWYYGRITRADAERLL 74
              GR  R  AER+ 
Sbjct: 65 TSGGGRHRRRQAERMS 80

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 332 EECLVQALYDFTPQEPGELEFRR 354
           E+ +V ALYD+    P +L F++
Sbjct: 2   EDIIVVALYDYVSWSPDDLSFQK 24

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 49  PSNYIEMKNH-DWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCS---DG 103
             +Y+++ N     +  ++R +A  +L  N   G  ++R   S   ++S++++       
Sbjct: 5   AMDYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPG-SDSRNYSITIRQEIDIPR 63

Query: 104 VQHFKVLRDSSGKFFLWV--VKFNSLNELVEYHRTAS 138
           ++H+KV+             V   +L  +++Y    +
Sbjct: 64  IKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYFVKET 100

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens} Length = 125

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 228 PSNYIEMKNH-DWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCS---DG 282
             +Y+++ N     +  ++R +A  +L  N   G  ++R   S   ++S++++       
Sbjct: 5   AMDYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPG-SDSRNYSITIRQEIDIPR 63

Query: 283 VQHFKVLRDSSGKFFLWV--VKFNSLNELVEYHRTAS 317
           ++H+KV+             V   +L  +++Y    +
Sbjct: 64  IKHYKVMSVGQNYTIELEKPVTLPNLFSVIDYFVKET 100

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 89.6 bits (223), Expect = 1e-22
 Identities = 23/50 (46%), Positives = 36/50 (72%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALYDF P+  GEL FR GD+IT+T++ D++W+ G +  + G FP +Y+
Sbjct: 16  CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYV 65

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 68.4 bits (168), Expect = 4e-15
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
            A +DF    + EL FR+  ++ + N  D+ NWY   L G+ G  P +Y+++
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDE-NWYEGMLHGQSGFFPLSYVQV 67

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
            +ALYDF P+  GEL FR    I
Sbjct: 16  CKALYDFEPENDGELGFREGDLI 38

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 89.1 bits (222), Expect = 1e-22
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +AL+DFT     EL F+ GDVI +  R ++ W  G +    G+FP +++
Sbjct: 7   AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 71.0 bits (175), Expect = 5e-16
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          M A A  DF   ++ EL+F+   V+ +L+  +  +W    + G  G+ P +++++
Sbjct: 5  MRAEALFDFTGNSKLELNFKAGDVIFLLSRINK-DWLEGTVRGATGIFPLSFVKI 58

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            +AL+DFT     EL F+  
Sbjct: 7   AEALFDFTGNSKLELNFKAG 26

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 88.8 bits (221), Expect = 1e-22
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           + +   V+AL+ +   +P +LEF+ GD+I V  + ++ W  GE   + G+FP  ++
Sbjct: 2   LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 67.6 bits (166), Expect = 8e-15
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A   + AT  ++L F++  ++ +L+  ++  W   E  GK G+ P  ++E
Sbjct: 8  VEALFSYEATQPEDLEFQEGDIILVLSKVNE-EWLEGESKGKVGIFPKVFVE 58

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 330 VPEECLVQALYDFTPQEPGELEFRR 354
           + +   V+AL+ +   +P +LEF+ 
Sbjct: 2   LKKGSQVEALFSYEATQPEDLEFQE 26

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 89.3 bits (222), Expect = 1e-22
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
            E     A +D+  +   EL F++G  + +  R+   WW G      GL P  YI+  + 
Sbjct: 7   GEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDT 66

Query: 212 D 212
            
Sbjct: 67  S 67

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 77.4 bits (191), Expect = 3e-18
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
          +EAIAK D+      ELSF+K   L +     D +W+    +G +GLIP  YI +++  
Sbjct: 10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASD-DWWEGRHNGIDGLIPHQYIVVQDTS 67

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKI 358
            E     A +D+  +   EL F++   +
Sbjct: 7   GEPIEAIAKFDYVGRTARELSFKKGASL 34

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 88.9 bits (221), Expect = 2e-22
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMK 56
           E IAK++F+ TAE +L F K  VL I+ +  D NWY+A+   G+EG+IP+NY++ +
Sbjct: 12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 26/86 (30%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
            P      A Y+F      +L F +GDV+T                         I+ + 
Sbjct: 8   WPSGTECIAKYNFHGTAEQDLPFCKGDVLT-------------------------IVAVT 42

Query: 211 DDMNWYRAEL-DGKEGLIPSNYIEMK 235
            D NWY+A+   G+EG+IP+NY++ +
Sbjct: 43  KDPNWYKAKNKVGREGIIPANYVQKR 68

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 330 VPEECLVQALYDFTPQEPGELEFRR 354
            P      A Y+F      +L F +
Sbjct: 8   WPSGTECIAKYNFHGTAEQDLPFCK 32

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 88.5 bits (220), Expect = 2e-22
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             ALY F PQE  +LE R GD+IT+ + S++ WW G+I  R G FPA ++
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 67.7 bits (166), Expect = 8e-15
 Identities = 9/54 (16%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
            +A + F     ++L  R   ++ +L   ++ +W++ ++  + G  P+N+++ 
Sbjct: 9  TYVALYKFVPQENEDLEMRPGDIITLLEDSNE-DWWKGKIQDRIGFFPANFVQR 61

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
             ALY F PQE  +LE R    I
Sbjct: 10  YVALYKFVPQENEDLEMRPGDII 32

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 89.0 bits (221), Expect = 3e-22
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA 196
           +S S   +++L + V  +   +ALYDF   E  EL F+ G++I V D SD +WW GE   
Sbjct: 2   SSGSSGSEIQLNNKVARKV--RALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHR 59

Query: 197 RKGLFPATYI 206
             GLFP+ ++
Sbjct: 60  GIGLFPSNFV 69

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.4 bits (170), Expect = 4e-15
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
            A +DF A  ++EL+F+  +++ +L+  D  NW++ E     GL PSN++  
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDA-NWWKGENHRGIGLFPSNFVTT 71

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 316 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
           +S S   +++L + V  +   +ALYDF   E  EL F+  
Sbjct: 2   SSGSSGSEIQLNNKVARKV--RALYDFEAVEDNELTFKHG 39

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 88.5 bits (220), Expect = 3e-22
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALYDF P+  GEL F+ GD+IT+T++ D++W+ G +    G FP  Y+
Sbjct: 10  CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 68.8 bits (169), Expect = 3e-15
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
            A +DF    E EL F++  ++ + N  D+ NWY   L G  G  P NY+E+
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDE-NWYEGMLHGHSGFFPINYVEI 61

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            +ALYDF P+  GEL F+  
Sbjct: 10  CRALYDFEPENEGELGFKEG 29

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 88.0 bits (219), Expect = 3e-22
 Identities = 19/50 (38%), Positives = 34/50 (68%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +AL ++  + PG+L+F +GDVI +  + D++W+ GEI    G+FPA+ +
Sbjct: 10  AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 68.4 bits (168), Expect = 5e-15
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A A  ++      +L F K  V+ +    D+ NWY+ E++G  G+ P++ +E+
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDE-NWYQGEINGVSGIFPASSVEV 61

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            +AL ++  + PG+L+F + 
Sbjct: 10  AKALCNYRGKNPGDLKFNKG 29

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 87.6 bits (218), Expect = 3e-22
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            + +ALY F P+ P EL F  GD+I +TD SD +WW G    R GL P+ Y+
Sbjct: 4   KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 69.1 bits (170), Expect = 2e-15
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A + F     DEL F +  ++ I +M D  NW++    G+ GLIPSNY+ 
Sbjct: 6  FRALYTFEPRTPDELYFEEGDIIYITDMSDT-NWWKGTSKGRTGLIPSNYVA 56

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 334 CLVQALYDFTPQEPGELEFRRDLKI 358
            + +ALY F P+ P EL F     I
Sbjct: 4   KVFRALYTFEPRTPDELYFEEGDII 28

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 88.1 bits (219), Expect = 4e-22
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +A +DF  Q   EL  ++GD++ +  + DQ+W+ GE   R G+FP TYI
Sbjct: 10  ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A AK DF A    EL  +K  ++ I    D  NWY  E  G+ G+ P  YIE+
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQ-NWYEGEHHGRVGIFPRTYIEL 61

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            +A +DF  Q   EL  ++ 
Sbjct: 10  ARAKFDFKAQTLKELPLQKG 29

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 87.3 bits (217), Expect = 6e-22
 Identities = 24/50 (48%), Positives = 31/50 (62%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALY F P+ P EL F  GD+I +TD SD +WW G    R GL P+ Y+
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 70.3 bits (173), Expect = 8e-16
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
            A + F     DEL F +  ++ I +M D  NW++    G+ GLIPSNY+  
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDT-NWWKGTSKGRTGLIPSNYVAE 61

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
            +ALY F P+ P EL F     I
Sbjct: 10  FRALYTFEPRTPDELYFEEGDII 32

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 95.0 bits (237), Expect = 6e-22
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 47  LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
           +IP     +    WY+G I RA+   LL   H G FL+R S+    ++ LSV      +H
Sbjct: 2   MIPEVQKPLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQ-GKQEYVLSVLWDGLPRH 58

Query: 107 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTAS 138
           F + +     + L    F S+  L+++  +  
Sbjct: 59  FII-QSLDNLYRLEGEGFPSIPLLIDHLLSTQ 89

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 95.0 bits (237), Expect = 6e-22
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
           +IP     +    WY+G I RA+   LL   H G FL+R S+    ++ LSV      +H
Sbjct: 2   MIPEVQKPLHEQLWYHGAIPRAEVAELL--VHSGDFLVRESQ-GKQEYVLSVLWDGLPRH 58

Query: 286 FKVLRDSSGKFFLWVVKFNSLNELVEYHRTAS 317
           F + +     + L    F S+  L+++  +  
Sbjct: 59  FII-QSLDNLYRLEGEGFPSIPLLIDHLLSTQ 89

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 86.9 bits (216), Expect = 6e-22
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             + LV  LYD+  + P EL  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 4   TGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 70.7 bits (174), Expect = 5e-16
 Identities = 13/55 (23%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
           +  +D+   +  EL+ +K  +L +LN  +  +W++ E++G++G +P+ Y++  +
Sbjct: 9  VLVLYDYQEKSPRELTVKKGDILTLLNSTNK-DWWKIEVNGRQGFVPAAYLKKLD 62

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
             + LV  LYD+  + P EL  ++   + 
Sbjct: 4   TGKELVLVLYDYQEKSPRELTVKKGDILT 32

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 96.1 bits (239), Expect = 7e-22
 Identities = 72/301 (23%), Positives = 119/301 (39%), Gaps = 108/301 (35%)

Query: 55  MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           MK+  W++  IT  +AE LL  +  +G+FL R S+S+PGD +LSV+ +  V H K+    
Sbjct: 1   MKSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTG 60

Query: 114 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEF 173
                    KF +L ELV+Y+                               +  G+L+ 
Sbjct: 61  DYYDLYGGEKFATLAELVQYYM------------------------------EHHGQLKE 90

Query: 174 RRGDVIT------VTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLI 227
           + GDVI         D + + W+HG +  +                              
Sbjct: 91  KNGDVIELKYPLNCADPTSERWFHGHLSGK------------------------------ 120

Query: 228 PSNYIEMKNHDWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSD----- 281
                               +AE+LL+ K + G+FL+R S+S PGDF LSV+  D     
Sbjct: 121 --------------------EAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGES 160

Query: 282 -----GVQHFKVLRDSSGKFFLWVV----KFNSLNELVEYHRTASV--SRSQDVKLRDMV 330
                 V H  + R    K   + V    +F+SL +LVE+++   +  +    ++L+  +
Sbjct: 161 NDGKSKVTHVMI-RCQELK---YDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPL 216

Query: 331 P 331
            
Sbjct: 217 N 217

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1 Length = 525

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 21/121 (17%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSD----- 102
           P N  +  +  W++G ++  +AE+LL+ K + G+FL+R S+S PGDF LSV+  D     
Sbjct: 101 PLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGES 160

Query: 103 -----GVQHFKVLRDSSGKFFLWVV----KFNSLNELVEYHRTASV--SRSQDVKLRDMV 151
                 V H  + R    K   + V    +F+SL +LVE+++   +  +    ++L+  +
Sbjct: 161 NDGKSKVTHVMI-RCQELK---YDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPL 216

Query: 152 P 152
            
Sbjct: 217 N 217

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 86.9 bits (216), Expect = 7e-22
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             A +D+  +   EL F++G  + +  R+ + WW G      GL P  YI
Sbjct: 9   AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 73.8 bits (182), Expect = 4e-17
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           AIAK D+   +  ELSF+K   L + +   + +W+    +G +GL+P  YI 
Sbjct: 8  FAIAKFDYVGRSARELSFKKGASLLLYHRASE-DWWEGRHNGIDGLVPHQYIV 59

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 87.3 bits (217), Expect = 7e-22
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            + LYDF P+  GEL F+ GD+IT+T++ D++W+ G I    G FP  Y+
Sbjct: 6   CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYV 55

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 4e-15
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
              +DF    + EL F++  ++ + N  D+ NWY   + G+ G  P NY+E+
Sbjct: 6  CRGLYDFEPENQGELGFKEGDIITLTNQIDE-NWYEGMIHGESGFFPINYVEV 57

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 36.4 bits (85), Expect = 9e-04
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            + LYDF P+  GEL F+  
Sbjct: 6   CRGLYDFEPENQGELGFKEG 25

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 86.9 bits (216), Expect = 8e-22
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +  +DF  Q P EL  ++GD++ +    D++W  GE   R G+FPA Y+
Sbjct: 4   ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 72.2 bits (178), Expect = 1e-16
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWY 61
          A  K DF A +  EL+ +K  ++ I    D  NW   E  G+ G+ P+NY+E+   + +
Sbjct: 4  ARLKFDFQAQSPKELTLQKGDIVYIHKEVDK-NWLEGEHHGRLGIFPANYVEVLPLEHH 61

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            +  +DF  Q P EL  ++ 
Sbjct: 4   ARLKFDFQAQSPKELTLQKG 23

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 86.9 bits (216), Expect = 8e-22
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALYDF   E  EL F+ G++ITV D SD +WW GE     GLFP+ ++
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
            A +DF A  ++EL+F+  +++ +L+  D  NW++ E     GL PSN++  
Sbjct: 8  VRALYDFEAVEDNELTFKHGELITVLDDSDA-NWWQGENHRGTGLFPSNFVTT 59

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
           V+ALYDF   E  EL F+  
Sbjct: 8   VRALYDFEAVEDNELTFKHG 27

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 87.5 bits (217), Expect = 9e-22
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--R 197
           S S        V E     A Y F      EL FR+G+ I +  + +++W+ G I    R
Sbjct: 3   SGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGR 62

Query: 198 KGLFPATYI 206
           +G+FPA+Y+
Sbjct: 63  QGIFPASYV 71

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM 55
          EA+A++ F    E ELSFRK + + ++   ++ NWY   +   G++G+ P++Y+++
Sbjct: 19 EAVAQYTFKGDLEVELSFRKGEHICLIRKVNE-NWYEGRITGTGRQGIFPASYVQV 73

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 13/40 (32%)

Query: 319 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKI 358
           S S        V E     A Y F      EL FR+   I
Sbjct: 3   SGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHI 42

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 86.4 bits (215), Expect = 1e-21
 Identities = 24/49 (48%), Positives = 30/49 (61%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
            +ALYDF   E  EL FR G+V+ V D S+  WW G +  + GLFPA Y
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANY 52

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 66.4 bits (163), Expect = 2e-14
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A A +DF A  EDEL FR  +V+++L+  +  +W+   L  K GL P+NY+ 
Sbjct: 4  ARALYDFEALEEDELGFRSGEVVEVLDSSNP-SWWTGRLHNKLGLFPANYVA 54

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            +ALYDF   E  EL FR  
Sbjct: 4   ARALYDFEALEEDELGFRSG 23

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 19/55 (34%), Positives = 35/55 (63%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             + LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 15  TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 69

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 76.3 bits (188), Expect = 9e-18
 Identities = 13/65 (20%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYY 62
           +A +D+   +  E++ +K  +L +LN  +  +W++ E++ ++G +P+ Y++     W +
Sbjct: 20 VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVKKLAAAWSH 78

Query: 63 GRITR 67
           +  +
Sbjct: 79 PQFEK 83

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
             + LV ALYD+  + P E+  ++   + 
Sbjct: 15  TGKELVLALYDYQEKSPREVTMKKGDILT 43

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 87.5 bits (217), Expect = 1e-21
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
              C V A+YD+      EL F +G +I V ++ D  WW GEI    GLFP+ Y+    D
Sbjct: 32  HPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD 91

Query: 212 D 212
            
Sbjct: 92  S 92

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 69.8 bits (171), Expect = 3e-15
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
           IA +D+ A  EDELSF K Q++ ++N +D  +W++ E++G  GL PSNY++M
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDP-DWWQGEINGVTGLFPSNYVKM 88

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
           + +   V ALY F  Q+PG+L F+ GD ITV  ++D H  WW G++  + G+FPA Y+
Sbjct: 14  LNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
          +E  A + F      +L+F+    + +++  D   +W+  +L G+ G+ P+NY+ M
Sbjct: 18 IEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 330 VPEECLVQALYDFTPQEPGELEFRRDLKI 358
           + +   V ALY F  Q+PG+L F+   +I
Sbjct: 14  LNQPIEVTALYSFEGQQPGDLNFQAGDRI 42

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 86.1 bits (214), Expect = 1e-21
 Identities = 21/55 (38%), Positives = 29/55 (52%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           P   +V+A ++F      EL F +GDVI VT   +  WW G    R G FP+ Y+
Sbjct: 2   PLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 68.4 bits (168), Expect = 4e-15
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            AK +F  T EDELSF K  V+ +  +E+   W+    +G+ G  PSNY+ 
Sbjct: 7  VRAKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTHNGRTGWFPSNYVR 57

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
           P   +V+A ++F      EL F + 
Sbjct: 2   PLGSVVRAKFNFQQTNEDELSFSKG 26

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           P      A ++F      E+ FR+G+ IT+  + D++W+ G I   +R+G+FP TY+
Sbjct: 4   PFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 68.4 bits (168), Expect = 5e-15
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
          EAIAK +FN   + E+SFRK + + +L   D+ NWY   + G  ++G+ P  Y+++
Sbjct: 8  EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 62

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKI 358
           P      A ++F      E+ FR+  +I
Sbjct: 4   PFTGEAIAKFNFNGDTQVEMSFRKGERI 31

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
            +AL DF   +  EL FR+ D+IT+  + D+H W GE+   +G FPA ++  +++ 
Sbjct: 10  AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER 65

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 67.7 bits (166), Expect = 9e-15
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A A  DF    +DEL FRK+ ++ I++ +D+ + +  EL+G  G  P+ ++E+
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDE-HCWVGELNGLRGWFPAKFVEV 61

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             + +V+A ++F      EL F +GDVI VT   +  WW G    R G FP+ Y+
Sbjct: 4   NSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            AK +F  T EDELSF K  V+ +  +E+   W+    +G+ G  PSNY+ 
Sbjct: 9  VRAKFNFQQTNEDELSFSKGDVIHVTRVEEG-GWWEGTHNGRTGWFPSNYVR 59

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
             + +V+A ++F      EL F + 
Sbjct: 4   NSQLVVRAKFNFQQTNEDELSFSKG 28

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            E   V+A+YDF   E  EL F+ G++ITV D SD +WW GE     GLFP+ ++
Sbjct: 15  HEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
            A +DF A  ++EL+F+  +++ +L+  D  NW++ E     GL PSN++  
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDP-NWWKGETHQGIGLFPSNFVTA 71

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
            E   V+A+YDF   E  EL F+  
Sbjct: 15  HEARKVRAIYDFEAAEDNELTFKAG 39

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 85.5 bits (212), Expect = 4e-21
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK 56
           + I K +       EL+FRK  V+ IL   ++ +WYR +    G+EGL+ +  +  +
Sbjct: 18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER 75

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 76.7 bits (189), Expect = 8e-18
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 27/86 (31%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
                     + T  +PGEL FR+GDV+T                         IL   +
Sbjct: 15  APGTQCITKCEHTRPKPGELAFRKGDVVT-------------------------ILEACE 49

Query: 212 DMNWYRAE--LDGKEGLIPSNYIEMK 235
           + +WYR +    G+EGL+ +  +  +
Sbjct: 50  NKSWYRVKHHTSGQEGLLAAGALRER 75

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 84.5 bits (210), Expect = 6e-21
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
             ALY F  +E G+L FR+GDVIT+  +SD    WW G +  R+G+FPA Y+
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
          +A+A + F      +L FRK  V+ IL   D   +W+   ++G+EG+ P+NY+E+
Sbjct: 5  KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 336 VQALYDFTPQEPGELEFRRDLKIK 359
             ALY F  +E G+L FR+   I 
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVIT 29

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 84.5 bits (210), Expect = 6e-21
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            + L+ F P+   EL+   G+++ V  + + +W       +KGL P  Y+
Sbjct: 10  HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYL 59

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 64.9 bits (159), Expect = 7e-14
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
                F    ++EL      ++ +L   +D NW     +G++GL+P NY+E
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGND-NWATVMFNGQKGLVPCNYLE 60

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 336 VQALYDFTPQEPGELEFRRD 355
            + L+ F P+   EL+    
Sbjct: 10  HRVLFGFVPETKEELQVMPG 29

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 84.2 bits (209), Expect = 8e-21
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
                 +ALY +  Q+  EL F   D+I +       WW G +  ++GLFP  Y+
Sbjct: 3   LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 67.6 bits (166), Expect = 7e-15
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           +  A + ++A   DELSF  + ++ I+  +    W+   L GK+GL P+NY+ 
Sbjct: 6  PQCKALYAYDAQDTDELSFNANDIIDIIKEDPS-GWWTGRLRGKQGLFPNNYVT 58

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 84.3 bits (209), Expect = 1e-20
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
                V A+YD+T  +  EL F+ G +I V  ++D  W+ G +    GLFP  Y+
Sbjct: 15  SYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 67.8 bits (166), Expect = 9e-15
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
           +A +D+    EDELSF++  ++ ++   DD  WY   ++G  GL P NY+E 
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDD-GWYEGVMNGVTGLFPGNYVES 71

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
                V A+YD+T  +  EL F+  
Sbjct: 15  SYLEKVVAIYDYTKDKEDELSFQEG 39

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 83.9 bits (208), Expect = 1e-20
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALY F  ++  EL   +GD++ + ++ ++ WW G +  +KG FPA Y+
Sbjct: 10  CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A + F A  +DEL+  K  ++ I   +++  W+   L+GK+G  P+ Y+E
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVIIHEKKEE-GWWFGSLNGKKGHFPAAYVE 60

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             + +V+A ++F      EL   +GD+I VT   +  WW G +  R G FP+ Y+
Sbjct: 8   SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 68.5 bits (168), Expect = 6e-15
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
            A+ +F  T EDELS  K  ++ +  +E+   W+   L+G+ G  PSNY+  
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEG-GWWEGTLNGRTGWFPSNYVRE 64

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 83.4 bits (207), Expect = 2e-20
 Identities = 17/62 (27%), Positives = 36/62 (58%)

Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           +  ++   + L+++ PQ   ELE + GD+I + +  ++ WW G +  + GLFP+ ++  +
Sbjct: 3   LGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62

Query: 210 ED 211
           E 
Sbjct: 63  EV 64

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
               ++    EDEL  +   ++ I    ++  W+   L+ K GL PSN+++ 
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEE-GWWSGTLNNKLGLFPSNFVKE 61

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 329 MVPEECLVQALYDFTPQEPGELEFRRD 355
           +  ++   + L+++ PQ   ELE +  
Sbjct: 3   LGSKKRQCKVLFEYIPQNEDELELKVG 29

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 83.0 bits (206), Expect = 2e-20
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALYD+  Q   EL F+ GD I V  +    WW GE+  ++G  PA Y+
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 69.1 bits (170), Expect = 2e-15
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          ++  A +D++A   DEL+F++   + +   +    W+  EL+GK G +P+NY++
Sbjct: 4  IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPA-GWWEGELNGKRGWVPANYVQ 56

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 83.0 bits (206), Expect = 2e-20
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 25/89 (28%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
               V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E                   
Sbjct: 2   SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED------------------ 43

Query: 213 MNWYRAELDGKEGLIPSNYIEMKNHDWYY 241
                   +GK G+IP  Y+E  +H  ++
Sbjct: 44  -------SEGKRGMIPVPYVEKYHHHHHH 65

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 71.5 bits (176), Expect = 3e-16
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHDWY 61
            A  DFN   E++L F+K  +L+I +  ++  W+ AE  +GK G+IP  Y+E  +H  +
Sbjct: 6  VRALFDFNGNDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEGKRGMIPVPYVEKYHHHHH 64

Query: 62 Y 62
          +
Sbjct: 65 H 65

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 332 EECLVQALYDFTPQEPGELEFRRD 355
               V+AL+DF   +  +L F++ 
Sbjct: 2   SAEYVRALFDFNGNDEEDLPFKKG 25

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 83.1 bits (206), Expect = 2e-20
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
             A ++F      E+ FR+G+ IT+  + D++W+ G I   +R+G+FP TY+
Sbjct: 10  AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEM 55
          EAIAK +FN   + E+SFRK + + +L   D+ NWY   + G  ++G+ P  Y+++
Sbjct: 9  EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE-NWYEGRIPGTSRQGIFPITYVDV 63

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 83.2 bits (206), Expect = 3e-20
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATY 205
            +   V+ +YD       EL F  G+VI VT   DQ WW G I     RKG+FP ++
Sbjct: 8   NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSF 64

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG---KEGLIPSNYIEM 55
              +D  A  +DEL+F + +V+ +   ED   W+   ++G   ++G+ P +++ +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQ-EWWIGHIEGQPERKGVFPVSFVHI 67

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 82.8 bits (205), Expect = 3e-20
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            E    QAL  +T ++   L F + D+ITV ++  ++WW GE+   +G FP +Y+
Sbjct: 8   VENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYV 61

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 65.0 bits (159), Expect = 9e-14
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          ++A A   + A  ++ L+F K  ++ +L  ++  NW+  E+ G  G  P +Y+++
Sbjct: 11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQQE--NWWFGEVHGGRGWFPKSYVKI 63

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
            E    QAL  +T ++   L F + 
Sbjct: 8   VENLKAQALCSWTAKKDNHLNFSKH 32

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 82.8 bits (205), Expect = 3e-20
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGARKGLFPATYI 206
            +AL D+   +   L F+R D+IT+T +  ++ W+ G++  ++G FP  ++
Sbjct: 13  ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 70.9 bits (174), Expect = 8e-16
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A A  D+N +    L F+++ ++ I   + +  W+  +L+GKEG  P +++E
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 82.3 bits (204), Expect = 4e-20
 Identities = 17/58 (29%), Positives = 34/58 (58%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
              + L+++ PQ   ELE + GD+I + +  ++ WW G +  + GLFP+ ++  +E +
Sbjct: 2   RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE 59

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
               ++    EDEL  +   ++ I    ++  W+   L+ K GL PSN+++
Sbjct: 4  CKVLFEYIPQNEDELELKVGDIIDINEEVEE-GWWSGTLNNKLGLFPSNFVK 54

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 82.4 bits (204), Expect = 5e-20
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 25/102 (24%)

Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA 196
           +S S  +D +     PEE +V ALYD+   +P EL  RR +   + D S+ HWW  +   
Sbjct: 2   SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD-- 59

Query: 197 RKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 238
                                   +G EG +PS+Y+  K+ +
Sbjct: 60  -----------------------RNGHEGYVPSSYLVEKSPN 78

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNHD 59
           IA +D+      EL+ R+++   +L+  +  +W+R +  +G EG +PS+Y+  K+ +
Sbjct: 22 VIALYDYQTNDPQELALRRNEEYCLLDSSEI-HWWRVQDRNGHEGYVPSSYLVEKSPN 78

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 316 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
           +S S  +D +     PEE +V ALYD+   +P EL  RR+
Sbjct: 2   SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRN 41

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 81.9 bits (203), Expect = 5e-20
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            Q  + + PQ   ELE + GD+I V    ++ WW G +  + G+FP+ +I
Sbjct: 10  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 65.3 bits (160), Expect = 6e-14
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
                +    +DEL  +   +++++   ++  W+   L+GK G+ PSN+I+ 
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEE-GWWEGVLNGKTGMFPSNFIKE 61

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 81.9 bits (203), Expect = 6e-20
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 25/85 (29%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
            E   V ALYD+ P    +L+ R+GD   + + S+  WW                     
Sbjct: 6   SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK---------------- 49

Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
                    +G+EG IPSNY+    
Sbjct: 50  ---------NGQEGYIPSNYVTEAE 65

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 68.4 bits (168), Expect = 4e-15
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMKN 57
           +A +D+     ++L  RK     IL   +   W+RA   +G+EG IPSNY+    
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNL-PWWRARDKNGQEGYIPSNYVTEAE 65

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
            E   V ALYD+ P    +L+ R+ 
Sbjct: 6   SELKKVVALYDYMPMNANDLQLRKG 30

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 85.8 bits (212), Expect = 6e-20
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 46/127 (36%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI---------- 206
            +A+ D+      E+    GDV+ V ++S+  WW  ++ A++G  PA+++          
Sbjct: 14  YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETE 73

Query: 207 -----------------------------------LNMEDDMNWYRAELDGKEGLIPSNY 231
                                              ++   D  W+    D   G  PS Y
Sbjct: 74  DPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLD-GWWVIRKDDVTGYFPSMY 132

Query: 232 IEMKNHD 238
           ++    D
Sbjct: 133 LQKSGQD 139

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 74.3 bits (182), Expect = 7e-16
 Identities = 13/74 (17%), Positives = 25/74 (33%)

Query: 139 VSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK 198
           +    + +  +         A+  +T  E  E+    G+ + V  +    WW        
Sbjct: 66  LDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT 125

Query: 199 GLFPATYILNMEDD 212
           G FP+ Y+     D
Sbjct: 126 GYFPSMYLQKSGQD 139

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 63.5 bits (154), Expect = 5e-12
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDW 60
            A  D+  T+  E++     V++++   +   W+  ++  K G IP++++E  +   
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSES-GWWFCQMKAKRGWIPASFLEPLDSPD 70

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 59.6 bits (144), Expect = 8e-11
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2   EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
             +A   + A   DE+S  + + +++++   D  W+    D   G  PS Y++    D
Sbjct: 83  PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLD-GWWVIRKDDVTGYFPSMYLQKSGQD 139

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 81.5 bits (202), Expect = 7e-20
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
                  ALY ++  EPG+L F  G+ I VT +    WW G IG R G+FP+ Y+   + 
Sbjct: 6   SGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDG-EWWTGSIGDRSGIFPSNYVKPKDS 64

Query: 212 D 212
            
Sbjct: 65  G 65

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
          E IA + +++    +L+F + + + +   + +  W+   +  + G+ PSNY++ K+  
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGEEILVTQKDGE--WWTGSIGDRSGIFPSNYVKPKDSG 65

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
                  ALY ++  EPG+L F    +I 
Sbjct: 6   SGGEEYIALYPYSSVEPGDLTFTEGEEIL 34

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 81.5 bits (202), Expect = 8e-20
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             A+ D+   +  +L F RG+ I +  ++   WW GE     G  PA ++
Sbjct: 10  FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 72.7 bits (179), Expect = 1e-16
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH 58
          E +A  D+ AT E +LSF + + + IL      +W+  E  G  G IP+N++   + 
Sbjct: 9  EFVAIADYAATDETQLSFLRGEKILILRQTTA-DWWWGERAGCCGYIPANHVGKHSG 64

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 81.0 bits (201), Expect = 9e-20
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 25/77 (32%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E                       
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED---------------------- 41

Query: 217 RAELDGKEGLIPSNYIE 233
               +GK G+IP  Y+E
Sbjct: 42  ---SEGKRGMIPVPYVE 55

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 69.5 bits (171), Expect = 1e-15
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE 54
            A  DFN   E++L F+K  +L+I +  ++  W+ AE  +GK G+IP  Y+E
Sbjct: 4  VRALFDFNGNDEEDLPFKKGDILRIRDKPEE-QWWNAEDSEGKRGMIPVPYVE 55

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 336 VQALYDFTPQEPGELEFRR 354
           V+AL+DF   +  +L F++
Sbjct: 4   VRALFDFNGNDEEDLPFKK 22

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 81.6 bits (202), Expect = 1e-19
 Identities = 20/55 (36%), Positives = 25/55 (45%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
                  ALYD+      E+ F   D+IT  +  D  WW G    R GLFPA Y+
Sbjct: 15  DLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 68.2 bits (167), Expect = 7e-15
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          + A+A +D+ A  +DE+SF    ++  + M DD  W+R    G+ GL P+NY+E+
Sbjct: 18 ITAVALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVEL 71

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 81.1 bits (201), Expect = 1e-19
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
          +A +DF A+ ++ LS  K + L++L    +  W  A+    +G +PS YI   N
Sbjct: 9  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 74.2 bits (183), Expect = 4e-17
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 25/87 (28%)

Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           M  +  L  ALYDF       L   +G+ + V                         L  
Sbjct: 1   MENDPNLFVALYDFVASGDNTLSITKGEKLRV-------------------------LGY 35

Query: 210 EDDMNWYRAELDGKEGLIPSNYIEMKN 236
             +  W  A+    +G +PS YI   N
Sbjct: 36  NHNGEWCEAQTKNGQGWVPSAYITPVN 62

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 81.1 bits (201), Expect = 1e-19
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALYD+T Q P EL+   GD++ V    +  WW  E   ++G  P +Y+
Sbjct: 11  YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           E  A +D+ A   DEL      +L+++   +D  W+  E +G+ G +P +Y+E
Sbjct: 9  QEYRALYDYTAQNPDELDLSAGDILEVILEGED-GWWTVERNGQRGFVPGSYLE 61

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 81.4 bits (201), Expect = 2e-19
 Identities = 13/66 (19%), Positives = 24/66 (36%)

Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKG 199
           S S       +          +++  +   EL   +G  + V ++    WW G    + G
Sbjct: 3   SGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVG 62

Query: 200 LFPATY 205
            FP+ Y
Sbjct: 63  WFPSNY 68

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.0 bits (169), Expect = 5e-15
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          M A  K ++ A  EDELS  K   + ++    D  W+R   +G+ G  PSNY+  
Sbjct: 18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSD-GWWRGSYNGQVGWFPSNYVTE 71

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATY 205
                V AL  +       L F RGD+I +      +  W  G  G R GLFPA  
Sbjct: 6   SGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADI 61

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIE 54
           IA   +       LSF +  ++K+L +   +  W      G+ GL P++ ++
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQH---WWHGEIGARKGLFPATYI 206
            L +ALYD   + P EL FR+GD++TV ++  Q    WW   +  R+G+ P   +
Sbjct: 4   VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRL 58

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMED--DMNWYRAELDGKEGLIPSNYIEM 55
          + A A +D  A + DELSFRK  ++ +L  +      W+   L G++G++P N +++
Sbjct: 4  VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 334 CLVQALYDFTPQEPGELEFRR 354
            L +ALYD   + P EL FR+
Sbjct: 4   VLAKALYDNVAESPDELSFRK 24

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPATY 205
              C V+ALYD+  Q   EL F  G +I + ++    D  +W GE   R G+FP+  
Sbjct: 6   SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVL 62

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 65.8 bits (161), Expect = 4e-14
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIEM 55
            A +D+    +DELSF +  +++ILN E  DD  ++  E +G+ G+ PS  +E 
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 65

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
              C V+ALYD+  Q   EL F   
Sbjct: 6   SGVCFVKALYDYEGQTDDELSFPEG 30

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 80.9 bits (200), Expect = 2e-19
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 25/85 (29%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
           PEE LV ALYD+   +P EL  R  +   + D S+ HWW  +                  
Sbjct: 18  PEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQ------------------ 59

Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
                  + +G EG  PS+Y+  K+
Sbjct: 60  -------DKNGHEGYAPSSYLVEKS 77

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 68.6 bits (168), Expect = 6e-15
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN 57
           IA +D+      EL+ R  +   +L+  +  +W+R +  +G EG  PS+Y+  K+
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLLDSSEI-HWWRVQDKNGHEGYAPSSYLVEKS 77

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
           PEE LV ALYD+   +P EL  R D
Sbjct: 18  PEETLVIALYDYQTNDPQELALRCD 42

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
                 Q  + + PQ   ELE + GD+I V    ++ WW G +  + G+FP+ +I  +  
Sbjct: 16  RRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 75

Query: 212 D 212
           +
Sbjct: 76  E 76

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 64.0 bits (156), Expect = 3e-13
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
                +    +DEL  +   +++++   ++  W+   L+GK G+ PSN+I+ 
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEE-GWWEGVLNGKTGMFPSNFIKE 72

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 80.4 bits (199), Expect = 2e-19
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPATYI 206
           L +ALYD  P    EL F RGD++T+ ++     + WW   +  R+GL PA  +
Sbjct: 9   LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 66.2 bits (162), Expect = 3e-14
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIEM 55
          A A +D      DEL+F +  +L IL     +   W++  L G++GL P+N +++
Sbjct: 10 ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 335 LVQALYDFTPQEPGELEFRRD 355
           L +ALYD  P    EL F R 
Sbjct: 9   LARALYDNCPDCSDELAFSRG 29

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 79.6 bits (197), Expect = 4e-19
 Identities = 20/50 (40%), Positives = 25/50 (50%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             ALYD+      E+ F   D+IT  +  D  WW G    R GLFPA Y+
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 68.8 bits (169), Expect = 3e-15
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
          + AIA +D+ A  +DE+SF    ++  + M DD  W+R    G+ GL P+NY+E++
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDD-GWWRGVCKGRYGLFPANYVELR 64

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 79.7 bits (197), Expect = 4e-19
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
             A Y+F  ++  EL  R GDV+ +  R   DQ WW GE   R G FP+TY+
Sbjct: 10  AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 67.7 bits (166), Expect = 8e-15
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIE 54
          A+A+++F A    ELS R+  V++I +    D  W++ E +G+ G  PS Y+E
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 79.3 bits (196), Expect = 5e-19
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 25/87 (28%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
           V     V ALYD+T     EL   RGD+I V  + ++ WW+G IG               
Sbjct: 3   VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG--------------- 47

Query: 211 DDMNWYRAELDGKEGLIPSNYIEMKNH 237
                      G+EG  P+N++  +  
Sbjct: 48  ----------KGQEGYFPANHVASETL 64

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMKNH 58
           +A +D+ A   DEL+  +  ++++   +++ +W+   +  G+EG  P+N++  +  
Sbjct: 9  VVALYDYTANRSDELTIHRGDIIRVFFKDNE-DWWYGSIGKGQEGYFPANHVASETL 64

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 330 VPEECLVQALYDFTPQEPGELEFRRDLKIK 359
           V     V ALYD+T     EL   R   I+
Sbjct: 3   VDTAPTVVALYDYTANRSDELTIHRGDIIR 32

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 79.7 bits (197), Expect = 5e-19
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 24/85 (28%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
               L  ALYD+      +L F +G+   + + S+  WW                     
Sbjct: 13  TGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEA------------------- 53

Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
                R+   G+ G IPSNY+   +
Sbjct: 54  -----RSLTTGETGYIPSNYVAPVD 73

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 66.2 bits (162), Expect = 3e-14
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN 57
          +A +D+ A  ED+LSF K +  +ILN  +  +W+ A     G+ G IPSNY+   +
Sbjct: 19 VALYDYEAITEDDLSFHKGEKFQILNSSEG-DWWEARSLTTGETGYIPSNYVAPVD 73

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
               L  ALYD+      +L F +  K +
Sbjct: 13  TGVTLFVALYDYEAITEDDLSFHKGEKFQ 41

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 79.3 bits (196), Expect = 5e-19
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYIL 207
           M        ALYDF P+   EL    GD++ ++ +  Q W   E   G++ GL P  ++ 
Sbjct: 1   MAIVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60

Query: 208 NMEDDM 213
            ++ ++
Sbjct: 61  YIQPEL 66

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 62.7 bits (153), Expect = 5e-13
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE-----M 55
          A+A +DF    ++EL   +  ++ I        W  AE     K GL+P  ++      +
Sbjct: 8  AVALYDFEPENDNELRLAEGDIVFISYKHGQ-GWLVAENESGSKTGLVPEEFVSYIQPEL 66

Query: 56 KNHDWYY 62
          ++H  ++
Sbjct: 67 EHHHHHH 73

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 329 MVPEECLVQALYDFTPQEPGELEFR 353
           M        ALYDF P+   EL   
Sbjct: 1   MAIVNQRAVALYDFEPENDNELRLA 25

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 78.7 bits (195), Expect = 6e-19
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
                 +D+  Q   EL    G++IT   + D  WW G+I  R+GLFP  ++
Sbjct: 2   VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 69.1 bits (170), Expect = 2e-15
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +EAI + D+ A  +DEL+    +++  +  ED   W+  +++G+ GL P N++ 
Sbjct: 2  VEAIVEFDYQAQHDDELTISVGEIITNIRKEDG-GWWEGQINGRRGLFPDNFVR 54

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 79.4 bits (196), Expect = 6e-19
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 17/86 (19%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
                  AL+D+  +   +L FR GD + V D S + WW      +KG            
Sbjct: 5   SSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKG------------ 52

Query: 212 DMNWYRAELDGKEGLIPSNYIEMKNH 237
                       +G IPSNY+   + 
Sbjct: 53  -----TGLGQQLQGYIPSNYVAEDSG 73

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---------DGKEGLIPSNYI 53
           +A  D+ A   ++LSFR    L++L+   +  W+ A              +G IPSNY+
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQVLDTSHE-GWWLARHLEKKGTGLGQQLQGYIPSNYV 68

Query: 54 EMKNH 58
             + 
Sbjct: 69 AEDSG 73

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 78.5 bits (194), Expect = 9e-19
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 18/78 (23%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+                     
Sbjct: 3   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVN---------------- 46

Query: 216 YRAELDGKEGLIPSNYIE 233
              +   ++G +P+ Y++
Sbjct: 47  --GKTYERQGFVPAAYVK 62

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 62.0 bits (151), Expect = 8e-13
 Identities = 12/60 (20%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--------DGKEGLIPSNYIE 54
           +A +D+   +  E++ +K  +L +LN  +  +W++ E+          ++G +P+ Y++
Sbjct: 4  VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVKITVNGKTYERQGFVPAAYVK 62

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 78.4 bits (194), Expect = 1e-18
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
           +  +   + L+ +T     EL FR G++I +  +   +  WW GE+  ++G+FP  + 
Sbjct: 3   MGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFA 60

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIE 54
                +  T EDEL+FR+ +++ +++ E  +  W++ EL+GKEG+ P N+  
Sbjct: 9  CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 34/102 (33%)

Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           MV    L +ALYD+  +   +L F +G+   + + S+  WW                   
Sbjct: 1   MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEA----------------- 43

Query: 210 EDDMNWYRAELDGKEGLIPSNYIE----------MKNHDWYY 241
                  R+   G+ G IPS Y+              H  ++
Sbjct: 44  -------RSLTTGETGYIPSIYLAPVDRLDYKDDDDKHHHHH 78

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE------- 54
           A +D+ A  ED+LSF K +  +ILN  +  +W+ A     G+ G IPS Y+        
Sbjct: 9  EALYDYEARTEDDLSFHKGEKFQILNSSEG-DWWEARSLTTGETGYIPSIYLAPVDRLDY 67

Query: 55 ---MKNHDWYY 62
                H  ++
Sbjct: 68 KDDDDKHHHHH 78

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 329 MVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
           MV    L +ALYD+  +   +L F +  K +
Sbjct: 1   MVQISTLFEALYDYEARTEDDLSFHKGEKFQ 31

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 78.5 bits (194), Expect = 1e-18
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
            + ++ +  Q   EL  + GD++T+ ++   D  WW GE+  R+G+FP  ++
Sbjct: 10  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 65.8 bits (161), Expect = 5e-14
 Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
                + A  +DEL+ ++  ++ ++N +  D+ W+  EL+G+ G+ P N++++
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 78.5 bits (194), Expect = 1e-18
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNM 209
             +   + ++ +  Q   EL  + GD++T+ ++   D  WW GE+  R+G+FP  ++  +
Sbjct: 7   KSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 66

Query: 210 EDDMN 214
             D  
Sbjct: 67  PPDFE 71

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEMKNHDW 60
                + A  +DEL+ ++  ++ ++N +  D+ W+  EL+G+ G+ P N++++   D+
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDF 70

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 78.0 bits (193), Expect = 1e-18
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
             A YD+   E  EL F   D I   +  D  WW GE+     KGLFP+ Y+
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 62.6 bits (153), Expect = 4e-13
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN 57
          A A++D++A  ++EL+F ++  +  +   DD +W+  EL  DG +GL PSNY+ + N
Sbjct: 3  ATAEYDYDAAEDNELTFVENDKIINIEFVDD-DWWLGELEKDGSKGLFPSNYVSLGN 58

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 158 QALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM--NW 215
             L  +      E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++       
Sbjct: 4   PPLPPY-SAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62

Query: 216 YRAELDGKE 224
             A  D +E
Sbjct: 63  VLALYDYQE 71

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          M A     ++A    E++ +K  +L +LN  +  +W++ E++ ++G +P+ Y++
Sbjct: 1  MGAPPLPPYSAGG-REVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVK 52

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 78.3 bits (193), Expect = 2e-18
 Identities = 18/69 (26%), Positives = 25/69 (36%)

Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA 196
            S   S  +      P              +   L    GD++ VT  +    W GE+  
Sbjct: 1   GSSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG 60

Query: 197 RKGLFPATY 205
           RKGLFP T+
Sbjct: 61  RKGLFPFTH 69

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 66.3 bits (162), Expect = 4e-14
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          +AI K    A  +  L+     ++K+  M  +   +  E++G++GL P  ++++
Sbjct: 20 KAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGEVNGRKGLFPFTHVKI 72

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
                   + ++  QE  EL  + G+V+ V ++++  WW       +G  PATY+
Sbjct: 6   SGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
          + +   ++      ELS +  +V+ ++   +   W+      ++G +P+ Y+E +N
Sbjct: 10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNES-GWWFVSTSEEQGWVPATYLEAQN 64

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
            + ++ +  Q   EL  + GD++T+ ++   D  WW GE+  R+G+FP  ++
Sbjct: 5   CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 65.4 bits (160), Expect = 5e-14
 Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
                + A  +DEL+ ++  ++ ++N +  D+ W+  EL+G+ G+ P N++++
Sbjct: 5  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 79.7 bits (196), Expect = 3e-18
 Identities = 25/91 (27%), Positives = 42/91 (46%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYY 62
          A A++DF A    ELS ++  ++KILN +    W+R E+ G+ G  PSNY+E    ++  
Sbjct: 8  AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLP 67

Query: 63 GRITRADAERLLSNKHEGAFLIRVSESSPGD 93
               + +         G  L   + +   D
Sbjct: 68 ETGGGSGSSMTYKLILNGKTLKGETTTEAVD 98

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 77.8 bits (191), Expect = 1e-17
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 25/118 (21%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
              +A YDF  ++  EL  + GD+I +                         LN +    
Sbjct: 6   GTAKARYDFCARDRSELSLKEGDIIKI-------------------------LNKKGQQG 40

Query: 215 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGD 272
           W+R E+ G+ G  PSNY+E    ++       + +         G  L   + +   D
Sbjct: 41  WWRGEIYGRIGWFPSNYVEEDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVD 98

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 25/101 (24%)

Query: 136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG 195
             +   S    +R+   E+ +V ALYD+      +L F++GD + V + S   WW     
Sbjct: 7   GPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKA--- 62

Query: 196 ARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 236
                                R+    KEG IPSNY+   +
Sbjct: 63  ---------------------RSLATRKEGYIPSNYVARVD 82

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 65.9 bits (161), Expect = 5e-14
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEMKN 57
           +A +D+ A   ++LSF+K   + +L    +  W++A      KEG IPSNY+   +
Sbjct: 28 VVALYDYEAIHHEDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYVARVD 82

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 315 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
             +   S    +R+   E+ +V ALYD+      +L F++  ++ 
Sbjct: 7   GPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMV 51

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 77.4 bits (191), Expect = 4e-18
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
                 + LYD+      EL     +VITV      D  W  GE G +KG  P TY+
Sbjct: 15  SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 65.1 bits (159), Expect = 9e-14
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM 55
          A   +D++A    ELS    +V+ + ++   D +W   E   ++G +P  Y+E+
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 77.0 bits (190), Expect = 4e-18
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 21/79 (26%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
           V A + +      +L F +   I VT   D  W+ GE     G                 
Sbjct: 10  VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNG----------------- 52

Query: 217 RAELDGKEGLIPSNYIEMK 235
               D  EG+ P +++ ++
Sbjct: 53  ----DVIEGIFPKSFVAVQ 67

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG-----KEGLIPSNYIEMK 56
           +A+  + +  ED+L+F K Q + + ++ED   WY  E         EG+ P +++ ++
Sbjct: 10 VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDA-EWYFGEYQDSNGDVIEGIFPKSFVAVQ 67

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 76.5 bits (189), Expect = 5e-18
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYI 206
           V+ALYD+  +   EL F RG +I    +    WW G+     +  FP+ Y+
Sbjct: 10  VKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGK-EGLIPSNYIEM 55
            A +D+ A   DEL+F +  ++  ++ E    W++ +   + +   PSNY+E 
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSKEPG-GWWKGDYGTRIQQYFPSNYVED 62

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 76.6 bits (189), Expect = 5e-18
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNME 210
             +C V+AL+D+  Q   EL F +  +I   ++ +  WW G+ G +K L FP+ Y+  M 
Sbjct: 4   TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63

Query: 211 DD 212
           + 
Sbjct: 64  NP 65

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLI-PSNYIE 54
            A  D+ A  EDEL+F KS +++ +  ++   W+R +  GK+ L  PSNY+E
Sbjct: 9  VKALFDYKAQREDELTFIKSAIIQNVEKQEG-GWWRGDYGGKKQLWFPSNYVE 60

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 76.0 bits (188), Expect = 5e-18
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGARKGLFPATYI 206
           ++A+Y +  Q   E+    GD+ITV    D   W +GE    KGLFP +Y 
Sbjct: 3   MEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 66.8 bits (164), Expect = 1e-14
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A + + A  +DE+S     ++ ++  +D   W   E DG +GL P++Y +
Sbjct: 5  AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 77.1 bits (190), Expect = 6e-18
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYI 206
                 +ALY F  +   E+ F  GD+I V ++   +  W +G      G FP  Y+
Sbjct: 3   SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 63.3 bits (154), Expect = 6e-13
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIE 54
          A + F A   DE+SF    ++++      +  W      G  G  P NY+E
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 77.1 bits (190), Expect = 6e-18
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 23/83 (27%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
           +  + +A YDF      E+ FR GD++ +  +  Q    G                    
Sbjct: 16  DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRG-------------------- 55

Query: 213 MNWYRAELDGK-EGLIPSNYIEM 234
             W  A LDG+  GLIP+NY+++
Sbjct: 56  --WLLASLDGQTTGLIPANYVKI 76

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 76.8 bits (189), Expect = 1e-17
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMN---WYRAELDGK-EGLIPSNYIEM 55
          + A A++DF A +++E+SFR   +L +   E       W  A LDG+  GLIP+NY+++
Sbjct: 18 VVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKI 76

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 76.1 bits (188), Expect = 6e-18
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 25/83 (30%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           +V A+YDF   E  +L   RG    + +++D HWW                         
Sbjct: 4   IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRAR---------------------- 41

Query: 216 YRAELDGKEGLIPSNYIEMKNHD 238
              +  G EG IPSNY+  K  +
Sbjct: 42  ---DKYGSEGYIPSNYVTGKKSN 61

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
           +A +DF AT   +L   + Q   IL   D   W   +  G EG IPSNY+  K  +
Sbjct: 5  VVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 76.0 bits (188), Expect = 7e-18
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
             I ++DF A ++DEL+ +    + IL+ +   +W+  +L   GK GL+P+ +IE
Sbjct: 3  ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 68.7 bits (169), Expect = 2e-15
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 25/78 (32%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITV-TDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
               YDF  +   EL  + GD + +  D+  + WW  ++                     
Sbjct: 5   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVD------------------- 45

Query: 216 YRAELDGKEGLIPSNYIE 233
                 GK GL+P+ +IE
Sbjct: 46  -----SGKSGLVPAQFIE 58

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 76.1 bits (188), Expect = 7e-18
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVIT-VTDRSDQHWWHGEIGARKGLFPATYI 206
              +ALY    +   EL F  G V   V    +  W  G +  + GL P  Y+
Sbjct: 11  RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 72.7 bits (179), Expect = 1e-16
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
           +A A +   A  + ELSF    V   ++   +  W    L+GK GLIP NY+E 
Sbjct: 11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 75.8 bits (187), Expect = 9e-18
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 25/77 (32%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
             A+ DFT Q+ G+L F++G+++ V ++    WW  +                       
Sbjct: 13  YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAK----------------------- 49

Query: 217 RAELDGKEGLIPSNYIE 233
             +  G EGL+P  Y+E
Sbjct: 50  --DAKGNEGLVPRTYLE 64

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 71.5 bits (176), Expect = 3e-16
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           E IA  DF A    +L+F+K ++L ++  + D  W   +  G EGL+P  Y+E
Sbjct: 11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 76.4 bits (188), Expect = 1e-17
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 27/85 (31%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNM 209
               +VQ LY F+     EL F +G+ + V ++  +D  WW  +                
Sbjct: 15  RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCK---------------- 58

Query: 210 EDDMNWYRAELDGKEGLIPSNYIEM 234
                       G+ GL+P NY+ +
Sbjct: 59  ---------NARGQVGLVPKNYVVV 74

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 70.6 bits (173), Expect = 1e-15
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRAE-LDGKEGLIPSNYIEM 55
              + F++  E+EL+F K + ++++   E+D  W++ +   G+ GL+P NY+ +
Sbjct: 20 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 74

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
               +VQ LY F+     EL F + 
Sbjct: 15  RVLHVVQTLYPFSSVTEEELNFEKG 39

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 74.9 bits (185), Expect = 1e-17
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGL-FPATYILNMED 211
           +  V+AL+D+  Q   EL F +  +I   ++ D  WW G+ G +K L FP+ Y+  M +
Sbjct: 3   KSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMIN 61

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLI-PSNYIE 54
            A  D+ A  EDEL+F KS +++ +  +D   W+R +  GK+ L  PSNY+E
Sbjct: 6  VKALFDYKAQREDELTFTKSAIIQNVEKQDG-GWWRGDYGGKKQLWFPSNYVE 57

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 76.0 bits (187), Expect = 1e-17
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 133 YHRTASVSRSQDVKLRDMV---PEECLVQALYDFTPQEPGELEFRRGDVITVTDR----- 184
           +H ++ V    +      +   P   +  A++D+      EL  RRGD + V  +     
Sbjct: 5   HHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVS 64

Query: 185 SDQHWWHGEIGA-RKGLFPATYI 206
            D+ WW G++ + R G+FP+ Y+
Sbjct: 65  GDEGWWTGQLPSGRVGVFPSNYV 87

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 60.6 bits (147), Expect = 5e-12
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIE 54
            A  D+ A  ++EL+ R+   +++L+ +     D  W+  +L  G+ G+ PSNY+ 
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 312 YHRTASVSRSQDVKLRDMV---PEECLVQALYDFTPQEPGELEFRRDLKIK 359
           +H ++ V    +      +   P   +  A++D+      EL  RR  +++
Sbjct: 5   HHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQ 55

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR-----KGLFPATYI 206
           + Q    +      +L    G +I +  ++   WW GE+ AR     KG FPA+++
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGK-----EGLIPSNYIEM 55
          A     + A+  ++LS    Q++ IL       W++ EL  +     +G  P++++++
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTS-GWWQGELQARGKKRQKGWFPASHVKL 66

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 156 LVQALYDFTP--QEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY--ILNMED 211
             + +    P   +   L    G+++ VT  +    W GE   ++G FP T+  +L+ ++
Sbjct: 8   YARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQN 67

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3  AIAKHDFNATA--EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A         A  +  L+    +++K+  +      +  E +GK G  P  ++ +
Sbjct: 9  ARVIQKRVPNAYDKTALALEVGELVKVTKINVS-GQWEGECNGKRGHFPFTHVRL 62

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
                 V   +  +P +   L+ ++GD+I +  +     W G +  + G F   Y+
Sbjct: 8   FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYV 63

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 60.1 bits (146), Expect = 5e-12
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
                 +    D L  +K  ++ I++       +   L+ K G     Y+++
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPM-GTWMGLLNNKVGTFKFIYVDV 65

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 74.1 bits (183), Expect = 3e-17
 Identities = 14/59 (23%), Positives = 35/59 (59%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
          ++ I ++D++A  +DEL+ R  ++++ +    +  W   EL+G+ G+ P N+++    +
Sbjct: 2  VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 71.1 bits (175), Expect = 4e-16
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIGARKGLFPATYILNMEDD 212
               YD+      EL  R G++I    +   + W  GE+  R+G+FP  ++  ++ +
Sbjct: 4   YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 74.7 bits (184), Expect = 3e-17
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 22/88 (25%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME 210
                +  A+Y F  + P EL       + + +  D                        
Sbjct: 10  AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDV----------------------T 47

Query: 211 DDMNWYRAELDGKEGLIPSNYIEMKNHD 238
            +  W+ AE++GK+G +PSNYI      
Sbjct: 48  GNTEWWLAEVNGKKGYVPSNYIRKTESG 75

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYIEMKNHD 59
           A + F A   +ELS   +Q LKIL  +D   +  W+ AE++GK+G +PSNYI      
Sbjct: 17 FAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG 75

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 74.3 bits (183), Expect = 3e-17
 Identities = 16/54 (29%), Positives = 22/54 (40%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
           P              +   L    GD++ VT  +    W GE+  RKGLFP T+
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTH 54

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          +AI K    A  +  L+     ++K+  M  +   +  E++G++GL P  ++++
Sbjct: 5  KAIQKRVPCAYDKTALALEVGDIVKVTRMNIN-GQWEGEVNGRKGLFPFTHVKI 57

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 74.3 bits (183), Expect = 4e-17
 Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 21/89 (23%)

Query: 148 RDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL 207
           RD          L+DF  +   EL FR GDV  V  + +Q WW   +             
Sbjct: 4   RDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLD------------ 51

Query: 208 NMEDDMNWYRAELDGKEGLIPSNYIEMKN 236
                     A     +G +P NY+  + 
Sbjct: 52  ---------EAGGAVAQGYVPHNYLAERE 71

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 62.4 bits (152), Expect = 7e-13
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-----GKEGLIPSNYIEMK 56
          + +   DF +  ++ELSFR   V  +   E+   W+   LD       +G +P NY+  +
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQ-WWWATLLDEAGGAVAQGYVPHNYLAER 70

Query: 57 N 57
           
Sbjct: 71 E 71

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 73.8 bits (182), Expect = 4e-17
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
            +A+YD++ Q+  E+ FR GD I      D  W +G +    R G+ PA YI
Sbjct: 9   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM 55
            A +D++A  EDE+SFR    +  +   DD  W    +   G+ G++P+NYIE 
Sbjct: 9  YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDD-GWMYGTVQRTGRTGMLPANYIEF 62

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 74.3 bits (183), Expect = 5e-17
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 28/95 (29%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
              L  ALYD+      +L F +G+   + +     WW                      
Sbjct: 5   GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEA-------------------- 44

Query: 213 MNWYRAELDGKEGLIPSNYIEMKNH----DWYYGR 243
               R+   G+ G IPSNY+   +           
Sbjct: 45  ----RSLTTGETGYIPSNYVAPVDSIQGEQKLISE 75

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKNH--- 58
          +A +D+NAT   +LSF K +  +IL      +W+ A     G+ G IPSNY+   +    
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPG-DWWEARSLTTGETGYIPSNYVAPVDSIQG 68

Query: 59 -DWYYGR 64
                 
Sbjct: 69 EQKLISE 75

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 73.8 bits (182), Expect = 5e-17
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 24/78 (30%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           +  AL+ ++   P EL+ ++G+ I V  +    W  G                       
Sbjct: 9   MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGL---------------------- 46

Query: 216 YRAELDGKEGLIPSNYIE 233
             + L G+ G+ PS+Y+ 
Sbjct: 47  --SLLTGRTGIFPSDYVI 62

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
          +A H ++A   +EL  +K + +++L    D  W +    L G+ G+ PS+Y+ 
Sbjct: 11 VALHTYSAHRPEELDLQKGEGIRVLGKYQD-GWLKGLSLLTGRTGIFPSDYVI 62

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 73.9 bits (182), Expect = 5e-17
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 27/85 (31%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNM 209
               +VQ LY F+     EL F +G+ + V ++  +D  WW  +                
Sbjct: 4   RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN--------------- 48

Query: 210 EDDMNWYRAELDGKEGLIPSNYIEM 234
                       G+ GL+P NY+ +
Sbjct: 49  ----------ARGQVGLVPKNYVVV 63

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRAE-LDGKEGLIPSNYIEM 55
              + F++  E+EL+F K + ++++   E+D  W++ +   G+ GL+P NY+ +
Sbjct: 9  VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 63

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 73.9 bits (182), Expect = 5e-17
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             E     +  +T Q   E+ F +G  + V  ++ + WW+     ++G  PA+Y+
Sbjct: 6   SGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYL 60

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 65.0 bits (159), Expect = 9e-14
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          + +    + + ++DE+ F K   ++++    +  W+     GKEG  P++Y++
Sbjct: 10 KYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLE-GWWYIRYLGKEGWAPASYLK 61

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 73.4 bits (181), Expect = 6e-17
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
             ALYDF P+   EL    GD++ ++ +  Q W   E   G++ GL P  ++
Sbjct: 4   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM 55
          A+A +DF    ++EL   +  ++ I        W  AE     K GL+P  ++  
Sbjct: 4  AVALYDFEPENDNELRLAEGDIVFISYKHGQ-GWLVAENESGSKTGLVPEEFVSY 57

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 73.0 bits (180), Expect = 9e-17
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGA-RKGLFPATYI 206
           V+ALYD+  QE  EL F+ GD +T     D+  W  G + + + GL+PA Y+
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 65.3 bits (160), Expect = 5e-14
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE 54
            A +D++   +DELSF+    L  L  ED+  W R  L  G+ GL P+NY+E
Sbjct: 6  VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR---KGLFPATYI 206
            LYDF  ++  EL    G+ + +    +  W+  +   R    GL P  ++
Sbjct: 10  VLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMKNHD 59
          AI  +DF A   DEL+    + L I    +   W+ A+     G  GL+P  ++ +   D
Sbjct: 8  AIVLYDFKAEKADELTTYVGENLFICAHHNC-EWFIAKPIGRLGGPGLVPVGFVSII--D 64

Query: 60 WYYGRITRADAERLLSN 76
             G  T  D    + +
Sbjct: 65 IATGYATGNDVIEDIKS 81

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 17/53 (32%), Positives = 32/53 (60%)

Query: 142 SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI 194
           +  VK  D    + LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+
Sbjct: 9   AAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 48.6 bits (116), Expect = 5e-08
 Identities = 9/40 (22%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD 42
           +A +D+   +  E++ +K  +L +LN  +  +W++ E++
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVN 62

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 321 SQDVKLRDMVPEECLVQALYDFTPQEPGELEFRR 354
           +  VK  D    + LV ALYD+  + P E+  ++
Sbjct: 9   AAYVKKLDSGTGKELVLALYDYQEKSPREVTMKK 42

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 71.9 bits (177), Expect = 3e-16
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
           I ++DF A ++DEL+ +    + IL+ +   +W+  +L   GK GL+P+ +IE
Sbjct: 9  GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 62

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 66.1 bits (162), Expect = 3e-14
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 25/78 (32%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITV-TDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
               YDF  +   EL  + GD + +  D+  + WW  ++                     
Sbjct: 9   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDS------------------ 50

Query: 216 YRAELDGKEGLIPSNYIE 233
                 GK GL+P+ +IE
Sbjct: 51  ------GKSGLVPAQFIE 62

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 71.5 bits (176), Expect = 3e-16
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATY 205
            +A+Y + PQ   ELE R GD + V  + D  W+ G      + G FP  Y
Sbjct: 10  YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNY 60

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 59.2 bits (144), Expect = 9e-12
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
            A + +    EDEL  R+   + ++   DD  W+        K G  P NY+ 
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDD-GWFVGVSRRTQKFGTFPGNYVA 62

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 70.8 bits (174), Expect = 5e-16
 Identities = 13/46 (28%), Positives = 28/46 (60%)

Query: 167 EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
            P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+  ++  
Sbjct: 2   GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 47

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 10/45 (22%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 15 DELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
           E++ +K  +L +LN  +  +W++ E++ ++G +P+ Y++  +  
Sbjct: 4  REVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVKKLDSG 47

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 71.4 bits (175), Expect = 5e-16
 Identities = 10/55 (18%), Positives = 21/55 (38%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
                      +   +  E+ F  G  + V ++ +  WW+   G  +G  P+ Y+
Sbjct: 6   SGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYL 60

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +    +    + E+SF     +++L  ++   W+       EG  PS+Y+ 
Sbjct: 12 MTCSAYQKVQDSEISFPAGVEVQVLEKQES-GWWYVRFGELEGWAPSHYLV 61

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 71.8 bits (176), Expect = 6e-16
 Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 33/102 (32%)

Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEP--------GELEFRRGDVITVTDRSDQHWWH 191
           S S             +  AL+D+ P            EL F+ G +I V    D   + 
Sbjct: 3   SGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGF- 61

Query: 192 GEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
                                   YR E   + GLIP N + 
Sbjct: 62  ------------------------YRGETCARLGLIPCNMVS 79

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 71.1 bits (174), Expect = 1e-15
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 4  IAKHDFNA--------TAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A  D++          AE+EL F++ Q++K+   +D   +YR E   + GLIP N + 
Sbjct: 21 VALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVS 79

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 70.8 bits (174), Expect = 7e-16
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 55
            +A + F  ++E  +S  + + L ++  +    W R    +G EG +P++Y+ +
Sbjct: 9  HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 65.8 bits (161), Expect = 3e-14
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 24/83 (28%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
                  A+Y F     G +    G+ +++ +      W                     
Sbjct: 5   SSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGW--------------------- 43

Query: 212 DMNWYRAELDGKEGLIPSNYIEM 234
                    +G EG +P++Y+ +
Sbjct: 44  ---TRVRRKEGGEGYVPTSYLRV 63

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 70.7 bits (173), Expect = 9e-16
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 155 CLVQALYDFTPQ-EPGELEFRRGDVITVTDRSDQHWWHGEI------GARKGLFPATYI 206
             V+AL DF    +P  L  R GDVITV ++     W G I        R G FP   +
Sbjct: 19  LKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV 77

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 49.1 bits (117), Expect = 5e-08
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 1  MEAIAKHDF-NATAEDELSFRKSQVLKILNMEDDMNWYRAELDG------KEGLIPSNYI 53
          ++  A  DF N      L+ R   V+ +L    D   ++  +        + G  P   +
Sbjct: 19 LKVRALKDFWNLHDPTALNVRAGDVITVLEQHPD-GRWKGHIHESQRGTDRIGYFPPGIV 77

Query: 54 EM 55
          E+
Sbjct: 78 EV 79

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 71.9 bits (176), Expect = 1e-15
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 23/78 (29%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
            LY+F  +   EL+   G+ +++    D  W+  +   R                     
Sbjct: 8   TLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRL-------------------- 47

Query: 219 ELDGKEGLIPSNYIEMKN 236
              G  GL+P +Y+ + +
Sbjct: 48  ---GGPGLVPVSYVRIID 62

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMKN 57
          A+  ++F A  +DEL     + L I    D   W+ A+     G  GL+P +Y+ + +
Sbjct: 6  AVTLYEFKAERDDELDVSPGENLSICAHYDY-EWFIAKPINRLGGPGLVPVSYVRIID 62

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 70.3 bits (172), Expect = 1e-15
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 166 QEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 3   MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 43

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 11/45 (24%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 11 ATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          A    E++ +K  +L +LN  +  +W++ E++ ++G +P+ Y++ 
Sbjct: 2  AMGPREVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVKK 45

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 25/81 (30%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
           ++ LV AL+ + P   G+L F +G+ + + ++S   WW                      
Sbjct: 5   QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKA-------------------- 43

Query: 213 MNWYRAELDGKEGLIPSNYIE 233
               ++   G+EG IP N++ 
Sbjct: 44  ----QSLTTGQEGFIPFNFVA 60

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
          IA H +  + + +L F K + L+IL    +  W++A+    G+EG IP N++ 
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGE--WWKAQSLTTGQEGFIPFNFVA 60

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 332 EECLVQALYDFTPQEPGELEFRRDLKIK 359
           ++ LV AL+ + P   G+L F +  +++
Sbjct: 5   QDNLVIALHSYEPSHDGDLGFEKGEQLR 32

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 70.0 bits (172), Expect = 1e-15
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 26/85 (30%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
            EE +V A +D+  Q+  EL+ ++ + + + D S   WW                     
Sbjct: 5   AEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSK-SWWRVR------------------ 45

Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
                      K G +PSNY+E KN
Sbjct: 46  -------NSMNKTGFVPSNYVERKN 63

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN 57
           +AK D+ A  E EL  +K++ L +L+      W+R      K G +PSNY+E KN
Sbjct: 10 VVAKFDYVAQQEQELDIKKNERLWLLDDSKS--WWRVRNSMNKTGFVPSNYVERKN 63

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
            EE +V A +D+  Q+  EL+ +++
Sbjct: 5   AEEVVVVAKFDYVAQQEQELDIKKN 29

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 70.0 bits (172), Expect = 1e-15
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             +Q LY+F  + P EL   +G+ + V D S + W       R G  P+  +
Sbjct: 8   LKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNIL 59

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
          ++    ++F A    EL+  + + L++L+      W      G+ G IPSN +E  +
Sbjct: 8  LKMQVLYEFEARNPRELTVVQGEKLEVLDHSKR-WWLVKNEAGRSGYIPSNILEPLS 63

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 60  WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++  ++  DAE LL  +   G+FL R S  + GDFSLSV+  D V H ++         
Sbjct: 4   WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63

Query: 119 LWVVKFNSLNELVEYH 134
               KF +L ELVEY+
Sbjct: 64  YGGEKFATLTELVEYY 79

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A* Length = 532

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           W++  ++  DAE LL  +   G+FL R S  + GDFSLSV+  D V H ++         
Sbjct: 4   WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63

Query: 298 LWVVKFNSLNELVEYH 313
               KF +L ELVEY+
Sbjct: 64  YGGEKFATLTELVEYY 79

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 23/80 (28%)

Query: 157 VQALYDFTPQEP-GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
            +ALYDF P+ P  E+  ++GD++ +  + D                      +  D +W
Sbjct: 10  ARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSDW 48

Query: 216 YRAEL-DGKEGLIPSNYIEM 234
           ++    +G  G IP NYIE+
Sbjct: 49  WKVRTKNGNIGYIPYNYIEI 68

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 3  AIAKHDFNA-TAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIEM 55
          A A +DF     E E++ +K  ++ IL+ +D    D +W++    +G  G IP NYIE+
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 60  WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           W++  ++  DAE LL  +   G+FL R S  + GDFSLSV+  D V H ++         
Sbjct: 4   WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63

Query: 119 LWVVKFNSLNELVEYH 134
               KF +L ELVEY+
Sbjct: 64  YGGEKFATLTELVEYY 79

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens} Length = 595

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 239 WYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           W++  ++  DAE LL  +   G+FL R S  + GDFSLSV+  D V H ++         
Sbjct: 4   WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGDFYDL 63

Query: 298 LWVVKFNSLNELVEYH 313
               KF +L ELVEY+
Sbjct: 64  YGGEKFATLTELVEYY 79

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 26/85 (30%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
                V   YDF  +   EL  ++ DV+ V D S   WW                     
Sbjct: 6   GALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSR-KWWKVR------------------ 46

Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
                  +  G+EG +P N +    
Sbjct: 47  -------DPAGQEGYVPYNILTPYP 64

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMKN 57
           +  +DF A    ELS ++  VL++L+      W++     G+EG +P N +    
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVLDDSRK--WWKVRDPAGQEGYVPYNILTPYP 64

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRD 355
                V   YDF  +   EL  ++ 
Sbjct: 6   GALKWVLCNYDFQARNSSELSVKQR 30

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 28/91 (30%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD 212
           EE +V A +D+T Q+  EL+ ++ + + + D S   WW                      
Sbjct: 3   EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVR------------------- 42

Query: 213 MNWYRAELDGKEGLIPSNYIEMK--NHDWYY 241
                     + G +PSNY+E K  +H  ++
Sbjct: 43  ------NAANRTGYVPSNYVERKLEHHHHHH 67

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK--NHD 59
           IAK D+ A  + EL  +K++ L +L+      W+R      + G +PSNY+E K  +H 
Sbjct: 7  VIAKWDYTAQQDQELDIKKNERLWLLDDSKT--WWRVRNAANRTGYVPSNYVERKLEHHH 64

Query: 60 WYY 62
           ++
Sbjct: 65 HHH 67

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 332 EECLVQALYDFTPQEPGELEFRRD 355
           EE +V A +D+T Q+  EL+ +++
Sbjct: 3   EEVIVIAKWDYTAQQDQELDIKKN 26

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
               V+ LYDFT +   EL   + +V+ V +   Q W       + G  P   +
Sbjct: 6   SGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 65.0 bits (159), Expect = 7e-14
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
              +DF A   +ELS  K +VL++L       W      G+ G +P N + 
Sbjct: 10 VKILYDFTARNANELSVLKDEVLEVLEDGRQ-WWKLRSRSGQAGYVPCNILG 60

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 68.4 bits (168), Expect = 3e-15
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 156 LVQALYDFTPQ-EPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYI 206
           + +A YDF     P EL  ++GDVI +T      W  G++  G+++G  P  Y+
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM 55

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3  AIAKHDFNATA-EDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
            A +DF  +    EL  +K  V+ I   E    W   +L    KEG +P+ Y++
Sbjct: 3  FEAAYDFPGSGSPSELPLKKGDVIYITREEPS-GWSLGKLLDGSKEGWVPTAYMK 56

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 68.9 bits (169), Expect = 3e-15
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATY 205
           V+    F  ++  E+  ++ DV+ V  + D  W +GE       G FP  +
Sbjct: 20  VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGETGWFPEDF 69

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
                F A   DE++ +++ V+ +L  ED   W   E   DG+ G  P ++  
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQED--GWLYGERLRDGETGWFPEDFAR 71

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 69.1 bits (169), Expect = 4e-15
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 26/100 (26%)

Query: 136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG 195
             +  +   +     + EE +V A +D+T Q+  EL+ ++ + + + D S   WW     
Sbjct: 13  DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWWRVR-- 69

Query: 196 ARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMK 235
                                      + G +PSNY+E K
Sbjct: 70  -----------------------NAANRTGYVPSNYVERK 86

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 65.2 bits (159), Expect = 9e-14
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRA-ELDGKEGLIPSNYIEMK 56
           IAK D+ A  + EL  +K++ L +L+      W+R      + G +PSNY+E K
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLLDDSKT--WWRVRNAANRTGYVPSNYVERK 86

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 315 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
             +  +   +     + EE +V A +D+T Q+  EL+ +++
Sbjct: 13  DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKN 53

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 68.6 bits (168), Expect = 5e-15
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 4  IAKHDF-------NATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          IA  D+           +  L+ R   V+ +    DD  +Y  EL G  GL+P++ ++
Sbjct: 11 IAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLD 68

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 65.9 bits (161), Expect = 5e-14
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 32/89 (35%)

Query: 152 PEECLVQALYDFTPQEP-------GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPAT 204
               ++ A  D+ P +        G L  R GDV+ V                       
Sbjct: 5   SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMV----------------------- 41

Query: 205 YILNMEDDMNWYRAELDGKEGLIPSNYIE 233
                 DD  +Y  EL G  GL+P++ ++
Sbjct: 42  --YGPMDDQGFYYGELGGHRGLVPAHLLD 68

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 69.0 bits (168), Expect = 9e-15
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 21/82 (25%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITV-----TDRSDQHWWHGEIGARKGLFPATYILNMED 211
           VQA +D+T  +  EL+ + GDV+ V      +  D+ W  G                +++
Sbjct: 47  VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG----------------VKE 90

Query: 212 DMNWYRAELDGKEGLIPSNYIE 233
                  EL+   G+ P N+ E
Sbjct: 91  SDWNQHKELEKCRGVFPENFTE 112

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYR----------AELDGKEGLI 48
             A+HD+ AT  DEL  +   V+ ++  ++    D  W             EL+   G+ 
Sbjct: 47  VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 106

Query: 49  PSNYIE 54
           P N+ E
Sbjct: 107 PENFTE 112

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 67.8 bits (166), Expect = 9e-15
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 23/79 (29%)

Query: 157 VQALYDFTPQEPG-ELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
            +ALYDF P+ P  E+  ++GD++ +  + D                      +  D +W
Sbjct: 17  ARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSDW 55

Query: 216 YRAEL-DGKEGLIPSNYIE 233
           ++    +G  G IP NYIE
Sbjct: 56  WKVRTKNGNIGYIPYNYIE 74

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 3  AIAKHDFNA-TAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIE 54
          A A +DF     E E++ +K  ++ IL+ +D    D +W++    +G  G IP NYIE
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 67.9 bits (166), Expect = 9e-15
 Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 25/82 (30%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
            +   +  L D+   +     FRRG+ + V       WW                     
Sbjct: 15  LDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEG-GWWKA------------------- 54

Query: 212 DMNWYRAELDGKEGLIPSNYIE 233
                 +   G+E  IP   + 
Sbjct: 55  -----ISLSTGRESYIPGICVA 71

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
               D+ +       FR+ + L++++ E    W++A     G+E  IP   + 
Sbjct: 20 LAVLSDYPSPDISPPIFRRGEKLRVISDEGG--WWKAISLSTGRESYIPGICVA 71

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIK 359
            +   +  L D+   +     FRR  K++
Sbjct: 15  LDSDFLAVLSDYPSPDISPPIFRRGEKLR 43

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 23/79 (29%)

Query: 157 VQALYDFTPQEP-GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
            +ALYDF P+ P  E+  ++GD++ +  + D                      +  D +W
Sbjct: 17  ARALYDFVPENPEMEVALKKGDLMAILSKKDP---------------------LGRDSDW 55

Query: 216 YRAEL-DGKEGLIPSNYIE 233
           ++    +G  G IP NYIE
Sbjct: 56  WKVRTKNGNIGYIPYNYIE 74

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 59.5 bits (144), Expect = 1e-11
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 3  AIAKHDFNA-TAEDELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIE 54
          A A +DF     E E++ +K  ++ IL+ +D    D +W++    +G  G IP NYIE
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 68.6 bits (167), Expect = 2e-14
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYI 206
            +E    A+Y+F      +L  + GDV+ + +     W+ G +      +G+FP ++I
Sbjct: 57  DKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFI 113

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 60.9 bits (147), Expect = 8e-12
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMK 56
            +A ++F  +   +LS +   V++I   E   +WYR  L      +G+ P ++I +K
Sbjct: 62  GVAIYNFQGSGAPQLSLQIGDVVRIQ--ETCGDWYRGYLIKHKMLQGIFPKSFIHIK 116

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 26/84 (30%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIGARKGLFPATYILNME 210
                 + +Y +   +P EL     +V+ V +  D + W                     
Sbjct: 11  NYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKAR----------------- 53

Query: 211 DDMNWYRAELDGKEGLIPSNYIEM 234
                      G+ G +P  Y++ 
Sbjct: 54  --------NKVGQVGYVPEKYLQF 69

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM 55
          +     + + A+  DEL+  + +VL+++   D  +W +A    G+ G +P  Y++ 
Sbjct: 14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQF 69

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 153 EECLVQALYDFTPQ-EPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM 209
           ++   +A YDF       EL  ++GD++ ++      W   ++  G+++G  P  Y+   
Sbjct: 1   KDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY 60

Query: 210 EDDMN 214
           +D  N
Sbjct: 61  KDTRN 65

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 3  AIAKHDFNAT-AEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
            A +DF  + +  EL  +K  ++ I   E    W  A+L    KEG +P+ Y+ 
Sbjct: 5  FEAAYDFPGSGSSSELPLKKGDIVFISRDEPS-GWSLAKLLDGSKEGWVPTAYMT 58

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 7/59 (11%)

Query: 3  AIAKHDFNAT-------AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           +A +D++          E EL+F    ++ +    D+  +Y  EL+G++GL+PSN++E
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 66.3 bits (162), Expect = 4e-14
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 32/84 (38%)

Query: 157 VQALYDFTPQEP-------GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           + ALYD+ P+E         EL F  GD+ITV    D+  +                   
Sbjct: 10  MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGF------------------- 50

Query: 210 EDDMNWYRAELDGKEGLIPSNYIE 233
                 Y  EL+G++GL+PSN++E
Sbjct: 51  ------YYGELNGQKGLVPSNFLE 68

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
             + +  +   EL    G  +TV +     WW G    + G FP+ Y+L   D
Sbjct: 6   VXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEVD 58

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 64.8 bits (158), Expect = 6e-14
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          + A     + A  EDELS      + ++    D  W+R   +G+ G  PSNY+  
Sbjct: 2  IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSD-GWWRGSYNGQIGWFPSNYVLE 55

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 71.6 bits (174), Expect = 4e-14
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +AL+DFT     EL F+ GDVI +  R ++ W  G +    G+FP +++
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 226

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
           A A  DF   ++ EL+F+   V+ +L+  +  +W    + G  G+ P +++++
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINK-DWLEGTVRGATGIFPLSFVKI 228

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 65.0 bits (159), Expect = 7e-14
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 157 VQALYDFTPQE-PGELEFRRGDVITVTDRSDQH-WWHGEI--GARKGLFPATYILNMED 211
           V+ ++  T       L F +GDVIT+    ++  W +GE      +G FP++Y   +E+
Sbjct: 9   VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEE 67

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 5  AKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
                A + +  LSF +  V+ +L  E+   W   E       G  PS+Y +
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTK 63

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 65.0 bits (159), Expect = 8e-14
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
            +A++ F P+   ELE    D + V  +++ +W+         +G+FPA Y 
Sbjct: 9   HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
            A   F    EDEL       L +    +D  WY A     G  G+ P+ Y  
Sbjct: 9  HRAIFRFVPRHEDELELEVDDPLLVELQAED-YWYEAYNMRTGARGVFPAYYAI 61

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 64.1 bits (157), Expect = 1e-13
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
            +A++ F P+   ELE    D + V  +++ +W+         +G+FPA Y 
Sbjct: 6   HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 57

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIE 54
            A   F    EDEL       L +    +D  WY A     G  G+ P+ Y  
Sbjct: 6  HRAIFRFVPRHEDELELEVDDPLLVELQAED-YWYEAYNMRTGARGVFPAYYAI 58

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 157 VQALYDFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGA-RKGLFPATYILNMEDDM 213
            +ALY +     +  E+ F + +++ V+D   + WW         G+ P+ Y+  ++   
Sbjct: 8   AKALYPYDADDDDAYEISFEQNEILQVSDIEGR-WWKARRANGETGIIPSNYVQLIDGPE 66

Query: 214 NWYR 217
             +R
Sbjct: 67  EMHR 70

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 18/56 (32%), Positives = 39/56 (69%), Gaps = 5/56 (8%)

Query: 3  AIAKHDFNATAED--ELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM 55
          A A + ++A  +D  E+SF ++++L++ ++E    W++A   +G+ G+IPSNY+++
Sbjct: 8  AKALYPYDADDDDAYEISFEQNEILQVSDIEGR--WWKARRANGETGIIPSNYVQL 61

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 157 VQALYDFTPQ-EPGELEFRRGDVITVTDRS-DQHWWHGEIGA-RKGLFPATYI 206
            + +YDF  +    EL    G++ITVT+ +    W  G+     +GL P  Y+
Sbjct: 12  ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM 55
          A   +DF A    +EL+  + +++ + N      W   +   G++GL+P++Y+E+
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEI 66

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 29/91 (31%)

Query: 148 RDMVPEEC-LVQALYDFTPQEPGELEFRRGDVITVT----DRSDQHWWHGEIGARKGLFP 202
           RD+       +Q +Y +TPQ   ELE   GD I ++      + + W +G          
Sbjct: 9   RDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYG---------- 58

Query: 203 ATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
                          +   G  GL+P NYI 
Sbjct: 59  --------------TSLTTGCSGLLPENYIT 75

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMED---DMNWY--RAELDGKEGLIPSNYIE 54
            + +    +DEL       + +  ME       W    +   G  GL+P NYI 
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT 75

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 157 VQALYDFTPQE-PGELEFRRGDVITVTDRSDQH-WWHGEIGA--RKGLFPATY 205
           V+ ++  T       L F +GDV+T+    ++  W +GE      +G FP++Y
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSY 62

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 3  AIAKHDFNATA-EDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
                  A   +  LSF +  VL +L  E+   W   E       G  PS+Y +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 157 VQALYDFTPQE-PGELEFRRGDVITV-TDRSDQHWWHGEIGA--RKGLFPATY 205
           V+A++     +    L F+ GD+IT+    +   W +GE      +G FP +Y
Sbjct: 10  VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSY 62

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 5  AKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEM 55
          A     A      LSF++  ++ +L  E    W+  E +     G  P +Y  +
Sbjct: 12 AIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW---HGEIGARKGLFPATYI 206
            + LY +  ++  E+    GD I++  R     W   + +     GL P TYI
Sbjct: 4   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYIEM 55
          ME    + +    +DE++      + ++  +    W     +  G+ GL+P+ YI +
Sbjct: 2  MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 25/78 (32%)

Query: 157 VQALYDFT-PQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           V+A+  +T   +  E+ F +GD+  V +  +  W                         W
Sbjct: 10  VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWM------------------------W 45

Query: 216 YRAELDGKEGLIPSNYIE 233
                  ++GLI  + +E
Sbjct: 46  VTNLRTDEQGLIVEDLVE 63

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 3  AIAKHDFNATA-EDELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYIE 54
            A   +      DE+SF K  +  + N  +D  W         ++GLI  + +E
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELED-GWMWVTNLRTDEQGLIVEDLVE 63

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 26/82 (31%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
             ++ YDF  +   EL   + DV+ + D   Q WW                         
Sbjct: 3   YAKSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVR---------------------- 39

Query: 216 YRAELDGKEGLIPSNYIEMKNH 237
                 G  G +P+N +++   
Sbjct: 40  ---NASGDSGFVPNNILDIMRT 58

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNH 58
          A +K+DF A    ELS  K  VL+IL+      W++     G  G +P+N +++   
Sbjct: 4  AKSKYDFVARNSSELSVMKDDVLEILDDRRQ--WWKVRNASGDSGFVPNNILDIMRT 58

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 63.4 bits (154), Expect = 6e-13
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 4  IAKHDF------NATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE 54
          +A++ +      N   E EL     + L +    D+  +Y  E LDG+ GL+PSN+++
Sbjct: 21 VARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 63.0 bits (153), Expect = 7e-13
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 30/88 (34%)

Query: 152 PEECLVQALYDFTPQE------PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATY 205
            +  L  A Y + P +        EL    G  + V    D+  +               
Sbjct: 15  GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGF--------------- 59

Query: 206 ILNMEDDMNWYRAELDGKEGLIPSNYIE 233
                    +    LDG+ GL+PSN+++
Sbjct: 60  ---------YEGELLDGQRGLVPSNFVD 78

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 63.1 bits (153), Expect = 7e-13
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
           PE    +ALY F  + P +LE   GDV+ V+  + Q     E G R              
Sbjct: 9   PEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERC-----------PQ 57

Query: 212 DMNWY--RAELDGKEGLIPSNYIEM 234
            + W     E   + G  P  Y+E 
Sbjct: 58  SVGWMPGLNERTRQRGDFPGTYVEF 82

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 16/71 (22%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILN--------------MEDDMNWY--RAELDGK 44
           +  A + F     ++L      VL +                    + W     E   +
Sbjct: 12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 71

Query: 45 EGLIPSNYIEM 55
           G  P  Y+E 
Sbjct: 72 RGDFPGTYVEF 82

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 63.1 bits (153), Expect = 7e-13
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSD----QHWWHGEIG 195
           S S    L    P E L QA  +F   +  ++    GD++ V  + D    Q+ W  + G
Sbjct: 3   SGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG 62

Query: 196 ARKGLFPATYI 206
             KG   ++++
Sbjct: 63  VTKGFVYSSFL 73

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 48.8 bits (116), Expect = 7e-08
 Identities = 10/54 (18%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDM---NWYRAELDGKEGLIPSNYIE 54
           A+ +FNA  + ++S  +  ++ ++  +D M   N +  +    +G + S++++
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLK 74

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 134 HRTASVSRSQDVKLRDMV--PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH 191
           H +      + + + +++        +AL+D    +  EL F+ GDVI V D +++ WW 
Sbjct: 8   HYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWW 67

Query: 192 GEIGARKGLFPATYILNMEDDMNWYRAE 219
           G +   +G FPA+++    +       +
Sbjct: 68  GRVADGEGWFPASFVRLRVNQDEPADDD 95

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH 58
          A A  D     + EL F+   V+++++  +   W+   +   EG  P++++ ++ +
Sbjct: 33 AEALWDHVTMDDQELGFKAGDVIEVMDATNR-EWWWGRVADGEGWFPASFVRLRVN 87

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 23/85 (27%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
             + +  ++ D+   E     F+ G  + V +R+   WW+ +I                 
Sbjct: 8   NLKDVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQI----------------- 49

Query: 212 DMNWYRAELDGKEGLIPSNYIEMKN 236
                   +   +G +PSNY+E KN
Sbjct: 50  -----LDGVKPFKGWVPSNYLEKKN 69

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL----DGKEGLIPSNYIEMKN 57
          ++  D+    E+   F++   +++L    +  W+  ++       +G +PSNY+E KN
Sbjct: 14 VSIADYEGD-EETAGFQEGVSMEVLERNPN-GWWYCQILDGVKPFKGWVPSNYLEKKN 69

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 62.1 bits (150), Expect = 3e-12
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 43  GKEGLIPSNYIEMKNHD--WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVK 99
           G  G + +     +  +    + +++R +A+ LL      G  L+R S       S++ +
Sbjct: 4   GSSGEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTR 63

Query: 100 ----CSDGVQHFKVLRDSSGKFFLWV---VKFNSLNELVEYHRTAS 138
                +  V+H+KV R+   K+ + V       SL+ +V Y  + +
Sbjct: 64  QMHNGTHVVRHYKVKRE-GPKYVIDVEQPFSCTSLDAVVNYFVSHT 108

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens} Length = 118

 Score = 62.1 bits (150), Expect = 3e-12
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 222 GKEGLIPSNYIEMKNHD--WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVK 278
           G  G + +     +  +    + +++R +A+ LL      G  L+R S       S++ +
Sbjct: 4   GSSGEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTR 63

Query: 279 ----CSDGVQHFKVLRDSSGKFFLWV---VKFNSLNELVEYHRTAS 317
                +  V+H+KV R+   K+ + V       SL+ +V Y  + +
Sbjct: 64  QMHNGTHVVRHYKVKRE-GPKYVIDVEQPFSCTSLDAVVNYFVSHT 108

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 60.9 bits (147), Expect = 8e-12
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 59  DWYYGRITRADAERLL------SNKHEGAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLR 111
             +       + ERL           +G + IR S +  G   +    +   V+++++  
Sbjct: 18  SVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFE 77

Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR 148
             S  +    V F S+  +VE++ T  +   Q + LR
Sbjct: 78  KDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLR 114

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 60.9 bits (147), Expect = 8e-12
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 238 DWYYGRITRADAERLL------SNKHEGAFLIRVSESSPGDFSLSVKCSDG-VQHFKVLR 290
             +       + ERL           +G + IR S +  G   +    +   V+++++  
Sbjct: 18  SVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFE 77

Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLR 327
             S  +    V F S+  +VE++ T  +   Q + LR
Sbjct: 78  KDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLR 114

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 126 SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVT--- 182
            +              S   +L         VQA +D+T  +  EL+ + GDV+ V    
Sbjct: 114 VVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQ 173

Query: 183 --DRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE 233
             +  D+ W  G                 E D N ++ +L+   G+ P N+ E
Sbjct: 174 NPEEQDEGWLMGVK---------------ESDWNQHK-KLEKCRGVFPENFTE 210

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 45.5 bits (106), Expect = 8e-06
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 3   AIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYR----------AELDGKEGLI 48
             A+HD+ AT  DEL  +   V+ ++  ++    D  W             +L+   G+ 
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVF 204

Query: 49  PSNYIE 54
           P N+ E
Sbjct: 205 PENFTE 210

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMN 214
           C V  +YD+T Q   EL F +G +I V ++ D  WW GE+  + GLFP+ Y+    D   
Sbjct: 3   CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP 62

Query: 215 W 215
            
Sbjct: 63  S 63

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
           + I  +D+ A  +DEL+F K Q++ +LN ED  +W++ E+ G+ GL PSNY+++    
Sbjct: 3  CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDP-DWWKGEVSGQVGLFPSNYVKLTTDM 60

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 58.1 bits (140), Expect = 5e-11
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVT---DRSDQHWWHGEIG--------ARKGLFPA 203
            +  AL D+   +   L   RG V+ V        + +W G +         AR G FP+
Sbjct: 23  SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 82

Query: 204 TYI 206
           + +
Sbjct: 83  SIV 85

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDG--------KEGLIPSNY 52
          A+A  D+ A     L+  + QV+ + +        ++   + G        + G  PS+ 
Sbjct: 25 AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSI 84

Query: 53 IE 54
          + 
Sbjct: 85 VR 86

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 25/78 (32%)

Query: 157 VQALYDFTP-QEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           V+A+  +T   +  E+ F +GD+  V +  +  W                         W
Sbjct: 8   VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWM------------------------W 43

Query: 216 YRAELDGKEGLIPSNYIE 233
                  ++GLI  + +E
Sbjct: 44  VTNLRTDEQGLIVEDLVE 61

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 5  AKHDFNATAE-DELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNYIE 54
          A   +    + DE+SF K  +  + N  +D  W         ++GLI  + +E
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELED-GWMWVTNLRTDEQGLIVEDLVE 61

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYIL 207
             +E    A+Y+F      +L  + GDV+ + +     W+ G +      +G+FP ++I 
Sbjct: 14  ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 72

Query: 208 NMEDDMN 214
             E  + 
Sbjct: 73  IKEVTVE 79

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMK 56
           +A ++F  +   +LS +   V++I   E   +WYR  L      +G+ P ++I +K
Sbjct: 20 GVAIYNFQGSGAPQLSLQIGDVVRIQ--ETCGDWYRGYLIKHKMLQGIFPKSFIHIK 74

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 61  YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 120
           ++G I+R  A++LL    EG++LIR S+  PG ++L+++     ++F++  D  GK F+ 
Sbjct: 54  FHGMISREAADQLLI-VAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYD--GKHFVG 110

Query: 121 VVKFNSLNELV 131
             +F S+++LV
Sbjct: 111 EKRFESIHDLV 121

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 3/71 (4%)

Query: 240 YYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW 299
           ++G I+R  A++LL    EG++LIR S+  PG ++L+++     ++F++  D  GK F+ 
Sbjct: 54  FHGMISREAADQLLI-VAEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYYD--GKHFVG 110

Query: 300 VVKFNSLNELV 310
             +F S+++LV
Sbjct: 111 EKRFESIHDLV 121

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 59.0 bits (141), Expect = 8e-10
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 133 YHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWH 191
           +  T +   S           E  V+ALYD+  QE  EL F+ GD +T  +  D Q W  
Sbjct: 407 FSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCK 466

Query: 192 GEIGA-RKGLFPATYI 206
           G +   + GL+PA Y+
Sbjct: 467 GRLDNGQVGLYPANYV 482

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIE 54
           A +D+     DELSF+    L  +  ED+  W +  L +G+ GL P+NY+E
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVE 483

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 13/86 (15%)

Query: 150 MVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           M  E    +ALYD+  +   +++   GD++TV   S       +    +           
Sbjct: 1   MSAEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAR----------- 49

Query: 210 EDDMNWY--RAELDGKEGLIPSNYIE 233
            +++ W     E  G+ G  P  Y+E
Sbjct: 50  PEEIGWLNGYNETTGERGDFPGTYVE 75

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus} Length = 82

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKIL-NMEDDMNWYRAEL----DGKEGLIPSNYIEMKN 57
          +   DF+A    ELS +  Q +++L    +   W           +EGL+PS+ + + +
Sbjct: 21 VVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCISH 79

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus} Length = 82

 Score = 40.0 bits (93), Expect = 7e-05
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 24/83 (28%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNMEDDM 213
           L   L DF+     EL  + G  + + +R      W       R                
Sbjct: 19  LTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERS--------------- 63

Query: 214 NWYRAELDGKEGLIPSNYIEMKN 236
                    +EGL+PS+ + + +
Sbjct: 64  -------PPQEGLVPSSTLCISH 79

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 137 ASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTD-RSDQHWWHGEIG 195
           A   +  ++ L  M   +     +        G L    GD++ +T   ++ +WW G   
Sbjct: 2   AQDKKRNELGLPKMEVFQEYY-GIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNT 60

Query: 196 A--RKGLFPATYI 206
           A    G FP   +
Sbjct: 61  ATNEVGWFPCNRV 73

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 23/136 (16%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
           ++  ++  P  P  L F RGDV  V D                                +
Sbjct: 7   IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQS-----------------HARGGHW 49

Query: 217 RAELDGKE------GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSP 270
            A   G++      G+IP+     +       +          +  +  A   R+     
Sbjct: 50  LAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRR 109

Query: 271 GDFSLSVKCSDGVQHF 286
           G    + +  + +   
Sbjct: 110 GAKKTTQRSREDLSAL 125

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 50.7 bits (120), Expect = 4e-07
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 55  MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD---GVQHFKVLR 111
           +      YG + R +    L N+  G F+IR SE +PG F ++    +    ++H+ V  
Sbjct: 348 LWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQP 407

Query: 112 DSSG 115
           + + 
Sbjct: 408 NDTA 411

>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A* Length = 473

 Score = 50.7 bits (120), Expect = 4e-07
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSD---GVQHFKVLR 290
           +      YG + R +    L N+  G F+IR SE +PG F ++    +    ++H+ V  
Sbjct: 348 LWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQP 407

Query: 291 DSSG 294
           + + 
Sbjct: 408 NDTA 411

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 45.3 bits (107), Expect = 8e-07
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 161 YDFTPQEPG----ELEFRRGDVITVTDRS-DQHWWHGEIGA--RKGLFPATYI 206
           Y   P  PG     L    GD++ +T    + +WW G   A    G FP   +
Sbjct: 13  YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 6/64 (9%)

Query: 1  MEAIAKHDFNATAE----DELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
          ME   ++             L      ++++   E + NW+        + G  P N + 
Sbjct: 7  MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

Query: 55 MKNH 58
             H
Sbjct: 67 PYVH 70

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae} Length = 178

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 48  IPSNYIEMKNHDWYYGRITRADAERLLSNKHEG--AFLIRVSESSPGDFSLSVKCSDGVQ 105
           I  N   +K H  Y+   +  DAE+LLS+       +    S   PG  + +      ++
Sbjct: 91  ILRNLKSIKAHAKYFN--SPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYNNGSILE 148

Query: 106 HFKVLRDSSGKFFLWVVKFNSLNELVEY 133
            +  + D           F  ++  V Y
Sbjct: 149 EYIGVSDM---LTYNNSTFKDIDSFVAY 173

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae} Length = 178

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEG--AFLIRVSESSPGDFSLSVKCSDGVQ 284
           I  N   +K H  Y+   +  DAE+LLS+       +    S   PG  + +      ++
Sbjct: 91  ILRNLKSIKAHAKYFN--SPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYNNGSILE 148

Query: 285 HFKVLRDSSGKFFLWVVKFNSLNELVEY 312
            +  + D           F  ++  V Y
Sbjct: 149 EYIGVSDM---LTYNNSTFKDIDSFVAY 173

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus} Length = 585

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 36  WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFS 95
           W+   ++    ++  ++    N     G + +  A  LL NK +G FL+R S+S  G  +
Sbjct: 446 WFDGVME----VLKKHHKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGIT 501

Query: 96  LSVKCSDGVQHFK 108
           ++ K     ++  
Sbjct: 502 IAWKFDSPDRNLW 514

>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus} Length = 585

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 215 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFS 274
           W+   ++    ++  ++    N     G + +  A  LL NK +G FL+R S+S  G  +
Sbjct: 446 WFDGVME----VLKKHHKPHWNDGAILGFVNKQQAHDLLINKPDGTFLLRFSDSEIGGIT 501

Query: 275 LSVKCSDGVQHFK 287
           ++ K     ++  
Sbjct: 502 IAWKFDSPDRNLW 514

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 127 LNELVEYHRTASVSRSQDVKLRDMVPEECL--VQALYDFTPQEPGELEFRRGDVITVTDR 184
             E+++     + +    +        +      A+Y   P+   E+    GD+I V   
Sbjct: 413 AYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGN 472

Query: 185 SDQHWWHGEI--GARKGLFPATY 205
               +  G      R GL+P+  
Sbjct: 473 HWDGYSKGVNRKLGRTGLYPSYK 495

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 62/402 (15%), Positives = 119/402 (29%), Gaps = 145/402 (36%)

Query: 8   DFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITR 67
           DF  T E +  ++   +L +   ED    +    D K        ++    D     +++
Sbjct: 8   DFE-TGEHQYQYKD--ILSVF--EDA---FVDNFDCK-------DVQ----DMPKSILSK 48

Query: 68  ADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF-----------------KVL 110
            + + ++ +K   +  +R+  +      L  K  + VQ F                    
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWT------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDV-KLRDMVPEECLVQALYDFTPQEPG 169
           R  S    +++ + + L    +     +VSR Q   KLR         QAL         
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---------QALL-------- 145

Query: 170 ELEFRRGDVITVTDRSDQHWWHGEIGARK------GLFPATYILNMEDDMNW-------- 215
             E R    + +          G +G+ K                M+  + W        
Sbjct: 146 --ELRPAKNVLI---------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 216 ------------YRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFL 262
                       Y+ + +       S+ I+++ H        +A+  RLL +K +E   L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI------QAELRRLLKSKPYENCLL 248

Query: 263 I--RVSESSPGDFSLSVKCSDGVQHFKVL---RDSSGKFFLWVVKFNSLNELVEYHRTAS 317
           +   V  +   + + ++ C       K+L   R         V   + L+     H +  
Sbjct: 249 VLLNVQNAKAWN-AFNLSC-------KILLTTRFKQ------VT--DFLSAATTTHIS-- 290

Query: 318 VSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIK 359
                            L       TP E   L   + L  +
Sbjct: 291 -----------------LDHHSMTLTPDEVKSL-LLKYLDCR 314

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 Length = 575

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 36  WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDF 94
           W  + L+    LI  + + + N     G I++     LL ++  G FL+R SESS  G  
Sbjct: 422 WIESILE----LIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAI 477

Query: 95  SLSVKCSDGVQHFK 108
           + +           
Sbjct: 478 TFTWVERSQNGGEP 491

>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 Length = 575

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 215 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDF 273
           W  + L+    LI  + + + N     G I++     LL ++  G FL+R SESS  G  
Sbjct: 422 WIESILE----LIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAI 477

Query: 274 SLSVKCSDGVQHFK 287
           + +           
Sbjct: 478 TFTWVERSQNGGEP 491

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 157 VQALYDFTPQE-----PGELEFRRGDVITVTDRSDQHWW 190
           ++AL+D+   +        L FR GDV+ V D  D+ WW
Sbjct: 4   IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWW 42

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 41  LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVK 99
           LD    L+    + + N  +  G I++     +LS K  G FL+R SESS  G  + +  
Sbjct: 439 LDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWV 498

Query: 100 CSDGVQHFKVL 110
             D     ++ 
Sbjct: 499 EKDISGSTQIQ 509

>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVK 278
           LD    L+    + + N  +  G I++     +LS K  G FL+R SESS  G  + +  
Sbjct: 439 LDNIIDLVKKYILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWV 498

Query: 279 CSDGVQHFKVL 289
             D     ++ 
Sbjct: 499 EKDISGSTQIQ 509

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 1   MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMN---WYRAELDGKEGLIPSNYIEMKN 57
           +  + +      A  +     ++  K    + +     W  + L+    LI  + + + N
Sbjct: 519 LNMLGEKLLGPNASPDGLIPWTRFCKENINDKNFPFWLWIESILE----LIKKHLLPLWN 574

Query: 58  HDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLR 111
                G I++     LL ++  G FL+R SESS  G  + +              
Sbjct: 575 DGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFH 629

>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683

 Score = 40.3 bits (93), Expect = 9e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVK 278
           ++    LI  + + + N     G I++     LL ++  G FL+R SESS  G  + +  
Sbjct: 558 IESILELIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWV 617

Query: 279 CSDGVQHFKVLR 290
                       
Sbjct: 618 ERSQNGGEPDFH 629

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 157 VQALYDFTPQEPGE-----LEFRRGDVITVTDRSDQHWW 190
           V+AL+D+ P          L F+ GD++ VT+ SD  WW
Sbjct: 8   VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWW 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	100.0
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	100.0
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	100.0
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	100.0
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	100.0
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.97
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.97
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.97
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.97
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.97
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.97
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.97
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.96
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.96
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.96
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.96
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.96
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.95
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.94
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.93
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.93
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.88
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.93
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.93
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.92
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.92
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.92
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.92
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.92
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.92
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.92
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.92
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.92
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.92
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	99.92
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.91
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.91
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.91
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.85
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.91
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.91
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.91
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.91
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.91
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.91
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	99.91
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.91
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.91
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.91
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.9
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.9
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.9
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.9
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.9
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.9
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	99.9
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	99.9
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.9
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.9
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.9
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.9
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.89
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.89
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.89
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.89
2eo3_A	111	CRK-like protein; phosphorylation, repeat, SH2 dom	99.89
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.89
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.89
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.89
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.88
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.88
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.88
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.88
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.88
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.88
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.87
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.87
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.86
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.86
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.85
2oq1_A	254	Tyrosine-protein kinase ZAP-70; tandem SH2 domains	99.83
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.83
4fbn_A	246	1-phosphatidylinositol 4,5-bisphosphate phosphodi	99.82
1a81_A	254	SYK kinase; complex (transferase-peptide), SYK, ki	99.82
1r1p_A	100	GRB2-related adaptor protein 2; SH2, GADS, phospho	99.82
3hhm_B	373	NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidil	99.79
1jyr_A	96	Growth factor receptor-bound protein 2; receptor b	99.77
3ov1_A	117	Growth factor receptor-bound protein 2; GRB2 SH2 d	99.77
2crh_A	138	VAV proto-oncogene; oncoprotein, structural genomi	99.77
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.77
2dly_A	121	FYN-related kinase; BRK family kinase, structural	99.77
2y3a_B	302	Phosphatidylinositol 3-kinase regulatory subunit;	99.76
1wqu_A	114	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.76
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.76
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.75
2hdv_A	111	SH2-B PH domain containing signaling mediator 1 ga	99.72
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.72
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.72
2cs0_A	119	Hematopoietic SH2 domain containing; ALX, FLJ14886	99.72
2cia_A	102	Cytoplasmic protein NCK2; SH2-domain, SH3 domain,	99.71
1rja_A	100	Tyrosine-protein kinase 6; human protein tyrosine	99.71
2gsb_A	119	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.7
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.7
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.7
1i3z_A	103	EWS/FLI1 activated transcript 2; SH2 domain phosph	99.7
2dlz_A	118	Protein VAV-2; RHO family guanine nucleotide excha	99.7
1d4t_A	104	T cell signal transduction molecule SAP; SH2 domai	99.7
3us4_A	98	Megakaryocyte-associated tyrosine-protein kinase;	99.69
2ecd_A	119	Tyrosine-protein kinase ABL2; SH2 domain, phosphot	99.69
1ju5_A	109	CRK; CRK, SH2, SH3, adaptor protein, phosphopeptid	99.69
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	99.69
3k2m_A	112	Proto-oncogene tyrosine-protein kinase ABL1; engin	99.69
2ysx_A	119	Signaling inositol polyphosphate phosphatase SHIP	99.68
1blj_A	114	P55 BLK protein tyrosine kinase; signal transducti	99.68
2vif_A	141	Suppressor of cytokine signalling 6; growth regula	99.68
3ps5_A	595	Tyrosine-protein phosphatase non-receptor type 6;	99.68
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.68
2lnw_A	122	VAV-2, guanine nucleotide exchange factor VAV2; si	99.68
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.67
3maz_A	125	Signal-transducing adaptor protein 1; modular doma	99.67
2b3o_A	532	Tyrosine-protein phosphatase, non-receptor type 6;	99.67
2kk6_A	116	Proto-oncogene tyrosine-protein kinase FER; method	99.67
2shp_A	525	SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin	99.67
1lkk_A	105	Human P56 tyrosine kinase; complex (tyrosine kinas	99.67
1ka6_A	128	SH2 domain protein 1A; SH2 domain, protein-peptide	99.67
3eaz_A	106	Tyrosine-protein kinase CSK; SH2, disulfide, oxidi	99.67
2iug_A	120	Phosphatidylinositol 3-kinase regulatory alpha sub	99.67
1mil_A	104	SHC adaptor protein; SH2 domain, phosphorylation,	99.66
1h9o_A	112	Phosphatidylinositol 3-kinase; transferase/recepto	99.66
2aug_A	126	Growth factor receptor-bound protein 14; phosphory	99.66
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.65
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.64
2bbu_A	164	Suppressor of cytokine signaling 3; SH2 domain, ex	99.64
2dx0_A	138	Phospholipase C, gamma 2; phosphoric diester hydro	99.64
1aot_F	106	FYN protein-tyrosine kinase; SH2 domain, signal tr	99.63
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.63
1nrv_A	105	Growth factor receptor-bound protein 10; dimer, si	99.63
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	99.63
2cr4_A	126	3BP-2, SH3 domain-binding protein 2; structural ge	99.63
3s9k_A	118	Tyrosine-protein kinase ITK/TSK; proline isomeriza	99.63
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.63
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.63
2c9w_A	169	Suppressor of cytokine signaling 2; growth regulat	99.62
2ekx_A	110	Cytoplasmic tyrosine-protein kinase BMX; SH2 domai	99.62
3tkz_A	109	Tyrosine-protein phosphatase non-receptor type 11;	99.62
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.62
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.62
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.62
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.62
2eob_A	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.61
2hmh_A	152	Suppressor of cytokine signaling 3; SOCS3, GP130,	99.61
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.61
3pqz_A	117	Growth factor receptor-bound protein 7; SH2, binds	99.61
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.61
2el8_A	118	Signal-transducing adaptor protein 2; SH2 domain,	99.61
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.61
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.61
2kno_A	131	Tensin-like C1 domain-containing phosphatase; SH2	99.61
2eo6_A	141	B-cell linker protein; SH2, cytoplasmic adapter pr	99.61
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.6
2ge9_A	125	Tyrosine-protein kinase BTK; SH2 domain, structure	99.6
2dm0_A	125	Tyrosine-protein kinase TXK; TEC family kinase, st	99.6
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.6
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.6
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.59
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.59
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.59
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.59
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.59
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.59
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.59
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.59
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.59
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.59
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.58
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.58
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.58
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.58
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.58
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.58
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.58
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.58
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.58
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.58
2izv_A	187	Suppressor of cytokine signaling 4; signal transdu	99.58
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.58
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.57
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.57
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.57
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.57
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.57
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.57
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.57
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.57
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.57
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.57
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.57
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.57
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.57
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.57
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.57
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.57
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.56
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.56
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.56
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.56
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.56
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.56
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.56
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.56
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.56
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.56
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.56
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.56
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.55
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.55
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.55
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.55
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.55
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.55
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.55
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.55
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.55
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.55
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.55
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.55
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.55
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.54
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.54
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.54
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.54
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.54
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.54
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.54
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.54
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.54
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.54
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.54
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.54
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.54
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.54
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.53
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.53
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.53
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.53
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.53
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.53
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.53
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.53
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.53
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.53
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.53
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.52
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.52
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.52
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.52
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.52
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.52
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.52
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.52
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.52
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.52
3u23_A	65	CD2-associated protein; structural genomics, struc	99.52
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.52
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.52
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.52
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.52
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.52
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.52
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.52
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.51
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.51
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.51
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.51
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.51
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.51
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.5
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.5
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.5
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.5
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.5
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.5
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.5
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.5
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.5
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.5
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.49
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.49
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.49
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.49
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.49
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.49
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.49
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.49
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.48
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.48
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.47
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.47
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.47
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.47
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.46
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.46
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.45
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.45
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.45
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.45
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.45
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.45
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.45
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.44
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.44
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.44
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.43
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.43
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.43
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.43
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.42
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.42
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.42
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.42
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.42
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.42
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.41
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.41
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.41
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.41
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.4
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.4
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.4
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.4
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.4
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.4
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.39
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.39
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.39
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.39
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.39
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.38
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.38
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.38
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.38
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.38
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.38
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.38
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.37
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.37
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.37
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.37
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.37
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.37
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.37
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.37
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.37
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.36
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.36
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.36
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.36
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.36
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.36
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.36
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.36
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.36
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.36
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.36
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.36
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.36
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.35
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.35
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.35
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.35
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.35
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.35
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.35
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.35
3u23_A	65	CD2-associated protein; structural genomics, struc	99.35
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.35
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.34
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.34
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.34
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.34
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.34
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.34
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.34
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.34
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.34
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.34
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.33
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.33
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.33
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.33
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.33
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.33
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.33
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.33
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.33
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.33
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.33
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.33
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.33
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.33
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.33
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.32
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.32
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.32
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.32
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.32
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.32
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.32
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.32
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.32
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.32
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.32
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.31
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.31
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.31
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.31
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.31
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.31
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.31
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.31
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.31
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.3
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.3
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.3
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.3
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.3
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.3
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.3
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.3
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.3
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.3
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.3
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.3
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.29
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.29
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.29
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.29
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.29
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.29
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.29
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.29
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.29
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.29
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.29
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.29
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.29
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.28
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.28
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.28
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.27
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.27
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.27
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.26
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.26
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.26
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.25
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.25
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.25
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.25
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.25
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.25
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.24
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.24
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.23
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.23
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.23
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.23
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.22
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.21
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.21
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.2
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.2
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.2
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.18
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.18
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.18
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.17
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	99.17
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.15
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.14
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.14
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.14
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.14
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.13
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.13
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.12
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	99.11
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.1
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.09
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.09
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.09
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.07
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.05
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.02

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=100.00  E-value=1.6e-44  Score=313.55  Aligned_cols=211  Identities=63%  Similarity=1.102  Sum_probs=188.5

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhc-CCCC
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHE   79 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~-~~~~   79 (376)
                      |+|+|+|||+++.++||+|++||+|.|+++.++++||.++.+|++||||+|||++...+||||.|+|.+|+.+|. ..++
T Consensus         1 m~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~~~w~~g~isr~~ae~lL~~~~~~   80 (217)
T 1gri_A            1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHD   80 (217)
T ss_dssp             CEEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCCCSSBCTTCCHHHHHHHHHTCSST
T ss_pred             CEEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCcccccccchhhcccCCHHHHHHHHhccCCC
Confidence            899999999999999999999999999997556789999999999999999999999999999999999999994 4899


Q ss_pred             ccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccccccccccCCCc---hhhh
Q psy10189         80 GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP---EECL  156 (376)
Q Consensus        80 G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~---~~~~  156 (376)
                      |+||+|.|.+.++.|+||+..++.++|++|....+|.|++....|.++.+||++|+..++.......+..+.|   ....
T Consensus        81 G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~~~~~~~~~l~~~~~~~~~~~~  160 (217)
T 1gri_A           81 GAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTY  160 (217)
T ss_dssp             TCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSCSSSSTTCCCCBCCCCCCCCCE
T ss_pred             ceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccccccccceeecccccCCCCceE
Confidence            9999999999999999999999999999999999999999977899999999999998877655444433322   3467


Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.+|+.|+||++||++++.
T Consensus       161 ~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             EEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECCC
Confidence            8999999999999999999999999999999999999999999999999998754

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=100.00  E-value=1.4e-37  Score=272.17  Aligned_cols=197  Identities=31%  Similarity=0.555  Sum_probs=160.3

Q ss_pred             ccccccccC-----CHHHHHHHhc------CCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC---cEEEece
Q psy10189         57 NHDWYYGRI-----TRADAERLLS------NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---KFFLWVV  122 (376)
Q Consensus        57 ~~~w~~g~i-----sr~~ae~~l~------~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~---~~~~~~~  122 (376)
                      +++||||.|     +|.+||++|.      +.++|+||||+|++.+|+|+||+..++.++|++|....++   .|++.+.
T Consensus         3 ~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~   82 (246)
T 4fbn_A            3 NEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDN   82 (246)
T ss_dssp             CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEECGGGCCEEEEETT
T ss_pred             CCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEECCEEEEEEEEEECCCCceeEEecCC
Confidence            578999999     7999999996      4789999999999999999999999999999999876554   4676654


Q ss_pred             -eecchhhhHhhhhcccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeee
Q psy10189        123 -KFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLF  201 (376)
Q Consensus       123 -~f~sl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~  201 (376)
                       .|.||.+||+||+..++...                           ++...      +                    
T Consensus        83 ~~F~sl~~LV~~y~~~~l~~~---------------------------~~~~~------l--------------------  109 (246)
T 4fbn_A           83 LVFDSLYDLITHYQQVPLRCN---------------------------EFEMR------L--------------------  109 (246)
T ss_dssp             EEESSHHHHHHHHHHSCEECS---------------------------SCEEC------C--------------------
T ss_pred             cccCCHHHHHHhHhhcccccc---------------------------ccccc------c--------------------
Confidence             59999999999988664210                           00000      0                    


Q ss_pred             ecccccccccCcchhhhccCCCCCCccccccccccccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEeC
Q psy10189        202 PATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCS  280 (376)
Q Consensus       202 P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~~  280 (376)
                          ..+..                   ....++.++||||.|+|.+||++|.+. .+|+||||.| +.++.|+||++.+
T Consensus       110 ----~~p~p-------------------~~~~~~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~s-~~~g~y~Lsv~~~  165 (246)
T 4fbn_A          110 ----SEPVP-------------------QTNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAE  165 (246)
T ss_dssp             ----CCBCC-------------------CSCGGGGSTTEESSCCHHHHHHHHHTSCCTTEEEEEEC-SSTTEEEEEEEET
T ss_pred             ----ccccc-------------------ccCCcccCCeeecCccHHHHHHHHhhCCCCCeEEEEec-CCCCCEEEEEEeC
Confidence                00000                   001167889999999999999999764 5899999998 5789999999999


Q ss_pred             CeeEEEEEEEcCCCcEEEeccccCCHHHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        281 DGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       281 ~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      +.|+||+|..+ ++.|.+++..|+||.+||+||+++++.+  .+.|++|+++.
T Consensus       166 ~~v~H~~I~~~-~~~~~~~~~~F~sL~~Lv~~y~~~p~~~--~~~L~~Pv~~~  215 (246)
T 4fbn_A          166 GKIKHCRVQQE-GQTVMLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEE  215 (246)
T ss_dssp             TEEEEEEEEEE-TTEEEETTEEESCHHHHHHHHHHSCSBT--TBCCCEECSHH
T ss_pred             CCeEEEEEEeC-CCEEEeCCCccCCHHHHHHHhCcCCCCC--CcCCCCcCCCc
Confidence            99999999865 4567777889999999999999999987  78899999764

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=100.00  E-value=3.5e-36  Score=265.86  Aligned_cols=242  Identities=25%  Similarity=0.394  Sum_probs=172.9

Q ss_pred             cccccccccCCHHHHHHHhc--CCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHh
Q psy10189         56 KNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVE  132 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~--~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~  132 (376)
                      ...+||||.|+|++|+.+|.  +..+|+||||.|.+.++.|+||+..++.++|++|....+|.|++.+ ..|.|+.+||+
T Consensus         4 ~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~   83 (254)
T 2oq1_A            4 AHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCE   83 (254)
T ss_dssp             TTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             ccCCccCCCCCHHHHHHHHhccCCCCcEEEEEeCCCCCCCEEEEEEECCeEEEEEEEEeCCCCEEeCCCCccCCHHHHHH
Confidence            45789999999999999995  4689999999999999999999999999999999998888999975 45999999999


Q ss_pred             hhhcccccccccccccCCCchhhhhhhc-ccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeee-ccccccc
Q psy10189        133 YHRTASVSRSQDVKLRDMVPEECLVQAL-YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFP-ATYILNM  209 (376)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~al-~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P-~~~v~~~  209 (376)
                      ||+..+....  ..+..|.+........ -.|...  .+..+..  .  |     ..+|.... ....+... ...++..
T Consensus        84 ~y~~~~~~l~--~~L~~p~~~~~~~~~~~~~f~~i--~~~~l~~--~--v-----~~~w~~~~~~~~~~~~~~~p~~~~~  150 (254)
T 2oq1_A           84 FYSRDPDGLP--CNLRKPCNRPSGLEPQPGVFDCL--RDAMVRD--Y--V-----RQTWKLEGEALEQAIISQAPQVEKL  150 (254)
T ss_dssp             HHHHCCTTSS--SCCCSBCCCCTTCCCBCCHHHHH--HHHHHHH--H--H-----HHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcc--cccccccCCCCCCCCCcccccch--hHHHHHH--H--H-----HHHHhhcchhhhhhhccCCcccccc
Confidence            9998765432  2333332211000000 000000  0000000  0  0     11332210 00011000 0000000


Q ss_pred             ccCcchhhhccCCCCCCccccccccccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEE
Q psy10189        210 EDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFK  287 (376)
Q Consensus       210 ~~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~  287 (376)
                                       .  ....++.++||||.|+|++||++|..  .++|+||||+| +.++.|+|||+.++.|+||+
T Consensus       151 -----------------~--~~~~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~  210 (254)
T 2oq1_A          151 -----------------I--ATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYL  210 (254)
T ss_dssp             -----------------H--HHHGGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEEC-SSTTEEEEEEEETTEEEEEE
T ss_pred             -----------------c--cccccCCCcccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEE
Confidence                             0  01126778999999999999999985  38999999999 88999999999999999999


Q ss_pred             EEEcCCCcEEEe-ccccCCHHHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        288 VLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       288 I~~~~~~~~~~~-~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      |..+.+|.|++. ...|+||.+||+||+.++.++  .++|+.|+|+
T Consensus       211 I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~~l--~~~L~~p~~r  254 (254)
T 2oq1_A          211 ISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGL--IYCLKEACPN  254 (254)
T ss_dssp             EEECTTSCEESTTSCCBSSHHHHHHHHHHCCTTS--SSCCCSBCCC
T ss_pred             EEEcCCCCEEECCCceECCHHHHHHHHHhCCCCC--CeeCCccCcC
Confidence            998888999987 699999999999999999877  7789999864

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=100.00  E-value=8.8e-36  Score=263.29  Aligned_cols=243  Identities=24%  Similarity=0.361  Sum_probs=172.1

Q ss_pred             cccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHh
Q psy10189         56 KNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVE  132 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~  132 (376)
                      ...+||||.|+|++|+++|..  .++|+||||+|.+.++.|+||+..++.++|++|....+|.|.+.+ ..|.|+.+||+
T Consensus         3 ~~~~Wy~g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLv~   82 (254)
T 1a81_A            3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCH   82 (254)
T ss_dssp             TSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             ccCccccCCCCHHHHHHHHhcCCCCCcEEEEEecCCCCCCEEEEEEECCeeEEEEEEEcCCCCEEeCCCCCcCCHHHHHH
Confidence            357899999999999999964  589999999999999999999999999999999988888899975 45999999999


Q ss_pred             hhhcccccccccccccCCCchhhhhhhc-ccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeecccccccc
Q psy10189        133 YHRTASVSRSQDVKLRDMVPEECLVQAL-YDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNME  210 (376)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~al-~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~  210 (376)
                      ||+.++....  ..+..|.+........ -.|....  +..+..        .. ..+|.... ....+...   ..|. 
T Consensus        83 ~y~~~~~~l~--~~L~~p~~~~~~~~~~~~~~~~i~--~~~l~~--------~v-~~~w~~~~~~l~~~~~~---~~p~-  145 (254)
T 1a81_A           83 YHSQESDGLV--CLLKKPFNRPQGVQPKTGPFEDLK--ENLIRE--------YV-KQTWNLQGQALEQAIIS---QKPQ-  145 (254)
T ss_dssp             HHTTCCTTSS--SCCCEECCCCSSCCCCCCSSHHHH--HHHHHH--------HH-HHHTCCCHHHHHHHHHH---HHHH-
T ss_pred             HHHhCCCCce--ECCccccCCCCCCCCccchhcchH--HHHHHH--------HH-HHHHHhccchhhhhccc---CCch-
Confidence            9998764432  2222222111000000 0000000  000000        00 11232110 00000000   0000 


Q ss_pred             cCcchhhhccCCCCCCccccccccccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEEE
Q psy10189        211 DDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKV  288 (376)
Q Consensus       211 ~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I  288 (376)
                                  .+-..  .-..++.++||||.|+|++||++|..  .++|+||||+| +.+|.|+|||+.++.|+||+|
T Consensus       146 ------------~~~~~--~~~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I  210 (254)
T 1a81_A          146 ------------LEKLI--ATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVLHYRI  210 (254)
T ss_dssp             ------------HHHHH--HHTSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEEC-SSSSCEEEEEEETTEEEEEEE
T ss_pred             ------------hhhcc--cccccccCCccccCCCHHHHHHHHHhcCCCCceEEEEec-CCCCCEEEEEEECCEEEEEEE
Confidence                        00000  01126788999999999999999985  48999999999 889999999999999999999


Q ss_pred             EEcCCCcEEEe-ccccCCHHHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        289 LRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       289 ~~~~~~~~~~~-~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ..+++|.|++. ...|+||.+||+||+.++.++  .+.|+.|+++
T Consensus       211 ~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~~l--~~~L~~p~~r  253 (254)
T 1a81_A          211 DKDKTGKLSIPEGKKFDTLWQLVEHYSYKADGL--LRVLTVPCQK  253 (254)
T ss_dssp             EECTTSCEECTTSCCBSCHHHHHHHHTTCCTTS--SSCCCCBCCC
T ss_pred             EEcCCCCEEecCCcccCCHHHHHHHHHHCCCCC--CeecCCcCCC
Confidence            98888999986 699999999999999999876  6789999875

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=100.00  E-value=1.5e-35  Score=247.57  Aligned_cols=153  Identities=31%  Similarity=0.622  Sum_probs=138.5

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccccCcchhhhccCCCCCCccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNY  231 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~  231 (376)
                      ...++|+|||.++.++||+|++||++.|++. +++||.++.  +|+.|+||++||.+...                    
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~--------------------   70 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANS--------------------   70 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTC--------------------
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccccc--------------------
Confidence            3579999999999999999999999999998 689999997  89999999999998644                    


Q ss_pred             cccccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEec-ccc
Q psy10189        232 IEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWV-VKF  303 (376)
Q Consensus       232 ~~~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~~-~~f  303 (376)
                        ++.++||||.|+|.+|+++|..  .++|+||||+|++.++.|+|||+.     ++.|+||+|....+|.|++.+ ..|
T Consensus        71 --l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~F  148 (175)
T 4d8k_A           71 --LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITF  148 (175)
T ss_dssp             --STTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSEE
T ss_pred             --ccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCcc
Confidence              5678999999999999999964  579999999999899999999998     789999999988888899885 899


Q ss_pred             CCHHHHHHHHhhCCcCCcceeeeCCCCC
Q psy10189        304 NSLNELVEYHRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       304 ~sl~~lv~~y~~~~~~~~~~~~L~~p~~  331 (376)
                      +||.+||+||+.++..+  .++|+.|.+
T Consensus       149 ~sl~~LV~~y~~~~~gl--~~~L~~Pc~  174 (175)
T 4d8k_A          149 PGLHELVRHYTNASDGL--CTRLSRPCQ  174 (175)
T ss_dssp             SSHHHHHHHHHHCCTTS--SSCCCSBCC
T ss_pred             CCHHHHHHHHhhCCCCC--cccCCCcCC
Confidence            99999999999998877  777888865

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=100.00  E-value=3.4e-35  Score=254.74  Aligned_cols=179  Identities=55%  Similarity=0.966  Sum_probs=156.7

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeeeCCeeeeeecccccccccCcchhhhccCCCCCCcccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEM  234 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~~  234 (376)
                      .++|+|+|.++.++||+|++||++.|+.+. +++||.++.+|+.|+||++||+..                         
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~-------------------------   56 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK-------------------------   56 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECC-------------------------
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCcccccc-------------------------
Confidence            478999999999999999999999999876 678999999999999999999753                         


Q ss_pred             ccccccccccChHHHHHhh-cCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHH
Q psy10189        235 KNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  313 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L-~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y  313 (376)
                       ..+||||.|+|.+|+.+| ...++|+||||.|.+.++.|+||++.++.|+||+|....+|.|++....|+|+.+||+||
T Consensus        57 -~~~w~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~  135 (217)
T 1gri_A           57 -PHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYH  135 (217)
T ss_dssp             -CCSSBCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHH
T ss_pred             -cchhhcccCCHHHHHHHHhccCCCceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhh
Confidence             348999999999999999 467899999999999999999999999999999999998999999999999999999999


Q ss_pred             hhCCcCCcceeeeCCCCC---ccceEEEeccCCCCCCCCccccccceeee
Q psy10189        314 RTASVSRSQDVKLRDMVP---EECLVQALYDFTPQEPGELEFRRDLKIKR  360 (376)
Q Consensus       314 ~~~~~~~~~~~~L~~p~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  360 (376)
                      +.+++.....+.|+.+.|   ....++|+|+|.+.+.+||+|++|++|.-
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~y~~~~~~eL~~~~Gd~i~v  185 (217)
T 1gri_A          136 RSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHV  185 (217)
T ss_dssp             HHSCSSSSTTCCCCBCCCCCCCCCEEEESSCCCCSSTTBCCCCTTCEEEE
T ss_pred             hccccccccceeecccccCCCCceEEEecCCccCCCCCcCCCCCCCEEEE
Confidence            999888765555555433   34678999999999999999999988865

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=9.2e-35  Score=290.12  Aligned_cols=241  Identities=23%  Similarity=0.348  Sum_probs=172.5

Q ss_pred             ccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhH
Q psy10189         55 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELV  131 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li  131 (376)
                      +...+||||.|+|.+|+++|..  .++|+||||+|.+.+|.|+||+..++.++|++|....+|.|++.+. .|.|+.+||
T Consensus        10 l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~v~h~~i~~~~~g~~~~~~~~~f~sl~~Lv   89 (635)
T 4fl3_A           10 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLC   89 (635)
T ss_dssp             CTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTEEEEEEEEECTTSCEESTTCCCBSSHHHHH
T ss_pred             hhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCEEEeEEEEEcCCCCEEeCCCCccCCHHHHH
Confidence            4578899999999999999976  5699999999999999999999999999999999988899999655 599999999


Q ss_pred             hhhhcccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC-----Ceeeeeecccc
Q psy10189        132 EYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-----ARKGLFPATYI  206 (376)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-----~~~G~~P~~~v  206 (376)
                      +||+.++...  ...+..|.++....      .+.....-.+..+.        -...|.+...     ...++......
T Consensus        90 ~~y~~~~~~l--~~~L~~p~~~~~~~------~~~~~~~~~~~~~~--------~~e~~~~~~~~~~~~~e~~i~~~~~~  153 (635)
T 4fl3_A           90 HYHSQESDGL--VCLLKKPFNRPQGV------QPKTGPFEDLKENL--------IREYVKQTWNLQGQALEQAIISQKPQ  153 (635)
T ss_dssp             HHHTTCCTTS--SSCCCEECCCCTTC------CCBCSHHHHHHHHH--------HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCCC--eeccCCcCCCccCC------CCCCCCcchhhhHH--------HHHHHHHHHhcccchhhhhccCCCch
Confidence            9999887443  22233332211000      00000000000000        0001111000     00000000000


Q ss_pred             cccccCcchhhhccCCCCCCccccccccccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeE
Q psy10189        207 LNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQ  284 (376)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~  284 (376)
                                      .+-++  ....++.++||||.|+|.+||++|..  +++|+||||+| +.+|.|+|||+.++.|+
T Consensus       154 ----------------~~~~~--~~~~~~~~~Wy~g~isr~~ae~~L~~~~~~~G~FLvR~s-~~~g~y~lsv~~~~~v~  214 (635)
T 4fl3_A          154 ----------------LEKLI--ATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRAR-DNNGSYALCLLHEGKVL  214 (635)
T ss_dssp             ----------------HHHHH--TTSCGGGSTTBCCSCCHHHHHHHHHSSSCCTTCEEEEES-SSSSCEEEEEEETTEEE
T ss_pred             ----------------hhhhh--cccccccCCceeccCCHHHHHHHHHcCCCCCceEEEEec-CCCCCEEEEEEECCEEE
Confidence                            00000  01236788999999999999999974  56999999999 68899999999999999


Q ss_pred             EEEEEEcCCCcEEEec-cccCCHHHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        285 HFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       285 h~~I~~~~~~~~~~~~-~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ||+|.++.+|.|++++ ..|+||.+||+||+.++.++  .++|++|+++
T Consensus       215 h~~i~~~~~g~~~~~~~~~F~sl~~Lv~~y~~~~~~l--~~~L~~p~~~  261 (635)
T 4fl3_A          215 HYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKADGL--LRVLTVPCQK  261 (635)
T ss_dssp             EEEEEECTTSCEESTTCCCBSSHHHHHHHHTTCCTTS--SSCCCSBCCC
T ss_pred             EEEEEECCCCCEEeCCCCccCCHHHHHHHhhhCCCCC--ccccCccCcC
Confidence            9999988899999985 89999999999999999887  6678888765

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.8e-34  Score=283.54  Aligned_cols=242  Identities=26%  Similarity=0.383  Sum_probs=168.1

Q ss_pred             ccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHhh
Q psy10189         57 NHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEY  133 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~  133 (376)
                      ..+||||.|+|.+|+.+|..  .++|+||||+|++.+|.|+||+..++.++|++|....+|.|++.+. .|.|+.+||+|
T Consensus         7 ~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~~~~~h~~i~~~~~g~~~~~~~~~f~sl~~Lv~~   86 (613)
T 2ozo_A            7 HLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEF   86 (613)
T ss_dssp             SCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHHH
T ss_pred             CCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcEEECCCCCcCCHHHHHHH
Confidence            45799999999999999954  6789999999999999999999999999999999888899998665 49999999999


Q ss_pred             hhcccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEE-ecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        134 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVT-DRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~-~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      |+.++....  ..+..|.++...      -.++..+-..+..    .++ ....+.|-..........     ..+.  +
T Consensus        87 y~~~~~~l~--~~L~~p~~~~~~------~~~~~~~~~~~~~----~l~~~~~~~~we~~~~~l~~~~-----~~~~--p  147 (613)
T 2ozo_A           87 YSRDPDGLP--CNLRKPCNRPSG------LEPQPGVFDCLRD----AMVRDYVRQTWKLEGEALEQAI-----ISQA--P  147 (613)
T ss_dssp             HTSCCTTSS--SCCCSBCCCCTT------CCCBCCHHHHHHH----HHHHHHHHHHHCCCHHHHHHHH-----HHHH--H
T ss_pred             HhhCCCCCC--ccCCccCCCCCC------CCCCccchhHHHH----HHHHHHHHHHhhcCchHHHHHh-----hcCC--C
Confidence            998875433  234443322110      0000000000000    000 000011100000000000     0000  0


Q ss_pred             cchhhhccCCCCCCccccccccccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEE
Q psy10189        213 MNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR  290 (376)
Q Consensus       213 ~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~  290 (376)
                      ..   ..      +.  .-..++.++||||.|+|++||++|.  ++++|+||||+| +.+|.|+|||+.++.|+||+|.+
T Consensus       148 ~~---~~------~~--~~~~~~~~~wyhg~i~r~~ae~~L~~~~~~~G~FLvR~s-~~~~~~~lsv~~~~~v~h~~I~~  215 (613)
T 2ozo_A          148 QV---EK------LI--ATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQ  215 (613)
T ss_dssp             HH---HH------HH--TTSCTTTSTTBCTTCCHHHHHHHHSSSCCCTTCEEEEEC-SSTTEEEEEEEETTEEEEEEEEE
T ss_pred             ch---hh------cc--cccccccCCccccCCCHHHHHHHHhhcCCCCceEEEEec-CCCCCEEEEEEECCeEEEEEEEE
Confidence            00   00      00  0012678899999999999999998  458999999999 77899999999999999999998


Q ss_pred             cCCCcEEEe-ccccCCHHHHHHHHhhCCcCCcceeeeCCCCC
Q psy10189        291 DSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       291 ~~~~~~~~~-~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~  331 (376)
                      +.+|.|++. ...|+||.+||+||+.++.++  .+.|..|.+
T Consensus       216 ~~~g~~~~~~~~~F~sl~~Lv~~y~~~~~~l--~~~L~~pC~  255 (613)
T 2ozo_A          216 DKAGKYCIPEGTKFDTLWQLVEYLKLKADGL--IYCLKEACP  255 (613)
T ss_dssp             CTTCCEECTTSCEESSHHHHHHHHHHCCTTC--SSCCCSBCC
T ss_pred             CCCCCEEECCCCCcCCHHHHHHHHhhCCCCc--eeccccccc
Confidence            888999998 689999999999999998877  455666553

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=265.07  Aligned_cols=199  Identities=34%  Similarity=0.529  Sum_probs=157.4

Q ss_pred             cccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHhhhh
Q psy10189         58 HDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHR  135 (376)
Q Consensus        58 ~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~~~  135 (376)
                      .+||||.|+|.+|+.+|.. ..+|+||||.|.+.+|+|+||+..++.++|++|... .+.|++.+ ..|.||.+||+||+
T Consensus         2 ~~Wy~g~isr~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~eLv~~y~   80 (595)
T 3ps5_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNS-GDFYDLYGGEKFATLTELVEYYT   80 (595)
T ss_dssp             CSCCCSSCCHHHHHHHHHHHCCTTCEEEEECSSSTTSEEEEEEETTEEEEEEEEEC-SSCEESSSSCCBSSHHHHHHHHH
T ss_pred             CCccCCCCCHHHHHHHHhhCCCCCEEEEeecCCCCCceEEEEEECCEEEEEEEEeC-CCcEEEecCccccchhhhhhhhc
Confidence            4799999999999999987 589999999999999999999999999999999864 45565544 45999999999998


Q ss_pred             cccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccCcch
Q psy10189        136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW  215 (376)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  215 (376)
                      ..+......                              .|..                      ++..+          
T Consensus        81 ~~~~~l~~~------------------------------~g~~----------------------i~L~~----------   98 (595)
T 3ps5_A           81 QQQGVLQDR------------------------------DGTI----------------------IHLKY----------   98 (595)
T ss_dssp             TTSSCCBCS------------------------------SCCB----------------------CCCCC----------
T ss_pred             cCccccccc------------------------------cccc----------------------ccccc----------
Confidence            876431100                              0000                      00000          


Q ss_pred             hhhccCCCCCCccccccccccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeCC---------eeEE
Q psy10189        216 YRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSD---------GVQH  285 (376)
Q Consensus       216 ~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~~---------~v~h  285 (376)
                                  |.+...+..++||||.|+|.+||++|. ...+|+||||+|++.+|.|+|||+.++         .|+|
T Consensus        99 ------------P~~~~~p~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~v~H  166 (595)
T 3ps5_A           99 ------------PLNCSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTH  166 (595)
T ss_dssp             ------------BCCCCCSCCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEESSSTTSCEEEEE
T ss_pred             ------------ccccccccccccccccCCHHHHHHHHhccCCCceEEEEecCCCCCcEEEEEEECCccccccCCCceEE
Confidence                        111112456789999999999999996 456899999999999999999999987         8999


Q ss_pred             EEEEEcCCCcEEEec-cccCCHHHHHHHHhhCCcCCc--ceeeeCCCCCc
Q psy10189        286 FKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVSRS--QDVKLRDMVPE  332 (376)
Q Consensus       286 ~~I~~~~~~~~~~~~-~~f~sl~~lv~~y~~~~~~~~--~~~~L~~p~~~  332 (376)
                      |+|.. .+|.|++.+ ..|+||.+||+||+++++...  ..+.|++|+..
T Consensus       167 ~~I~~-~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~g~~~~L~~p~~~  215 (595)
T 3ps5_A          167 IKVMC-EGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYA  215 (595)
T ss_dssp             EEEBC-GGGCBBSSSSCCBSSHHHHHHHHHHSCBCCTTSCCBCCCEECCC
T ss_pred             EEEEE-eCCEEEEcCCcCCCCHHHHHHHHhcCCccccCCcEEEeeccccc
Confidence            99976 556777774 899999999999999987664  45678887753

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.97  E-value=2.3e-31  Score=256.05  Aligned_cols=189  Identities=28%  Similarity=0.565  Sum_probs=154.7

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccccCcchhhhccCCCCCCccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE  233 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~  233 (376)
                      .++|+|+|.++.++||+|++||++.|+++.+++||.|+.  +|+.|+||+|||++...                      
T Consensus         4 ~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~----------------------   61 (452)
T 1fmk_A            4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS----------------------   61 (452)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS----------------------
T ss_pred             EEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCccccccccc----------------------
Confidence            578999999999999999999999999999999999998  89999999999998643                      


Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEe-ccccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLW-VVKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~-~~~f~s  305 (376)
                      ++.++||||.|+|++|+++|..  +++|+||||.|++.+|.|+|||+.     ++.|+||+|.+.++|.|++. ...|+|
T Consensus        62 le~~~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~~~~~~~F~S  141 (452)
T 1fmk_A           62 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNS  141 (452)
T ss_dssp             GGGSTTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEESS
T ss_pred             ccccccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCCCEEEecCcccCC
Confidence            5678999999999999999974  477999999999899999999997     56899999999888888887 589999


Q ss_pred             HHHHHHHHhhCCcCCcceeeeCCCCCccceEEEeccCCCCCCCCcccccc-ceeeeecCCCCCCcccee
Q psy10189        306 LNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD-LKIKRRKSAKTKDETTVR  373 (376)
Q Consensus       306 l~~lv~~y~~~~~~~~~~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  373 (376)
                      +.+||+||+.++...+  ..|..|.+.....     ..+.....+++..+ ..+.++||+|+||+|-.+
T Consensus       142 l~~Li~~y~~~~~~l~--~~l~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~  203 (452)
T 1fmk_A          142 LQQLVAYYSKHADGLC--HRLTTVCPTSKPQ-----TQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMG  203 (452)
T ss_dssp             HHHHHHHHTTCCTTSS--SCCCEECCCCCCC-----CSSSSTTCSBCCGGGEEEEEEEEECSSCEEEEE
T ss_pred             HHHHHHHhhhccccch--hhccccccccccc-----cCCCCccccccChhHceeeeeecCCCCeEEEEE
Confidence            9999999998877663  3344443321110     01222445666654 456669999999998643

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=2.9e-31  Score=260.33  Aligned_cols=191  Identities=27%  Similarity=0.555  Sum_probs=153.7

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccccCcchhhhccCCCCCCccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNY  231 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~  231 (376)
                      ...++|+|||.++.++||+|++||++.|+++.+++||.|+.  +|+.|+||+|||++...                    
T Consensus        85 ~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~~--------------------  144 (535)
T 2h8h_A           85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS--------------------  144 (535)
T ss_dssp             --CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETTS--------------------
T ss_pred             CcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhccccc--------------------
Confidence            35689999999999999999999999999999999999998  89999999999998643                    


Q ss_pred             cccccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEe-cccc
Q psy10189        232 IEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLW-VVKF  303 (376)
Q Consensus       232 ~~~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~-~~~f  303 (376)
                        +..++||||.|+|++|+++|..  +++|+||||.|+..+|.|+|||+.     ++.|+||+|....+|.|++. ...|
T Consensus       145 --l~~~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~i~~~~~F  222 (535)
T 2h8h_A          145 --IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQF  222 (535)
T ss_dssp             --GGGSTTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-CCSCEEEETTEEE
T ss_pred             --ccccceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcCCCcEEeeccccc
Confidence              5678999999999999999974  477999999999889999999996     56899999998778888887 5899


Q ss_pred             CCHHHHHHHHhhCCcCCcceeeeCCCCCccceEEEeccCCCCCCCCcccccc-ceeeeecCCCCCCcccee
Q psy10189        304 NSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD-LKIKRRKSAKTKDETTVR  373 (376)
Q Consensus       304 ~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  373 (376)
                      .||.+||+||+.+....+  ..|..+.+.....     ..+.....+++..+ ..+.++||+|+||+|-.+
T Consensus       223 ~SL~eLv~~y~~~~~~~~--~~l~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~  286 (535)
T 2h8h_A          223 NSLQQLVAYYSKHADGLC--HRLTTVCPTSKPQ-----TQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMG  286 (535)
T ss_dssp             SSHHHHHHHHHHCCTTSS--SCCCEECCCCCCC-----CSSSSTTCSBCCGGGEEEEEEEEECSSEEEEEE
T ss_pred             cChHHhheeeccccCccc--ccccccccccccc-----ccccCccceecchhhhhhheecccCCCeEEEEE
Confidence            999999999999877763  3344333221100     01222445666654 456669999999998543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.97  E-value=4.8e-31  Score=256.50  Aligned_cols=193  Identities=30%  Similarity=0.523  Sum_probs=158.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeeeCCeeeeeecccccccccCcchhhhccCCCCCCccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIE  233 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~  233 (376)
                      ..++|+|||.++.++||+|++||++.|+++. +++||.++..|+.|+||+|||++...                      
T Consensus        44 ~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~----------------------  101 (495)
T 1opk_A           44 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNS----------------------  101 (495)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSS----------------------
T ss_pred             cEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceecccccccccc----------------------
Confidence            4689999999999999999999999999876 78999999999999999999998654                      


Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|.+|+.+|...++|+||||.|++.+|.|+|||+.++.|+||+|....+|.+++. ...|+++.+||+|
T Consensus       102 le~~~wyhg~i~r~~ae~ll~~~~~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~g~~~~~~~~~F~sl~eLv~~  181 (495)
T 1opk_A          102 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH  181 (495)
T ss_dssp             GGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHHH
T ss_pred             ccchhhhccCCCHHHHHHHhhCCCCceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecCCCceEeccCccchhHHHHhhh
Confidence            677899999999999999999888999999999999999999999999999999998888888887 5899999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCccceEEEeccCCCCCCCCcccccc-ceeeeecCCCCCCcccee
Q psy10189        313 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD-LKIKRRKSAKTKDETTVR  373 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  373 (376)
                      |...+.+.  ...|..|.++.... .++...+ ....+++.+. ..+.++||+|+||+|-.+
T Consensus       182 ~~~~~~g~--~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~  239 (495)
T 1opk_A          182 HSTVADGL--ITTLHYPAPKRNKP-TIYGVSP-NYDKWEMERTDITMKHKLGGGQYGEVYEG  239 (495)
T ss_dssp             HTTCCTTS--SSCCCEECCCCSCC-CCSSSCS-SSSCCBCCGGGEEEEEESGGGTTSSEEEE
T ss_pred             hccccccc--chhccccccccccc-cccccCc-cccccccCHHHceeeeEecCCCCeEEEEE
Confidence            98877665  44455554432111 1222221 2344555554 455669999999998543

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.97  E-value=9.8e-31  Score=254.94  Aligned_cols=202  Identities=33%  Similarity=0.551  Sum_probs=161.2

Q ss_pred             cccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHhh
Q psy10189         56 KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEY  133 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~  133 (376)
                      ...+||||.|+|++|+++|.. .++|+||||+|.+.++.|+||+..++.++|++|.. ..+.|.+.+ ..|.|+.+||+|
T Consensus         2 ~~~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~~~~~~l~~~~~F~sl~eLv~~   80 (525)
T 2shp_A            2 KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQN-TGDYYDLYGGEKFATLAELVQY   80 (525)
T ss_dssp             CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEC-SSSCEEETTSCEESSHHHHHHH
T ss_pred             CCCCcccCCCCHHHHHHHHHhCCCCCcEEeeccCCCCCcEEEEEEECCEEEEEEEEe-cCCeEEECCCCeECCHHHHHHH
Confidence            457899999999999999976 68999999999999999999999999999999975 456676754 569999999999


Q ss_pred             hhcccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccCc
Q psy10189        134 HRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDM  213 (376)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~  213 (376)
                      |+.++...                              ..+.|..+.+.                        .|+.   
T Consensus        81 y~~~~~~l------------------------------~~~~g~~i~L~------------------------~Pv~---  103 (525)
T 2shp_A           81 YMEHHGQL------------------------------KEKNGDVIELK------------------------YPLN---  103 (525)
T ss_dssp             HHTCTTCS------------------------------BSSSSCBCCCC------------------------EECC---
T ss_pred             HHhCCccc------------------------------ccccccccccc------------------------cccc---
Confidence            98765321                              00111111000                        0000   


Q ss_pred             chhhhccCCCCCCccccccccccccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEeCC----------e
Q psy10189        214 NWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSD----------G  282 (376)
Q Consensus       214 ~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~~~----------~  282 (376)
                                       ...+...+||||.|+|.+||++|... ++|+||||+|++.+|.|+||++..+          .
T Consensus       104 -----------------~~dp~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~~  166 (525)
T 2shp_A          104 -----------------CADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSK  166 (525)
T ss_dssp             -----------------CCCCTTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCE
T ss_pred             -----------------ccccccceeecccCCHHHHHHHHhccCCCceEEEEecCCCCCCEEEEEEECCccccccccccc
Confidence                             00134568999999999999999854 8999999999989999999999987          8


Q ss_pred             eEEEEEEEcCCCcEEEe-ccccCCHHHHHHHHhhCCcCCc--ceeeeCCCCCcc
Q psy10189        283 VQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRS--QDVKLRDMVPEE  333 (376)
Q Consensus       283 v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y~~~~~~~~--~~~~L~~p~~~~  333 (376)
                      |+||+|... .|.|+++ ...|+||.+||+||+.+++...  ..+.|++|++..
T Consensus       167 v~H~~I~~~-~g~~~l~~~~~F~sL~eLV~~y~~~~l~~~~g~~~~L~~P~~~t  219 (525)
T 2shp_A          167 VTHVMIRCQ-ELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTT  219 (525)
T ss_dssp             EEEEEEEEE-TTEEESSSSCCBSSHHHHHHHHHHSCCBCTTSCBCCCCEECCCS
T ss_pred             eEEEEEEec-CCeEEECCCceeCcHHHHHHhhhccCccccCCeEEEeecccccc
Confidence            999999876 6778887 5899999999999999987653  457788887654

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.97  E-value=5.2e-32  Score=235.60  Aligned_cols=163  Identities=29%  Similarity=0.654  Sum_probs=141.8

Q ss_pred             ceeccccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCC-----------
Q psy10189         46 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS-----------  114 (376)
Q Consensus        46 G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~-----------  114 (376)
                      |++|+||..+...+||||.|+|++|+.+|...++|+||||+|.+.++.|+||+..++.++|++|.....           
T Consensus         1 g~i~~~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~   80 (230)
T 2dvj_A            1 GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQP   80 (230)
T ss_dssp             --CCSCCCSSSSSSSCCSSCCTTHHHHHHTTSSSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSST
T ss_pred             CCcCcccccccCCCcccCCCCHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCcccccccccc
Confidence            899999999999999999999999999999889999999999999999999999999999999987653           


Q ss_pred             ------CcEEEeceeecchhhhHhhhhcccccccccccccCCCch-------------hhhhhhcccCCCCCCCceeccC
Q psy10189        115 ------GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPE-------------ECLVQALYDFTPQEPGELEFRR  175 (376)
Q Consensus       115 ------~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~al~~~~~~~~~eL~~~~  175 (376)
                            +.|.+....|.||.+||+||+.+.+..   ..+..|.+.             ...++|+|+|.++.++||+|++
T Consensus        81 ~~g~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~---~~L~~Pv~~~~~~s~~~L~~~~~~~~~al~dy~~~~~~eLsf~~  157 (230)
T 2dvj_A           81 PPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT---TTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK  157 (230)
T ss_dssp             TTSCCCCCEESSSCEESSHHHHHTTSTTTCSSS---SCCCCBCCSCCCCCCCCCSCCCCCCCBCCSCCCCSSSSSCCCCS
T ss_pred             cccccceEEEeCCceeCCHHHHHHHHhhCcccc---ccccccccccccccccccCcccceeEEEeeeecCCCCCCccCcC
Confidence                  467887777999999999999877541   223333221             2468999999999999999999


Q ss_pred             CCEEEEEecCCCcceeee-eCCeeeeeeccccccccc
Q psy10189        176 GDVITVTDRSDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       176 g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      ||+|.|+++.+++||.|+ .+|+.|+||++||+++..
T Consensus       158 Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~  194 (230)
T 2dvj_A          158 GDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRP  194 (230)
T ss_dssp             SCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCS
T ss_pred             CCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCC
Confidence            999999999999999998 789999999999998864

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.97  E-value=1.5e-30  Score=236.65  Aligned_cols=165  Identities=24%  Similarity=0.505  Sum_probs=136.2

Q ss_pred             eccCCccceeccccccccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCe---eEEEEEEE-c
Q psy10189         39 AELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDG---VQHFKVLR-D  112 (376)
Q Consensus        39 ~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~---v~h~~I~~-~  112 (376)
                      +..+|..|++|+||..+...+||||.|+|.+|+.+|..  ..+|+||||+| +.++.|+||+..++.   |+|++|.. .
T Consensus        22 ~~~~g~~~~~~~~~~~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~  100 (308)
T 3qwy_A           22 ASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGE  100 (308)
T ss_dssp             ------------CCCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECC
T ss_pred             hhccCCccccccccCcccccccccCCCCHHHHHHHHhccCCCCceEEEEcc-CCCCCEEEEEEeCCCCCceEEEEEeecc
Confidence            34678999999999999999999999999999999987  67899999999 889999999999998   99999987 5


Q ss_pred             CC------CcEEEeceeecchhhhHhhhhcccccccccccccCCC--chhhhhhhcccCCCCCCCceeccCCCEEEEEec
Q psy10189        113 SS------GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMV--PEECLVQALYDFTPQEPGELEFRRGDVITVTDR  184 (376)
Q Consensus       113 ~~------~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~  184 (376)
                      .+      +.|++....|.++.+|+++|+..+...   ..+..|.  |....++|+|+|.++.+++|+|++||+|.|+++
T Consensus       101 ~~~~g~~~g~~~~~~~~F~Sl~eLv~~y~~~~~~~---~~L~~P~~~p~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~  177 (308)
T 3qwy_A          101 PKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTE---ASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSK  177 (308)
T ss_dssp             CCTTTTCCCCEEETTEEESSHHHHHHHHHHSCSSS---CCCCEECCCCCCEEEEESSCBCCSSTTBCCBCTTCEEEEEEC
T ss_pred             CCCcCcccceEEEeCeeeCCHHHHHHHHhhccccc---chhccccccccceeEEEeceEcCCCCCcCcCCCCCEEEEEEc
Confidence            44      789999888999999999999887632   2233332  334679999999999999999999999999999


Q ss_pred             CCCcceeeee-CCeeeeeeccccc
Q psy10189        185 SDQHWWHGEI-GARKGLFPATYIL  207 (376)
Q Consensus       185 ~~~~w~~~~~-~~~~G~~P~~~v~  207 (376)
                      .+++||.|+. +|+.|+||++||+
T Consensus       178 ~~~~Ww~g~~~~g~~G~~P~~yv~  201 (308)
T 3qwy_A          178 TNQDWWEARNALGTTGLVPANYVQ  201 (308)
T ss_dssp             CSSSEEEEECTTSCEEEEEGGGEE
T ss_pred             CCCCeEEEEeCCCCeeEecccccc
Confidence            9999999995 9999999999999

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.97  E-value=2.6e-30  Score=215.75  Aligned_cols=137  Identities=36%  Similarity=0.686  Sum_probs=124.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceecccccc----ccccccccccCCHHHHHHHhc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE----MKNHDWYYGRITRADAERLLS   75 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve----~~~~~w~~g~isr~~ae~~l~   75 (376)
                      .|+|+|||+|++++||+|++||+|.|++.  +++||.++.  +|++||||+|||+    +...+||||.|+|.+|+.+|.
T Consensus        14 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~--~~~Ww~~~~~~~g~~G~vP~~yv~~~~~l~~~~w~~g~isr~~ae~lL~   91 (175)
T 4d8k_A           14 LVIALHSYEPSHDGDLGFEKGEQLRILEQ--SGEWWKAQSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLL   91 (175)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEEC--CSSEEEEEETTTCCEEEEEGGGEEETTCSTTCTTBCSSCCHHHHHHHHH
T ss_pred             EEEEccCcCCcCCcccccccCCEEEEEcc--CCCEEEEEECCCCceeeeccccccccccccccceecCcccHHHHHHHHh
Confidence            58999999999999999999999999997  358999996  8999999999998    456889999999999999997


Q ss_pred             C--CCCccEEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEec-eeecchhhhHhhhhccccc
Q psy10189         76 N--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYHRTASVS  140 (376)
Q Consensus        76 ~--~~~G~flvR~s~~~~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~~~~~~~~  140 (376)
                      .  .++|+||||.|.+.++.|+||+..     ++.++|++|....+|.|++.. ..|.||.+||+||+.++..
T Consensus        92 ~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~y~~~~~g  164 (175)
T 4d8k_A           92 APGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASDG  164 (175)
T ss_dssp             STTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSEESSHHHHHHHHHHCCTT
T ss_pred             cCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCccCCHHHHHHHHhhCCCC
Confidence            6  579999999999999999999998     778999999988889999887 4699999999999987644

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.97  E-value=1.3e-30  Score=250.67  Aligned_cols=200  Identities=28%  Similarity=0.458  Sum_probs=155.4

Q ss_pred             chhhhhhhcccCCCCCCCceeccCCCEEEEEec-CCCcceeeeeC-CeeeeeecccccccccCcchhhhccCCCCCCccc
Q psy10189        152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGEIG-ARKGLFPATYILNMEDDMNWYRAELDGKEGLIPS  229 (376)
Q Consensus       152 ~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~-~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~  229 (376)
                      |....++|+|||.++.++||+|++||++.|+++ .+++||.++.. |+.|+||+|||++.....                
T Consensus         9 ~~~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~----------------   72 (450)
T 1k9a_A            9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK----------------   72 (450)
T ss_dssp             CTTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCC----------------
T ss_pred             CCCCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccccc----------------
Confidence            344679999999999999999999999999998 67899999976 999999999999864310                


Q ss_pred             cccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHH
Q psy10189        230 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNE  308 (376)
Q Consensus       230 ~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~  308 (376)
                      .-..+..++||||.|+|.+|+++|...++|+||||.|++..|.|+||++.++.|+||+|... ++.+++. ...|.|+.+
T Consensus        73 ~~~~~~~~~wyhg~i~r~~ae~~L~~~~~G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~-~~~~~i~~~~~F~sl~e  151 (450)
T 1k9a_A           73 AGTKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYH-ASKLSIDEEVYFENLMQ  151 (450)
T ss_dssp             CCTTEESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEE-TTEEESSSSSCBSSHHH
T ss_pred             cccccccccccccCcCHHHhhhhhccCCCceEEEEecCCCCCceEEEEEeCCeeeEEEEEec-CCceEeccccccccHHH
Confidence            01125778999999999999999987788999999999999999999999999999999654 4567766 589999999


Q ss_pred             HHHHHhhCCcCCcceeeeCCCCCccceEEEeccCCCCCCCCccccc-cceeeeecCCCCCCcccee
Q psy10189        309 LVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRR-DLKIKRRKSAKTKDETTVR  373 (376)
Q Consensus       309 lv~~y~~~~~~~~~~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  373 (376)
                      ||+||..+....  ...|..|.+......+...+   ....+++.. ...+.++||+|+||+|-.+
T Consensus       152 Lv~~y~~~~~~~--~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~lG~G~fg~V~~~  212 (450)
T 1k9a_A          152 LVEHYTTDADGL--CTRLIKPKVMEGTVAAQDEF---YRSGWALNMKELKLLQTIGKGEFGDVMLG  212 (450)
T ss_dssp             HHHHHHHCCTTS--SSCCCEECCCTTCEEHHHHH---HHTTCBCCGGGEEEEEEEEECSSEEEEEE
T ss_pred             HHhhhcccccch--hhhccccccccCcccchhhh---cccccccChHHeEEEeeecCcCCeeEEEE
Confidence            999999887766  33455554333222211111   012334443 3456679999999998654

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.97  E-value=3.5e-30  Score=251.42  Aligned_cols=200  Identities=34%  Similarity=0.522  Sum_probs=157.8

Q ss_pred             cccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ceeecchhhhHhhhh
Q psy10189         58 HDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHR  135 (376)
Q Consensus        58 ~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~li~~~~  135 (376)
                      .+||||.|+|.+|+.+|.. .++|+||||.|.+.+|.|+||+..++.++|++|.. ..+.|.+. ...|.|+.+||+||+
T Consensus         2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~~~~~~~~~~~~F~sl~~Lv~~y~   80 (532)
T 2b3o_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQN-SGDFYDLYGGEKFATLTELVEYYT   80 (532)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEETTEEEEEEEEC-SSSCEEETTSCEESCHHHHHHHHH
T ss_pred             CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEECCEEEEEEEEe-cCCEEEECCCcccCCHHHHHHHHH
Confidence            5799999999999999987 48999999999999999999999999999999985 55667674 456999999999998


Q ss_pred             cccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccCcch
Q psy10189        136 TASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW  215 (376)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~  215 (376)
                      ..+...                              ....|..+.+                        ..|+..    
T Consensus        81 ~~~~~l------------------------------~~~~g~~~~L------------------------~~P~~~----  102 (532)
T 2b3o_A           81 QQQGVL------------------------------QDRDGTIIHL------------------------KYPLNC----  102 (532)
T ss_dssp             TTCSCB------------------------------CCSSSCCBCC------------------------CEECCC----
T ss_pred             hccccc------------------------------ccccCchhhc------------------------cccccc----
Confidence            765210                              0001110000                        001100    


Q ss_pred             hhhccCCCCCCccccccccccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeCC---------eeEE
Q psy10189        216 YRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSD---------GVQH  285 (376)
Q Consensus       216 ~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~~---------~v~h  285 (376)
                                      ..+..++||||.|+|.+||.+|. ..++|+||||+|++.+|.|+|||+..+         .|+|
T Consensus       103 ----------------~~p~~~~w~~g~i~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~Lsv~~~~~~~~~~~~~~v~h  166 (532)
T 2b3o_A          103 ----------------SDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTH  166 (532)
T ss_dssp             ----------------CCGGGCTTBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEEC----CCEEEEE
T ss_pred             ----------------cccccccccccccchHHHHHHHhcCCCCceEEEecCCCCCCceEEEEEecCccccccCCCceEE
Confidence                            01345699999999999999996 357899999999999999999999877         8999


Q ss_pred             EEEEEcCCCcEEEe-ccccCCHHHHHHHHhhCCcCC--cceeeeCCCCCcc
Q psy10189        286 FKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSR--SQDVKLRDMVPEE  333 (376)
Q Consensus       286 ~~I~~~~~~~~~~~-~~~f~sl~~lv~~y~~~~~~~--~~~~~L~~p~~~~  333 (376)
                      |+|... +|.|+++ ...|+||.+||+||+++++..  ...+.|++|++..
T Consensus       167 ~~I~~~-~g~~~l~~~~~F~sl~eLV~~y~~~~l~~~~g~~~~L~~P~~~t  216 (532)
T 2b3o_A          167 IKVMCE-GGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYAT  216 (532)
T ss_dssp             EEEBCC-TTSBBSSSSCCBSSHHHHHHHHHHHCEECSSSCEECCCEECCCC
T ss_pred             EEEEEc-CCceeeCCCcccCcHHHHHhhccccCccccCCeeEecccccccc
Confidence            999875 6778887 589999999999999987643  2467788887654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.96  E-value=1e-29  Score=244.69  Aligned_cols=188  Identities=30%  Similarity=0.551  Sum_probs=152.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeecccccccccCcchhhhccCCCCCCcccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYI  232 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~  232 (376)
                      ..++|+|||.++.++||+|++||++.|+++. ++||.|+  .+|+.|+||+|||.+...                     
T Consensus         9 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~-~~W~~~~~~~~g~~G~~P~~yv~~~~~---------------------   66 (454)
T 1qcf_A            9 IIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS---------------------   66 (454)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEETTTCCEEEEEGGGEEETTC---------------------
T ss_pred             eEEEECcccCCcCCCcCcccCCCEEEEEecC-CCCeEEEECCCCceEEecchhcccccc---------------------
Confidence            4689999999999999999999999999884 7899999  589999999999998643                     


Q ss_pred             ccccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEe-ccccC
Q psy10189        233 EMKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLW-VVKFN  304 (376)
Q Consensus       233 ~~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~-~~~f~  304 (376)
                       ++.++||||.|+|++|+++|.  +.++|+||||.|++.+|.|+|||+.     ++.|+||+|...++|.|++. ...|.
T Consensus        67 -le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~g~~~i~~~~~F~  145 (454)
T 1qcf_A           67 -LETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFS  145 (454)
T ss_dssp             -GGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBS
T ss_pred             -cccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCCCcEEEeCccccC
Confidence             677899999999999999985  4689999999999999999999998     67899999998888888887 57999


Q ss_pred             CHHHHHHHHhhCCcCCcceeeeCCCCCccceEEEeccCCCCCCCCcccccc-ceeeeecCCCCCCcccee
Q psy10189        305 SLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD-LKIKRRKSAKTKDETTVR  373 (376)
Q Consensus       305 sl~~lv~~y~~~~~~~~~~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  373 (376)
                      ++.+||+||+++....  ...|..|......      -.+....++++... ..+.++||+|+||+|-.+
T Consensus       146 sl~eLv~~y~~~~~~l--~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~lG~G~fg~V~~~  207 (454)
T 1qcf_A          146 TLQELVDHYKKGNDGL--CQKLSVPCMSSKP------QKPWEKDAWEIPRESLKLEKKLGAGQFGEVWMA  207 (454)
T ss_dssp             SHHHHHHHHTSSCTTS--SSCCCSBCCCCCC------CCCCCTTCSBCCGGGEEEEEEEECCSSEEEEEE
T ss_pred             CHHHHHHHHHhccCCc--cccccccccccCc------cccccccceeechHHeEEEEEcccCCceEEEEE
Confidence            9999999999887665  3334443321110      01222455666554 456669999999998544

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.96  E-value=1.7e-30  Score=235.54  Aligned_cols=159  Identities=30%  Similarity=0.662  Sum_probs=136.8

Q ss_pred             cccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEc-----------------
Q psy10189         50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD-----------------  112 (376)
Q Consensus        50 ~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~-----------------  112 (376)
                      ++|-.+...+||||.|+|++|+.+|....+|+||||.|.+.++.|+||+..++.++|++|...                 
T Consensus         3 ~~~~~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~   82 (304)
T 2eyz_A            3 GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGV   82 (304)
T ss_dssp             SSCCCSSSSSSCCCCCCSSHHHHTTTTCCSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSS
T ss_pred             CccccccCCCCccCCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeecccccccccccccccccc
Confidence            466677888999999999999999998999999999999999999999999999999999872                 


Q ss_pred             CCCcEEEeceeecchhhhHhhhhcccccccccccccCCC-------------chhhhhhhcccCCCCCCCceeccCCCEE
Q psy10189        113 SSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMV-------------PEECLVQALYDFTPQEPGELEFRRGDVI  179 (376)
Q Consensus       113 ~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~al~~~~~~~~~eL~~~~g~~i  179 (376)
                      ..+.|.+....|.||.+||+||+.+++..   ..|..|.             .....++|+|+|.++.++||+|++||+|
T Consensus        83 ~~~~~~~~~~~F~sl~~LV~~y~~~~l~~---~~L~~P~~~~~~~~g~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i  159 (304)
T 2eyz_A           83 SPSRLRIGDQEFDSLPALLEFYKIHYLDT---TTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDIL  159 (304)
T ss_dssp             SCCCCCBTTBCCSCHHHHHTTTTTSCCSS---SSSCCBCCSCSCCSCCCCCCCCCCEEEECSCCCCSCSSSCCCCTTCEE
T ss_pred             CCCeEEeCCcEECCHHHHHHHhhhCcccc---ceeccccccccccccccCCcccceeEEEEeeecCCCCCcCcccCCCEE
Confidence            56677777677999999999999886531   1122221             1234689999999999999999999999


Q ss_pred             EEEecCCCcceeee-eCCeeeeeeccccccccc
Q psy10189        180 TVTDRSDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       180 ~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      .|+++.+++||.|+ .+|+.|+||++||+.+..
T Consensus       160 ~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~  192 (304)
T 2eyz_A          160 RIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRP  192 (304)
T ss_dssp             EEEECCSSSEEEEECTTSCEEEEESTTEEECCC
T ss_pred             EEEEecCCCcEEEEeCCCceeccchhccccccC
Confidence            99999999999999 689999999999998754

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.96  E-value=7e-31  Score=240.41  Aligned_cols=232  Identities=25%  Similarity=0.437  Sum_probs=81.8

Q ss_pred             cccccccccccCCHHHHHHHhcCCCCccEEEeecCCC-CCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhH
Q psy10189         54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELV  131 (376)
Q Consensus        54 e~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li  131 (376)
                      .+...+||||.|+|.+|+.+|...++|+||||.|.+. ++.|+||+..++.++|++|... +|.|++.. ..|+|+.+||
T Consensus         6 sL~~~~WYhG~IsR~eAE~lL~~~~dG~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~-~g~y~l~~~~~F~SL~eLV   84 (373)
T 3hhm_B            6 SLQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR-DGKYGFSDPLTFSSVVELI   84 (373)
T ss_dssp             GGGGCTTEEESCCHHHHHHHTTTCCTTEEEEEECSCC--CCEEEEEEETTEEEEEEECCS-SSCBCSSSSCCBSSSHHHH
T ss_pred             CcccCCccCCCCCHHHHHHHhcCCCCCCEEEeccCCCCCCCEEEEEEECCeeEEEEEEec-CCeEEeCCCCCcCCHHHHH
Confidence            3567899999999999999999999999999999998 9999999999999999999864 57777776 4599999999


Q ss_pred             hhhhcccccc---cccccccCCCchh-----------------------------hhh----------------------
Q psy10189        132 EYHRTASVSR---SQDVKLRDMVPEE-----------------------------CLV----------------------  157 (376)
Q Consensus       132 ~~~~~~~~~~---~~~~~~~~~~~~~-----------------------------~~~----------------------  157 (376)
                      +||+.+++..   ...+.+..|.+..                             ..+                      
T Consensus        85 ~~Y~~~~l~~~~~gl~~~L~~Pv~r~~qd~~v~~~~~e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~  164 (373)
T 3hhm_B           85 NHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKEDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIE  164 (373)
T ss_dssp             HHHHHSCGGGSCTTCCCCCCEECCSCCC-CCCSCC--CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhCCccccCCCCCcccCCCCCCcchhhccccccHHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHH
Confidence            9999988542   2223333332110                             000                      


Q ss_pred             -----hhc------------------ccCCCCCCCcee------------------------------------------
Q psy10189        158 -----QAL------------------YDFTPQEPGELE------------------------------------------  172 (376)
Q Consensus       158 -----~al------------------~~~~~~~~~eL~------------------------------------------  172 (376)
                           +.+                  +...++. .++.                                          
T Consensus       165 af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~-~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  243 (373)
T 3hhm_B          165 AFNETIKIFEEQCQTQERYSKEYIEKFKREGNE-KEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMN  243 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCh-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                 000                  0011111 1100                                          


Q ss_pred             ----------ccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccCcchhhhccCCCCCCc----ccccccccccc
Q psy10189        173 ----------FRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLI----PSNYIEMKNHD  238 (376)
Q Consensus       173 ----------~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~----p~~~~~~~~~~  238 (376)
                                ..+...+.        |+....     .-+.       .--.|+. ...+.+++.    ..+...++.++
T Consensus       244 ~lkp~l~ql~k~rd~~~~--------~L~~~g-----~~~~-------~i~~~L~-~~~~~~~~~~~e~~~~~~~~~~~~  302 (373)
T 3hhm_B          244 SIKPDLIQLRKTRDQYLM--------WLTQKG-----VRQK-------KLNEWLG-NENTEDQYSLVEDDEDLPHHDEKT  302 (373)
T ss_dssp             HHHHHHHHHHHHHTC-----------------------------------------------------------------
T ss_pred             ccChHHHHHHHHHHHHHH--------HHHHcC-----CCHH-------HHHHHhc-cCCCCCcccccccccccccccCCC
Confidence                      00011111        111110     0000       0000111 000111111    11223477889


Q ss_pred             ccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-cccCCHHHH
Q psy10189        239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNEL  309 (376)
Q Consensus       239 w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~l  309 (376)
                      ||||.|+|.+|+.+|.+.++|+||||.| +.+|.|+|||+.++.|+||+|...++|.|+++. ..|+||.+|
T Consensus       303 WyhG~isR~~AE~LL~~~~~G~FLVR~S-s~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~SL~eL  373 (373)
T 3hhm_B          303 WNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKEL  373 (373)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CcCCCCCHHHHHHHhccCCCCcEEEEec-CCCCCEEEEEEECCeEEEEEEEEcCCCcEEeCCCCCCCChhhC
Confidence            9999999999999999889999999999 889999999999999999999988888888886 899999886

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.96  E-value=5.5e-29  Score=207.51  Aligned_cols=155  Identities=25%  Similarity=0.502  Sum_probs=133.2

Q ss_pred             cccccccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCe---eEEEEEEE---cCC----CcE
Q psy10189         50 SNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDG---VQHFKVLR---DSS----GKF  117 (376)
Q Consensus        50 ~nyve~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~---v~h~~I~~---~~~----~~~  117 (376)
                      ++|-.+...+||||.|+|++|+.+|..  .++|+||||.| +.++.|+||+..++.   ++|++|..   ..+    +.|
T Consensus         4 ~~~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~   82 (174)
T 3qwx_X            4 NGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGV   82 (174)
T ss_dssp             CCSCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCE
T ss_pred             cccCccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceE
Confidence            455567788999999999999999987  56899999999 889999999999998   99999987   444    488


Q ss_pred             EEeceeecchhhhHhhhhcccccccccccccCCC--chhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-e
Q psy10189        118 FLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMV--PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-I  194 (376)
Q Consensus       118 ~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~  194 (376)
                      ++....|.++.+||++|+..+...   ..+..|.  |....++|+|+|.++.++||+|++||+|.|+++.+++||.|+ .
T Consensus        83 ~~~~~~F~sl~eLv~~y~~~~~~~---~~L~~P~~~p~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~  159 (174)
T 3qwx_X           83 KIANQSFPDIPALLNHFKMRVLTE---ASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA  159 (174)
T ss_dssp             EETTEEESSHHHHHHHTTSSCSSS---CCCCEECCCCCSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECT
T ss_pred             EECCeecCcHHHHhhhhhcCcccc---cccccccccccccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEEC
Confidence            888777999999999999887522   2233333  345678999999999999999999999999999999999999 5


Q ss_pred             CCeeeeeecccccc
Q psy10189        195 GARKGLFPATYILN  208 (376)
Q Consensus       195 ~~~~G~~P~~~v~~  208 (376)
                      +|+.|+||+|||+.
T Consensus       160 ~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          160 LGTTGLVPANYVQI  173 (174)
T ss_dssp             TCCEEEEEGGGEEE
T ss_pred             CCCEEEEChHHEEe
Confidence            99999999999963

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.96  E-value=6.8e-29  Score=190.41  Aligned_cols=109  Identities=26%  Similarity=0.515  Sum_probs=100.8

Q ss_pred             CCCCCCccccccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec
Q psy10189        221 DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV  300 (376)
Q Consensus       221 ~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~  300 (376)
                      .|++|++|.+|++++.++||||.|+|++|+++|.+.++|+||||+|++.++.|+|||+.++.|+||+|....+|.|++++
T Consensus         3 ~g~~G~ip~n~v~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~   82 (111)
T 2eo3_A            3 SGSSGMSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD   82 (111)
T ss_dssp             CCCCCSCSCCCCTTCHHHHEEESCCHHHHHHHHSSCCTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEETTTEEEETT
T ss_pred             CCccccccccccccCCCCcccCCCCHHHHHHHhcCCCCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECC
Confidence            46788999999889999999999999999999998899999999998889999999999999999999987788999998


Q ss_pred             cccCCHHHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        301 VKFNSLNELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       301 ~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ..|+||.+||+||+.+++.   .++|++|+|+
T Consensus        83 ~~F~sl~~LV~~y~~~~l~---~~~L~~Pv~r  111 (111)
T 2eo3_A           83 QEFDHLPALLEFYKIHYLD---TTTLIEPAPR  111 (111)
T ss_dssp             CCBSSHHHHHHHHTTSCSS---SSCCCCBCCC
T ss_pred             cccCCHHHHHHHHhhCCCC---CccCCCcCcC
Confidence            9999999999999999886   5789999874

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.95  E-value=3e-29  Score=218.12  Aligned_cols=133  Identities=29%  Similarity=0.553  Sum_probs=117.2

Q ss_pred             CCccccccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCC-----------
Q psy10189        225 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS-----------  293 (376)
Q Consensus       225 g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~-----------  293 (376)
                      |++|.+|..++.++||||.|+|++||++|.+.++|+||||+|++.+|.|+|||+.++.|+||+|....+           
T Consensus         1 g~i~~~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~   80 (230)
T 2dvj_A            1 GAMAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQP   80 (230)
T ss_dssp             --CCSCCCSSSSSSSCCSSCCTTHHHHHHTTSSSSCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSST
T ss_pred             CCcCcccccccCCCcccCCCCHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCcccccccccc
Confidence            577888888899999999999999999999889999999999988999999999999999999987653           


Q ss_pred             ------CcEEEeccccCCHHHHHHHHhhCCcCCcceeeeCCCCCcc-------------ceEEEeccCCCCCCCCccccc
Q psy10189        294 ------GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE-------------CLVQALYDFTPQEPGELEFRR  354 (376)
Q Consensus       294 ------~~~~~~~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~-------------~~~~~~~~~~~~~~~~l~~~~  354 (376)
                            +.|+++...|+||.+||+||+.+++.   .++|++|+++.             ..++|+|+|.+.+.+||+|++
T Consensus        81 ~~g~~~~~~~~~~~~F~sl~~LV~~y~~~~l~---~~~L~~Pv~~~~~~s~~~L~~~~~~~~~al~dy~~~~~~eLsf~~  157 (230)
T 2dvj_A           81 PPGVSPSRLRIGDQEFDSLPALLEFYKIHYLD---TTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKK  157 (230)
T ss_dssp             TTSCCCCCEESSSCEESSHHHHHTTSTTTCSS---SSCCCCBCCSCCCCCCCCCSCCCCCCCBCCSCCCCSSSSSCCCCS
T ss_pred             cccccceEEEeCCceeCCHHHHHHHHhhCccc---cccccccccccccccccccCcccceeEEEeeeecCCCCCCccCcC
Confidence                  46888889999999999999999876   46788888753             347899999999999999999


Q ss_pred             cceeee
Q psy10189        355 DLKIKR  360 (376)
Q Consensus       355 ~~~~~~  360 (376)
                      |++|.-
T Consensus       158 Gd~i~v  163 (230)
T 2dvj_A          158 GDILRI  163 (230)
T ss_dssp             SCBCCC
T ss_pred             CCEEEE
Confidence            988765

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.94  E-value=2.1e-26  Score=191.82  Aligned_cols=126  Identities=22%  Similarity=0.418  Sum_probs=110.4

Q ss_pred             ccccccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCe---eEEEEEEE---cCC----CcEEE
Q psy10189        231 YIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDG---VQHFKVLR---DSS----GKFFL  298 (376)
Q Consensus       231 ~~~~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~---v~h~~I~~---~~~----~~~~~  298 (376)
                      +..++.++||||.|+|++||++|..  .++|+||||+| +.++.|+|||+.+++   |+||+|.+   +.+    +.|++
T Consensus         6 ~~~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~~~   84 (174)
T 3qwx_X            6 FDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKI   84 (174)
T ss_dssp             SCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCEEE
T ss_pred             cCccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceEEE
Confidence            3347889999999999999999975  56899999999 899999999999998   99999988   444    48999


Q ss_pred             eccccCCHHHHHHHHhhCCcCCcceeeeCCCCCcc--ceEEEeccCCCCCCCCccccccceeee
Q psy10189        299 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE--CLVQALYDFTPQEPGELEFRRDLKIKR  360 (376)
Q Consensus       299 ~~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~  360 (376)
                      ++..|+||.+||+||+.+++ .  .+.|+.|++++  ..++|+|+|.+.+.+||+|++|++|.-
T Consensus        85 ~~~~F~sl~eLv~~y~~~~~-~--~~~L~~P~~~p~~~~~~alydy~~~~~~eLsf~~Gd~i~v  145 (174)
T 3qwx_X           85 ANQSFPDIPALLNHFKMRVL-T--EASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEI  145 (174)
T ss_dssp             TTEEESSHHHHHHHTTSSCS-S--SCCCCEECCCCCSEEEEESSCBCCSSTTBCCBCTTCEEEE
T ss_pred             CCeecCcHHHHhhhhhcCcc-c--ccccccccccccccEEEEecCcccCCCCccccccCCEEEE
Confidence            88999999999999999886 3  56688888764  458899999999999999999988765

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.93  E-value=6.5e-26  Score=206.06  Aligned_cols=137  Identities=21%  Similarity=0.424  Sum_probs=114.4

Q ss_pred             cCCCCCCccccccccccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCe---eEEEEEEE-cCC
Q psy10189        220 LDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDG---VQHFKVLR-DSS  293 (376)
Q Consensus       220 ~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~---v~h~~I~~-~~~  293 (376)
                      ..|.++++|.++..++.++||||.|+|++||++|..  .++|+||||+| +.+|.|+|||+.+++   |+||+|.. ..+
T Consensus        24 ~~g~~~~~~~~~~~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~  102 (308)
T 3qwy_A           24 MTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPK  102 (308)
T ss_dssp             ----------CCCGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCC
T ss_pred             ccCCccccccccCcccccccccCCCCHHHHHHHHhccCCCCceEEEEcc-CCCCCEEEEEEeCCCCCceEEEEEeeccCC
Confidence            456778888888889999999999999999999975  67899999999 899999999999998   99999988 544


Q ss_pred             ------CcEEEeccccCCHHHHHHHHhhCCcCCcceeeeCCCCCcc--ceEEEeccCCCCCCCCccccccceeee
Q psy10189        294 ------GKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE--CLVQALYDFTPQEPGELEFRRDLKIKR  360 (376)
Q Consensus       294 ------~~~~~~~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~  360 (376)
                            |.|++++..|+|+.+||+||+.+++.   .+.|..|++++  ..++|+|+|.+.+.+||+|++|++|.-
T Consensus       103 ~~g~~~g~~~~~~~~F~Sl~eLv~~y~~~~~~---~~~L~~P~~~p~~~~~~al~dy~~~~~~eLsf~~Gd~i~v  174 (308)
T 3qwy_A          103 EDGTAAAGVKIANQSFPDIPALLNHFKMRVLT---EASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEI  174 (308)
T ss_dssp             TTTTCCCCEEETTEEESSHHHHHHHHHHSCSS---SCCCCEECCCCCCEEEEESSCBCCSSTTBCCBCTTCEEEE
T ss_pred             CcCcccceEEEeCeeeCCHHHHHHHHhhcccc---cchhccccccccceeEEEeceEcCCCCCcCcCCCCCEEEE
Confidence                  78999999999999999999999874   45688888763  568999999999999999999988764

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.93  E-value=9.3e-26  Score=175.72  Aligned_cols=98  Identities=44%  Similarity=0.635  Sum_probs=89.2

Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv  310 (376)
                      +..++||||.|+|++||++|..  .++|+||||.|++.++.|+|||+.++.|+||+|..+.+|.|++. ...|+||.+||
T Consensus        13 l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV   92 (121)
T 2dly_A           13 LQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFSTLNEFV   92 (121)
T ss_dssp             GGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSSCEEEETTEEESSHHHHH
T ss_pred             cCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCCCEEECCCCccCCHHHHH
Confidence            6788999999999999999874  58999999999888999999999999999999998778889887 58999999999


Q ss_pred             HHHhhCCcCCcceeeeCCCCCcc
Q psy10189        311 EYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       311 ~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      +||+.+++.+  .++|+.|+++.
T Consensus        93 ~~y~~~~~~l--~~~L~~P~~~~  113 (121)
T 2dly_A           93 NYYTTTSDGL--CVKLEKPCLKI  113 (121)
T ss_dssp             HHHTTCCSSS--SSCCCSBCCCC
T ss_pred             HHHhhCCCCC--ceeCCeecCCC
Confidence            9999999876  77899998764

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.88  E-value=1.2e-27  Score=216.62  Aligned_cols=158  Identities=25%  Similarity=0.579  Sum_probs=136.5

Q ss_pred             ccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhh
Q psy10189         51 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNEL  130 (376)
Q Consensus        51 nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~l  130 (376)
                      ++-.+...+||||.|+|++|+.+|....+|+||||.|.+.++.|+||+..++.++|++|....+|.|.+.+..|.||.+|
T Consensus         5 ~~d~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~L   84 (303)
T 2lqn_A            5 RFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPAL   84 (303)
Confidence            34345678999999999999999999999999999999999999999999999999999987788888888789999999


Q ss_pred             HhhhhcccccccccccccCCC--------------------chhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcce
Q psy10189        131 VEYHRTASVSRSQDVKLRDMV--------------------PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW  190 (376)
Q Consensus       131 i~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~  190 (376)
                      |+||+.+++..   ..|..|.                    +....++|+|+|.++.++||+|++||+|.|+.+.+++||
T Consensus        85 v~~y~~~~~~~---~~L~~P~~r~~~~~~~~~~~p~~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww  161 (303)
T 2lqn_A           85 LEFYKIHYLDT---TTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWW  161 (303)
Confidence            99999877621   1111111                    123579999999999999999999999999999999999


Q ss_pred             eee-eCCeeeeeeccccccccc
Q psy10189        191 HGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       191 ~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      .|+ .+|+.||||++||+.+..
T Consensus       162 ~~~~~~g~~G~~P~~yv~~~~~  183 (303)
T 2lqn_A          162 SARNKDGRVGMIPVPYVEKLVR  183 (303)
Confidence            999 489999999999998754

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.93  E-value=1e-25  Score=169.31  Aligned_cols=98  Identities=51%  Similarity=0.913  Sum_probs=86.9

Q ss_pred             cccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHH
Q psy10189        230 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNEL  309 (376)
Q Consensus       230 ~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~l  309 (376)
                      ||+++..++||||.|+|++|+++|...++|+||||.|++.+|.|+|||+.++.|+||+|..+++|.|++.+..|+||.+|
T Consensus         2 nyi~l~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~L   81 (100)
T 1r1p_A            2 SFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKL   81 (100)
T ss_dssp             ----CTTTTTSCTTCCHHHHHHHHHTSCTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSSCEESSHHHH
T ss_pred             CccEeccCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeCCEeCCHHHH
Confidence            57778999999999999999999998899999999999889999999999999999999988788899988999999999


Q ss_pred             HHHHhhCCcCCcceeeeC
Q psy10189        310 VEYHRTASVSRSQDVKLR  327 (376)
Q Consensus       310 v~~y~~~~~~~~~~~~L~  327 (376)
                      |+||+.+++.....+.|+
T Consensus        82 V~~y~~~~l~~~~~i~L~   99 (100)
T 1r1p_A           82 VDYYRTTSISKQKQVFLR   99 (100)
T ss_dssp             HHHHTTSCSSSSSCCCCB
T ss_pred             HHHHHhCCCCCCCceEec
Confidence            999999998876555554

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.93  E-value=2.8e-25  Score=215.91  Aligned_cols=139  Identities=37%  Similarity=0.644  Sum_probs=126.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc----cccccccccCCHHHHHHHhcCC
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM----KNHDWYYGRITRADAERLLSNK   77 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~----~~~~w~~g~isr~~ae~~l~~~   77 (376)
                      .|+|+|||++++++||+|++||+|.|+++.++.+||.++.+|++|+||+|||+.    ...+||||.|+|.+|+.+|...
T Consensus        45 ~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~le~~~wyhg~i~r~~ae~ll~~~  124 (495)
T 1opk_A           45 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSG  124 (495)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSSGGGSTTEEEECCHHHHHHHGGGC
T ss_pred             EEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccccccchhhhccCCCHHHHHHHhhCC
Confidence            389999999999999999999999999975567999999999999999999984    4678999999999999999888


Q ss_pred             CCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHhhhhccccc
Q psy10189         78 HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHRTASVS  140 (376)
Q Consensus        78 ~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~~~~~~~~  140 (376)
                      .+|+||||.|++.++.|+||+..++.++|++|....+|.+++... .|.++.+|+.+|.....+
T Consensus       125 ~~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~g~~~~~~~~~F~sl~eLv~~~~~~~~g  188 (495)
T 1opk_A          125 INGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVADG  188 (495)
T ss_dssp             CTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHHHHTTCCTT
T ss_pred             CCceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecCCCceEeccCccchhHHHHhhhhcccccc
Confidence            899999999999999999999999999999999888888888765 499999999999876543

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.92  E-value=3.1e-26  Score=207.49  Aligned_cols=128  Identities=30%  Similarity=0.548  Sum_probs=112.6

Q ss_pred             cccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEE-----------------cC
Q psy10189        230 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-----------------DS  292 (376)
Q Consensus       230 ~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~-----------------~~  292 (376)
                      ++..++.++||||.|+|.+|+++|.+.++|+||||+|.+.+|.|+|||+.++.|+||+|.+                 ..
T Consensus         4 ~~~~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~   83 (304)
T 2eyz_A            4 NFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVS   83 (304)
T ss_dssp             SCCCSSSSSSCCCCCCSSHHHHTTTTCCSSCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSSS
T ss_pred             ccccccCCCCccCCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEeeccccccccccccccccccC
Confidence            3444788899999999999999999889999999999988999999999999999999987                 25


Q ss_pred             CCcEEEeccccCCHHHHHHHHhhCCcCCcceeeeCCCCCcc-------------ceEEEeccCCCCCCCCccccccceee
Q psy10189        293 SGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE-------------CLVQALYDFTPQEPGELEFRRDLKIK  359 (376)
Q Consensus       293 ~~~~~~~~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~  359 (376)
                      ++.|.++...|+||.+||+||+.+++.   .++|++|+++.             ..++|+|+|.+.+++||+|++|++|.
T Consensus        84 ~~~~~~~~~~F~sl~~LV~~y~~~~l~---~~~L~~P~~~~~~~~g~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i~  160 (304)
T 2eyz_A           84 PSRLRIGDQEFDSLPALLEFYKIHYLD---TTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILR  160 (304)
T ss_dssp             CCCCCBTTBCCSCHHHHHTTTTTSCCS---SSSSCCBCCSCSCCSCCCCCCCCCCEEEECSCCCCSCSSSCCCCTTCEEE
T ss_pred             CCeEEeCCcEECCHHHHHHHhhhCccc---cceeccccccccccccccCCcccceeEEEEeeecCCCCCcCcccCCCEEE
Confidence            677888889999999999999999875   45677777542             35889999999999999999998887


Q ss_pred             e
Q psy10189        360 R  360 (376)
Q Consensus       360 ~  360 (376)
                      -
T Consensus       161 v  161 (304)
T 2eyz_A          161 I  161 (304)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.92  E-value=5.1e-25  Score=211.76  Aligned_cols=138  Identities=38%  Similarity=0.714  Sum_probs=123.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccc----cccccccccCCHHHHHHHhc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM----KNHDWYYGRITRADAERLLS   75 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~----~~~~w~~g~isr~~ae~~l~   75 (376)
                      .|+|+|||+|+.++||+|++||+|.|+++ .+++||.++.  +|++||||+|||+.    ...+||||.|+|++|+.+|.
T Consensus         4 ~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~~ww~~~~~~~g~~G~~P~~yv~~~~~le~~~w~~g~~~r~~ae~~L~   82 (452)
T 1fmk_A            4 TFVALYDYESRTETDLSFKKGERLQIVNN-TEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLL   82 (452)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCC-CSSSEEEEEETTTCCEEEEEGGGEEETTSGGGSTTEEETCCHHHHHHHHT
T ss_pred             EEEECCccCCCCCCCCCccCCCEEEEecc-CCCCceEEEEcCCCcccccCcccccccccccccccccCCccHHHHHHHhc
Confidence            58999999999999999999999999987 5678999996  89999999999985    34789999999999999998


Q ss_pred             C--CCCccEEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEece-eecchhhhHhhhhccccc
Q psy10189         76 N--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHRTASVS  140 (376)
Q Consensus        76 ~--~~~G~flvR~s~~~~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~~~~~~~~  140 (376)
                      .  ..+|+||||.|++.+|.|+||+..     ++.++|++|....+|.|++... .|.|+.+|+++|......
T Consensus        83 ~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~~~~~~~F~Sl~~Li~~y~~~~~~  155 (452)
T 1fmk_A           83 NAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADG  155 (452)
T ss_dssp             CTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEESSHHHHHHHHTTCCTT
T ss_pred             cCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCCCEEEecCcccCCHHHHHHHhhhcccc
Confidence            7  467999999999999999999987     5689999999988888888865 599999999999876543

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.92  E-value=6.2e-25  Score=165.32  Aligned_cols=95  Identities=41%  Similarity=0.719  Sum_probs=87.7

Q ss_pred             ccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHH
Q psy10189        237 HDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYH  313 (376)
Q Consensus       237 ~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y  313 (376)
                      ++||||.|+|++||++|..  .++|+||||+|++.+|.|+|||+.++.|+||+|..+++|.|++. ...|+||.+||+||
T Consensus         2 ~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y   81 (100)
T 1rja_A            2 EPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYH   81 (100)
T ss_dssp             CCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHHH
T ss_pred             CCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHHH
Confidence            5899999999999999986  68999999999888899999999999999999998878889988 58999999999999


Q ss_pred             hhCCcCCcceeeeCCCCCcc
Q psy10189        314 RTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       314 ~~~~~~~~~~~~L~~p~~~~  333 (376)
                      +.++++.  .+.|+.|++++
T Consensus        82 ~~~~~~l--~~~L~~p~~~~   99 (100)
T 1rja_A           82 RAQSLSH--GLRLAAPCRKH   99 (100)
T ss_dssp             HHCCTTS--SSCCCSBCCCC
T ss_pred             hhCCCCC--CCCCCccCCCC
Confidence            9999877  78899998764

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.92  E-value=1e-24  Score=213.84  Aligned_cols=138  Identities=38%  Similarity=0.714  Sum_probs=122.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccc----cccccccccCCHHHHHHHhc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM----KNHDWYYGRITRADAERLLS   75 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~----~~~~w~~g~isr~~ae~~l~   75 (376)
                      .|+|+|||++++++||+|++||+|.|+++ .+++||.++.  +|++||||+|||+.    ...+||||.|+|++|+.+|.
T Consensus        87 ~~~alyd~~~~~~~el~~~~gd~i~v~~~-~~~~ww~~~~~~~g~~G~~P~~yv~~~~~l~~~~wy~g~i~r~~ae~~L~  165 (535)
T 2h8h_A           87 TFVALYDYESRTETDLSFKKGERLQIVNN-TEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLL  165 (535)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSSEEEEEETTTCCEEEEEGGGEEETTSGGGSTTBCCSCCHHHHHHHHT
T ss_pred             EEEEccccCCcCCCcCCcCCCCEEEEEEe-cCCCceEEEECCCCcceEecchhhcccccccccceeccccCHHHHHHHhc
Confidence            38999999999999999999999999997 5678999996  89999999999984    34789999999999999998


Q ss_pred             C--CCCccEEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEece-eecchhhhHhhhhccccc
Q psy10189         76 N--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHRTASVS  140 (376)
Q Consensus        76 ~--~~~G~flvR~s~~~~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~~~~~~~~  140 (376)
                      .  ..+|+||||.|++.++.|+||+..     ++.++|++|....+|.|++... .|.++.+|+++|......
T Consensus       166 ~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~i~~~~~F~SL~eLv~~y~~~~~~  238 (535)
T 2h8h_A          166 NAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADG  238 (535)
T ss_dssp             CTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-CCSCEEEETTEEESSHHHHHHHHHHCCTT
T ss_pred             cCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcCCCcEEeeccccccChHHhheeeccccCc
Confidence            7  467999999999999999999986     5689999999878888888765 599999999999876543

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.92  E-value=5.4e-25  Score=164.04  Aligned_cols=94  Identities=67%  Similarity=1.144  Sum_probs=85.7

Q ss_pred             cccccccccChHHHHHhhcCCC-CCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHHh
Q psy10189        236 NHDWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHR  314 (376)
Q Consensus       236 ~~~w~~g~i~r~~ae~~L~~~~-~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y~  314 (376)
                      .++||||.|+|++||++|...+ +|+||||+|++.+|.|+|||+.++.|+||+|..+++|.|++.+..|+||.+||+||+
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~   81 (96)
T 1jyr_A            2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHR   81 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTT
T ss_pred             CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHh
Confidence            3689999999999999998765 999999999988999999999999999999998888899999999999999999999


Q ss_pred             hCCcCCcceeeeCCC
Q psy10189        315 TASVSRSQDVKLRDM  329 (376)
Q Consensus       315 ~~~~~~~~~~~L~~p  329 (376)
                      .+++.....+.|+.|
T Consensus        82 ~~~l~~~~~~~L~~~   96 (96)
T 1jyr_A           82 STSVSRNQQIFLRDI   96 (96)
T ss_dssp             SSCSCSSSCCCCBCC
T ss_pred             hCCCCCCCceEecCC
Confidence            999887666666654

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=4.9e-25  Score=170.84  Aligned_cols=99  Identities=25%  Similarity=0.542  Sum_probs=90.7

Q ss_pred             ccccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHH
Q psy10189        233 EMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVE  311 (376)
Q Consensus       233 ~~~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~  311 (376)
                      .+..++||||.|+|++||++|.. .++|+||||.|++.++.|+|||+.++.|+||+|...++|.|++++..|+||.+||+
T Consensus        12 ~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LI~   91 (119)
T 2gsb_A           12 PHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIID   91 (119)
T ss_dssp             SGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTTEEEESSCCBSCHHHHHH
T ss_pred             ccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCCCEEECCcccCCHHHHHH
Confidence            37888999999999999999985 47899999999988999999999999999999998888999999999999999999


Q ss_pred             HHhhCCcCCcceeeeCCCCCcc
Q psy10189        312 YHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       312 ~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      ||+.+++..  .+.|++|+++.
T Consensus        92 ~y~~~~l~~--~~~L~~Pv~~~  111 (119)
T 2gsb_A           92 HYRKEQIVE--GYYLKEPVPMQ  111 (119)
T ss_dssp             HHTTSCSBT--TBCCCCCCCCC
T ss_pred             HHhhCccCC--CCEeCCccCCC
Confidence            999998875  68899998764

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.92  E-value=6.1e-25  Score=166.72  Aligned_cols=96  Identities=24%  Similarity=0.375  Sum_probs=86.7

Q ss_pred             ccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe------ccccCCHH
Q psy10189        235 KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW------VVKFNSLN  307 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~------~~~f~sl~  307 (376)
                      +.++||||.|+|++||++|.. .++|+||||+|++.++.|+|||+.++.|+||+|....+|.|+++      ...|+||.
T Consensus         2 ~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~   81 (104)
T 1d4t_A            2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK   81 (104)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSHH
T ss_pred             CCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCCeEEEeccCCCCCcccCCHH
Confidence            567999999999999999973 48999999999888999999999999999999998888899997      48999999


Q ss_pred             HHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        308 ELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       308 ~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      +||+||+.++.+.  .+.|+.|+++
T Consensus        82 ~LV~~y~~~~~~l--~~~L~~P~~r  104 (104)
T 1d4t_A           82 NLISAFQKPDQGI--VIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHTSSSSSS--SSCCCEECCC
T ss_pred             HHHHHHhhCCCCC--eEECCCcCCC
Confidence            9999999998776  7788888764

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=1.9e-25  Score=173.24  Aligned_cols=98  Identities=36%  Similarity=0.616  Sum_probs=89.6

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|++||++|.+.++|+||||+|++.++.|+|||+.++.|+||+|..+.+|.|++. ...|+||.+||+|
T Consensus        13 l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~   92 (119)
T 2ecd_A           13 LEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTLAELVHH   92 (119)
T ss_dssp             CCCSSSEEEECCHHHHHHHHHTSCTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSSCCCCCSSCCCSSHHHHHHH
T ss_pred             cccCccccCCCCHHHHHHHhcCCCCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCCCEEEcCCCcCCCHHHHHHH
Confidence            678899999999999999999889999999999988999999999999999999998778888886 6899999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCcc
Q psy10189        313 HRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      |+.++..+  .+.|+.|+++.
T Consensus        93 y~~~~~gl--~~~L~~P~~~~  111 (119)
T 2ecd_A           93 HSTVADGL--VTTLHYPAPKC  111 (119)
T ss_dssp             HHHCCTTS--SSCCCBCCSSC
T ss_pred             HhhCCCCC--ceECCCccCCC
Confidence            99997766  77899998765

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.92  E-value=7.5e-25  Score=185.18  Aligned_cols=127  Identities=20%  Similarity=0.409  Sum_probs=106.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCCcc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGA   81 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~   81 (376)
                      .|+|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+.....    .                 
T Consensus        13 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~-~~~gWw~g~~~g~~G~~P~~yv~~~~~~----~-----------------   70 (193)
T 1ng2_A           13 TYRAIADYEKTSGSEMALSTGDVVEVVEK-SESGWWFCQMKAKRGWIPASFLEPLDSP----D-----------------   70 (193)
T ss_dssp             EEECSSCBCCSSTTCCCBCTTCEEEEEEC-CTTSCCEEEECCCCCCCCGGGCCCSSCS----S-----------------
T ss_pred             EEEEcCCcCCCCCCcCCCCCCCEEEEEEe-cCCCeEEEEECCeeeEechheEEeeccc----c-----------------
Confidence            58999999999999999999999999997 5678999999999999999999864321    0                 


Q ss_pred             EEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccccccccccCCCchhhhhhhcc
Q psy10189         82 FLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY  161 (376)
Q Consensus        82 flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  161 (376)
                          .+..                                                          ..|......++|+|
T Consensus        71 ----~~~~----------------------------------------------------------~~p~~~~~~~~al~   88 (193)
T 1ng2_A           71 ----ETED----------------------------------------------------------PEPNYAGEPYVAIK   88 (193)
T ss_dssp             ----CSCC----------------------------------------------------------CCCCTTCEEEEESS
T ss_pred             ----ccch----------------------------------------------------------hhccccceeeeecc
Confidence                0000                                                          00000123578999


Q ss_pred             cCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        162 DFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       162 ~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      +|.++.++||+|.+||+|.|+.+.+++||.|+.+|+.||||++||+.++.+
T Consensus        89 dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  139 (193)
T 1ng2_A           89 AYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQD  139 (193)
T ss_dssp             CBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTSC
T ss_pred             ccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCCC
Confidence            999999999999999999999999999999999999999999999988653

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.92  E-value=7.7e-25  Score=169.08  Aligned_cols=101  Identities=67%  Similarity=1.121  Sum_probs=91.9

Q ss_pred             ccccccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHH
Q psy10189        233 EMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVE  311 (376)
Q Consensus       233 ~~~~~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~  311 (376)
                      +++.++||||.|+|++||++|... ++|+||||+|++.+|.|+|||+.++.|+||+|.++.+|.|++++..|+||.+||+
T Consensus         2 ~L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~eLV~   81 (117)
T 3ov1_A            2 EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVD   81 (117)
T ss_dssp             -CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHH
T ss_pred             CcccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCCeEEECCCCcCCHHHHHH
Confidence            367789999999999999999874 6899999999989999999999999999999998888999999999999999999


Q ss_pred             HHhhCCcCCcceeeeCCCCCcc
Q psy10189        312 YHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       312 ~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      ||+.+++.....+.|+.|++.+
T Consensus        82 ~y~~~~l~~~~~~~L~~~~~~P  103 (117)
T 3ov1_A           82 YHRSTSVSRNQQIFLRDIEQVP  103 (117)
T ss_dssp             HTTTSCSCSSSCCCCBCCCCCC
T ss_pred             HHhhCCCCCCCceEecCCCcCC
Confidence            9999999887788888877654

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=99.92  E-value=7.8e-25  Score=164.31  Aligned_cols=96  Identities=28%  Similarity=0.449  Sum_probs=87.1

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|++|+++|...++|+||||+|++.++.|+|||+.++.|+||+|... +|.|++. +..|+||.+||+|
T Consensus         2 L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~~Lv~~   80 (98)
T 3us4_A            2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHR-DGHLTIDEAVFFCNLMDMVEH   80 (98)
T ss_dssp             CTTCTTBCCSCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEE-TTEEESSSSSEESSHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHccCCCCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEe-CCEEEECCCCccCCHHHHHHH
Confidence            4678999999999999999998889999999999899999999999999999999874 5678876 5899999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCc
Q psy10189        313 HRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~  332 (376)
                      |+.++..+  .++|+.|+|+
T Consensus        81 y~~~~~~l--~~~L~~P~pk   98 (98)
T 3us4_A           81 YSKDKGAI--CTKLVRPKRK   98 (98)
T ss_dssp             HHHCCTTS--SSCCCSBCCC
T ss_pred             hhhCCCCC--eEcCCccCCC
Confidence            99999776  7889999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.91  E-value=1.7e-24  Score=208.00  Aligned_cols=138  Identities=41%  Similarity=0.729  Sum_probs=121.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC-Cccceecccccccc----------ccccccccCCHHHH
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMK----------NHDWYYGRITRADA   70 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~-g~~G~vP~nyve~~----------~~~w~~g~isr~~a   70 (376)
                      .|+|+|||+|++++||+|++||+|.|+++..+++||.++.. |++|+||+|||+..          ..+||||.|+|.+|
T Consensus        13 ~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~wyhg~i~r~~a   92 (450)
T 1k9a_A           13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQA   92 (450)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCCCCCTTEESCTTBCTTCCHHHH
T ss_pred             EEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccccccccccccccccccCcCHHHh
Confidence            58999999999999999999999999997556789999965 99999999999853          35899999999999


Q ss_pred             HHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHhhhhccccc
Q psy10189         71 ERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHRTASVS  140 (376)
Q Consensus        71 e~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~~~~~~~~  140 (376)
                      +.+|....+|+||||.|++.+|.|+||+..++.++|++|.. ..+.+.+... .|.++.+++.+|......
T Consensus        93 e~~L~~~~~G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~~~~~~i~~~~~F~sl~eLv~~y~~~~~~  162 (450)
T 1k9a_A           93 ERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY-HASKLSIDEEVYFENLMQLVEHYTTDADG  162 (450)
T ss_dssp             HHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEE-ETTEEESSSSSCBSSHHHHHHHHHHCCTT
T ss_pred             hhhhccCCCceEEEEecCCCCCceEEEEEeCCeeeEEEEEe-cCCceEeccccccccHHHHHhhhcccccc
Confidence            99998888899999999999999999999999999999964 4556666655 499999999999876543

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.91  E-value=8.5e-25  Score=168.16  Aligned_cols=108  Identities=26%  Similarity=0.361  Sum_probs=94.8

Q ss_pred             CCCCCccccccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEecc
Q psy10189        222 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV  301 (376)
Q Consensus       222 ~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~  301 (376)
                      |.+|.+|.....+..++||||.|+|++||++|..  +|+||||+|++.+ .|+|||+.++.|+||+|... +|.|.+++.
T Consensus         1 ~~~g~vp~~~~~l~~~~WyhG~isR~eAe~lL~~--~G~FLVR~S~~~~-~y~LSv~~~~~v~H~~I~~~-~g~~~~~~~   76 (114)
T 1wqu_A            1 GSSGSSGEVQKPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSL-DNLYRLEGE   76 (114)
T ss_dssp             CCCCCCCGGGSCGGGCTTEEESCCHHHHHTTCCS--TTEEEEEECSSSC-CEEEEEEETTEEEEEECEEC-SSSEESSSC
T ss_pred             CCccccCCcccccccCCcEeeCCCHHHHHHHhcc--CCeEEEEEcCCCC-CEEEEEEECCEEEEEEEEec-CCEEEECCC
Confidence            4678888888889999999999999999999984  9999999998776 99999999999999999875 578888899


Q ss_pred             ccCCHHHHHHHHhhCCcCC--cceeeeCCCCCcc
Q psy10189        302 KFNSLNELVEYHRTASVSR--SQDVKLRDMVPEE  333 (376)
Q Consensus       302 ~f~sl~~lv~~y~~~~~~~--~~~~~L~~p~~~~  333 (376)
                      .|+||.+||+||+.+.++.  ...+.|++|++++
T Consensus        77 ~F~sl~~LV~~y~~~~~~~~~~~~~~L~~Pv~r~  110 (114)
T 1wqu_A           77 GFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPSG  110 (114)
T ss_dssp             CBSSHHHHHHHHHHHCCCSCTTTCCCCCEECCSC
T ss_pred             CCCCHHHHHHHHHHCCCCcCCCCCcEECcccCCC
Confidence            9999999999999886554  3578899998764

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.91  E-value=1.7e-24  Score=166.53  Aligned_cols=98  Identities=38%  Similarity=0.625  Sum_probs=90.0

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|++||++|.+.++|+||||.|++.++.|+|||+.++.|+||+|....+|.|++. +..|+||.+||+|
T Consensus         2 L~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~   81 (112)
T 3k2m_A            2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH   81 (112)
T ss_dssp             GGGSTTEEESCCHHHHHHHTTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHHH
T ss_pred             CccCcceeeCCCHHHHHHHhccCCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHHH
Confidence            567899999999999999999889999999999989999999999999999999998888888886 6899999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCcc
Q psy10189        313 HRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      |+.++..+  .++|+.|+++.
T Consensus        82 y~~~~~~l--~~~L~~P~~~~  100 (112)
T 3k2m_A           82 HSTVADGL--ITTLHYPAPKR  100 (112)
T ss_dssp             HHHCCTTS--SSCCCEECCCC
T ss_pred             HhhCCCCC--ccCCCCCCCCC
Confidence            99997766  77899998764

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.85  E-value=2.3e-26  Score=208.27  Aligned_cols=124  Identities=27%  Similarity=0.504  Sum_probs=112.4

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  313 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y  313 (376)
                      ++.++||||.|+|.+|+++|...++|+||||.|++.+|.|+|||+.++.|+||+|.+..+|.|++++..|+||.+||+||
T Consensus         9 ~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~Lv~~y   88 (303)
T 2lqn_A            9 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFY   88 (303)
Confidence            67889999999999999999988999999999998999999999999999999999877888999999999999999999


Q ss_pred             hhCCcCCcceeeeCCCCCcc--------------------ceEEEeccCCCCCCCCccccccceeee
Q psy10189        314 RTASVSRSQDVKLRDMVPEE--------------------CLVQALYDFTPQEPGELEFRRDLKIKR  360 (376)
Q Consensus       314 ~~~~~~~~~~~~L~~p~~~~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~  360 (376)
                      +++++.   .+.|++|+++.                    ..++|+|+|.+.+.+||+|++|++|.-
T Consensus        89 ~~~~~~---~~~L~~P~~r~~~~~~~~~~~p~~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v  152 (303)
T 2lqn_A           89 KIHYLD---TTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVI  152 (303)
Confidence            999882   56788877652                    457899999999999999999988765

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.91  E-value=6.8e-25  Score=165.51  Aligned_cols=97  Identities=39%  Similarity=0.587  Sum_probs=85.1

Q ss_pred             cccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|++||++|. ..++|+||||+|++.++.|+|||+.++.|+||+|. ..+|.|++++..|+||.+||+|
T Consensus         2 p~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~-~~~g~~~l~~~~F~sl~~LV~~   80 (102)
T 2cia_A            2 PLGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQ-LVDNVYCIGQRRFHTMDELVEH   80 (102)
T ss_dssp             ---CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEE-EETTEEEETTEEESSHHHHHHH
T ss_pred             CcCCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEE-ecCCEEEECCcCcCCHHHHHHH
Confidence            466799999999999999995 56899999999998899999999999999999998 5678899999999999999999


Q ss_pred             HhhCCcCCc---ceeeeCCCCC
Q psy10189        313 HRTASVSRS---QDVKLRDMVP  331 (376)
Q Consensus       313 y~~~~~~~~---~~~~L~~p~~  331 (376)
                      |+.+++...   ..+.|++|+|
T Consensus        81 y~~~~l~~~~~~~~~~L~~Pip  102 (102)
T 2cia_A           81 YKKAPIFTSEHGEKLYLVRALQ  102 (102)
T ss_dssp             HHHSCSEECTTSCEECCCEECC
T ss_pred             HhhCccccCCCCceEEeCCCCC
Confidence            999998753   4678888875

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.91  E-value=1.4e-24  Score=166.27  Aligned_cols=98  Identities=24%  Similarity=0.486  Sum_probs=87.6

Q ss_pred             cccccccccccChHHHHHhhcCC---CCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNK---HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~---~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv  310 (376)
                      +..++||||.|+|++||++|...   ++|+||||+|++.+|.|+|||+.++.|+||+|..+.+|.|++++..|+||.+||
T Consensus         6 l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV   85 (111)
T 2hdv_A            6 LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQSIFDML   85 (111)
T ss_dssp             GGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTCCEEETTEEESSHHHHH
T ss_pred             cccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEeCCceeCCHHHHH
Confidence            67889999999999999999854   899999999998999999999999999999999888899999989999999999


Q ss_pred             HHHhhCCcCCc----ceeeeCCCCC
Q psy10189        311 EYHRTASVSRS----QDVKLRDMVP  331 (376)
Q Consensus       311 ~~y~~~~~~~~----~~~~L~~p~~  331 (376)
                      +||+.+++...    ..+.|+.|||
T Consensus        86 ~~y~~~~l~~~~~~~~~v~L~~~v~  110 (111)
T 2hdv_A           86 EHFRVHPIPLESGGSSDVVLVSYVP  110 (111)
T ss_dssp             HHHTTSCCC-------CCCCCEECC
T ss_pred             HHHhhCCcccccCCccceEcccccc
Confidence            99999998873    4677887775

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.91  E-value=2.5e-24  Score=163.82  Aligned_cols=96  Identities=35%  Similarity=0.571  Sum_probs=86.2

Q ss_pred             ccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEe-ccccCCH
Q psy10189        235 KNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLW-VVKFNSL  306 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~-~~~f~sl  306 (376)
                      +.++||||.|+|++||++|..  .++|+||||.|++.+|.|+|||+.     ++.|+||+|...++|.|++. ...|+||
T Consensus         2 ~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl   81 (105)
T 1lkk_A            2 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGL   81 (105)
T ss_dssp             CCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSH
T ss_pred             CcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCCH
Confidence            467999999999999999973  589999999998889999999998     68999999998878889887 5899999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      .+||+||+.++..+  .++|+.|+++
T Consensus        82 ~~LI~~y~~~~~~l--~~~L~~P~~~  105 (105)
T 1lkk_A           82 HELVRHYTNASDGL--CTRLSRPCQT  105 (105)
T ss_dssp             HHHHHHHHHCCTTS--SSCCCSBCCC
T ss_pred             HHHHHHHhhCCCCC--ccCCcCcCCC
Confidence            99999999998877  7789998864

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.91  E-value=1.5e-24  Score=172.34  Aligned_cols=99  Identities=32%  Similarity=0.568  Sum_probs=88.3

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      +..++||||.|+|++||++|...++|+||||.|++.++.|+|||+.++.|+||+|. ..+|.|++. ...|+||.+||+|
T Consensus        23 ~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~-~~~g~~~l~~~~~F~sl~eLV~~  101 (138)
T 2crh_A           23 LSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TAEGLYRITEKKAFRGLTELVEF  101 (138)
T ss_dssp             GGGSSSBCCSCCHHHHHHHTTTSCTTEEEEECCSSTTCCCEEEEEETTEEEEEECE-EETTEEESSTTCCBSSHHHHHHH
T ss_pred             CCcCCcccCCCCHHHHHHHhcCCCCCEEEEEECCCCCCCEEEEEEECCeEEEEEEE-eCCCEEEECCCCccCCHHHHHHH
Confidence            36679999999999999999988999999999988889999999999999999995 667888887 5899999999999


Q ss_pred             HhhCCcCC---cceeeeCCCCCcc
Q psy10189        313 HRTASVSR---SQDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~---~~~~~L~~p~~~~  333 (376)
                      |+.+++..   ...++|+.|++++
T Consensus       102 y~~~~l~~~~~~l~~~L~~Pv~~~  125 (138)
T 2crh_A          102 YQQNSLKDCFKSLDTTLQFPFKEP  125 (138)
T ss_dssp             HTTSCGGGTCTTCCCCCCEESSCC
T ss_pred             HHhCccccccCCcCcccCCccCCC
Confidence            99999764   2467899998764

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.91  E-value=3.2e-24  Score=166.34  Aligned_cols=106  Identities=31%  Similarity=0.473  Sum_probs=91.9

Q ss_pred             CccccccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe--cccc
Q psy10189        226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW--VVKF  303 (376)
Q Consensus       226 ~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~--~~~f  303 (376)
                      ..+.....+..++||||.|+|++||++|.+.++|+||||.|++..+ |+|||+.++.|+||+|....+|.|++.  ...|
T Consensus         5 ~s~~~~~~~~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~~F   83 (119)
T 2cs0_A            5 SSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAH   83 (119)
T ss_dssp             CCCSCCCSSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCCB
T ss_pred             cChhhhccccCCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCCcEEEecCCCcC
Confidence            3334444467889999999999999999988999999999988888 999999999999999998888888885  4899


Q ss_pred             CCHHHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        304 NSLNELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       304 ~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      +||.+||+||+.+++... .+.|++|+++.
T Consensus        84 ~sl~eLV~~y~~~~l~~~-~~~L~~P~~~~  112 (119)
T 2cs0_A           84 TSLDALVTFHQQKPIEPR-RELLTQPCRQK  112 (119)
T ss_dssp             SSHHHHHHHHTTSCCSSC-CCCCCSBCCCS
T ss_pred             CCHHHHHHHHhhCcCCCC-CCEeCccCCCC
Confidence            999999999999988732 47899998765

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.91  E-value=2.3e-24  Score=166.49  Aligned_cols=98  Identities=34%  Similarity=0.509  Sum_probs=88.3

Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEe----CCeeEEEEEEEcCCCcEEEe-ccccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC----SDGVQHFKVLRDSSGKFFLW-VVKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~----~~~v~h~~I~~~~~~~~~~~-~~~f~sl  306 (376)
                      ++.++||||.|+|++||++|..  .++|+||||+|++.+|.|+|||+.    ++.|+||+|...++|.|++. ...|+||
T Consensus         9 l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl   88 (114)
T 1blj_A            9 LEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTL   88 (114)
T ss_dssp             SCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESSH
T ss_pred             cccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCcccCCH
Confidence            6778999999999999999974  589999999998889999999998    68999999998777888887 5899999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      .+||+||+.++..+  .++|+.|++++
T Consensus        89 ~~LV~~y~~~~~~l--~~~L~~p~~~~  113 (114)
T 1blj_A           89 QALVQHYSKKGDGL--CQKLTLPCVNL  113 (114)
T ss_dssp             HHHHHHHHHCCSSS--SSCCCCCSCCC
T ss_pred             HHHHHHhhhCCCCC--ceecCccCCCC
Confidence            99999999998776  78899998764

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=2.8e-24  Score=166.40  Aligned_cols=104  Identities=31%  Similarity=0.502  Sum_probs=91.3

Q ss_pred             ccccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHH
Q psy10189        229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLN  307 (376)
Q Consensus       229 ~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~  307 (376)
                      +....+..++||||.|+|++||++|...++|+||||.|++.++.|+|||+.++.|+||+|... +|.|++. ...|+||.
T Consensus         8 ~~~~~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~sl~   86 (118)
T 2dlz_A            8 SREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK-DNWIHITEAKKFDSLL   86 (118)
T ss_dssp             SCCCCGGGSTTEEESCCHHHHHHHHHHSCTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEE-TTEEESTTSCCBSSHH
T ss_pred             CCccccccCCceecCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEc-CCEEEEeCCcccCCHH
Confidence            344457889999999999999999998899999999998889999999999999999999885 6778887 58999999


Q ss_pred             HHHHHHhhCCcCCc---ceeeeCCCCCcc
Q psy10189        308 ELVEYHRTASVSRS---QDVKLRDMVPEE  333 (376)
Q Consensus       308 ~lv~~y~~~~~~~~---~~~~L~~p~~~~  333 (376)
                      +||+||+.+++...   ..++|++|++++
T Consensus        87 ~LV~~y~~~~l~~~~~gl~~~L~~Pv~~p  115 (118)
T 2dlz_A           87 ELVEYYQCHSLKESFKQLDTTLKYPYSGP  115 (118)
T ss_dssp             HHHHHHTTSCTTTTCTTCCCCCCBCCSCC
T ss_pred             HHHHHHhhCcccccCCCcccEeCCcCCCC
Confidence            99999999988542   357899998764

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.91  E-value=3.6e-24  Score=163.06  Aligned_cols=97  Identities=32%  Similarity=0.502  Sum_probs=88.6

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      +..++||||.|+|++||++|...++|+||||.|++.++.|+|||+.++.|+||+|... +|.|++. +..|+||.+||+|
T Consensus         5 L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~sl~~Lv~~   83 (106)
T 3eaz_A            5 LSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYH-ASKLSIDEEVYFENLMQLVEH   83 (106)
T ss_dssp             GGGCTTBCCSCCHHHHHHHTCSCCTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEE-TTEEESSSSSCBSSHHHHHHH
T ss_pred             cccCCCcCCCCCHHHHHHHhCCCCCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEec-CCEEEECCCCccCCHHHHHHH
Confidence            6788999999999999999998899999999999899999999999999999999865 6788887 5899999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCcc
Q psy10189        313 HRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      |+.++..+  .++|+.|+++.
T Consensus        84 y~~~~~gl--~~~L~~P~~~~  102 (106)
T 3eaz_A           84 YTSDADGL--CTRLIKPKVME  102 (106)
T ss_dssp             HHHCCTTS--SSCCCEECCCC
T ss_pred             HhhCCCCC--CeecCCcCCCC
Confidence            99998776  77899998764

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.91  E-value=3.2e-24  Score=166.57  Aligned_cols=98  Identities=32%  Similarity=0.490  Sum_probs=89.2

Q ss_pred             cccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec------cccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV------VKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~------~~f~sl  306 (376)
                      +..++||||.|+|++|+++|.. .++|+||||.|++.++.|+|||+.++.|+||+|..+.+|.|++.+      ..|+||
T Consensus         7 ~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl   86 (119)
T 2ysx_A            7 GMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFTKL   86 (119)
T ss_dssp             SCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTSCEEECCSCSSSCCCBSSH
T ss_pred             CCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeccCCcCCcccCCH
Confidence            5678999999999999999986 789999999999889999999999999999999988888999984      689999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      .+||+||+.+++.+  .+.|+.|+++.
T Consensus        87 ~eLV~~y~~~~~~l--~~~L~~P~~~~  111 (119)
T 2ysx_A           87 DQLIEFYKKENMGL--VTHLQYPVPLE  111 (119)
T ss_dssp             HHHHHHTTSSSSSS--SSCCCEECCCC
T ss_pred             HHHHHHHhhCCCCC--CeECCCcCCCC
Confidence            99999999998876  77899998764

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.91  E-value=2.5e-24  Score=163.09  Aligned_cols=95  Identities=29%  Similarity=0.443  Sum_probs=85.3

Q ss_pred             cccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe------ccccCCHHH
Q psy10189        236 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW------VVKFNSLNE  308 (376)
Q Consensus       236 ~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~------~~~f~sl~~  308 (376)
                      .++||||.|+|++||++|.. .++|+||||+|++.++.|+|||+.++.|+||+|...++|.|+++      ...|+||.+
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~   81 (103)
T 1i3z_A            2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCCeEEEeccCCCCCcccCCHHH
Confidence            46899999999999999974 68999999999888999999999999999999998888999997      479999999


Q ss_pred             HHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        309 LVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       309 lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ||+||+.++.+.  .+.|+.|+++
T Consensus        82 LV~~y~~~~~~l--~~~L~~P~~R  103 (103)
T 1i3z_A           82 LVSKYGKPGQGL--VVHLSNPIMR  103 (103)
T ss_dssp             HHHHTTSSSSSS--SSCCCEECC-
T ss_pred             HHHHHhhCCCCC--eEEcCCccCC
Confidence            999999988665  7788888764

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.90  E-value=1.7e-26  Score=204.89  Aligned_cols=166  Identities=23%  Similarity=0.276  Sum_probs=120.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEE---EecCCCcceeeee---------------CCeeeeee--cccccccccCcc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITV---TDRSDQHWWHGEI---------------GARKGLFP--ATYILNMEDDMN  214 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v---~~~~~~~w~~~~~---------------~~~~G~~P--~~~v~~~~~~~~  214 (376)
                      ..+.|||+|.++..++|+|++|+.+.|   +...+++||.++.               .+..+.+|  .+++.+...   
T Consensus       104 ~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k~rd~~~~wl~~~gl~~~~~~~~~~~~~~~~~~~~---  180 (302)
T 2y3a_B          104 SRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQRKINEWLGIKNETEDQYS---  180 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCSCC----------------------------
T ss_pred             HHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhhcccchhHHHHhcCCCcccccccccccCCCCCccc---
Confidence            468899999999999999999999888   5445556664432               23333333  233322110   


Q ss_pred             hhhhccCCCCCCccccccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC
Q psy10189        215 WYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG  294 (376)
Q Consensus       215 ~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~  294 (376)
                           +.  +  .+.+...+...+||||.|+|.+|+.+|.+.++|+||||.| +.+|.|+|||+.++.|+||+|...++|
T Consensus       181 -----l~--~--~~~~~~~l~~~~WyhG~IsR~eAE~lL~~~~~GtFLVR~S-s~~g~y~LSv~~~~~V~H~rI~~~~~g  250 (302)
T 2y3a_B          181 -----LM--E--DEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATG  250 (302)
T ss_dssp             ----------------CGGGSSTTTBCCSCCHHHHHHHHTTSCTTBEEBCCC-SSTTCEEEEEECSSSEEEEEEEEETTE
T ss_pred             -----cc--c--cccccccccCCCccCCCCCHHHHHHHhcCCCCCcEEEEec-cCCCceEEEEEeCCeeEEEEEEECCCc
Confidence                 00  0  0112234678899999999999999998889999999999 889999999999999999999988777


Q ss_pred             cEEEe-ccccCCHHHHHHHHhhCCcCC---cceeeeCCCCCcc
Q psy10189        295 KFFLW-VVKFNSLNELVEYHRTASVSR---SQDVKLRDMVPEE  333 (376)
Q Consensus       295 ~~~~~-~~~f~sl~~lv~~y~~~~~~~---~~~~~L~~p~~~~  333 (376)
                      .++.. ...|+||.+||+||+.+++..   ...++|+.|+++.
T Consensus       251 ~~~~~~~~~F~SL~eLV~~Y~~~~L~~~~~gl~~~L~~Pv~~~  293 (302)
T 2y3a_B          251 FGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAP  293 (302)
T ss_dssp             EESBTTBCCCSSHHHHHHTTSSSCSTTTCSSCCCCCSBCSCCC
T ss_pred             eEEeCCCCCCCCHHHHHHHHHhCCccccCCCCceeeCCccCCC
Confidence            55555 379999999999999988664   2578899998765

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.90  E-value=3.8e-24  Score=166.30  Aligned_cols=100  Identities=29%  Similarity=0.506  Sum_probs=87.8

Q ss_pred             ccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHH
Q psy10189        233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVE  311 (376)
Q Consensus       233 ~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~  311 (376)
                      .+..++||||.|+|++|+++|...++|+||||.|++.++.|+|||+.++.|+||+|...+ +.|++. ...|+||.+||+
T Consensus        18 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~~~~l~~~~~F~sl~eLV~   96 (122)
T 2lnw_A           18 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD-NWIHITEAKKFDSLLELVE   96 (122)
T ss_dssp             CSTTSTTBCCSCCHHHHHHHHHHSCTTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEET-TEEESSSSCCBSSHHHHHH
T ss_pred             CcccCcCCCcCCCHHHHHHHhcCCCCCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcC-CEEEECCCCeECCHHHHHH
Confidence            377889999999999999999888899999999988899999999999999999998754 567666 589999999999


Q ss_pred             HHhhCCcCC---cceeeeCCCCCcc
Q psy10189        312 YHRTASVSR---SQDVKLRDMVPEE  333 (376)
Q Consensus       312 ~y~~~~~~~---~~~~~L~~p~~~~  333 (376)
                      ||+.+++..   ...++|++|++++
T Consensus        97 ~y~~~~l~~~~~~l~~~L~~P~~~p  121 (122)
T 2lnw_A           97 YYQCHSLKESFKQLDTTLKYPYKSR  121 (122)
T ss_dssp             HHHHSCGGGTCTTCCCCCCBCSSSC
T ss_pred             HHhhCcCcccCCCcCeeeCCcCCCC
Confidence            999998753   3467899998753

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.90  E-value=2e-23  Score=200.83  Aligned_cols=137  Identities=35%  Similarity=0.644  Sum_probs=122.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccc----cccccccccCCHHHHHHHhc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEM----KNHDWYYGRITRADAERLLS   75 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~----~~~~w~~g~isr~~ae~~l~   75 (376)
                      .|+|+|||+|+.++||+|++||+|.|+++ + ++||.++  .+|++|+||+|||+.    ...+||||.|+|.+|+.+|.
T Consensus        10 ~~~al~~~~~~~~~el~~~~gd~~~v~~~-~-~~W~~~~~~~~g~~G~~P~~yv~~~~~le~~~W~~g~i~r~~ae~~L~   87 (454)
T 1qcf_A           10 IVVALYDYEAIHHEDLSFQKGDQMVVLEE-S-GEWWKARSLATRKEGYIPSNYVARVDSLETEEWFFKGISRKDAERQLL   87 (454)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-C-TTEEEEEETTTCCEEEEEGGGEEETTCGGGSTTEETTCCHHHHHHHHH
T ss_pred             EEEECcccCCcCCCcCcccCCCEEEEEec-C-CCCeEEEECCCCceEEecchhcccccccccccccccccchhhhhhhhh
Confidence            48999999999999999999999999987 3 5799999  789999999999973    45789999999999999996


Q ss_pred             C--CCCccEEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEece-eecchhhhHhhhhccccc
Q psy10189         76 N--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHRTASVS  140 (376)
Q Consensus        76 ~--~~~G~flvR~s~~~~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~~~~~~~~  140 (376)
                      .  ..+|+||||.|++.+|.|+||+..     ++.++|++|....++.|++... .|.++.+++++|......
T Consensus        88 ~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~g~~~i~~~~~F~sl~eLv~~y~~~~~~  160 (454)
T 1qcf_A           88 APGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVDHYKKGNDG  160 (454)
T ss_dssp             STTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBSSHHHHHHHHTSSCTT
T ss_pred             cCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCCCcEEEeCccccCCHHHHHHHHHhccCC
Confidence            5  689999999999999999999998     6789999999888888888765 599999999999876543

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.90  E-value=7.2e-24  Score=162.77  Aligned_cols=99  Identities=30%  Similarity=0.405  Sum_probs=86.8

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|++|+++|.+.++|+||||+| +.++.|+|||+.++.|+||+|...++|.+++. ...|+||.+||+|
T Consensus         7 ~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S-~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~   85 (112)
T 1h9o_A            7 HDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLH   85 (112)
T ss_dssp             GSGGGTBCCSCCHHHHHHHHTTCCTTEEEEEEC-SSTTCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHHHH
T ss_pred             ccCCCcccCCCCHHHHHHHhcCCCCceEEEeec-CCCCCEEEEEEECCEEEEEEEEEcCCceEEeCCCCCcCCHHHHHHH
Confidence            678899999999999999999889999999999 88999999999999999999998877755555 4799999999999


Q ss_pred             HhhCCcCCc---ceeeeCCCCCcc
Q psy10189        313 HRTASVSRS---QDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~---~~~~L~~p~~~~  333 (376)
                      |+.+++...   ..+.|+.|+++.
T Consensus        86 y~~~~l~~~~~gl~~~L~~P~~~~  109 (112)
T 1h9o_A           86 YQHTSLVQHNDSLNVTLAYPVYAQ  109 (112)
T ss_dssp             HHHSCGGGTCTTCCCCCCEETTC-
T ss_pred             HhhCcccccCCCcCeeCCCCcCCC
Confidence            999877652   467899888654

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.90  E-value=6.7e-24  Score=166.79  Aligned_cols=99  Identities=23%  Similarity=0.364  Sum_probs=88.9

Q ss_pred             ccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe------ccccCCHH
Q psy10189        235 KNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW------VVKFNSLN  307 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~------~~~f~sl~  307 (376)
                      +.++||||.|+|++||++|. ..++|+||||+|++.++.|+|||+.++.|+||+|....+|.|+++      ...|+||.
T Consensus         2 ~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~   81 (128)
T 1ka6_A            2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK   81 (128)
T ss_dssp             CCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTSCEEEECSTTSCCCEESSHH
T ss_pred             CCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCCeEEEeecCCCCCCccCCHH
Confidence            56799999999999999997 348999999999888999999999999999999998888899998      48999999


Q ss_pred             HHHHHHhhCCcCCcceeeeCCCCCccce
Q psy10189        308 ELVEYHRTASVSRSQDVKLRDMVPEECL  335 (376)
Q Consensus       308 ~lv~~y~~~~~~~~~~~~L~~p~~~~~~  335 (376)
                      +||+||+.++...  .+.|+.|+++...
T Consensus        82 ~LV~~y~~~~~gl--~~~L~~P~~~~~~  107 (128)
T 1ka6_A           82 NLISAFQKPDQGI--VIPLQYPVEKKSS  107 (128)
T ss_dssp             HHHHHTTSSCSSS--SSCCCSBCCSSCC
T ss_pred             HHHHHHhhCCCCC--cEEcCCcCCCCCC
Confidence            9999999998766  7889999987643

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.90  E-value=7.2e-24  Score=161.93  Aligned_cols=92  Identities=32%  Similarity=0.598  Sum_probs=83.4

Q ss_pred             cccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCC-----------------CcEEEec
Q psy10189        238 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS-----------------GKFFLWV  300 (376)
Q Consensus       238 ~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~-----------------~~~~~~~  300 (376)
                      +||||.|+|++||++|.+.++|+||||+|++.+|.|+|||+.++.|+||+|...++                 +.|.+++
T Consensus         1 ~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~~~l~~   80 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGD   80 (109)
T ss_dssp             CCEETTCCHHHHHHHHTTCCTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCCEEETT
T ss_pred             CccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccEEEeCC
Confidence            69999999999999999889999999999988999999999999999999987653                 4688888


Q ss_pred             cccCCHHHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        301 VKFNSLNELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       301 ~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ..|+||.+||+||+.+++..   +.|++|+++
T Consensus        81 ~~F~sl~~LV~~y~~~~l~~---~~L~~Pv~r  109 (109)
T 1ju5_A           81 QEFDSLPALLEFYKIHYLDT---TTLIEPVSR  109 (109)
T ss_dssp             EEESSHHHHHHHHHHSCSSS---SCCCEESCC
T ss_pred             cccCCHHHHHHHHhhCCCCC---eecCccCCC
Confidence            99999999999999998874   578998864

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=162.02  Aligned_cols=97  Identities=29%  Similarity=0.549  Sum_probs=87.2

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  313 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y  313 (376)
                      +..++||||.|+|++||++|.  ++|+||||+|++.+|.|+|||+.++.|+||+|.. .+|.|.+++..|+||.+||+||
T Consensus        14 ~~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~-~~g~y~~~~~~F~sl~eLV~~y   90 (116)
T 2kk6_A           14 LAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQY-VDNMYRFEGTGFSNIPQLIDHH   90 (116)
T ss_dssp             TTTCTTEEESCCHHHHHHTCC--STTCEEEEECTTCTTCEEEEEEETTEEEEEEEEE-ETTEEESSSCEESCHHHHHHHH
T ss_pred             cccCCCccCCCCHHHHHHHhc--cCCcEEEEECCCCCCcEEEEEEECCeEEEEEEEe-cCCEEEECCCEeCCHHHHHHHH
Confidence            567899999999999999998  5999999999988999999999999999999986 5678888889999999999999


Q ss_pred             hhCCcCC--cceeeeCCCCCcc
Q psy10189        314 RTASVSR--SQDVKLRDMVPEE  333 (376)
Q Consensus       314 ~~~~~~~--~~~~~L~~p~~~~  333 (376)
                      +.++++.  ...+.|++|++++
T Consensus        91 ~~~~~~i~~~~~~~L~~Pv~r~  112 (116)
T 2kk6_A           91 YTTKQVITKKSGVVLLNPIPKD  112 (116)
T ss_dssp             HHTTCCSCTTTTCCCCSCCCCC
T ss_pred             hhCCCCccCCCCCeECcccCCC
Confidence            9997654  3568899999876

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=99.90  E-value=6.8e-24  Score=160.64  Aligned_cols=97  Identities=27%  Similarity=0.531  Sum_probs=86.8

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  313 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y  313 (376)
                      +..++||||.|+|++|+++|.  ++|+||||.|++.+|.|+|||+.++.|+||+|. ..+|.|.+++..|+||.+||+||
T Consensus         4 l~~~~Wyhg~isR~~Ae~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~-~~~g~~~~~~~~F~sl~~LI~~y   80 (104)
T 1mil_A            4 LRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-DPEGVVRTKDHRFESVSHLISYH   80 (104)
T ss_dssp             TTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEB-CTTSSEECSSCEESSHHHHHHHH
T ss_pred             cccCCcCCCCCCHHHHHHHhc--cCCcEEEEeCCCCCCCEEEEEEECCEEEEEEEE-eCCCEEEECCceeCCHHHHHHHH
Confidence            577899999999999999998  599999999988899999999999999999996 56788988899999999999999


Q ss_pred             hhCCcCC---cceeeeCCCCCcc
Q psy10189        314 RTASVSR---SQDVKLRDMVPEE  333 (376)
Q Consensus       314 ~~~~~~~---~~~~~L~~p~~~~  333 (376)
                      +.++++.   ...+.|++|++++
T Consensus        81 ~~~~~p~~~~g~~~~L~~Pv~r~  103 (104)
T 1mil_A           81 MDNHLPIISAGSELCLQQPVERK  103 (104)
T ss_dssp             HHHTCCEEETTEEECCCEECCCC
T ss_pred             hhCCCccccCCceEEeCccCCCC
Confidence            9998753   2467899998764

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.90  E-value=6.7e-24  Score=169.70  Aligned_cols=100  Identities=29%  Similarity=0.449  Sum_probs=86.4

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe----ccccCCHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW----VVKFNSLNEL  309 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~----~~~f~sl~~l  309 (376)
                      +..++||||.|+|++||++|.+.++|+||||+|++.++.|+||++.++.|+||+|... +|.|+++    ...|+||.+|
T Consensus        21 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~~~~F~sl~eL   99 (141)
T 2vif_A           21 LAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHS-NGRFSFYEQPDVEGHTSIVDL   99 (141)
T ss_dssp             HHHHTCBCCSCCHHHHHHHTTTSCTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEE-TTEEEETTCCSCCCBSSHHHH
T ss_pred             hccCCCcccCCCHHHHHHHhcCCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEE-CCEEEEeecCCCCccCCHHHH
Confidence            6778999999999999999998899999999998888999999999999999999986 7889997    5899999999


Q ss_pred             HHHHhhCCc-CC------------cceeeeCCCCCccc
Q psy10189        310 VEYHRTASV-SR------------SQDVKLRDMVPEEC  334 (376)
Q Consensus       310 v~~y~~~~~-~~------------~~~~~L~~p~~~~~  334 (376)
                      |+||+.+++ ++            ...+.|++|+++..
T Consensus       100 I~~y~~~~~~gl~c~l~~~~~~~~~~~v~L~~Pv~R~~  137 (141)
T 2vif_A          100 IEHSIGDSENGAFCYSRSRLPGSATYPVRLTNPVSRFM  137 (141)
T ss_dssp             HHHHHHHHHHTCCEEESCCSTTCCCEECCCCCBCCSSC
T ss_pred             HHHHhhCCCCCcceeccccCCCCCccceEeCCCCcccc
Confidence            999998874 33            13456666666543

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.6e-23  Score=163.56  Aligned_cols=97  Identities=28%  Similarity=0.538  Sum_probs=85.4

Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEc-CCCcEEE--e--ccccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD-SSGKFFL--W--VVKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~-~~~~~~~--~--~~~f~sl  306 (376)
                      +..++||||.|+|++||++|..  .++|+||||+|++.++.|+|||+.++.|+||+|... .+|.|++  +  ...|+||
T Consensus        23 l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~G~~~~~l~~~~~~F~SL  102 (126)
T 2aug_A           23 HRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDL  102 (126)
T ss_dssp             GGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSSCBSSH
T ss_pred             cccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECCCCeEEEEeCCCCCccCCH
Confidence            6788999999999999999985  479999999998889999999999999999999875 3676665  3  4799999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      .+||+||+.++..+  .++|+.|+++
T Consensus       103 ~eLV~~y~~~~~~l--~~~L~~P~~r  126 (126)
T 2aug_A          103 IQLVEFYQLNKGVL--PCKLKHYCAR  126 (126)
T ss_dssp             HHHHHHHTTCCTTS--SSCCCEECCC
T ss_pred             HHHHHHHhhCCCCC--ceecCCCcCC
Confidence            99999999998877  7788888764

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.90  E-value=1.4e-23  Score=159.47  Aligned_cols=97  Identities=28%  Similarity=0.510  Sum_probs=82.5

Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcC-CC--cEEEe--ccccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS-SG--KFFLW--VVKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~-~~--~~~~~--~~~f~sl  306 (376)
                      ++.++||||.|+|++||++|..  .++|+||||+|++.++.|+|||+.++.|+||+|...+ +|  .|.++  ...|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl   81 (105)
T 1nrv_A            2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCCCCEEEEEcCCCcccCCH
Confidence            4567999999999999999974  4899999999988899999999999999999999864 55  35564  4799999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      .+||+||+.++..+  .++|+.|+++
T Consensus        82 ~~LV~~y~~~~~~l--~~~L~~p~~r  105 (105)
T 1nrv_A           82 IQLVDFYQLNKGVL--PCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCCTTS--SSCCCEECCC
T ss_pred             HHHHHHhhhCCCCC--cEeCCCcCCC
Confidence            99999999998876  7788888764

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.90  E-value=2.2e-23  Score=161.78  Aligned_cols=98  Identities=29%  Similarity=0.552  Sum_probs=83.8

Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEc-CCCcEEEe----ccccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD-SSGKFFLW----VVKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~-~~~~~~~~----~~~f~sl  306 (376)
                      +..++||||.|+|++||++|..  .++|+||||+|++.++.|+|||+.++.|+||+|... .+|.+++.    ...|+||
T Consensus        11 ~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl   90 (117)
T 3pqz_A           11 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDL   90 (117)
T ss_dssp             GGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCTTCCEEESSTTSSCBSSH
T ss_pred             cccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCCCCEEEEECCCCcccCCH
Confidence            6788999999999999999974  679999999998888999999999999999999985 56654332    4799999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      .+||+||+.++..+  .++|+.|+++.
T Consensus        91 ~~LV~~y~~~~~~l--~~~L~~P~~~~  115 (117)
T 3pqz_A           91 LQLVEFHQLNRGIL--PCLLRHCCTRV  115 (117)
T ss_dssp             HHHHHHHHHCCTTS--SSCCCEECC--
T ss_pred             HHHHHHHhhCCCCC--cEECCCcCccc
Confidence            99999999998877  77889888653

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.89  E-value=1.5e-23  Score=162.97  Aligned_cols=99  Identities=28%  Similarity=0.563  Sum_probs=88.8

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCC-CCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVE  311 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~-~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~  311 (376)
                      +..++||||.|+|++|+++|.+.++|+||||.|++. ++.|+|||+.++.|+||+|... +|.|++. ...|+||.+||+
T Consensus         8 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~sl~~LI~   86 (120)
T 2iug_A            8 LQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR-DGKYGFSDPLTFSSVVELIN   86 (120)
T ss_dssp             HHTCTTBCCSCCHHHHHHHHTTCCTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEE-TTEEESSSSCCBSSHHHHHH
T ss_pred             cccCCccccCCCHHHHHHHhcCCCCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEc-CCEEEECCCCccCCHHHHHH
Confidence            677899999999999999999889999999999877 8999999999999999999886 6778786 589999999999


Q ss_pred             HHhhCCcCC---cceeeeCCCCCcc
Q psy10189        312 YHRTASVSR---SQDVKLRDMVPEE  333 (376)
Q Consensus       312 ~y~~~~~~~---~~~~~L~~p~~~~  333 (376)
                      ||+.+++..   ...+.|++|+++.
T Consensus        87 ~y~~~~~~~~~~~l~~~L~~Pv~r~  111 (120)
T 2iug_A           87 HYRNESLAQYNPKLDVKLLYPVSKY  111 (120)
T ss_dssp             HHHHSCGGGTCGGGCCCCCEECCTT
T ss_pred             HHHhCccccccCCcceeeCCcCCcC
Confidence            999999864   2578899998764

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.89  E-value=5.5e-24  Score=162.19  Aligned_cols=97  Identities=31%  Similarity=0.609  Sum_probs=86.6

Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEe-ccccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLW-VVKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~-~~~f~s  305 (376)
                      ++.++||||.|+|++||++|..  .++|+||||+|++.+|.|+|||+.     ++.|+||+|...++|.|++. ...|+|
T Consensus         2 l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   81 (106)
T 1aot_F            2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFET   81 (106)
T ss_dssp             CCSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEESS
T ss_pred             CccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccCC
Confidence            4678999999999999999974  589999999998889999999996     68999999998777888887 589999


Q ss_pred             HHHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        306 LNELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       306 l~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      |.+||+||+.++.++  .++|+.|+++
T Consensus        82 l~~LV~~y~~~~~~l--~~~L~~p~~~  106 (106)
T 1aot_F           82 LQQLVQHYSERAAGL--SSRLVVPSHK  106 (106)
T ss_dssp             HHHHHHHHTTCCTTS--SSCSCSSCCC
T ss_pred             HHHHHHHhccCCCCC--cEeecccCCC
Confidence            999999999998776  7789998864

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.89  E-value=1.7e-23  Score=163.40  Aligned_cols=98  Identities=35%  Similarity=0.623  Sum_probs=86.9

Q ss_pred             cccccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-cccCCHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVE  311 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~lv~  311 (376)
                      ++.++||||.|+|++||++|... ++|+||||+|+ .++.|+|||+.++.|+||+|..+ ++.|.++. ..|+||.+||+
T Consensus        16 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~~LV~   93 (124)
T 2eob_A           16 HESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRD-GRHFVLGTSAYFESLVELVS   93 (124)
T ss_dssp             TTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCT-TSSCEEEEEEETTEEEEEEEEES-SSCEESSSSCCBSSHHHHHH
T ss_pred             cCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecC-CCCCEEEEEEeCCeEEEEEEEEC-CCEEEECCCCcCCCHHHHHH
Confidence            67789999999999999999865 68999999998 89999999999999999999874 56788875 45999999999


Q ss_pred             HHhhCCcCCcceeeeCCCCCccce
Q psy10189        312 YHRTASVSRSQDVKLRDMVPEECL  335 (376)
Q Consensus       312 ~y~~~~~~~~~~~~L~~p~~~~~~  335 (376)
                      ||+.+++..  .++|++|+++..+
T Consensus        94 ~y~~~~~~~--~~~L~~P~~~~~~  115 (124)
T 2eob_A           94 YYEKHALYR--KMRLRYPVTPELL  115 (124)
T ss_dssp             HHTTSCSSS--SCCSCEECCHHHH
T ss_pred             HHhhCCCCC--CcCCCCcCCcHHH
Confidence            999999876  7889999877543

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=160.93  Aligned_cols=95  Identities=34%  Similarity=0.628  Sum_probs=84.9

Q ss_pred             cccccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEe------CCeeEEEEEEEcCCCcEEEe-ccccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC------SDGVQHFKVLRDSSGKFFLW-VVKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~------~~~v~h~~I~~~~~~~~~~~-~~~f~s  305 (376)
                      ++.++||||.|+|++||++|... ++|+||||+| +.++.|+|||+.      ++.|+||+|...++|.|++. ...|+|
T Consensus         8 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   86 (110)
T 2ekx_A            8 LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDS   86 (110)
T ss_dssp             TTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEEC-SSTTCEEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSC
T ss_pred             ccCCCeecCCCCHHHHHHHHhccCCCceEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCC
Confidence            67889999999999999999865 8999999999 678999999997      46999999998888888887 589999


Q ss_pred             HHHHHHHHhhCCcCCcceeeeCCCCC
Q psy10189        306 LNELVEYHRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       306 l~~lv~~y~~~~~~~~~~~~L~~p~~  331 (376)
                      |.+||+||+.++..+  .++|+.|++
T Consensus        87 l~~LV~~y~~~~~~l--~~~L~~Pv~  110 (110)
T 2ekx_A           87 IPKLIHYHQHNSAGM--ITRLRHPVS  110 (110)
T ss_dssp             HHHHHHHHHHSCCSS--SCCCCEECC
T ss_pred             HHHHHHHHeeCCCCC--ceecCccCC
Confidence            999999999998766  778888864

>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=5e-23  Score=157.67  Aligned_cols=108  Identities=26%  Similarity=0.519  Sum_probs=97.7

Q ss_pred             CCccceeccccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec
Q psy10189         42 DGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV  121 (376)
Q Consensus        42 ~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~  121 (376)
                      +|++|++|+||+.+...+||||.|+|++|+.+|...++|+||||+|.+.++.|+||+..++.++|++|....+|.|.+.+
T Consensus         3 ~g~~G~ip~n~v~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~   82 (111)
T 2eo3_A            3 SGSSGMSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD   82 (111)
T ss_dssp             CCCCCSCSCCCCTTCHHHHEEESCCHHHHHHHHSSCCTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEETTTEEEETT
T ss_pred             CCccccccccccccCCCCcccCCCCHHHHHHHhcCCCCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECC
Confidence            78999999999999999999999999999999998999999999999999999999999999999999987888899987


Q ss_pred             eeecchhhhHhhhhcccccccccccccCCCc
Q psy10189        122 VKFNSLNELVEYHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       122 ~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~  152 (376)
                      ..|.|+.+||+||+.+++.   ...|..|.|
T Consensus        83 ~~F~sl~~LV~~y~~~~l~---~~~L~~Pv~  110 (111)
T 2eo3_A           83 QEFDHLPALLEFYKIHYLD---TTTLIEPAP  110 (111)
T ss_dssp             CCBSSHHHHHHHHTTSCSS---SSCCCCBCC
T ss_pred             cccCCHHHHHHHHhhCCCC---CccCCCcCc
Confidence            7799999999999998765   244554443

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.89  E-value=3.5e-23  Score=157.41  Aligned_cols=93  Identities=15%  Similarity=0.318  Sum_probs=79.2

Q ss_pred             cccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEe---CCeeEEEEEEEcCCCcEEEec---cccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKC---SDGVQHFKVLRDSSGKFFLWV---VKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~---~~~v~h~~I~~~~~~~~~~~~---~~f~sl  306 (376)
                      +..+|||++.|+|.+||.+|. ++.+|+||||+|++.. .|+|||+.   .+.|+||+|.+. +|.|+|+.   ..|+||
T Consensus        12 l~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~-~G~y~I~~~~~~~F~SL   89 (125)
T 3maz_A           12 LNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSV-GQNYTIELEKPVTLPNL   89 (125)
T ss_dssp             CCCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEE-TTEEEECSSSCEEESSH
T ss_pred             ccCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEe-CCEEEEecCCCcCcCCH
Confidence            566899999999999999886 4568999999997655 89999998   579999999988 68999983   579999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCC
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMV  330 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~  330 (376)
                      .|||+||++++.++  ++.|..|-
T Consensus        90 ~eLV~yY~~~adGl--~~~L~~~c  111 (125)
T 3maz_A           90 FSVIDYFVKETRGN--LRPFIAST  111 (125)
T ss_dssp             HHHHHHHHHHTTTC--CCBCCC--
T ss_pred             HHHHHHHHhCCCcC--cccccccc
Confidence            99999999999998  55566653

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.89  E-value=4.6e-23  Score=160.34  Aligned_cols=98  Identities=30%  Similarity=0.550  Sum_probs=86.9

Q ss_pred             cccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeC------CeeEEEEEE--EcCCCcEEEe-cccc
Q psy10189        234 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS------DGVQHFKVL--RDSSGKFFLW-VVKF  303 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~------~~v~h~~I~--~~~~~~~~~~-~~~f  303 (376)
                      ++.++||||.|+|++|+++|.. .++|+||||.| +.++.|+|||+..      +.|+||+|.  ...+|.|++. ...|
T Consensus         6 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~~~~~~~~~F   84 (118)
T 3s9k_A            6 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVF   84 (118)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEEC-SSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSCCEEEECSCCC
T ss_pred             cccCceecCCCCHHHHHHHHHhcCCCCeEEEEee-CCCCCEEEEEEecccccCCCceEEEEEeEEECCCCCEEECCCccc
Confidence            6788999999999999999975 47999999999 8899999999996      899999994  4567888887 5799


Q ss_pred             CCHHHHHHHHhhCCcCCcceeeeCCCCCccc
Q psy10189        304 NSLNELVEYHRTASVSRSQDVKLRDMVPEEC  334 (376)
Q Consensus       304 ~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~~  334 (376)
                      +||.+||+||+.++..+  .++|+.|++++.
T Consensus        85 ~sl~~LV~~y~~~~~~l--~~~L~~Pv~~~~  113 (118)
T 3s9k_A           85 DSIPLLIQYHQYNGGGL--VTRLRYPVCGSP  113 (118)
T ss_dssp             SCHHHHHHHHHHCCTTS--SSCCCCCCCCST
T ss_pred             CCHHHHHHHheeCCCCC--ccCCCCcCCCCC
Confidence            99999999999999776  788999997653

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=2.6e-23  Score=162.97  Aligned_cols=97  Identities=31%  Similarity=0.562  Sum_probs=86.5

Q ss_pred             cccccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEe------CCeeEEEEEEEcCCCcEEEe-ccccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC------SDGVQHFKVLRDSSGKFFLW-VVKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~------~~~v~h~~I~~~~~~~~~~~-~~~f~s  305 (376)
                      +..++||||.|+|++||++|... ++|+||||.| +.++.|+|||+.      ++.|+||+|....+|.|++. ...|+|
T Consensus        13 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   91 (125)
T 2dm0_A           13 LEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDS-RHLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQS   91 (125)
T ss_dssp             CTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEE-TTEEEEEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSS
T ss_pred             cccCCcccCCCCHHHHHHHHhhcCCCCEEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCC
Confidence            67889999999999999999743 8999999999 678999999998      46999999998888888887 589999


Q ss_pred             HHHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        306 LNELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       306 l~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      |.+||+||+.++..+  .++|+.|+++.
T Consensus        92 l~eLV~~y~~~~~~l--~~~L~~P~~~~  117 (125)
T 2dm0_A           92 IPELIWYHQHNAAGL--MTRLRYPVGLM  117 (125)
T ss_dssp             HHHHHHHHTTCCCSS--SCCCCSBCCSS
T ss_pred             HHHHHHHhhhCCCCC--ccCCCCccCCC
Confidence            999999999998776  78899998764

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.88  E-value=3.1e-23  Score=162.13  Aligned_cols=99  Identities=28%  Similarity=0.542  Sum_probs=87.8

Q ss_pred             cccccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEe------CCeeEEEEEEEcCCCcEEEe-ccccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC------SDGVQHFKVLRDSSGKFFLW-VVKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~------~~~v~h~~I~~~~~~~~~~~-~~~f~s  305 (376)
                      +..++||||.|+|++||++|... ++|+||||.| +.++.|+|||+.      ++.|+||+|...++|.|++. ...|+|
T Consensus         8 l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~S-s~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   86 (125)
T 2ge9_A            8 IEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKHLFST   86 (125)
T ss_dssp             SCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEEC-SSSCCEEEEEEESSSSSTTCEEEEEECEEETTTEEESSTTSCBSS
T ss_pred             cccCCccccCCCHHHHHHHHhhcCCCceEEEEec-CCCCCEEEEEEeccccCCCCeEEEEEEEEcCCCCEEECCCCcCCC
Confidence            67889999999999999999854 8999999999 679999999997      47999999998888888887 489999


Q ss_pred             HHHHHHHHhhCCcCCcceeeeCCCCCccce
Q psy10189        306 LNELVEYHRTASVSRSQDVKLRDMVPEECL  335 (376)
Q Consensus       306 l~~lv~~y~~~~~~~~~~~~L~~p~~~~~~  335 (376)
                      |.+||+||+.++.++  .+.|+.|+++..+
T Consensus        87 l~eLV~~y~~~~~~l--~~~L~~P~~~~~~  114 (125)
T 2ge9_A           87 IPELINYHQHNSAGL--ISRLKYPVSQQNK  114 (125)
T ss_dssp             HHHHHHHHHCCCTTC--SCCSSEECCSSCC
T ss_pred             HHHHHHHhhhCCCCC--ceeCCCccCCCCC
Confidence            999999999998776  7789999876543

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.88  E-value=6.5e-23  Score=163.21  Aligned_cols=100  Identities=32%  Similarity=0.571  Sum_probs=86.5

Q ss_pred             ccccccccccc-ChHHHHHhhcC------CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC---cEEEe-ccc
Q psy10189        234 MKNHDWYYGRI-TRADAERLLSN------KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---KFFLW-VVK  302 (376)
Q Consensus       234 ~~~~~w~~g~i-~r~~ae~~L~~------~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~---~~~~~-~~~  302 (376)
                      +..++||||.| +|++||++|..      .++|+||||+|++.++.|+|||+.++.|+||+|....+|   .|++. ...
T Consensus        19 ~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~gg~~~~~l~~~~~   98 (138)
T 2dx0_A           19 HFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLT   98 (138)
T ss_dssp             TSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSC
T ss_pred             ccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCCCceEEEeCCCCc
Confidence            67789999999 89999999983      689999999998889999999999999999999987543   67776 699


Q ss_pred             cCCHHHHHHHHhhCCcCC-cceeeeCCCCCcc
Q psy10189        303 FNSLNELVEYHRTASVSR-SQDVKLRDMVPEE  333 (376)
Q Consensus       303 f~sl~~lv~~y~~~~~~~-~~~~~L~~p~~~~  333 (376)
                      |+||.+||+||+.+++.. ...+.|++|++++
T Consensus        99 F~sl~eLI~~y~~~~l~~~gl~~~L~~Pv~~~  130 (138)
T 2dx0_A           99 FNSIYALIQHYREAHLRCAEFELRLTDPVPNP  130 (138)
T ss_dssp             BSSHHHHHHHTTTSCCCCGGGSSCCCCBCC--
T ss_pred             CCCHHHHHHHHhhCCCCCCCcccccCccCCCC
Confidence            999999999999998753 2468899998764

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.88  E-value=5.2e-23  Score=164.37  Aligned_cols=99  Identities=26%  Similarity=0.362  Sum_probs=85.9

Q ss_pred             cccccccccccChHHHHHhhc-CCCCCceEEeecCC--CCCceEEEEEeCCeeEEEEEEEcCCCc-EEEe-----ccccC
Q psy10189        234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSES--SPGDFSLSVKCSDGVQHFKVLRDSSGK-FFLW-----VVKFN  304 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~--~~~~~~ls~~~~~~v~h~~I~~~~~~~-~~~~-----~~~f~  304 (376)
                      +..++||||.|+|++||++|. ..++|+||||+|++  .++.|+|||+.++.|+||+|.+..+|. |+++     ...|+
T Consensus        20 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~l~~~~~~~~~F~   99 (141)
T 2eo6_A           20 LLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFG   99 (141)
T ss_dssp             TTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEETTTTEECSSSCCTTCCCBS
T ss_pred             cCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeCCCCEEEEccccCCCCccC
Confidence            678899999999999999996 36799999999986  689999999999999999998766676 6665     48999


Q ss_pred             CHHHHHHHHhhCCcCCcc-------eeeeCCCCCc
Q psy10189        305 SLNELVEYHRTASVSRSQ-------DVKLRDMVPE  332 (376)
Q Consensus       305 sl~~lv~~y~~~~~~~~~-------~~~L~~p~~~  332 (376)
                      ||.+||+||+.+++.++.       .++|++|+..
T Consensus       100 sl~eLV~~y~~~~~~l~~~~~~~~~~~~L~~Pv~~  134 (141)
T 2eo6_A          100 SVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAVKV  134 (141)
T ss_dssp             SHHHHHHHHHHSCCCCCCSSSCCCCCCCCCCBCCC
T ss_pred             CHHHHHHHHhhCCccceecccCCCCceEeCcCccc
Confidence            999999999999988732       5678998854

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.88  E-value=5.7e-23  Score=157.22  Aligned_cols=98  Identities=34%  Similarity=0.521  Sum_probs=82.0

Q ss_pred             cccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVE  311 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~  311 (376)
                      ++.++||||.|+|++||++|.. .++|+||||.|++.++.|+|||+.++.|+||+|... ++.|.+. ...|+||.+||+
T Consensus         4 l~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~~LV~   82 (109)
T 3tkz_A            4 MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT-GDYYDLYGGEKFATLAELVQ   82 (109)
T ss_dssp             ---CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEEC-SSCEESSSSCCBSSHHHHHH
T ss_pred             cccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeC-CCEEEecCCcccCCHHHHHH
Confidence            5778999999999999999975 489999999999889999999999999999999874 5666664 689999999999


Q ss_pred             HHhhCCcCC----cceeeeCCCCCc
Q psy10189        312 YHRTASVSR----SQDVKLRDMVPE  332 (376)
Q Consensus       312 ~y~~~~~~~----~~~~~L~~p~~~  332 (376)
                      ||+.+++..    ...+.|++|+++
T Consensus        83 ~y~~~~~~l~~~~gl~~~L~~Pv~~  107 (109)
T 3tkz_A           83 YYMEHHGQLKEKNGDVIELKYPLNC  107 (109)
T ss_dssp             HHHHSTTSEEETTSCBCCCCEECC-
T ss_pred             HHHhCcCccccCCCceEECCCcccC
Confidence            999998643    235688888864

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.88  E-value=2.4e-23  Score=169.36  Aligned_cols=99  Identities=26%  Similarity=0.403  Sum_probs=89.9

Q ss_pred             ccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--------cccC
Q psy10189        233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--------VKFN  304 (376)
Q Consensus       233 ~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~--------~~f~  304 (376)
                      .+..++||||.|+|++|+++|.+.++|+||||+|++.++.|+|||+.++.|+||+|.. .+|.|++++        ..|+
T Consensus        19 ~L~~~~WyhG~IsR~eAe~lL~~~~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~-~~g~f~l~~~~~~~~~~~~F~   97 (164)
T 2bbu_A           19 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQC-EGGSFSLQSDPRSTQPVPRFD   97 (164)
T ss_dssp             HHHHTSCCCTTSCHHHHHHHHHHSSTTCCEEEECSTTSCCEEEEECCTTCCEEEECEE-ETTEEESSSCCCCCSSCTTCC
T ss_pred             hhccCCccCCCCCHHHHHHHhcCCCCCCEEEEECCCCCCCEEEEEEECCceEEEEEEe-CCCeEEEecCcccccCCCccC
Confidence            3678899999999999999998888999999999988999999999999999999987 567888874        6999


Q ss_pred             CHHHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        305 SLNELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       305 sl~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ||.+||+||+.+++.....+.|..|+|.
T Consensus        98 SL~eLV~~Y~~~~~~~~~~~~l~ep~~~  125 (164)
T 2bbu_A           98 CVLKLVHHYMPPPGTPSFSLPPTEPSSE  125 (164)
T ss_dssp             HHHHHHHHHSCCCSCSCCSSSCSSCCSS
T ss_pred             CHHHHHHHHhhCCCCCCccccccCCCcc
Confidence            9999999999999987778888888874

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.88  E-value=8.7e-23  Score=160.71  Aligned_cols=94  Identities=33%  Similarity=0.441  Sum_probs=84.5

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeC---------------CeeEEEEEEEcCCCcEEE
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS---------------DGVQHFKVLRDSSGKFFL  298 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~---------------~~v~h~~I~~~~~~~~~~  298 (376)
                      ...++||||.|+|++|+++|...++|+||||+|++.+|.|+|||+..               +.|+||+|...++| |++
T Consensus        17 ~~~~~Wyhg~isR~eAe~lL~~~~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g-~~l   95 (131)
T 2kno_A           17 DTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKG-VKI   95 (131)
T ss_dssp             CCHHHHBCTTCCHHHHHHHHTTSCTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSC-CCE
T ss_pred             cccCCceecCCCHHHHHHHhcCCCCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCC-CEE
Confidence            67789999999999999999888999999999998999999999986               38999999987777 777


Q ss_pred             ----eccccCCHHHHHHHHhhCCcCCcceeeeCCCC
Q psy10189        299 ----WVVKFNSLNELVEYHRTASVSRSQDVKLRDMV  330 (376)
Q Consensus       299 ----~~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~  330 (376)
                          ....|+||.+||+||+.+++.+  .++|+.|+
T Consensus        96 ~g~~~~~~F~SL~eLV~~y~~~~~~L--~~~L~~P~  129 (131)
T 2kno_A           96 KGCPSEPYFGSLSALVSQHSISPISL--PCCLRIPS  129 (131)
T ss_dssp             ETCSSCCCCCSHHHHHHTTTTCCSSC--SSCCBCSS
T ss_pred             ecCCCCCccCCHHHHHHHHhhCCCCC--CeECCCcC
Confidence                4588999999999999999887  77888886

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.87  E-value=1.3e-22  Score=167.20  Aligned_cols=99  Identities=28%  Similarity=0.451  Sum_probs=87.2

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--------cccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--------VKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~--------~~f~s  305 (376)
                      +..++||||.|+|++||++|.+.++|+||||+|++.++.|+|||+.++.|+||+|... +|.|++++        ..|+|
T Consensus        14 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~-~g~~~l~~~~~~~~~~~~F~s   92 (169)
T 2c9w_A           14 LGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ-DGKFRLDSIICVKSKLKQFDS   92 (169)
T ss_dssp             HHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEE-TTEEEECTTTTTGGGCCCBSC
T ss_pred             cccCCccccCCCHHHHHHHcCCCCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEe-CCEEEEccccCccccCCCCCC
Confidence            6788999999999999999998899999999999888999999999999999999984 78899986        88999


Q ss_pred             HHHHHHHHhhCCcCC----------cceeeeCCCCCcc
Q psy10189        306 LNELVEYHRTASVSR----------SQDVKLRDMVPEE  333 (376)
Q Consensus       306 l~~lv~~y~~~~~~~----------~~~~~L~~p~~~~  333 (376)
                      |.+||+||+.+++..          ...+.|++|+++.
T Consensus        93 l~eLI~~y~~~~~~~~~~~~~~~~~~~~~~L~~P~~~~  130 (169)
T 2c9w_A           93 VVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYTS  130 (169)
T ss_dssp             HHHHHHHHHHHTC--------------CCCCCCBCCSS
T ss_pred             HHHHHHHHHhCcCCCcccccCCCCcCccceecCccccc
Confidence            999999999988751          2467899998764

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.87  E-value=1.5e-22  Score=163.25  Aligned_cols=85  Identities=28%  Similarity=0.481  Sum_probs=78.2

Q ss_pred             ccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--------cccC
Q psy10189        233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--------VKFN  304 (376)
Q Consensus       233 ~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~--------~~f~  304 (376)
                      .+..++||||.|+|++||++|.+.++|+||||+|++.++.|+|||+.++.|+||+|.. .+|.|++.+        ..|+
T Consensus        30 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~-~~g~f~l~~~~~~~~~~~~F~  108 (152)
T 2hmh_A           30 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQX-EGGSFSLQSDPRSTQPVPRFD  108 (152)
T ss_dssp             HHHHTSSEETTCCHHHHHHHHHTSCTTEEEEEECCSTTCSEEEEEEETTEEEEEEEEC-GGGCBEECBCTTCSSCCCCBS
T ss_pred             hhccCCCcCCCCCHHHHHHHhcCCCCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEe-cCCEEEEecccccccccCccC
Confidence            3678899999999999999999889999999999988999999999999999999987 667888874        8999


Q ss_pred             CHHHHHHHHhhCCc
Q psy10189        305 SLNELVEYHRTASV  318 (376)
Q Consensus       305 sl~~lv~~y~~~~~  318 (376)
                      ||.+||+||+.++.
T Consensus       109 SL~eLV~~Y~~~~~  122 (152)
T 2hmh_A          109 XVLKLVHHYMPPQA  122 (152)
T ss_dssp             SHHHHHHHTCCCCC
T ss_pred             CHHHHHHHHhhCcc
Confidence            99999999999874

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.86  E-value=2.4e-22  Score=155.35  Aligned_cols=86  Identities=23%  Similarity=0.359  Sum_probs=77.9

Q ss_pred             cccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEe----CCeeEEEEEEEcCCCcEEEe-cccc--CC
Q psy10189        234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKC----SDGVQHFKVLRDSSGKFFLW-VVKF--NS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~----~~~v~h~~I~~~~~~~~~~~-~~~f--~s  305 (376)
                      +..++||||.|+|.+|+++|. ..++|+||||+|++.+|.|+|||+.    ++.|+||+|.. .+|.|++. ...|  +|
T Consensus        18 ~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~-~~g~~~i~~~~~F~~~s   96 (118)
T 2el8_A           18 ALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKR-EGPKYVIDVEQPFSCTS   96 (118)
T ss_dssp             CSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCC-BTTBCCBSSSSCCCCSS
T ss_pred             ccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEE-cCCEEEEeCCCeECCCC
Confidence            567899999999999999996 3589999999999889999999999    88999999987 56788887 5789  99


Q ss_pred             HHHHHHHHhhCCcCC
Q psy10189        306 LNELVEYHRTASVSR  320 (376)
Q Consensus       306 l~~lv~~y~~~~~~~  320 (376)
                      |.+||+||+.+++++
T Consensus        97 L~eLV~~y~~~~~gl  111 (118)
T 2el8_A           97 LDAVVNYFVSHTKKA  111 (118)
T ss_dssp             HHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHhhCCCCC
Confidence            999999999999887

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.86  E-value=4.7e-22  Score=164.94  Aligned_cols=99  Identities=23%  Similarity=0.266  Sum_probs=88.0

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-----cccCCHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-----VKFNSLNE  308 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~-----~~f~sl~~  308 (376)
                      +..++||||.|+|.+||++|.+.++|+||||+|++..+.|+||++.++.|+||+|... +|.|++.+     ..|+||.+
T Consensus        31 l~~~~WYhG~isR~eAE~lL~~~~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~-~g~f~l~~~~~~~~~F~SL~e  109 (187)
T 2izv_A           31 INNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQW-NHNFSFDAHDPCVFHSPDITG  109 (187)
T ss_dssp             HHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEE-TTEEESCTTCTTSCCBSSHHH
T ss_pred             cccCCccccCCCHHHHHHHhcCCCCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEEC-CCEEEEeccCCCccccCCHHH
Confidence            6788999999999999999998899999999998777789999999999999999886 67788874     27999999


Q ss_pred             HHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        309 LVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       309 lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      ||+||+.++......+.|++|+++.
T Consensus       110 LV~hY~~~~~~~~~~~~L~~Pv~r~  134 (187)
T 2izv_A          110 LLEHYKDPSACMFFEPLLSTPLIRT  134 (187)
T ss_dssp             HHHHTCCGGGCCTTSCCCCEECCCC
T ss_pred             HHHHHHhcccccccccccccccccc
Confidence            9999999988875567899988764

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=6.7e-22  Score=153.86  Aligned_cols=110  Identities=21%  Similarity=0.265  Sum_probs=88.8

Q ss_pred             CCCcceeeeeCCeeeeeecccccccccCcchhhhccCCCCCCccccccccccccccccccChHHHHHhhc-CC-CCCceE
Q psy10189        185 SDQHWWHGEIGARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLS-NK-HEGAFL  262 (376)
Q Consensus       185 ~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~-~~-~~G~fl  262 (376)
                      .+++||.+      +++|+|||.+.+.                      ++.++|||         .+|. +. .+|+||
T Consensus         6 ~~~~~~~~------~~iPsnyv~~~~~----------------------l~~~~Wyh---------~Ll~~g~~~dG~FL   48 (126)
T 2cr4_A            6 SGEDYEKV------PLPNSVFVNTTES----------------------CEVERLFK---------ATSPRGEPQDGLYC   48 (126)
T ss_dssp             CCCCCCSC------SSCTTTBCSCCCH----------------------HHHHHHHH---------HHSTTSCCCTTCEE
T ss_pred             CCCCeEEc------CCCCHhhcCcccc----------------------cccCCCHH---------HHhhCCCCCCCeEE
Confidence            45668755      5678888876432                      67789999         3333 33 369999


Q ss_pred             EeecCCCCCceEEEEEeC--CeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        263 IRVSESSPGDFSLSVKCS--DGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       263 vR~s~~~~~~~~ls~~~~--~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      ||+|+ .+|.|+|||+.+  +.|+||+|...++ .|++. ...|+||.+||+||+.+++.....+.|++|+.+.
T Consensus        49 VR~S~-~~g~y~LSv~~~~~~~vkH~rI~~~~~-~~~i~~~~~F~sL~eLV~hY~~~~l~~~~~~~L~~P~~~~  120 (126)
T 2cr4_A           49 IRNSS-TKSGKVLVVWDETSNKVRNYRIFEKDS-KFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGYT  120 (126)
T ss_dssp             EEECS-STTCEEEEEEETTTTEECCEECEEETT-EEESSSSCEESSHHHHHHHHTTSCCSSSSSCCCCSBSSCC
T ss_pred             EEecC-CCCCEEEEEEeCCCCCEEEEEEEECCC-eEEEcCCccCCCHHHHHHHHhhCCcCCCCCEEeCCcCCCC
Confidence            99998 899999999999  9999999987765 77776 5799999999999999999887778899998654

>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A

Probab=99.83  E-value=2.3e-20  Score=164.58  Aligned_cols=98  Identities=26%  Similarity=0.374  Sum_probs=88.4

Q ss_pred             cccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv  310 (376)
                      ...++||||.|+|++||++|.  +.++|+||||.|++.++.|+|||+.++.|+||+|....+|.|++. +..|+||.+||
T Consensus         3 ~~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV   82 (254)
T 2oq1_A            3 AAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELC   82 (254)
T ss_dssp             TTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             cccCCccCCCCCHHHHHHHHhccCCCCcEEEEEeCCCCCCCEEEEEEECCeEEEEEEEEeCCCCEEeCCCCccCCHHHHH
Confidence            456799999999999999994  568999999999988899999999999999999998788899997 68999999999


Q ss_pred             HHHhhCCcCCcceeeeCCCCCcc
Q psy10189        311 EYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       311 ~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      +||+.++..+  .++|+.|+++.
T Consensus        83 ~~y~~~~~~l--~~~L~~p~~~~  103 (254)
T 2oq1_A           83 EFYSRDPDGL--PCNLRKPCNRP  103 (254)
T ss_dssp             HHHHHCCTTS--SSCCCSBCCCC
T ss_pred             HHHHhCCCCc--ccccccccCCC
Confidence            9999998776  67899988654

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.83  E-value=1.5e-21  Score=186.99  Aligned_cols=108  Identities=27%  Similarity=0.461  Sum_probs=91.7

Q ss_pred             cCCCcceeeee--CCeeeeeecccccccccCcchhhhccCCCCCCcccccccccccccc-----ccccChHHHHHhhcCC
Q psy10189        184 RSDQHWWHGEI--GARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWY-----YGRITRADAERLLSNK  256 (376)
Q Consensus       184 ~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~w~-----~g~i~r~~ae~~L~~~  256 (376)
                      ..+++||.++.  .++.|++|++||.+.+                       +..+|||     ||.|+|++||++|.+ 
T Consensus        14 ~~~~~ww~~~~~~~~~~g~~P~~~v~~~~-----------------------~~~~~wy~~~w~hg~i~r~~ae~lL~~-   69 (463)
T 3cxl_A           14 LYFQGVWKSYLYQLQQEAPHPRRITCTCE-----------------------VENRPKYYGREFHGMISREAADQLLIV-   69 (463)
T ss_dssp             ----CCSCCHHHHHHHHSCCCEECCCCCC-----------------------CTTCCTTCCTTBCCSCCHHHHHHHHTT-
T ss_pred             CCCCCEEEEEecCcCccCCCCcCccCCcc-----------------------ccCCCCccccccccCCCHHHHHHHHcC-
Confidence            35678999985  5789999999997642                       3455666     999999999999975 


Q ss_pred             CCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHH-----HHhhCC
Q psy10189        257 HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVE-----YHRTAS  317 (376)
Q Consensus       257 ~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~-----~y~~~~  317 (376)
                      ++|+||||+|++.+|.|+|||+.++.|+||+|..  +|.|++++..|+||.+||+     ||....
T Consensus        70 ~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~--~g~~~~~~~~F~sl~~Lv~dGl~~~~~~~~  133 (463)
T 3cxl_A           70 AEGSYLIRESQRQPGTYTLALRFGSQTRNFRLYY--DGKHFVGEKRFESIHDLVTDGLITLYIETK  133 (463)
T ss_dssp             STTEEEEEECSSSTTCEEEEEECSSSEEEEECEE--SSSEESSSCCBSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeccCCCCCCEEEEEEECCEEEEEEEec--CCeEEECCCccCCHHHHHHHHHHhhhccCC
Confidence            6899999999999999999999999999999987  5889998899999999999     997654

>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*

Probab=99.82  E-value=2.2e-20  Score=163.12  Aligned_cols=98  Identities=34%  Similarity=0.595  Sum_probs=81.8

Q ss_pred             cccccccccc-----ChHHHHHhhc------CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC---cEEEe-
Q psy10189        235 KNHDWYYGRI-----TRADAERLLS------NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---KFFLW-  299 (376)
Q Consensus       235 ~~~~w~~g~i-----~r~~ae~~L~------~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~---~~~~~-  299 (376)
                      .+++||||.|     +|.+||++|.      +.++|+||||+|++.+|.|+|||+.+++|+||+|...+++   .|++. 
T Consensus         2 ~~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~   81 (246)
T 4fbn_A            2 SNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTD   81 (246)
T ss_dssp             -CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEECGGGCCEEEEET
T ss_pred             CCCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEECCEEEEEEEEEECCCCceeEEecC
Confidence            4679999999     7999999995      5789999999999999999999999999999999876554   47776 


Q ss_pred             ccccCCHHHHHHHHhhCCcCCc-ceeeeCCCCCc
Q psy10189        300 VVKFNSLNELVEYHRTASVSRS-QDVKLRDMVPE  332 (376)
Q Consensus       300 ~~~f~sl~~lv~~y~~~~~~~~-~~~~L~~p~~~  332 (376)
                      +..|+||.+||+||+.+++... ....|..|++.
T Consensus        82 ~~~F~sl~~LV~~y~~~~l~~~~~~~~l~~p~p~  115 (246)
T 4fbn_A           82 NLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQ  115 (246)
T ss_dssp             TEEESSHHHHHHHHHHSCEECSSCEECCCCBCCC
T ss_pred             CcccCCHHHHHHhHhhcccccccccccccccccc
Confidence            5899999999999999987532 34455555544

>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*

Probab=99.82  E-value=3.2e-20  Score=163.64  Aligned_cols=97  Identities=26%  Similarity=0.429  Sum_probs=87.3

Q ss_pred             ccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHH
Q psy10189        235 KNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVE  311 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~  311 (376)
                      ..++||||.|+|++||++|.  +.++|+||||+|++.+|.|+|||+.++.|+||+|....+|.|++. +..|+||.+||+
T Consensus         3 ~~~~Wy~g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLv~   82 (254)
T 1a81_A            3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCH   82 (254)
T ss_dssp             TSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             ccCccccCCCCHHHHHHHHhcCCCCCcEEEEEecCCCCCCEEEEEEECCeeEEEEEEEcCCCCEEeCCCCCcCCHHHHHH
Confidence            45799999999999999995  468999999999988999999999999999999998788899997 699999999999


Q ss_pred             HHhhCCcCCcceeeeCCCCCcc
Q psy10189        312 YHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       312 ~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      ||+.++..+  .+.|+.|+++.
T Consensus        83 ~y~~~~~~l--~~~L~~p~~~~  102 (254)
T 1a81_A           83 YHSQESDGL--VCLLKKPFNRP  102 (254)
T ss_dssp             HHTTCCTTS--SSCCCEECCCC
T ss_pred             HHHhCCCCc--eECCccccCCC
Confidence            999998776  67788887654

>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*

Probab=99.82  E-value=7.1e-20  Score=137.32  Aligned_cols=97  Identities=49%  Similarity=0.894  Sum_probs=84.8

Q ss_pred             cccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhh
Q psy10189         50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNE  129 (376)
Q Consensus        50 ~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~  129 (376)
                      +|||++...+||||.|+|++|+.+|...++|+||||.|++.++.|+||+..++.++|++|....+|.|++.+..|+|+.+
T Consensus         1 ~nyi~l~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~   80 (100)
T 1r1p_A            1 GSFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNK   80 (100)
T ss_dssp             -----CTTTTTSCTTCCHHHHHHHHHTSCTTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSSCEESSHHH
T ss_pred             CCccEeccCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeCCEeCCHHH
Confidence            48999999999999999999999999989999999999999999999999999999999998888899998878999999


Q ss_pred             hHhhhhccccccccccc
Q psy10189        130 LVEYHRTASVSRSQDVK  146 (376)
Q Consensus       130 li~~~~~~~~~~~~~~~  146 (376)
                      ||+||+.+++.....+.
T Consensus        81 LV~~y~~~~l~~~~~i~   97 (100)
T 1r1p_A           81 LVDYYRTTSISKQKQVF   97 (100)
T ss_dssp             HHHHHTTSCSSSSSCCC
T ss_pred             HHHHHHhCCCCCCCceE
Confidence            99999998876544433

>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A

Probab=99.79  E-value=7.7e-20  Score=167.43  Aligned_cols=99  Identities=28%  Similarity=0.551  Sum_probs=87.5

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCC-CCceEEEEEeCCeeEEEEEEEcCCCcEEEec-cccCCHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVE  311 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~-~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~lv~  311 (376)
                      +..++||||.|+|.+|+.+|.+.++|+||||+|.+. +|.|+|||+.++.|+||+|... +|.|++.+ ..|+||.+||+
T Consensus         7 L~~~~WYhG~IsR~eAE~lL~~~~dG~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~-~g~y~l~~~~~F~SL~eLV~   85 (373)
T 3hhm_B            7 LQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR-DGKYGFSDPLTFSSVVELIN   85 (373)
T ss_dssp             GGGCTTEEESCCHHHHHHHTTTCCTTEEEEEECSCC--CCEEEEEEETTEEEEEEECCS-SSCBCSSSSCCBSSSHHHHH
T ss_pred             cccCCccCCCCCHHHHHHHhcCCCCCCEEEeccCCCCCCCEEEEEEECCeeEEEEEEec-CCeEEeCCCCCcCCHHHHHH
Confidence            678899999999999999999889999999999887 8999999999999999999864 57787774 89999999999


Q ss_pred             HHhhCCcC---CcceeeeCCCCCcc
Q psy10189        312 YHRTASVS---RSQDVKLRDMVPEE  333 (376)
Q Consensus       312 ~y~~~~~~---~~~~~~L~~p~~~~  333 (376)
                      ||+.+++.   ....++|++|+++.
T Consensus        86 ~Y~~~~l~~~~~gl~~~L~~Pv~r~  110 (373)
T 3hhm_B           86 HYRNESLAQYNPKLDVKLLYPVSKY  110 (373)
T ss_dssp             HHHHSCGGGSCTTCCCCCCEECCSC
T ss_pred             HHhhCCccccCCCCCcccCCCCCCc
Confidence            99999976   33578899998764

>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*

Probab=99.77  E-value=2e-18  Score=128.38  Aligned_cols=92  Identities=67%  Similarity=1.142  Sum_probs=82.7

Q ss_pred             ccccccccCCHHHHHHHhcCCC-CccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhh
Q psy10189         57 NHDWYYGRITRADAERLLSNKH-EGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHR  135 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~~~-~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~  135 (376)
                      ..+||||.|+|++|+.+|...+ +|+||||.|++.++.|+||+..++.++|++|....+|.|++.+..|+|+.+||+||+
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~   81 (96)
T 1jyr_A            2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHR   81 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTT
T ss_pred             CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHh
Confidence            3689999999999999999865 999999999999999999999999999999998888999998878999999999999


Q ss_pred             ccccccccccccc
Q psy10189        136 TASVSRSQDVKLR  148 (376)
Q Consensus       136 ~~~~~~~~~~~~~  148 (376)
                      .+++.....+.+.
T Consensus        82 ~~~l~~~~~~~L~   94 (96)
T 1jyr_A           82 STSVSRNQQIFLR   94 (96)
T ss_dssp             SSCSCSSSCCCCB
T ss_pred             hCCCCCCCceEec
Confidence            9987765544443

>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...

Probab=99.77  E-value=2.1e-18  Score=132.98  Aligned_cols=100  Identities=69%  Similarity=1.153  Sum_probs=88.8

Q ss_pred             ccccccccccccCCHHHHHHHhcCC-CCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhH
Q psy10189         53 IEMKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELV  131 (376)
Q Consensus        53 ve~~~~~w~~g~isr~~ae~~l~~~-~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li  131 (376)
                      |++...+||||.|+|++|+.+|... ++|+||||.|.+.++.|+||+..++.++|++|....+|.|++.+..|.|+.+||
T Consensus         1 i~L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~eLV   80 (117)
T 3ov1_A            1 IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV   80 (117)
T ss_dssp             --CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHH
T ss_pred             CCcccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCCeEEECCCCcCCHHHHH
Confidence            4677889999999999999999984 689999999999999999999999999999999888999999988899999999


Q ss_pred             hhhhcccccccccccccCCCc
Q psy10189        132 EYHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~  152 (376)
                      +||+.+++.......+..|.+
T Consensus        81 ~~y~~~~l~~~~~~~L~~~~~  101 (117)
T 3ov1_A           81 DYHRSTSVSRNQQIFLRDIEQ  101 (117)
T ss_dssp             HHTTTSCSCSSSCCCCBCCCC
T ss_pred             HHHhhCCCCCCCceEecCCCc
Confidence            999999987766666665543

>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*

Probab=99.77  E-value=8.8e-19  Score=139.08  Aligned_cols=97  Identities=32%  Similarity=0.658  Sum_probs=86.5

Q ss_pred             CCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEE
Q psy10189         32 DDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR  111 (376)
Q Consensus        32 ~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~  111 (376)
                      .+..||.+       + |.++   ...+||||.|+|++|+.+|...++|+||||.|.+.++.|+||+..++.++|++|. 
T Consensus        11 ~~~~Ww~~-------~-p~~~---~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~-   78 (138)
T 2crh_A           11 AEQNWWEG-------P-PQDL---SVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-   78 (138)
T ss_dssp             CCCCCSCC-------C-SSCG---GGSSSBCCSCCHHHHHHHTTTSCTTEEEEECCSSTTCCCEEEEEETTEEEEEECE-
T ss_pred             CCCCEeee-------c-CCCC---CcCCcccCCCCHHHHHHHhcCCCCCEEEEEECCCCCCCEEEEEEECCeEEEEEEE-
Confidence            44579999       5 8887   5688999999999999999999999999999999999999999999999999995 


Q ss_pred             cCCCcEEEec-eeecchhhhHhhhhccccc
Q psy10189        112 DSSGKFFLWV-VKFNSLNELVEYHRTASVS  140 (376)
Q Consensus       112 ~~~~~~~~~~-~~f~sl~~li~~~~~~~~~  140 (376)
                      ..+|.|++.+ ..|.||.+||+||+..++.
T Consensus        79 ~~~g~~~l~~~~~F~sl~eLV~~y~~~~l~  108 (138)
T 2crh_A           79 TAEGLYRITEKKAFRGLTELVEFYQQNSLK  108 (138)
T ss_dssp             EETTEEESSTTCCBSSHHHHHHHHTTSCGG
T ss_pred             eCCCEEEECCCCccCCHHHHHHHHHhCccc
Confidence            5677888875 4699999999999988765

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=173.07  Aligned_cols=98  Identities=26%  Similarity=0.377  Sum_probs=88.6

Q ss_pred             cccccccccccChHHHHHhh--cCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L--~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv  310 (376)
                      ...++||||.|+|.+||++|  .+.++|+||||+|++.+|.|+||++.++.|+||+|.+..+|.|++. +..|+||.+||
T Consensus         5 ~~~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~~~~~h~~i~~~~~g~~~~~~~~~f~sl~~Lv   84 (613)
T 2ozo_A            5 AAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELC   84 (613)
T ss_dssp             TSSCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             CCCCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcEEECCCCCcCCHHHHH
Confidence            45679999999999999999  4577999999999999999999999999999999998888899996 68899999999


Q ss_pred             HHHhhCCcCCcceeeeCCCCCcc
Q psy10189        311 EYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       311 ~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      +||+.++.++  .+.|++|++++
T Consensus        85 ~~y~~~~~~l--~~~L~~p~~~~  105 (613)
T 2ozo_A           85 EFYSRDPDGL--PCNLRKPCNRP  105 (613)
T ss_dssp             HHHTSCCTTS--SSCCCSBCCCC
T ss_pred             HHHhhCCCCC--CccCCccCCCC
Confidence            9999999777  67799998764

>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.77  E-value=4.7e-18  Score=132.06  Aligned_cols=93  Identities=43%  Similarity=0.646  Sum_probs=83.7

Q ss_pred             ecccccc----ccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec
Q psy10189         48 IPSNYIE----MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV  121 (376)
Q Consensus        48 vP~nyve----~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~  121 (376)
                      .|+|||+    +...+||||.|+|++|+.+|..  .++|+||||.|.+.++.|+||+..++.++|++|....+|.|++.+
T Consensus         2 ~psnyv~~~~~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~   81 (121)
T 2dly_A            2 SSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTR   81 (121)
T ss_dssp             CSCCCCCSSGGGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSSCEEEET
T ss_pred             CCccccccccccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCCCEEECC
Confidence            5999997    3467899999999999999986  589999999999999999999999999999999987888888875


Q ss_pred             -eeecchhhhHhhhhccccc
Q psy10189        122 -VKFNSLNELVEYHRTASVS  140 (376)
Q Consensus       122 -~~f~sl~~li~~~~~~~~~  140 (376)
                       ..|.|+.+||+||+..+..
T Consensus        82 ~~~F~sl~eLV~~y~~~~~~  101 (121)
T 2dly_A           82 RKVFSTLNEFVNYYTTTSDG  101 (121)
T ss_dssp             TEEESSHHHHHHHHTTCCSS
T ss_pred             CCccCCHHHHHHHHhhCCCC
Confidence             4699999999999988754

>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=99.76  E-value=8.5e-21  Score=168.39  Aligned_cols=136  Identities=29%  Similarity=0.401  Sum_probs=101.3

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEE---EeccCCcc-------------ceeec--cCCccceecc--ccc---------
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKI---LNMEDDMN-------------WYRAE--LDGKEGLIPS--NYI---------   53 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v---~~~~~~~~-------------W~~~~--~~g~~G~vP~--nyv---------   53 (376)
                      ++|||+|.+..++||+|.+||.+.|   +.. .+++             ||.++  ..+..|.+|.  ||+         
T Consensus       106 l~aL~~~~~~~~~eLsf~kgd~~~ier~ln~-~~pdw~~l~k~rd~~~~wl~~~gl~~~~~~~~~~~~~~~~~~~~l~~~  184 (302)
T 2y3a_B          106 IAEIHESRTKLEQDLRAQASDNREIDKRMNS-LKPDLMQLRKIRDQYLVWLTQKGARQRKINEWLGIKNETEDQYSLMED  184 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHTTCCSCC-----------------------------
T ss_pred             HHHHHhhhhcchhhhhhhhhHHHhHHhhhcc-CChHHHHHhhcccchhHHHHhcCCCcccccccccccCCCCCccccccc
Confidence            4689999999999999999999988   432 2223             44443  2345444442  333         


Q ss_pred             -----cccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecch
Q psy10189         54 -----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSL  127 (376)
Q Consensus        54 -----e~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl  127 (376)
                           .+...+||||.|+|.+|+.+|.+.++|+||||.| +.++.|+||+..++.|+|++|.....|.++... ..|.||
T Consensus       185 ~~~~~~l~~~~WyhG~IsR~eAE~lL~~~~~GtFLVR~S-s~~g~y~LSv~~~~~V~H~rI~~~~~g~~~~~~~~~F~SL  263 (302)
T 2y3a_B          185 EDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSL  263 (302)
T ss_dssp             ---CGGGSSTTTBCCSCCHHHHHHHHTTSCTTBEEBCCC-SSTTCEEEEEECSSSEEEEEEEEETTEEESBTTBCCCSSH
T ss_pred             ccccccccCCCccCCCCCHHHHHHHhcCCCCCcEEEEec-cCCCceEEEEEeCCeeEEEEEEECCCceEEeCCCCCCCCH
Confidence                 2345789999999999999998899999999999 889999999999999999999987776555444 359999


Q ss_pred             hhhHhhhhccccc
Q psy10189        128 NELVEYHRTASVS  140 (376)
Q Consensus       128 ~~li~~~~~~~~~  140 (376)
                      .+||+||...++.
T Consensus       264 ~eLV~~Y~~~~L~  276 (302)
T 2y3a_B          264 KELVLHYQHASLV  276 (302)
T ss_dssp             HHHHHTTSSSCST
T ss_pred             HHHHHHHHhCCcc
Confidence            9999999987754

>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A

Probab=99.76  E-value=1.5e-18  Score=133.13  Aligned_cols=93  Identities=27%  Similarity=0.385  Sum_probs=84.9

Q ss_pred             CccceeccccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece
Q psy10189         43 GKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV  122 (376)
Q Consensus        43 g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~  122 (376)
                      |++|+||.+.-.+...+||||.|+|++|+.+|.  .+|+||||+|.+.+ .|+||+..++.++|++|... ++.|.+...
T Consensus         1 ~~~g~vp~~~~~l~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~-~y~LSv~~~~~v~H~~I~~~-~g~~~~~~~   76 (114)
T 1wqu_A            1 GSSGSSGEVQKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSL-DNLYRLEGE   76 (114)
T ss_dssp             CCCCCCCGGGSCGGGCTTEEESCCHHHHHTTCC--STTEEEEEECSSSC-CEEEEEEETTEEEEEECEEC-SSSEESSSC
T ss_pred             CCccccCCcccccccCCcEeeCCCHHHHHHHhc--cCCeEEEEEcCCCC-CEEEEEEECCEEEEEEEEec-CCEEEECCC
Confidence            689999999999999999999999999999998  59999999999888 99999999999999999865 578888877


Q ss_pred             eecchhhhHhhhhcccc
Q psy10189        123 KFNSLNELVEYHRTASV  139 (376)
Q Consensus       123 ~f~sl~~li~~~~~~~~  139 (376)
                      .|.|+.+||+||+.+..
T Consensus        77 ~F~sl~~LV~~y~~~~~   93 (114)
T 1wqu_A           77 GFPSIPLLIDHLLSTQQ   93 (114)
T ss_dssp             CBSSHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHCCC
Confidence            79999999999997643

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.76  E-value=1.3e-18  Score=173.52  Aligned_cols=98  Identities=26%  Similarity=0.423  Sum_probs=89.2

Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv  310 (376)
                      ++.++||||.|+|.+||++|..  .++|+||||+|++.+|.|+|||+.++.|+||+|.+.++|.|++. +..|+||.+||
T Consensus        10 l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~v~h~~i~~~~~g~~~~~~~~~f~sl~~Lv   89 (635)
T 4fl3_A           10 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLC   89 (635)
T ss_dssp             CTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTEEEEEEEEECTTSCEESTTCCCBSSHHHHH
T ss_pred             hhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCEEEeEEEEEcCCCCEEeCCCCccCCHHHHH
Confidence            6778999999999999999964  67999999999988999999999999999999999888999996 68999999999


Q ss_pred             HHHhhCCcCCcceeeeCCCCCcc
Q psy10189        311 EYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       311 ~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      +||+.++.++  .++|++|+++.
T Consensus        90 ~~y~~~~~~l--~~~L~~p~~~~  110 (635)
T 4fl3_A           90 HYHSQESDGL--VCLLKKPFNRP  110 (635)
T ss_dssp             HHHTTCCTTS--SSCCCEECCCC
T ss_pred             HHHhhCCCCC--eeccCCcCCCc
Confidence            9999998777  77888888653

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.75  E-value=3.4e-19  Score=163.92  Aligned_cols=147  Identities=18%  Similarity=0.320  Sum_probs=97.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccccccccccCCHHHHHHHhcCCCCcc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGA   81 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~   81 (376)
                      .|+|+|||+++.++||+|++||+|.|+++ .+++||.|+.+|+.||||+|||+.....      +        .....+.
T Consensus       176 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~~~------~--------~~~~~~~  240 (341)
T 2dyb_A          176 RAEALFDFTGNSKLELNFKAGDVIFLLSR-INKDWLEGTVRGATGIFPLSFVKILKDF------P--------EEDDPTN  240 (341)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEEE-CSSSEEEEEETTEEEEEEGGGEEEEECC------C--------CTTCCCE
T ss_pred             EEEEEEeeCCCCCCcCCccCCCEEEEEEe-cCCCEEEEEECCcEEEechHHeEEcCCC------C--------ccccccc
Confidence            58999999999999999999999999998 6679999999999999999999865321      0        0000011


Q ss_pred             EEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhhcccccccccccccCCCchhhhhhhcc
Q psy10189         82 FLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALY  161 (376)
Q Consensus        82 flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  161 (376)
                      .+.-....           .........                                    ...........+.|+|
T Consensus       241 ~~~~~~~~-----------~~~~~~~~~------------------------------------~~~~~~~~~~~~~a~y  273 (341)
T 2dyb_A          241 WLRCYYYE-----------DTISTIKDI------------------------------------AVEEDLSSTPLLKDLL  273 (341)
T ss_dssp             EEEEEEEC-----------SSCEEEEEE------------------------------------EECSCTTCCCCHHHHH
T ss_pred             cccccccC-----------CCCcccccc------------------------------------ccccccCCCcchhhhh
Confidence            11000000           000000000                                    0000000012456889


Q ss_pred             cCCC----CCCCceec--cCCCEEEEEecCCCcceeeeeC---Ceeeeeecc-cccccc
Q psy10189        162 DFTP----QEPGELEF--RRGDVITVTDRSDQHWWHGEIG---ARKGLFPAT-YILNME  210 (376)
Q Consensus       162 ~~~~----~~~~eL~~--~~g~~i~v~~~~~~~w~~~~~~---~~~G~~P~~-~v~~~~  210 (376)
                      +|.+    ..+.+|++  .+||+|.|+++.+.|||.|+.+   |+.|+||.+ +|+..+
T Consensus       274 d~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~~  332 (341)
T 2dyb_A          274 ELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKD  332 (341)
T ss_dssp             HHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEECC
T ss_pred             hhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEecC
Confidence            9987    45566666  7999999999999999999865   555699998 666543

>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*

Probab=99.72  E-value=2.1e-17  Score=126.31  Aligned_cols=87  Identities=22%  Similarity=0.470  Sum_probs=79.6

Q ss_pred             ccccccccccCCHHHHHHHhcCC---CCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhH
Q psy10189         55 MKNHDWYYGRITRADAERLLSNK---HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELV  131 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~---~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li  131 (376)
                      +...+||||.|+|++|+.+|...   ++|+||||.|++.++.|+||+..++.++|++|....+|.|++....|.|+.+||
T Consensus         6 l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV   85 (111)
T 2hdv_A            6 LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQSIFDML   85 (111)
T ss_dssp             GGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTCCEEETTEEESSHHHHH
T ss_pred             cccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEeCCceeCCHHHHH
Confidence            45678999999999999999874   899999999999999999999999999999999888899999877799999999


Q ss_pred             hhhhcccccc
Q psy10189        132 EYHRTASVSR  141 (376)
Q Consensus       132 ~~~~~~~~~~  141 (376)
                      +||+.+++..
T Consensus        86 ~~y~~~~l~~   95 (111)
T 2hdv_A           86 EHFRVHPIPL   95 (111)
T ss_dssp             HHHTTSCCC-
T ss_pred             HHHhhCCccc
Confidence            9999887654

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.72  E-value=2.7e-18  Score=121.27  Aligned_cols=64  Identities=63%  Similarity=1.004  Sum_probs=53.4

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHDWYYGR   64 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~~w~~g~   64 (376)
                      ++++|+|||+++.++||+|++||+|.|+++..+.+||.++.+|++||||+|||++...+|||+.
T Consensus        10 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~w~~~t   73 (74)
T 1gbq_A           10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIVT   73 (74)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC-------
T ss_pred             eEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcCCcccccC
Confidence            4799999999999999999999999999975467899999999999999999999999999974

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.72  E-value=4.1e-18  Score=159.79  Aligned_cols=128  Identities=23%  Similarity=0.310  Sum_probs=84.4

Q ss_pred             ccccccccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCH
Q psy10189        227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSL  306 (376)
Q Consensus       227 ~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl  306 (376)
                      +|.....++.++||||.|+|.+|+++|.  ++|+||||+|++.. .|+|||+.++.|+||+|... ++.|.+.+..|+|+
T Consensus         3 ~~~~~~~l~~~~wyhg~i~r~~a~~lL~--~~G~flvR~s~~~~-~~~lsv~~~~~~~h~~i~~~-~~~~~~~~~~F~sl   78 (377)
T 3cbl_A            3 IPEVQKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSL-DNLYRLEGEGFPSI   78 (377)
T ss_dssp             CCGGGSCGGGCTTBCTTCCHHHHHHHCC--STTEEEEEECC--C-CEEEEC-----CCEEEC-----CCCCC----CCSH
T ss_pred             ccccccccccCCccCCCCCHHHHHHHHh--cCCCEEEEEeCCCC-cEEEEEEECCCccchhhccc-cceEEecceeccch
Confidence            3444445788999999999999999998  48999999998776 89999999999999999875 45677778899999


Q ss_pred             HHHHHHHhhCCcCCcc--eeeeCCCCCccceEEEeccCCCCCCCCcccccc-ceeeeecCCCCCCcccee
Q psy10189        307 NELVEYHRTASVSRSQ--DVKLRDMVPEECLVQALYDFTPQEPGELEFRRD-LKIKRRKSAKTKDETTVR  373 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~--~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  373 (376)
                      .+||+||+.++...+.  ...+..+               ...+.+.+..+ -.+.++||+|+||+|-.+
T Consensus        79 ~~LI~~y~~~~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~lG~G~~g~V~~~  133 (377)
T 3cbl_A           79 PLLIDHLLSTQQPLTKKSGVVLHRA---------------VPKDKWVLNHEDLVLGEQIGRGNFGEVFSG  133 (377)
T ss_dssp             HHHHHHHHHHTCCC-----CCCCEE---------------CCCCTTBCCGGGEEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHhhccCCcccccCcccccC---------------ccccccEEchHHeEEeeEeccCCCCeEEEE
Confidence            9999999987654321  1112222               22334555554 445569999999998644

>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.72  E-value=4.1e-17  Score=126.22  Aligned_cols=105  Identities=32%  Similarity=0.490  Sum_probs=87.4

Q ss_pred             ceeccccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--ee
Q psy10189         46 GLIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--VK  123 (376)
Q Consensus        46 G~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~--~~  123 (376)
                      |--+.....+...+||||.|+|++|+.+|...++|+||||.|.+.++ |+||+..++.++|++|....+|.|++.+  ..
T Consensus         4 ~~s~~~~~~~~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~~   82 (119)
T 2cs0_A            4 GSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVA   82 (119)
T ss_dssp             CCCCSCCCSSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCC
T ss_pred             CcChhhhccccCCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCCcEEEecCCCc
Confidence            44444555567789999999999999999989999999999998888 9999999999999999998888898864  45


Q ss_pred             ecchhhhHhhhhcccccccccccccCCCc
Q psy10189        124 FNSLNELVEYHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       124 f~sl~~li~~~~~~~~~~~~~~~~~~~~~  152 (376)
                      |.|+.+||+||+..++.... ..+..|.+
T Consensus        83 F~sl~eLV~~y~~~~l~~~~-~~L~~P~~  110 (119)
T 2cs0_A           83 HTSLDALVTFHQQKPIEPRR-ELLTQPCR  110 (119)
T ss_dssp             BSSHHHHHHHHTTSCCSSCC-CCCCSBCC
T ss_pred             CCCHHHHHHHHhhCcCCCCC-CEeCccCC
Confidence            99999999999998865322 44555443

>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*

Probab=99.71  E-value=1.6e-17  Score=124.96  Aligned_cols=85  Identities=42%  Similarity=0.653  Sum_probs=76.3

Q ss_pred             cccccccccCCHHHHHHHhc-CCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhh
Q psy10189         56 KNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  134 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~-~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~  134 (376)
                      ...+||||.|+|++|+.+|. ..++|+||||.|.+.++.|+||+..++.++|++|. ..+|.|.+.+..|.|+.+||+||
T Consensus         3 ~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~-~~~g~~~l~~~~F~sl~~LV~~y   81 (102)
T 2cia_A            3 LGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQ-LVDNVYCIGQRRFHTMDELVEHY   81 (102)
T ss_dssp             --CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSSCEEEEEE-EETTEEEETTEEESSHHHHHHHH
T ss_pred             cCCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCeeEEEEEE-ecCCEEEECCcCcCCHHHHHHHH
Confidence            46789999999999999995 47999999999999999999999999999999998 56788999888899999999999


Q ss_pred             hcccccc
Q psy10189        135 RTASVSR  141 (376)
Q Consensus       135 ~~~~~~~  141 (376)
                      +.+++..
T Consensus        82 ~~~~l~~   88 (102)
T 2cia_A           82 KKAPIFT   88 (102)
T ss_dssp             HHSCSEE
T ss_pred             hhCcccc
Confidence            9987654

>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.71  E-value=5.7e-17  Score=121.64  Aligned_cols=92  Identities=42%  Similarity=0.733  Sum_probs=80.3

Q ss_pred             cccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHhhh
Q psy10189         58 HDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH  134 (376)
Q Consensus        58 ~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~~  134 (376)
                      .+||||.|+|++|+.+|..  .++|+||||.|.+.++.|+||+..++.++|++|....+|.|++.+ ..|.|+.+||+||
T Consensus         2 ~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y   81 (100)
T 1rja_A            2 EPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNYH   81 (100)
T ss_dssp             CCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHHH
T ss_pred             CCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHHHH
Confidence            5799999999999999998  689999999999999999999999999999999988888898875 4599999999999


Q ss_pred             hcccccccccccccCCC
Q psy10189        135 RTASVSRSQDVKLRDMV  151 (376)
Q Consensus       135 ~~~~~~~~~~~~~~~~~  151 (376)
                      +..+...  ...+..|.
T Consensus        82 ~~~~~~l--~~~L~~p~   96 (100)
T 1rja_A           82 RAQSLSH--GLRLAAPC   96 (100)
T ss_dssp             HHCCTTS--SSCCCSBC
T ss_pred             hhCCCCC--CCCCCccC
Confidence            9987643  33444444

>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=3.1e-17  Score=126.85  Aligned_cols=103  Identities=23%  Similarity=0.461  Sum_probs=86.6

Q ss_pred             eeccccccccccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeec
Q psy10189         47 LIPSNYIEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFN  125 (376)
Q Consensus        47 ~vP~nyve~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~  125 (376)
                      -.+.+.-.+...+||||.|+|++|+.+|.. ..+|+||||.|.+.++.|+||+..++.++|++|....+|.|++.+..|.
T Consensus         5 ~~~~~~~~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~   84 (119)
T 2gsb_A            5 SSGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYN   84 (119)
T ss_dssp             CCSSCCCSGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTTEEEESSCCBS
T ss_pred             cCCCCCcccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCCCEEECCcccC
Confidence            334444446678999999999999999987 5889999999999999999999999999999999888899999887899


Q ss_pred             chhhhHhhhhcccccccccccccCCC
Q psy10189        126 SLNELVEYHRTASVSRSQDVKLRDMV  151 (376)
Q Consensus       126 sl~~li~~~~~~~~~~~~~~~~~~~~  151 (376)
                      ||.+||+||+..++..  ...|..|.
T Consensus        85 sl~~LI~~y~~~~l~~--~~~L~~Pv  108 (119)
T 2gsb_A           85 SIGDIIDHYRKEQIVE--GYYLKEPV  108 (119)
T ss_dssp             CHHHHHHHHTTSCSBT--TBCCCCCC
T ss_pred             CHHHHHHHHhhCccCC--CCEeCCcc
Confidence            9999999999987642  23444444

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.70  E-value=7.4e-18  Score=112.46  Aligned_cols=53  Identities=23%  Similarity=0.584  Sum_probs=48.3

Q ss_pred             EEEEeecCCCCCCCC-ccccCCCEEEEEeccCCccceeecc-CCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDE-LSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~e-Lsf~~Gd~i~v~~~~~~~~W~~~~~-~g~~G~vP~nyve~   55 (376)
                      +|+|+|||+|+.++| |+|++||+|.|+++ .+++||.++. +|++||||+|||++
T Consensus         5 ~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~-~~~~Ww~g~~~~G~~G~fP~nyVe~   59 (60)
T 2lx7_A            5 RCRTLYPFSGERHGQGLRFAAGELITLLQV-PDGGWWEGEKEDGLRGWFPASYVQL   59 (60)
T ss_dssp             EEEESCCCCSCCCSSCCCCCTTCEEEBSCC-CTTSCEEEECTTSCEEEECGGGEEE
T ss_pred             EEEECcccCCCCCCCCccCCCCCEEEEeEe-cCCCeEEEEeCCCCEEEEcHHHEEE
Confidence            699999999999887 99999999999987 5668999985 79999999999985

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.70  E-value=3.1e-18  Score=130.88  Aligned_cols=73  Identities=37%  Similarity=0.735  Sum_probs=66.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccc----cccccccccCCHHHHHHHhc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEM----KNHDWYYGRITRADAERLLS   75 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~----~~~~w~~g~isr~~ae~~l~   75 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++  .+|+.||||+|||+.    ...+||++.|+|.+|+++|.
T Consensus        29 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~~~w~~g~isR~~Ae~lL~  107 (109)
T 2yt6_A           29 IFVALYDYEARTTEDLSFKKGERFQIINN-TEGDWWEARSIATGKSGYIPSNYVVPADSIQAEEWYFGKMGRKDAESGPS  107 (109)
T ss_dssp             EEEESSCCCCSSTTSCCCCTTCEEEEEEC-SCTTCEEEEESSSCCEEEECTTTEEESSSCTTTHHHHHCCCSCCCCCCSC
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEEc-cCCCcEEEEECCCCCEEEechHHcEECCcccccccccCCcCHHHHHHHhh
Confidence            68999999999999999999999999997 567899998  489999999999984    45789999999999998886

>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1

Probab=99.70  E-value=8.2e-17  Score=121.56  Aligned_cols=83  Identities=31%  Similarity=0.499  Sum_probs=75.8

Q ss_pred             ccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec------eeecchhh
Q psy10189         57 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV------VKFNSLNE  129 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~------~~f~sl~~  129 (376)
                      ..+||||.|+|++|+.+|.. .++|+||||.|++.++.|+||+..++.++|++|....+|.|++..      ..|.|+.+
T Consensus         2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~~   81 (103)
T 1i3z_A            2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCCeEEEeccCCCCCcccCCHHH
Confidence            46899999999999999986 789999999999999999999999999999999988889999973      46999999


Q ss_pred             hHhhhhcccc
Q psy10189        130 LVEYHRTASV  139 (376)
Q Consensus       130 li~~~~~~~~  139 (376)
                      ||+||+.++.
T Consensus        82 LV~~y~~~~~   91 (103)
T 1i3z_A           82 LVSKYGKPGQ   91 (103)
T ss_dssp             HHHHTTSSSS
T ss_pred             HHHHHhhCCC
Confidence            9999998753

>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=6.4e-17  Score=124.95  Aligned_cols=94  Identities=31%  Similarity=0.512  Sum_probs=83.4

Q ss_pred             eeccccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeec
Q psy10189         47 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFN  125 (376)
Q Consensus        47 ~vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~  125 (376)
                      --+.+..++...+||||.|+|++|+.+|...++|+||||.|.+.++.|+||+..++.++|++|... ++.|++.+ ..|.
T Consensus         5 ~~~~~~~~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~   83 (118)
T 2dlz_A            5 SSGSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEK-DNWIHITEAKKFD   83 (118)
T ss_dssp             CCCSCCCCGGGSTTEEESCCHHHHHHHHHHSCTTBEEEECCSCSSCCEEEEEECSSSEEEEEEEEE-TTEEESTTSCCBS
T ss_pred             cCCCCccccccCCceecCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEc-CCEEEEeCCcccC
Confidence            345566778889999999999999999999999999999999999999999999999999999974 67788875 4599


Q ss_pred             chhhhHhhhhcccccc
Q psy10189        126 SLNELVEYHRTASVSR  141 (376)
Q Consensus       126 sl~~li~~~~~~~~~~  141 (376)
                      ||.+||+||+..++..
T Consensus        84 sl~~LV~~y~~~~l~~   99 (118)
T 2dlz_A           84 SLLELVEYYQCHSLKE   99 (118)
T ss_dssp             SHHHHHHHHTTSCTTT
T ss_pred             CHHHHHHHHhhCcccc
Confidence            9999999999887643

>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*

Probab=99.70  E-value=1.3e-16  Score=120.64  Aligned_cols=85  Identities=25%  Similarity=0.423  Sum_probs=77.0

Q ss_pred             cccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec------eeecchh
Q psy10189         56 KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV------VKFNSLN  128 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~------~~f~sl~  128 (376)
                      ...+||||.|+|++|+.+|.. .++|+||||.|++.++.|+||+..++.++|++|....+|.|.+..      ..|.|+.
T Consensus         2 ~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~   81 (104)
T 1d4t_A            2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK   81 (104)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSHH
T ss_pred             CCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCCeEEEeccCCCCCcccCCHH
Confidence            467899999999999999976 599999999999999999999999999999999988888999984      4599999


Q ss_pred             hhHhhhhccccc
Q psy10189        129 ELVEYHRTASVS  140 (376)
Q Consensus       129 ~li~~~~~~~~~  140 (376)
                      +||+||+.++..
T Consensus        82 ~LV~~y~~~~~~   93 (104)
T 1d4t_A           82 NLISAFQKPDQG   93 (104)
T ss_dssp             HHHHHHTSSSSS
T ss_pred             HHHHHHhhCCCC
Confidence            999999988643

>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A

Probab=99.69  E-value=1e-16  Score=119.82  Aligned_cols=85  Identities=29%  Similarity=0.516  Sum_probs=76.2

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHhh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEY  133 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~  133 (376)
                      +...+||||.|+|++|+.+|...++|+||||.|.+.++.|+||+..++.++|++|.. .++.|++.+ ..|.|+.+||+|
T Consensus         2 L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~-~~~~~~~~~~~~F~sl~~Lv~~   80 (98)
T 3us4_A            2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLH-RDGHLTIDEAVFFCNLMDMVEH   80 (98)
T ss_dssp             CTTCTTBCCSCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEE-ETTEEESSSSSEESSHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHccCCCCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEE-eCCEEEECCCCccCCHHHHHHH
Confidence            456789999999999999999889999999999999999999999999999999987 456777765 459999999999


Q ss_pred             hhccccc
Q psy10189        134 HRTASVS  140 (376)
Q Consensus       134 ~~~~~~~  140 (376)
                      |+.++..
T Consensus        81 y~~~~~~   87 (98)
T 3us4_A           81 YSKDKGA   87 (98)
T ss_dssp             HHHCCTT
T ss_pred             hhhCCCC
Confidence            9988743

>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=3e-17  Score=127.03  Aligned_cols=91  Identities=36%  Similarity=0.650  Sum_probs=79.7

Q ss_pred             cccccc----ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-ee
Q psy10189         49 PSNYIE----MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VK  123 (376)
Q Consensus        49 P~nyve----~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~  123 (376)
                      |.+||+    +...+||||.|+|++|+.+|....+|+||||.|.+.++.|+||+..++.++|++|....+|.|++.. ..
T Consensus         3 ~~~~vap~~~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~   82 (119)
T 2ecd_A            3 SGSSGTPVNSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESR   82 (119)
T ss_dssp             CCCCCCSSCCCCCSSSEEEECCHHHHHHHHHTSCTTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSSCCCCCSSCC
T ss_pred             CCcccccccccccCccccCCCCHHHHHHHhcCCCCCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCCCEEEcCCCc
Confidence            345554    4567899999999999999998899999999999999999999999999999999987788887764 45


Q ss_pred             ecchhhhHhhhhcccc
Q psy10189        124 FNSLNELVEYHRTASV  139 (376)
Q Consensus       124 f~sl~~li~~~~~~~~  139 (376)
                      |.||.+||+||+....
T Consensus        83 F~sl~~LV~~y~~~~~   98 (119)
T 2ecd_A           83 FSTLAELVHHHSTVAD   98 (119)
T ss_dssp             CSSHHHHHHHHHHCCT
T ss_pred             CCCHHHHHHHHhhCCC
Confidence            9999999999998753

>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1

Probab=99.69  E-value=1.1e-16  Score=122.02  Aligned_cols=82  Identities=33%  Similarity=0.647  Sum_probs=74.8

Q ss_pred             ccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCC-----------------CcEEEec
Q psy10189         59 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS-----------------GKFFLWV  121 (376)
Q Consensus        59 ~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~-----------------~~~~~~~  121 (376)
                      +||||.|+|++|+.+|.+.++|+||||+|.+.++.|+||+..++.++|++|.....                 +.|.+..
T Consensus         1 ~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~~~l~~   80 (109)
T 1ju5_A            1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGD   80 (109)
T ss_dssp             CCEETTCCHHHHHHHHTTCCTTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCCEEETT
T ss_pred             CccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccEEEeCC
Confidence            59999999999999999889999999999999999999999999999999987653                 4688877


Q ss_pred             eeecchhhhHhhhhccccc
Q psy10189        122 VKFNSLNELVEYHRTASVS  140 (376)
Q Consensus       122 ~~f~sl~~li~~~~~~~~~  140 (376)
                      ..|+|+.+||+||+.+++.
T Consensus        81 ~~F~sl~~LV~~y~~~~l~   99 (109)
T 1ju5_A           81 QEFDSLPALLEFYKIHYLD   99 (109)
T ss_dssp             EEESSHHHHHHHHHHSCSS
T ss_pred             cccCCHHHHHHHHhhCCCC
Confidence            7799999999999988765

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=99.69  E-value=1e-15  Score=125.20  Aligned_cols=164  Identities=20%  Similarity=0.305  Sum_probs=131.1

Q ss_pred             cccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEe-CCeeEEEEEEEcCCCcEEEeceeecchhhhHh
Q psy10189         54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKC-SDGVQHFKVLRDSSGKFFLWVVKFNSLNELVE  132 (376)
Q Consensus        54 e~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~-~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~  132 (376)
                      +.+..|+|+ +++..+|++.|... +|.|++|+|.. ++.++++++. ++.++|+.|...+ ..+.+++..|.+|+|+|.
T Consensus        10 R~I~HP~F~-n~s~~qAe~~L~~~-~G~~liRPSsk-~~~ltit~Kv~d~~~~Hi~I~E~~-k~l~ig~~~fedLDElI~   85 (178)
T 2xp1_A           10 RFYKHPLFK-NFNVTESENYLRSS-TDDFLIRKGSR-HGYCVLVIKFASDVFVHMKIEEHS-EHYTCSNKHFEDIDEVIS   85 (178)
T ss_dssp             GGGGSTTEE-CCCHHHHHHHHHHS-SCCEEEEECSS-TTEEEEEEEEETTEEEEEEEEECS-SCEEETTEEESSHHHHHH
T ss_pred             eeccCCCcC-CCCHHHHHHHHhcC-CCCEEEeecCC-CCcEEEEEEECCCcEEEEEEEECC-CEEEECCcEECCHHHHHH
Confidence            467789998 69999999999995 49999999987 7789999995 7788999998655 467888888999999999


Q ss_pred             hhhcccccccccccccCCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        133 YHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      +|..+- .              ..+.                                                      
T Consensus        86 ~yv~pm-~--------------~~~~------------------------------------------------------   96 (178)
T 2xp1_A           86 VYVRPI-L--------------RNLK------------------------------------------------------   96 (178)
T ss_dssp             HTHHHH-H--------------HHHH------------------------------------------------------
T ss_pred             HHHHHH-H--------------HHHH------------------------------------------------------
Confidence            996621 1              0000                                                      


Q ss_pred             cchhhhccCCCCCCccccccccccccccccccChHHHHHhhcCCCC--CceEEeecCCCCCceEEEEEeCCeeEEEEEEE
Q psy10189        213 MNWYRAELDGKEGLIPSNYIEMKNHDWYYGRITRADAERLLSNKHE--GAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR  290 (376)
Q Consensus       213 ~~~~~~~~~~~~g~~p~~~~~~~~~~w~~g~i~r~~ae~~L~~~~~--G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~  290 (376)
                                          ++...+||++  ++++|+++|....+  -.|.++.+...+|.|+|++. .+.++|-.|..
T Consensus        97 --------------------~~~~h~kf~~--s~~~~e~~L~~~~p~~~~Y~f~~s~~~PG~f~l~~~-~~~~~~e~i~V  153 (178)
T 2xp1_A           97 --------------------SIKAHAKYFN--SPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYN-NGSILEEYIGV  153 (178)
T ss_dssp             --------------------HHHHSTTBCS--CTTTSHHHHHTCCSSSCEEEEEECSSSTTEEEEEEE-SSSEEEEEEEE
T ss_pred             --------------------HHHhCCccCC--CHHHHHHHHHHhCCCCceEEEEecCCCCCeEEEEEc-CCCCceeeEEE
Confidence                                0455689998  89999999975422  23999999889999999997 66788777766


Q ss_pred             cCCCcEEEeccccCCHHHHHHHHhh
Q psy10189        291 DSSGKFFLWVVKFNSLNELVEYHRT  315 (376)
Q Consensus       291 ~~~~~~~~~~~~f~sl~~lv~~y~~  315 (376)
                      . .| |...++.|+||.+||+||++
T Consensus       154 ~-~g-~~~~~~~f~sl~~L~~~fK~  176 (178)
T 2xp1_A          154 S-DM-LTYNNSTFKDIDSFVAYRKR  176 (178)
T ss_dssp             S-SS-EEETTEEESSHHHHHHHHHC
T ss_pred             c-cC-CEEcCcCCcCHHHHHHHHhh
Confidence            6 45 55688999999999999975

>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A

Probab=99.69  E-value=1.4e-16  Score=122.21  Aligned_cols=86  Identities=41%  Similarity=0.701  Sum_probs=78.1

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHhh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEY  133 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~  133 (376)
                      +...+||||.|+|++|+.+|...++|+||||.|.+.++.|+||+..++.++|++|....+|.|++.+. .|.|+.+||+|
T Consensus         2 L~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~   81 (112)
T 3k2m_A            2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH   81 (112)
T ss_dssp             GGGSTTEEESCCHHHHHHHTTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHHHHH
T ss_pred             CccCcceeeCCCHHHHHHHhccCCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHHHHH
Confidence            45678999999999999999988999999999999999999999999999999999888888888654 59999999999


Q ss_pred             hhccccc
Q psy10189        134 HRTASVS  140 (376)
Q Consensus       134 ~~~~~~~  140 (376)
                      |+.....
T Consensus        82 y~~~~~~   88 (112)
T 3k2m_A           82 HSTVADG   88 (112)
T ss_dssp             HHHCCTT
T ss_pred             HhhCCCC
Confidence            9987543

>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.68  E-value=1.8e-16  Score=122.79  Aligned_cols=88  Identities=31%  Similarity=0.510  Sum_probs=79.7

Q ss_pred             ccccccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec------eeec
Q psy10189         53 IEMKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV------VKFN  125 (376)
Q Consensus        53 ve~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~------~~f~  125 (376)
                      -.+...+||||.|+|++|+.+|.. .++|+||||.|.+.++.|+||+..++.++|++|....+|.|++..      ..|.
T Consensus         5 ~~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~   84 (119)
T 2ysx_A            5 SSGMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFT   84 (119)
T ss_dssp             CSSCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTSCEEECCSCSSSCCCBS
T ss_pred             cCCCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeccCCcCCcccC
Confidence            345678999999999999999987 899999999999999999999999999999999988888999885      4599


Q ss_pred             chhhhHhhhhccccc
Q psy10189        126 SLNELVEYHRTASVS  140 (376)
Q Consensus       126 sl~~li~~~~~~~~~  140 (376)
                      ||.+||+||+..+..
T Consensus        85 sl~eLV~~y~~~~~~   99 (119)
T 2ysx_A           85 KLDQLIEFYKKENMG   99 (119)
T ss_dssp             SHHHHHHHTTSSSSS
T ss_pred             CHHHHHHHHhhCCCC
Confidence            999999999988754

>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A

Probab=99.68  E-value=1.7e-16  Score=122.20  Aligned_cols=86  Identities=36%  Similarity=0.619  Sum_probs=76.7

Q ss_pred             ccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEe----CCeeEEEEEEEcCCCcEEEec-eeecch
Q psy10189         55 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC----SDGVQHFKVLRDSSGKFFLWV-VKFNSL  127 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~----~~~v~h~~I~~~~~~~~~~~~-~~f~sl  127 (376)
                      +...+||||.|+|++|+.+|..  .++|+||||.|.+.++.|+||+..    ++.++|++|....+|.|++.+ ..|.|+
T Consensus         9 l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl   88 (114)
T 1blj_A            9 LEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTL   88 (114)
T ss_dssp             SCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESSH
T ss_pred             cccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCcccCCH
Confidence            3468999999999999999986  589999999999999999999998    688999999988788888875 459999


Q ss_pred             hhhHhhhhccccc
Q psy10189        128 NELVEYHRTASVS  140 (376)
Q Consensus       128 ~~li~~~~~~~~~  140 (376)
                      .+||+||+..+..
T Consensus        89 ~~LV~~y~~~~~~  101 (114)
T 1blj_A           89 QALVQHYSKKGDG  101 (114)
T ss_dssp             HHHHHHHHHCCSS
T ss_pred             HHHHHHhhhCCCC
Confidence            9999999988644

>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}

Probab=99.68  E-value=6.8e-17  Score=128.95  Aligned_cols=94  Identities=29%  Similarity=0.450  Sum_probs=78.7

Q ss_pred             cceecccccc----ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe
Q psy10189         45 EGLIPSNYIE----MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW  120 (376)
Q Consensus        45 ~G~vP~nyve----~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~  120 (376)
                      .+..|++|++    +...+||||.|+|++|+.+|.+.++|+||||.|.+.++.|+||+..++.++|++|... +|.|.+.
T Consensus         7 ~~~~~~~~v~~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~-~g~~~l~   85 (141)
T 2vif_A            7 GPMDVTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHS-NGRFSFY   85 (141)
T ss_dssp             -------HHHHHHHHHHHTCBCCSCCHHHHHHHTTTSCTTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEE-TTEEEET
T ss_pred             CCCchhhhhcchhhhccCCCcccCCCHHHHHHHhcCCCCceEEEEecCCCCCCEEEEEEECCEEEEEEEEEE-CCEEEEe
Confidence            4566788886    3457899999999999999998899999999999999999999999999999999986 7889888


Q ss_pred             ----ceeecchhhhHhhhhcccc
Q psy10189        121 ----VVKFNSLNELVEYHRTASV  139 (376)
Q Consensus       121 ----~~~f~sl~~li~~~~~~~~  139 (376)
                          ...|.|+.+||+||+..++
T Consensus        86 ~~~~~~~F~sl~eLI~~y~~~~~  108 (141)
T 2vif_A           86 EQPDVEGHTSIVDLIEHSIGDSE  108 (141)
T ss_dssp             TCCSCCCBSSHHHHHHHHHHHHH
T ss_pred             ecCCCCccCCHHHHHHHHhhCCC
Confidence                3459999999999998763

>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}

Probab=99.68  E-value=5.6e-17  Score=159.97  Aligned_cols=95  Identities=33%  Similarity=0.457  Sum_probs=80.3

Q ss_pred             ccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEE-eccccCCHHHHHHHHh
Q psy10189        237 HDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHR  314 (376)
Q Consensus       237 ~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~-~~~~f~sl~~lv~~y~  314 (376)
                      ++||||.|+|.+||++|.. .++|+||||.|++.+|.|+|||+.++.|+||+|... ++.|++ ++..|+||.+||+||+
T Consensus         2 ~~Wy~g~isr~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~eLv~~y~   80 (595)
T 3ps5_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNS-GDFYDLYGGEKFATLTELVEYYT   80 (595)
T ss_dssp             CSCCCSSCCHHHHHHHHHHHCCTTCEEEEECSSSTTSEEEEEEETTEEEEEEEEEC-SSCEESSSSCCBSSHHHHHHHHH
T ss_pred             CCccCCCCCHHHHHHHHhhCCCCCEEEEeecCCCCCceEEEEEECCEEEEEEEEeC-CCcEEEecCccccchhhhhhhhc
Confidence            5899999999999999974 479999999999999999999999999999999864 455655 4689999999999999


Q ss_pred             hCCcCCc----ceeeeCCCCCc
Q psy10189        315 TASVSRS----QDVKLRDMVPE  332 (376)
Q Consensus       315 ~~~~~~~----~~~~L~~p~~~  332 (376)
                      .+++...    ..+.|.+|++.
T Consensus        81 ~~~~~l~~~~g~~i~L~~P~~~  102 (595)
T 3ps5_A           81 QQQGVLQDRDGTIIHLKYPLNC  102 (595)
T ss_dssp             TTSSCCBCSSCCBCCCCCBCCC
T ss_pred             cCcccccccccccccccccccc
Confidence            9876543    24566677653

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.68  E-value=1.3e-17  Score=127.36  Aligned_cols=80  Identities=25%  Similarity=0.738  Sum_probs=72.7

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccccCcchhhhccCCCCCCccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNY  231 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~  231 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.  +|+.|+||++||++++.                    
T Consensus        27 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~--------------------   86 (109)
T 2yt6_A           27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADS--------------------   86 (109)
T ss_dssp             CCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSS--------------------
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCc--------------------
Confidence            36789999999999999999999999999999999999985  89999999999998754                    


Q ss_pred             cccccccccccccChHHHHHhhcC
Q psy10189        232 IEMKNHDWYYGRITRADAERLLSN  255 (376)
Q Consensus       232 ~~~~~~~w~~g~i~r~~ae~~L~~  255 (376)
                        +...+||||.|+|.+||++|..
T Consensus        87 --~~~~~w~~g~isR~~Ae~lL~~  108 (109)
T 2yt6_A           87 --IQAEEWYFGKMGRKDAESGPSS  108 (109)
T ss_dssp             --CTTTHHHHHCCCSCCCCCCSCC
T ss_pred             --ccccccccCCcCHHHHHHHhhC
Confidence              4667899999999999999863

>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A

Probab=99.68  E-value=9.1e-17  Score=124.61  Aligned_cols=90  Identities=32%  Similarity=0.553  Sum_probs=78.9

Q ss_pred             cccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchh
Q psy10189         50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLN  128 (376)
Q Consensus        50 ~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~  128 (376)
                      .+-.++...+||||.|+|++|+.+|...++|+||||.|.+.++.|+||+..++.++|++|.... +.|++.+ ..|.|+.
T Consensus        14 ~~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~~~~l~~~~~F~sl~   92 (122)
T 2lnw_A           14 SREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKD-NWIHITEAKKFDSLL   92 (122)
T ss_dssp             CSCCCSTTSTTBCCSCCHHHHHHHHHHSCTTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEET-TEEESSSSCCBSSHH
T ss_pred             CccCCcccCcCCCcCCCHHHHHHHhcCCCCCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcC-CEEEECCCCeECCHH
Confidence            3445677889999999999999999988999999999999999999999999999999998754 5666665 4599999


Q ss_pred             hhHhhhhccccc
Q psy10189        129 ELVEYHRTASVS  140 (376)
Q Consensus       129 ~li~~~~~~~~~  140 (376)
                      +||+||+..++.
T Consensus        93 eLV~~y~~~~l~  104 (122)
T 2lnw_A           93 ELVEYYQCHSLK  104 (122)
T ss_dssp             HHHHHHHHSCGG
T ss_pred             HHHHHHhhCcCc
Confidence            999999998764

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.67  E-value=4.7e-17  Score=110.79  Aligned_cols=54  Identities=20%  Similarity=0.421  Sum_probs=48.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~   56 (376)
                      +++|+|||+|+.++||+|++||+|.|+++ .+++||.++  .+|++||||+|||+..
T Consensus         8 ~~~Alydy~a~~~~ELs~~~Gd~i~v~~~-~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            8 SYQALYSYIPQNDDELELRDGDIVDVMEK-CDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE-CTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             EEEEceeECCCCcCCcCCCCCCEEEEeEe-CCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            68999999999999999999999999997 566899987  4799999999999853

>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}

Probab=99.67  E-value=1.7e-16  Score=120.59  Aligned_cols=91  Identities=15%  Similarity=0.397  Sum_probs=75.1

Q ss_pred             ccccc-cccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEe---CCeeEEEEEEEcCCCcEEEec---e
Q psy10189         51 NYIEM-KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKC---SDGVQHFKVLRDSSGKFFLWV---V  122 (376)
Q Consensus        51 nyve~-~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~---~~~v~h~~I~~~~~~~~~~~~---~  122 (376)
                      +|+.. ...+||+++|+|.+|+.+|.. ..+|+||||+|++.+ +|+||+..   ++.|+||+|.+. +|.|+++.   .
T Consensus         7 ~~~~~l~~epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~-~G~y~I~~~~~~   84 (125)
T 3maz_A            7 DYVDVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSV-GQNYTIELEKPV   84 (125)
T ss_dssp             ----CCCCCCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEE-TTEEEECSSSCE
T ss_pred             cccccccCCCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEe-CCEEEEecCCCc
Confidence            56653 458999999999999998865 458999999998766 89999998   688999999988 68999984   2


Q ss_pred             eecchhhhHhhhhcccccccc
Q psy10189        123 KFNSLNELVEYHRTASVSRSQ  143 (376)
Q Consensus       123 ~f~sl~~li~~~~~~~~~~~~  143 (376)
                      .|+||.+||+||...+.+...
T Consensus        85 ~F~SL~eLV~yY~~~adGl~~  105 (125)
T 3maz_A           85 TLPNLFSVIDYFVKETRGNLR  105 (125)
T ss_dssp             EESSHHHHHHHHHHHTTTCCC
T ss_pred             CcCCHHHHHHHHHhCCCcCcc
Confidence            499999999999998876543

>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*

Probab=99.67  E-value=8.1e-17  Score=157.05  Aligned_cols=96  Identities=33%  Similarity=0.500  Sum_probs=82.0

Q ss_pred             ccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHHh
Q psy10189        237 HDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHR  314 (376)
Q Consensus       237 ~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y~  314 (376)
                      ++||||.|+|.+||++|... ++|+||||+|++.+|.|+|||+.++.|+||+|.. .++.|.+. +..|+||.+||+||+
T Consensus         2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~~~~~~~~~~~~F~sl~~Lv~~y~   80 (532)
T 2b3o_A            2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQN-SGDFYDLYGGEKFATLTELVEYYT   80 (532)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEETTEEEEEEEEC-SSSCEEETTSCEESCHHHHHHHHH
T ss_pred             CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEECCEEEEEEEEe-cCCEEEECCCcccCCHHHHHHHHH
Confidence            58999999999999999853 8999999999988999999999999999999975 56678785 689999999999999


Q ss_pred             hCCcCC----cceeeeCCCCCcc
Q psy10189        315 TASVSR----SQDVKLRDMVPEE  333 (376)
Q Consensus       315 ~~~~~~----~~~~~L~~p~~~~  333 (376)
                      .++..+    ...+.|++|++..
T Consensus        81 ~~~~~l~~~~g~~~~L~~P~~~~  103 (532)
T 2b3o_A           81 QQQGVLQDRDGTIIHLKYPLNCS  103 (532)
T ss_dssp             TTCSCBCCSSSCCBCCCEECCCC
T ss_pred             hcccccccccCchhhcccccccc
Confidence            987332    2456788887653

>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}

Probab=99.67  E-value=2.2e-16  Score=121.09  Aligned_cols=96  Identities=29%  Similarity=0.540  Sum_probs=80.3

Q ss_pred             cccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhh
Q psy10189         54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  133 (376)
Q Consensus        54 e~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~  133 (376)
                      .+...+||||.|+|++|+.+|.  ++|+||||.|.+.++.|+||+..++.++|++|.. .+|.|.+.+..|.|+.+||+|
T Consensus        13 ~~~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~-~~g~y~~~~~~F~sl~eLV~~   89 (116)
T 2kk6_A           13 PLAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQY-VDNMYRFEGTGFSNIPQLIDH   89 (116)
T ss_dssp             CTTTCTTEEESCCHHHHHHTCC--STTCEEEEECTTCTTCEEEEEEETTEEEEEEEEE-ETTEEESSSCEESCHHHHHHH
T ss_pred             ccccCCCccCCCCHHHHHHHhc--cCCcEEEEECCCCCCcEEEEEEECCeEEEEEEEe-cCCEEEECCCEeCCHHHHHHH
Confidence            3556789999999999999998  6999999999999999999999999999999986 567888877789999999999


Q ss_pred             hhcccccc--cccccccCCCc
Q psy10189        134 HRTASVSR--SQDVKLRDMVP  152 (376)
Q Consensus       134 ~~~~~~~~--~~~~~~~~~~~  152 (376)
                      |+......  ...+.|..|.+
T Consensus        90 y~~~~~~i~~~~~~~L~~Pv~  110 (116)
T 2kk6_A           90 HYTTKQVITKKSGVVLLNPIP  110 (116)
T ss_dssp             HHHTTCCSCTTTTCCCCSCCC
T ss_pred             HhhCCCCccCCCCCeECcccC
Confidence            99875432  23344555443

>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1

Probab=99.67  E-value=7.1e-17  Score=157.22  Aligned_cols=98  Identities=33%  Similarity=0.504  Sum_probs=83.6

Q ss_pred             ccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        235 KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ..++||||.|+|.+||++|.. .++|+||||+|++.+|.|+||++.++.|+||+|.. .++.|.+. ...|+||.+||+|
T Consensus         2 ~~~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~~~~~~l~~~~~F~sl~eLv~~   80 (525)
T 2shp_A            2 KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQN-TGDYYDLYGGEKFATLAELVQY   80 (525)
T ss_dssp             CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEC-SSSCEEETTSCEESSHHHHHHH
T ss_pred             CCCCcccCCCCHHHHHHHHHhCCCCCcEEeeccCCCCCcEEEEEEECCEEEEEEEEe-cCCeEEECCCCeECCHHHHHHH
Confidence            457999999999999999964 48999999999988999999999999999999975 45677776 6899999999999


Q ss_pred             HhhCCcCCc----ceeeeCCCCCcc
Q psy10189        313 HRTASVSRS----QDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~----~~~~L~~p~~~~  333 (376)
                      |+.++....    ..+.|++|++..
T Consensus        81 y~~~~~~l~~~~g~~i~L~~Pv~~~  105 (525)
T 2shp_A           81 YMEHHGQLKEKNGDVIELKYPLNCA  105 (525)
T ss_dssp             HHTCTTCSBSSSSCBCCCCEECCCC
T ss_pred             HHhCCcccccccccccccccccccc
Confidence            999986542    356778877653

>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*

Probab=99.67  E-value=2.8e-16  Score=119.08  Aligned_cols=85  Identities=39%  Similarity=0.653  Sum_probs=76.0

Q ss_pred             cccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEec-eeecch
Q psy10189         56 KNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWV-VKFNSL  127 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~-~~f~sl  127 (376)
                      ...+||||.|+|++|+.+|..  .++|+||||.|.+.++.|+||+..     ++.++|++|....+|.|++.+ ..|.|+
T Consensus         2 ~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl   81 (105)
T 1lkk_A            2 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGL   81 (105)
T ss_dssp             CCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSH
T ss_pred             CcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCCH
Confidence            457899999999999999985  589999999999999999999998     678999999988888888875 459999


Q ss_pred             hhhHhhhhccccc
Q psy10189        128 NELVEYHRTASVS  140 (376)
Q Consensus       128 ~~li~~~~~~~~~  140 (376)
                      .+||+||+..+..
T Consensus        82 ~~LI~~y~~~~~~   94 (105)
T 1lkk_A           82 HELVRHYTNASDG   94 (105)
T ss_dssp             HHHHHHHHHCCTT
T ss_pred             HHHHHHHhhCCCC
Confidence            9999999987643

>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A

Probab=99.67  E-value=4.3e-16  Score=122.10  Aligned_cols=85  Identities=25%  Similarity=0.423  Sum_probs=77.0

Q ss_pred             cccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec------eeecchh
Q psy10189         56 KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV------VKFNSLN  128 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~------~~f~sl~  128 (376)
                      ...+||||.|+|++|+.+|.. .++|+||||.|++.++.|+||+..++.++|++|....+|.|++..      ..|.|+.
T Consensus         2 ~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~sl~   81 (128)
T 1ka6_A            2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK   81 (128)
T ss_dssp             CCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTSCEEEECSTTSCCCEESSHH
T ss_pred             CCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCCeEEEeecCCCCCCccCCHH
Confidence            457899999999999999975 689999999999999999999999999999999988888999983      5699999


Q ss_pred             hhHhhhhccccc
Q psy10189        129 ELVEYHRTASVS  140 (376)
Q Consensus       129 ~li~~~~~~~~~  140 (376)
                      +||+||+..+..
T Consensus        82 ~LV~~y~~~~~g   93 (128)
T 1ka6_A           82 NLISAFQKPDQG   93 (128)
T ss_dssp             HHHHHTTSSCSS
T ss_pred             HHHHHHhhCCCC
Confidence            999999987643

>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A

Probab=99.67  E-value=2.6e-16  Score=119.42  Aligned_cols=85  Identities=33%  Similarity=0.572  Sum_probs=76.8

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHhh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEY  133 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~  133 (376)
                      +...+||||.|+|++|+.+|...++|+||||.|.+.++.|+||+..++.++|++|... +|.|++.+. .|.|+.+||+|
T Consensus         5 L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~sl~~Lv~~   83 (106)
T 3eaz_A            5 LSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYH-ASKLSIDEEVYFENLMQLVEH   83 (106)
T ss_dssp             GGGCTTBCCSCCHHHHHHHTCSCCTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEE-TTEEESSSSSCBSSHHHHHHH
T ss_pred             cccCCCcCCCCCHHHHHHHhCCCCCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEec-CCEEEECCCCccCCHHHHHHH
Confidence            5668999999999999999998899999999999999999999999999999999864 678888754 59999999999


Q ss_pred             hhccccc
Q psy10189        134 HRTASVS  140 (376)
Q Consensus       134 ~~~~~~~  140 (376)
                      |+.++..
T Consensus        84 y~~~~~g   90 (106)
T 3eaz_A           84 YTSDADG   90 (106)
T ss_dssp             HHHCCTT
T ss_pred             HhhCCCC
Confidence            9987644

>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A

Probab=99.67  E-value=1.9e-16  Score=122.79  Aligned_cols=85  Identities=27%  Similarity=0.611  Sum_probs=76.8

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCC-CCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVE  132 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~  132 (376)
                      +...+||||.|+|++|+.+|...++|+||||.|.+. ++.|+||+..++.++|++|... +|.|.+.. ..|.|+.+||+
T Consensus         8 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~-~g~~~l~~~~~F~sl~~LI~   86 (120)
T 2iug_A            8 LQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHR-DGKYGFSDPLTFSSVVELIN   86 (120)
T ss_dssp             HHTCTTBCCSCCHHHHHHHHTTCCTTEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEE-TTEEESSSSCCBSSHHHHHH
T ss_pred             cccCCccccCCCHHHHHHHhcCCCCcEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEc-CCEEEECCCCccCCHHHHHH
Confidence            456789999999999999999999999999999988 8999999999999999999886 67787765 45999999999


Q ss_pred             hhhccccc
Q psy10189        133 YHRTASVS  140 (376)
Q Consensus       133 ~~~~~~~~  140 (376)
                      ||+..++.
T Consensus        87 ~y~~~~~~   94 (120)
T 2iug_A           87 HYRNESLA   94 (120)
T ss_dssp             HHHHSCGG
T ss_pred             HHHhCccc
Confidence            99988765

>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*

Probab=99.66  E-value=1.9e-16  Score=119.51  Aligned_cols=82  Identities=29%  Similarity=0.592  Sum_probs=74.8

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  134 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~  134 (376)
                      +...+||||.|+|++|+.+|.  .+|+||||.|.+.++.|+||+..++.++|++|. ..+|.|.+....|.|+.+||+||
T Consensus         4 l~~~~Wyhg~isR~~Ae~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~-~~~g~~~~~~~~F~sl~~LI~~y   80 (104)
T 1mil_A            4 LRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-DPEGVVRTKDHRFESVSHLISYH   80 (104)
T ss_dssp             TTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEB-CTTSSEECSSCEESSHHHHHHHH
T ss_pred             cccCCcCCCCCCHHHHHHHhc--cCCcEEEEeCCCCCCCEEEEEEECCEEEEEEEE-eCCCEEEECCceeCCHHHHHHHH
Confidence            456789999999999999998  799999999999999999999999999999996 56788888877899999999999


Q ss_pred             hcccc
Q psy10189        135 RTASV  139 (376)
Q Consensus       135 ~~~~~  139 (376)
                      +.++.
T Consensus        81 ~~~~~   85 (104)
T 1mil_A           81 MDNHL   85 (104)
T ss_dssp             HHHTC
T ss_pred             hhCCC
Confidence            98764

>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A

Probab=99.66  E-value=2.1e-16  Score=121.00  Aligned_cols=86  Identities=31%  Similarity=0.448  Sum_probs=75.5

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHhh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEY  133 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~  133 (376)
                      +...+||||.|+|++|+.+|.+.++|+||||.| +.++.|+||+..++.++|++|....+|.++... ..|.|+.+||+|
T Consensus         7 ~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S-~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV~~   85 (112)
T 1h9o_A            7 HDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLH   85 (112)
T ss_dssp             GSGGGTBCCSCCHHHHHHHHTTCCTTEEEEEEC-SSTTCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHHHH
T ss_pred             ccCCCcccCCCCHHHHHHHhcCCCCceEEEeec-CCCCCEEEEEEECCEEEEEEEEEcCCceEEeCCCCCcCCHHHHHHH
Confidence            467899999999999999999899999999999 889999999999999999999987776555443 359999999999


Q ss_pred             hhcccccc
Q psy10189        134 HRTASVSR  141 (376)
Q Consensus       134 ~~~~~~~~  141 (376)
                      |+.+++..
T Consensus        86 y~~~~l~~   93 (112)
T 1h9o_A           86 YQHTSLVQ   93 (112)
T ss_dssp             HHHSCGGG
T ss_pred             HhhCcccc
Confidence            99876543

>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}

Probab=99.66  E-value=4.1e-16  Score=121.56  Aligned_cols=98  Identities=29%  Similarity=0.560  Sum_probs=74.6

Q ss_pred             Cccceecccccc-ccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEc-CCCcEE
Q psy10189         43 GKEGLIPSNYIE-MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD-SSGKFF  118 (376)
Q Consensus        43 g~~G~vP~nyve-~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~-~~~~~~  118 (376)
                      -..|+||..-.+ +...+||||.|+|++|+.+|..  .++|+||||.|++.++.|+||+..++.++|++|... .+|.|+
T Consensus        10 ~~~~~~~~~~~~~l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~G~~~   89 (126)
T 2aug_A           10 HSSGLVPRGSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMF   89 (126)
T ss_dssp             ------------CGGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEETTEEE
T ss_pred             ccCcccccCCccccccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECCCCeEE
Confidence            346888875544 4567899999999999999987  379999999999999999999999999999999875 467666


Q ss_pred             Ee----ceeecchhhhHhhhhccccc
Q psy10189        119 LW----VVKFNSLNELVEYHRTASVS  140 (376)
Q Consensus       119 ~~----~~~f~sl~~li~~~~~~~~~  140 (376)
                      +.    ...|.|+.+||+||+.++..
T Consensus        90 ~~l~~~~~~F~SL~eLV~~y~~~~~~  115 (126)
T 2aug_A           90 HTLDDGHTRFTDLIQLVEFYQLNKGV  115 (126)
T ss_dssp             EESSTTSSCBSSHHHHHHHHTTCCTT
T ss_pred             EEeCCCCCccCCHHHHHHHHhhCCCC
Confidence            52    24599999999999987654

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.65  E-value=8.8e-17  Score=107.80  Aligned_cols=55  Identities=27%  Similarity=0.700  Sum_probs=51.1

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      |+++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~   56 (58)
T 2bz8_A            2 VEAIVEFDYQAQHDDELTISVGEIITNIRK-EDGGWWEGQINGRRGLFPDNFVREI   56 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcccCCCCcCEeeECCCCEEEEEEe-CCCCEEEEEECCeEEEEehHHeEEc
Confidence            589999999999999999999999999997 5678999999999999999999854

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.64  E-value=1.2e-16  Score=108.63  Aligned_cols=57  Identities=25%  Similarity=0.647  Sum_probs=52.0

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      |+++|+|||+++.++||+|++||+|.|+++..+++||.++.+|+.||||+|||+...
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   58 (62)
T 2j6f_A            2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIK   58 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECC
Confidence            479999999999999999999999999997456789999999999999999998654

>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}

Probab=99.64  E-value=1.1e-16  Score=130.01  Aligned_cols=100  Identities=25%  Similarity=0.376  Sum_probs=85.7

Q ss_pred             cccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--------ee
Q psy10189         52 YIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--------VK  123 (376)
Q Consensus        52 yve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~--------~~  123 (376)
                      +..+...+||||.|+|++|+.+|.+.++|+||||+|.+.++.|+||+..++.++|++|.. .+|.|++..        ..
T Consensus        17 ~~~L~~~~WyhG~IsR~eAe~lL~~~~~GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~-~~g~f~l~~~~~~~~~~~~   95 (164)
T 2bbu_A           17 VRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQC-EGGSFSLQSDPRSTQPVPR   95 (164)
T ss_dssp             HHHHHHTSCCCTTSCHHHHHHHHHHSSTTCCEEEECSTTSCCEEEEECCTTCCEEEECEE-ETTEEESSSCCCCCSSCTT
T ss_pred             hhhhccCCccCCCCCHHHHHHHhcCCCCCCEEEEECCCCCCCEEEEEEECCceEEEEEEe-CCCeEEEecCcccccCCCc
Confidence            334567899999999999999998899999999999999999999999999999999997 677888876        35


Q ss_pred             ecchhhhHhhhhcccccccccccccCCCc
Q psy10189        124 FNSLNELVEYHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       124 f~sl~~li~~~~~~~~~~~~~~~~~~~~~  152 (376)
                      |+|+.+||+||+..+....-...+..|.|
T Consensus        96 F~SL~eLV~~Y~~~~~~~~~~~~l~ep~~  124 (164)
T 2bbu_A           96 FDCVLKLVHHYMPPPGTPSFSLPPTEPSS  124 (164)
T ss_dssp             CCHHHHHHHHHSCCCSCSCCSSSCSSCCS
T ss_pred             cCCHHHHHHHHhhCCCCCCccccccCCCc
Confidence            99999999999998876554555555544

>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}

Probab=99.64  E-value=9.3e-16  Score=121.76  Aligned_cols=97  Identities=32%  Similarity=0.559  Sum_probs=79.8

Q ss_pred             ccccccccccC-CHHHHHHHhcC------CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC---cEEEec-ee
Q psy10189         55 MKNHDWYYGRI-TRADAERLLSN------KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---KFFLWV-VK  123 (376)
Q Consensus        55 ~~~~~w~~g~i-sr~~ae~~l~~------~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~---~~~~~~-~~  123 (376)
                      +...+||||.| +|++|+.+|..      ..+|+||||.|.+.++.|+||+..++.++|++|....++   .|++.+ ..
T Consensus        19 ~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~gg~~~~~l~~~~~   98 (138)
T 2dx0_A           19 HFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLT   98 (138)
T ss_dssp             TSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSC
T ss_pred             ccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCCCceEEEeCCCCc
Confidence            45678999999 89999999984      699999999999999999999999999999999976543   677765 45


Q ss_pred             ecchhhhHhhhhcccccc-cccccccCCC
Q psy10189        124 FNSLNELVEYHRTASVSR-SQDVKLRDMV  151 (376)
Q Consensus       124 f~sl~~li~~~~~~~~~~-~~~~~~~~~~  151 (376)
                      |.||.+||+||+..++.. ...+.|..|.
T Consensus        99 F~sl~eLI~~y~~~~l~~~gl~~~L~~Pv  127 (138)
T 2dx0_A           99 FNSIYALIQHYREAHLRCAEFELRLTDPV  127 (138)
T ss_dssp             BSSHHHHHHHTTTSCCCCGGGSSCCCCBC
T ss_pred             CCCHHHHHHHHhhCCCCCCCcccccCccC
Confidence            999999999999887632 1233444444

>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*

Probab=99.63  E-value=4.2e-16  Score=118.32  Aligned_cols=86  Identities=34%  Similarity=0.710  Sum_probs=76.1

Q ss_pred             ccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEec-eeecc
Q psy10189         55 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWV-VKFNS  126 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~-~~f~s  126 (376)
                      +...+||||.|+|++|+.+|..  .++|+||||.|++.++.|+||+..     ++.++|++|....+|.|++.+ ..|.|
T Consensus         2 l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   81 (106)
T 1aot_F            2 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFET   81 (106)
T ss_dssp             CCSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEESS
T ss_pred             CccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccCC
Confidence            4567899999999999999986  589999999999999999999996     788999999987788888875 45999


Q ss_pred             hhhhHhhhhccccc
Q psy10189        127 LNELVEYHRTASVS  140 (376)
Q Consensus       127 l~~li~~~~~~~~~  140 (376)
                      +.+||+||+.....
T Consensus        82 l~~LV~~y~~~~~~   95 (106)
T 1aot_F           82 LQQLVQHYSERAAG   95 (106)
T ss_dssp             HHHHHHHHTTCCTT
T ss_pred             HHHHHHHhccCCCC
Confidence            99999999987643

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=107.61  Aligned_cols=55  Identities=35%  Similarity=0.622  Sum_probs=51.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~fP~~yv~~~~   57 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKE-VDKNWLEGEHHGRLGIFPANYVEVLP   57 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEC-CTTTCEEEEETTEEEEECGGGEEECC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEe-cCCCEEEEEECCcEEEEehhhEEEcC
Confidence            59999999999999999999999999987 56789999999999999999998654

>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A

Probab=99.63  E-value=9.4e-16  Score=116.08  Aligned_cols=84  Identities=30%  Similarity=0.587  Sum_probs=70.5

Q ss_pred             ccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcC-CCc--EEEe--ceeecchhh
Q psy10189         57 NHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS-SGK--FFLW--VVKFNSLNE  129 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~-~~~--~~~~--~~~f~sl~~  129 (376)
                      ..+||||.|+|++|+.+|..  .++|+||||.|++.++.|+||+..++.++|++|.... +|.  |.+.  ...|+|+.+
T Consensus         4 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl~~   83 (105)
T 1nrv_A            4 TQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQ   83 (105)
T ss_dssp             TSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSHHH
T ss_pred             cCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCCCCEEEEEcCCCcccCCHHH
Confidence            56899999999999999986  3899999999999999999999999999999998754 453  4454  245999999


Q ss_pred             hHhhhhccccc
Q psy10189        130 LVEYHRTASVS  140 (376)
Q Consensus       130 li~~~~~~~~~  140 (376)
                      ||+||+.++..
T Consensus        84 LV~~y~~~~~~   94 (105)
T 1nrv_A           84 LVDFYQLNKGV   94 (105)
T ss_dssp             HHHHHTTCCTT
T ss_pred             HHHHhhhCCCC
Confidence            99999987643

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=99.63  E-value=2.1e-16  Score=151.18  Aligned_cols=104  Identities=27%  Similarity=0.445  Sum_probs=89.5

Q ss_pred             CCccceeecc--CCccceecccccc---ccccccc-----cccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeC
Q psy10189         32 DDMNWYRAEL--DGKEGLIPSNYIE---MKNHDWY-----YGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS  101 (376)
Q Consensus        32 ~~~~W~~~~~--~g~~G~vP~nyve---~~~~~w~-----~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~  101 (376)
                      .+.+||.++.  .|++|++|+||+.   +...+||     ||.|+|++|+.+|.. .+|+||||+|++.+|.|+||+..+
T Consensus        15 ~~~~ww~~~~~~~~~~g~~P~~~v~~~~~~~~~wy~~~w~hg~i~r~~ae~lL~~-~~G~FLvR~S~~~~g~~~Lsv~~~   93 (463)
T 3cxl_A           15 YFQGVWKSYLYQLQQEAPHPRRITCTCEVENRPKYYGREFHGMISREAADQLLIV-AEGSYLIRESQRQPGTYTLALRFG   93 (463)
T ss_dssp             ---CCSCCHHHHHHHHSCCCEECCCCCCCTTCCTTCCTTBCCSCCHHHHHHHHTT-STTEEEEEECSSSTTCEEEEEECS
T ss_pred             CCCCEEEEEecCcCccCCCCcCccCCccccCCCCccccccccCCCHHHHHHHHcC-CCCeEEEeccCCCCCCEEEEEEEC
Confidence            3457999983  5789999999996   4466777     999999999999975 689999999999999999999999


Q ss_pred             CeeEEEEEEEcCCCcEEEeceeecchhhhHh-----hhhccc
Q psy10189        102 DGVQHFKVLRDSSGKFFLWVVKFNSLNELVE-----YHRTAS  138 (376)
Q Consensus       102 ~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~-----~~~~~~  138 (376)
                      +.++|++|..  +|.|++.+..|+|+.+||+     +|....
T Consensus        94 ~~v~H~~I~~--~g~~~~~~~~F~sl~~Lv~dGl~~~~~~~~  133 (463)
T 3cxl_A           94 SQTRNFRLYY--DGKHFVGEKRFESIHDLVTDGLITLYIETK  133 (463)
T ss_dssp             SSEEEEECEE--SSSEESSSCCBSCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEec--CCeEEECCCccCCHHHHHHHHHHhhhccCC
Confidence            9999999987  6889888778999999999     887543

>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=5.7e-16  Score=120.32  Aligned_cols=103  Identities=20%  Similarity=0.284  Sum_probs=80.8

Q ss_pred             CCccceeeccCCccceecccccccc----ccccccccCCHHHHHHHhcC-C-CCccEEEeecCCCCCceEEEEEeC--Ce
Q psy10189         32 DDMNWYRAELDGKEGLIPSNYIEMK----NHDWYYGRITRADAERLLSN-K-HEGAFLIRVSESSPGDFSLSVKCS--DG  103 (376)
Q Consensus        32 ~~~~W~~~~~~g~~G~vP~nyve~~----~~~w~~g~isr~~ae~~l~~-~-~~G~flvR~s~~~~~~~~Ls~~~~--~~  103 (376)
                      ++++||.+      +++|+|||...    ..+|||         .++.. . .+|+||||+|+ .++.|+||+..+  +.
T Consensus         6 ~~~~~~~~------~~iPsnyv~~~~~l~~~~Wyh---------~Ll~~g~~~dG~FLVR~S~-~~g~y~LSv~~~~~~~   69 (126)
T 2cr4_A            6 SGEDYEKV------PLPNSVFVNTTESCEVERLFK---------ATSPRGEPQDGLYCIRNSS-TKSGKVLVVWDETSNK   69 (126)
T ss_dssp             CCCCCCSC------SSCTTTBCSCCCHHHHHHHHH---------HHSTTSCCCTTCEEEEECS-STTCEEEEEEETTTTE
T ss_pred             CCCCeEEc------CCCCHhhcCcccccccCCCHH---------HHhhCCCCCCCeEEEEecC-CCCCEEEEEEeCCCCC
Confidence            45578877      57999999854    478999         22222 2 35999999999 899999999999  99


Q ss_pred             eEEEEEEEcCCCcEEEece-eecchhhhHhhhhcccccccccccccCCC
Q psy10189        104 VQHFKVLRDSSGKFFLWVV-KFNSLNELVEYHRTASVSRSQDVKLRDMV  151 (376)
Q Consensus       104 v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~~~~~~~~~~~~~~~~~~~  151 (376)
                      |+|++|..... .|++.+. .|.||.+||+||+.+++.....+.|+.|.
T Consensus        70 vkH~rI~~~~~-~~~i~~~~~F~sL~eLV~hY~~~~l~~~~~~~L~~P~  117 (126)
T 2cr4_A           70 VRNYRIFEKDS-KFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPY  117 (126)
T ss_dssp             ECCEECEEETT-EEESSSSCEESSHHHHHHHHTTSCCSSSSSCCCCSBS
T ss_pred             EEEEEEEECCC-eEEEcCCccCCCHHHHHHHHhhCCcCCCCCEEeCCcC
Confidence            99999987665 7777654 69999999999999887655444555444

>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B

Probab=99.63  E-value=1.5e-15  Score=117.70  Aligned_cols=85  Identities=31%  Similarity=0.640  Sum_probs=74.9

Q ss_pred             ccccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeC------CeeEEEEEE--EcCCCcEEEece-ee
Q psy10189         55 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS------DGVQHFKVL--RDSSGKFFLWVV-KF  124 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~------~~v~h~~I~--~~~~~~~~~~~~-~f  124 (376)
                      +...+||||.|+|++|+.+|.. ..+|+||||.| +.++.|+||+...      +.++|++|.  ...+|.|++.+. .|
T Consensus         6 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~~~~~~~~~F   84 (118)
T 3s9k_A            6 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVF   84 (118)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEEC-SSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSCCEEEECSCCC
T ss_pred             cccCceecCCCCHHHHHHHHHhcCCCCeEEEEee-CCCCCEEEEEEecccccCCCceEEEEEeEEECCCCCEEECCCccc
Confidence            4567899999999999999987 57999999999 8899999999996      899999994  467788888765 59


Q ss_pred             cchhhhHhhhhccccc
Q psy10189        125 NSLNELVEYHRTASVS  140 (376)
Q Consensus       125 ~sl~~li~~~~~~~~~  140 (376)
                      .|+.+||+||+.++..
T Consensus        85 ~sl~~LV~~y~~~~~~  100 (118)
T 3s9k_A           85 DSIPLLIQYHQYNGGG  100 (118)
T ss_dssp             SCHHHHHHHHHHCCTT
T ss_pred             CCHHHHHHHheeCCCC
Confidence            9999999999988754

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.63  E-value=1.5e-16  Score=106.79  Aligned_cols=55  Identities=20%  Similarity=0.508  Sum_probs=49.4

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM   55 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~   55 (376)
                      |+++|+|||+++.++||+|++||+|.|+++.++++||.++.  +|++||||+|||++
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A            2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             -CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEEC
Confidence            57899999999999999999999999999744478999997  99999999999973

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.63  E-value=3.3e-16  Score=105.72  Aligned_cols=55  Identities=25%  Similarity=0.561  Sum_probs=50.7

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      +.++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+..
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSR-INKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEE-CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEe-CCCCeEEEEECCCEEEechHHEEEC
Confidence            479999999999999999999999999997 5678999999999999999999853

>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.62  E-value=6.5e-16  Score=127.10  Aligned_cols=89  Identities=31%  Similarity=0.492  Sum_probs=79.3

Q ss_pred             ccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--------e
Q psy10189         51 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--------V  122 (376)
Q Consensus        51 nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~--------~  122 (376)
                      +...+...+||||.|+|++|+.+|.+.++|+||||+|++.++.|+||+..++.++|++|... +|.|.+.+        .
T Consensus        10 ~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~-~g~~~l~~~~~~~~~~~   88 (169)
T 2c9w_A           10 ALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQ-DGKFRLDSIICVKSKLK   88 (169)
T ss_dssp             HHHHHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEE-TTEEEECTTTTTGGGCC
T ss_pred             HHHhcccCCccccCCCHHHHHHHcCCCCCcEEEEecCCCCCCeEEEEEEECCeeEEEEEEEe-CCEEEEccccCccccCC
Confidence            33446678999999999999999998999999999999999999999999999999999984 78898887        5


Q ss_pred             eecchhhhHhhhhccccc
Q psy10189        123 KFNSLNELVEYHRTASVS  140 (376)
Q Consensus       123 ~f~sl~~li~~~~~~~~~  140 (376)
                      .|+|+.+||+||+..+..
T Consensus        89 ~F~sl~eLI~~y~~~~~~  106 (169)
T 2c9w_A           89 QFDSVVHLIDYYVQMCKD  106 (169)
T ss_dssp             CBSCHHHHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHHHhCcCC
Confidence            699999999999987654

>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}

Probab=99.62  E-value=8.7e-16  Score=117.28  Aligned_cols=85  Identities=34%  Similarity=0.668  Sum_probs=75.2

Q ss_pred             ccccccccccCCHHHHHHHhcCC-CCccEEEeecCCCCCceEEEEEe------CCeeEEEEEEEcCCCcEEEece-eecc
Q psy10189         55 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC------SDGVQHFKVLRDSSGKFFLWVV-KFNS  126 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~-~~G~flvR~s~~~~~~~~Ls~~~------~~~v~h~~I~~~~~~~~~~~~~-~f~s  126 (376)
                      +...+||||.|+|++|+.+|... ++|+||||.| +.++.|+||+..      ++.++|++|....+|.|++.+. .|.|
T Consensus         8 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   86 (110)
T 2ekx_A            8 LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDS   86 (110)
T ss_dssp             TTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEEC-SSTTCEEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSC
T ss_pred             ccCCCeecCCCCHHHHHHHHhccCCCceEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCC
Confidence            45688999999999999999875 9999999999 679999999997      4689999999988888888754 5999


Q ss_pred             hhhhHhhhhccccc
Q psy10189        127 LNELVEYHRTASVS  140 (376)
Q Consensus       127 l~~li~~~~~~~~~  140 (376)
                      |.+||+||+..+..
T Consensus        87 l~~LV~~y~~~~~~  100 (110)
T 2ekx_A           87 IPKLIHYHQHNSAG  100 (110)
T ss_dssp             HHHHHHHHHHSCCS
T ss_pred             HHHHHHHHeeCCCC
Confidence            99999999987643

>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A

Probab=99.62  E-value=9.1e-16  Score=117.01  Aligned_cols=84  Identities=38%  Similarity=0.607  Sum_probs=71.9

Q ss_pred             ccccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ceeecchhhhHh
Q psy10189         55 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVE  132 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~li~  132 (376)
                      +...+||||.|+|++|+.+|.. .++|+||||.|.+.++.|+||+..++.++|++|... .+.|.+. ...|.|+.+||+
T Consensus         4 l~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~~LV~   82 (109)
T 3tkz_A            4 MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNT-GDYYDLYGGEKFATLAELVQ   82 (109)
T ss_dssp             ---CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEEC-SSCEESSSSCCBSSHHHHHH
T ss_pred             cccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCEEEEEEEEeC-CCEEEecCCcccCCHHHHHH
Confidence            3567899999999999999987 589999999999999999999999999999999874 4556554 445999999999


Q ss_pred             hhhcccc
Q psy10189        133 YHRTASV  139 (376)
Q Consensus       133 ~~~~~~~  139 (376)
                      ||+.++.
T Consensus        83 ~y~~~~~   89 (109)
T 3tkz_A           83 YYMEHHG   89 (109)
T ss_dssp             HHHHSTT
T ss_pred             HHHhCcC
Confidence            9998764

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.62  E-value=2.3e-16  Score=107.97  Aligned_cols=56  Identities=23%  Similarity=0.494  Sum_probs=51.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      .|+|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.|+||+|||+....
T Consensus         3 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~gWw~g~~~g~~G~fP~~yv~~~~~   58 (65)
T 2fei_A            3 QCKVLFEYIPQNEDELELKVGDIIDINEE-VEEGWWSGTLNNKLGLFPSNFVKELEL   58 (65)
T ss_dssp             EEECSSCCCCCSTTBCCCCTTCEEECCCC-SSSSEEEEESSSCEEEEETTTSCBCCC
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEe-cCCCEEEEEECCcEEEecHHHEEEcCC
Confidence            79999999999999999999999999987 667899999999999999999986543

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.9e-16  Score=102.94  Aligned_cols=53  Identities=26%  Similarity=0.560  Sum_probs=49.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve   54 (376)
                      +++|+|||+++.++||+|++||+|.|+++.++++||.++.+|+.||||+|||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            58999999999999999999999999997544789999999999999999985

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.62  E-value=4.7e-16  Score=104.25  Aligned_cols=55  Identities=38%  Similarity=0.648  Sum_probs=50.6

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      +.++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~   56 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDS-SNPSWWTGRLHNKLGLFPANYVAPM   56 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEE-CCCCEEEEEECCeEEEeeHHHeEEc
Confidence            368999999999999999999999999997 6678999999999999999999854

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.62  E-value=4e-16  Score=104.68  Aligned_cols=55  Identities=27%  Similarity=0.517  Sum_probs=50.9

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      |+++|+|||.++.++||+|++||+|.|+++ .+++||.+..+|+.||||+|||+..
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEX-CSDGWWRGSYNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEE-CTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEc-CCCCEEEEEECCcEEEEehHHEEEC
Confidence            589999999999999999999999999997 5678999999999999999999853

>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}

Probab=99.61  E-value=1.8e-15  Score=117.79  Aligned_cols=96  Identities=34%  Similarity=0.630  Sum_probs=81.1

Q ss_pred             ccccccccccCCHHHHHHHhcCC-CCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEecee-ecchhhhHh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVK-FNSLNELVE  132 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~-~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~-f~sl~~li~  132 (376)
                      +...+||||.|+|++|+.+|... .+|+||||.|. .++.|+||+..++.++|++|... .+.|.+.... |.|+.+||+
T Consensus        16 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~~LV~   93 (124)
T 2eob_A           16 HESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRD-GRHFVLGTSAYFESLVELVS   93 (124)
T ss_dssp             TTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCT-TSSCEEEEEEETTEEEEEEEEES-SSCEESSSSCCBSSHHHHHH
T ss_pred             cCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecC-CCCCEEEEEEeCCeEEEEEEEEC-CCEEEECCCCcCCCHHHHHH
Confidence            45689999999999999999885 69999999999 89999999999999999999874 5677777666 999999999


Q ss_pred             hhhcccccccccccccCCCchh
Q psy10189        133 YHRTASVSRSQDVKLRDMVPEE  154 (376)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~  154 (376)
                      ||+.+++..  ...|..|.+..
T Consensus        94 ~y~~~~~~~--~~~L~~P~~~~  113 (124)
T 2eob_A           94 YYEKHALYR--KMRLRYPVTPE  113 (124)
T ss_dssp             HHTTSCSSS--SCCSCEECCHH
T ss_pred             HHhhCCCCC--CcCCCCcCCcH
Confidence            999987653  34555555443

>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}

Probab=99.61  E-value=5.2e-16  Score=125.01  Aligned_cols=88  Identities=27%  Similarity=0.450  Sum_probs=78.6

Q ss_pred             ccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--------e
Q psy10189         51 NYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--------V  122 (376)
Q Consensus        51 nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~--------~  122 (376)
                      +...+...+||||.|+|++|+.+|...++|+||||+|.+.++.|+||+..++.++|++|.. .+|.|++..        .
T Consensus        27 ~~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~-~~g~f~l~~~~~~~~~~~  105 (152)
T 2hmh_A           27 AVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQX-EGGSFSLQSDPRSTQPVP  105 (152)
T ss_dssp             HHHHHHHTSSEETTCCHHHHHHHHHTSCTTEEEEEECCSTTCSEEEEEEETTEEEEEEEEC-GGGCBEECBCTTCSSCCC
T ss_pred             hhhhhccCCCcCCCCCHHHHHHHhcCCCCCcEEEEeCCCCCCcEEEEEEcCCceEEEEEEe-cCCEEEEecccccccccC
Confidence            3334567899999999999999999999999999999999999999999999999999997 677888876        4


Q ss_pred             eecchhhhHhhhhcccc
Q psy10189        123 KFNSLNELVEYHRTASV  139 (376)
Q Consensus       123 ~f~sl~~li~~~~~~~~  139 (376)
                      .|.||.+||+||+..+.
T Consensus       106 ~F~SL~eLV~~Y~~~~~  122 (152)
T 2hmh_A          106 RFDXVLKLVHHYMPPQA  122 (152)
T ss_dssp             CBSSHHHHHHHTCCCCC
T ss_pred             ccCCHHHHHHHHhhCcc
Confidence            59999999999998763

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.61  E-value=5.6e-16  Score=107.08  Aligned_cols=56  Identities=29%  Similarity=0.593  Sum_probs=51.3

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +.++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   59 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQ-IDENWYEGMIHGESGFFPINYVEVIV   59 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE-SSSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEe-cCCCEEEEEECCcEEEeeHHHEEEcC
Confidence            368999999999999999999999999997 56789999999999999999998643

>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A

Probab=99.61  E-value=2.7e-15  Score=115.95  Aligned_cols=86  Identities=30%  Similarity=0.622  Sum_probs=73.2

Q ss_pred             ccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEc-CCCcEEEe----ceeecch
Q psy10189         55 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD-SSGKFFLW----VVKFNSL  127 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~-~~~~~~~~----~~~f~sl  127 (376)
                      ....+||||.|+|++|+.+|..  .++|+||||.|.+.++.|+||+..++.++|++|... .+|.+++.    ...|.|+
T Consensus        11 ~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl   90 (117)
T 3pqz_A           11 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDL   90 (117)
T ss_dssp             GGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCTTCCEEESSTTSSCBSSH
T ss_pred             cccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCCCCEEEEECCCCcccCCH
Confidence            4567899999999999999976  579999999999999999999999999999999975 56654333    3469999


Q ss_pred             hhhHhhhhccccc
Q psy10189        128 NELVEYHRTASVS  140 (376)
Q Consensus       128 ~~li~~~~~~~~~  140 (376)
                      .+||+||+.++..
T Consensus        91 ~~LV~~y~~~~~~  103 (117)
T 3pqz_A           91 LQLVEFHQLNRGI  103 (117)
T ss_dssp             HHHHHHHHHCCTT
T ss_pred             HHHHHHHhhCCCC
Confidence            9999999987654

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.61  E-value=6.2e-16  Score=105.91  Aligned_cols=56  Identities=38%  Similarity=0.743  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~~   58 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++ .+|++||||+|||+....
T Consensus         5 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            5 YVRALFDFNGNDEEDLPFKKGDILRIRDK-PEEQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             EEEECCcCCCCCCCccCCcCCCEEEEEEe-cCCCeEEEEECCCCEEEEChHHEeecCC
Confidence            68999999999999999999999999997 557899999 889999999999987654

>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}

Probab=99.61  E-value=3.2e-16  Score=120.86  Aligned_cols=86  Identities=24%  Similarity=0.384  Sum_probs=76.0

Q ss_pred             ccccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEe----CCeeEEEEEEEcCCCcEEEece-ee--cc
Q psy10189         55 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKC----SDGVQHFKVLRDSSGKFFLWVV-KF--NS  126 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~----~~~v~h~~I~~~~~~~~~~~~~-~f--~s  126 (376)
                      +...+||||.|+|++|+.+|.. .++|+||||+|++.++.|+||+..    ++.|+|++|.. .+|.|++... .|  +|
T Consensus        18 ~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~-~~g~~~i~~~~~F~~~s   96 (118)
T 2el8_A           18 ALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKR-EGPKYVIDVEQPFSCTS   96 (118)
T ss_dssp             CSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCC-BTTBCCBSSSSCCCCSS
T ss_pred             ccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEE-cCCEEEEeCCCeECCCC
Confidence            3567899999999999999964 689999999999999999999999    88999999987 6778888764 59  99


Q ss_pred             hhhhHhhhhcccccc
Q psy10189        127 LNELVEYHRTASVSR  141 (376)
Q Consensus       127 l~~li~~~~~~~~~~  141 (376)
                      +.+||+||+.++.+.
T Consensus        97 L~eLV~~y~~~~~gl  111 (118)
T 2el8_A           97 LDAVVNYFVSHTKKA  111 (118)
T ss_dssp             HHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHhhCCCCC
Confidence            999999999887653

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.61  E-value=4.9e-16  Score=114.15  Aligned_cols=72  Identities=33%  Similarity=0.504  Sum_probs=48.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccccc---cccccccCCHHHHHHHhc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN---HDWYYGRITRADAERLLS   75 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~---~~w~~g~isr~~ae~~l~   75 (376)
                      .++|+|||.++.++||+|++||+|.|+++ + ++||.++.  +|+.||||+|||+...   ..+|++.++|.+|+.+|.
T Consensus         5 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~r~~ae~lL~   81 (90)
T 3reb_B            5 IVVALYDYVSWSPDDLSFQKGDQMVVLEE-S-GEWWKARSLATRKEGYIPSNYVARVDSGGGTSGGGRHRRRQAERMSQ   81 (90)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-S-SSEEEEEETTTCCEEEEEGGGEEEECC--------------------
T ss_pred             EEEECCccCcCCcCcCCCCCCCEEEEEEe-C-CCEEEEEECCCCCEEEEehhheEECCCCCCcccccCcCHHHHHHHHh
Confidence            58999999999999999999999999996 3 57999996  8999999999998532   335999999999999884

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.61  E-value=3.3e-16  Score=105.73  Aligned_cols=53  Identities=34%  Similarity=0.652  Sum_probs=49.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||++
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            8 FAIAKFDYVGRSARELSFKKGASLLLYHR-ASEDWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE-EETTEEEEEETTEEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEe-cCCCEEEEEECCeEEEEeHhhEEC
Confidence            68999999999999999999999999997 456899999999999999999973

>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A

Probab=99.61  E-value=1.6e-15  Score=119.20  Aligned_cols=86  Identities=34%  Similarity=0.498  Sum_probs=75.5

Q ss_pred             cccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeC---------------CeeEEEEEEEcCCCcEE
Q psy10189         54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS---------------DGVQHFKVLRDSSGKFF  118 (376)
Q Consensus        54 e~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~---------------~~v~h~~I~~~~~~~~~  118 (376)
                      .....+||||.|+|++|+.+|...++|+||||+|++.++.|+||+...               +.|+|++|.....| |+
T Consensus        16 ~~~~~~Wyhg~isR~eAe~lL~~~~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g-~~   94 (131)
T 2kno_A           16 SDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKG-VK   94 (131)
T ss_dssp             CCCHHHHBCTTCCHHHHHHHHTTSCTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSC-CC
T ss_pred             ccccCCceecCCCHHHHHHHhcCCCCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCC-CE
Confidence            355678999999999999999988999999999999999999999986               37999999987777 66


Q ss_pred             E----eceeecchhhhHhhhhccccc
Q psy10189        119 L----WVVKFNSLNELVEYHRTASVS  140 (376)
Q Consensus       119 ~----~~~~f~sl~~li~~~~~~~~~  140 (376)
                      +    ....|.||.+||+||+..+..
T Consensus        95 l~g~~~~~~F~SL~eLV~~y~~~~~~  120 (131)
T 2kno_A           95 IKGCPSEPYFGSLSALVSQHSISPIS  120 (131)
T ss_dssp             EETCSSCCCCCSHHHHHHTTTTCCSS
T ss_pred             EecCCCCCccCCHHHHHHHHhhCCCC
Confidence            6    344599999999999988765

>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}

Probab=99.61  E-value=1.1e-15  Score=121.79  Aligned_cols=87  Identities=28%  Similarity=0.384  Sum_probs=75.6

Q ss_pred             ccccccccccCCHHHHHHHhcC-CCCccEEEeecCC--CCCceEEEEEeCCeeEEEEEEEcCCCc-EEEe-----ceeec
Q psy10189         55 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSES--SPGDFSLSVKCSDGVQHFKVLRDSSGK-FFLW-----VVKFN  125 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~--~~~~~~Ls~~~~~~v~h~~I~~~~~~~-~~~~-----~~~f~  125 (376)
                      +...+||||.|+|++|+++|.. ..+|+||||+|.+  .++.|+||+..++.++|++|....+|. |.+.     ...|.
T Consensus        20 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~l~~~~~~~~~F~   99 (141)
T 2eo6_A           20 LLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFG   99 (141)
T ss_dssp             TTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEETTTTEECSSSCCTTCCCBS
T ss_pred             cCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeCCCCEEEEccccCCCCccC
Confidence            5668899999999999999975 6899999999987  789999999999999999998766777 5555     24599


Q ss_pred             chhhhHhhhhcccccc
Q psy10189        126 SLNELVEYHRTASVSR  141 (376)
Q Consensus       126 sl~~li~~~~~~~~~~  141 (376)
                      +|.+||+||+.++...
T Consensus       100 sl~eLV~~y~~~~~~l  115 (141)
T 2eo6_A          100 SVVEIVNSHQHNPLVL  115 (141)
T ss_dssp             SHHHHHHHHHHSCCCC
T ss_pred             CHHHHHHHHhhCCccc
Confidence            9999999999887654

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.60  E-value=6.2e-16  Score=105.14  Aligned_cols=54  Identities=24%  Similarity=0.550  Sum_probs=50.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+..
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1k4u_S            7 QVEALFSYEATQPEDLEFQEGDIILVLSK-VNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEECCSCBCCCSSSBCCBCSSCEEEEEEE-SSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             EEEECCCCCcCCCCCccCCCCCEEEEEEe-CCCCEEEEEECCcEEEEeHHHEEEC
Confidence            58999999999999999999999999997 5678999999999999999999854

>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}

Probab=99.60  E-value=1.8e-15  Score=118.01  Aligned_cols=85  Identities=31%  Similarity=0.629  Sum_probs=75.4

Q ss_pred             ccccccccccCCHHHHHHHhcCC-CCccEEEeecCCCCCceEEEEEe------CCeeEEEEEEEcCCCcEEEece-eecc
Q psy10189         55 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKC------SDGVQHFKVLRDSSGKFFLWVV-KFNS  126 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~-~~G~flvR~s~~~~~~~~Ls~~~------~~~v~h~~I~~~~~~~~~~~~~-~f~s  126 (376)
                      +...+||||.|+|++|+.+|... .+|+||||.| +.++.|+||+..      ++.++|++|....+|.|++.+. .|.|
T Consensus         8 l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~S-s~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   86 (125)
T 2ge9_A            8 IEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKHLFST   86 (125)
T ss_dssp             SCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEEC-SSSCCEEEEEEESSSSSTTCEEEEEECEEETTTEEESSTTSCBSS
T ss_pred             cccCCccccCCCHHHHHHHHhhcCCCceEEEEec-CCCCCEEEEEEeccccCCCCeEEEEEEEEcCCCCEEECCCCcCCC
Confidence            45688999999999999999874 9999999999 679999999997      4689999999888888888764 5999


Q ss_pred             hhhhHhhhhccccc
Q psy10189        127 LNELVEYHRTASVS  140 (376)
Q Consensus       127 l~~li~~~~~~~~~  140 (376)
                      |.+||+||+..+..
T Consensus        87 l~eLV~~y~~~~~~  100 (125)
T 2ge9_A           87 IPELINYHQHNSAG  100 (125)
T ss_dssp             HHHHHHHHHCCCTT
T ss_pred             HHHHHHHhhhCCCC
Confidence            99999999987743

>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.5e-15  Score=118.62  Aligned_cols=85  Identities=32%  Similarity=0.645  Sum_probs=75.0

Q ss_pred             ccccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEe------CCeeEEEEEEEcCCCcEEEece-eecc
Q psy10189         55 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKC------SDGVQHFKVLRDSSGKFFLWVV-KFNS  126 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~------~~~v~h~~I~~~~~~~~~~~~~-~f~s  126 (376)
                      +...+||||.|+|++|+.+|.. ..+|+||||.| +.++.|+||+..      ++.++|++|....+|.|++... .|.|
T Consensus        13 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s   91 (125)
T 2dm0_A           13 LEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDS-RHLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQS   91 (125)
T ss_dssp             CTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEE-TTEEEEEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSS
T ss_pred             cccCCcccCCCCHHHHHHHHhhcCCCCEEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCC
Confidence            4567899999999999999987 49999999999 678999999998      4689999999888888888754 5999


Q ss_pred             hhhhHhhhhccccc
Q psy10189        127 LNELVEYHRTASVS  140 (376)
Q Consensus       127 l~~li~~~~~~~~~  140 (376)
                      |.+||+||+..+..
T Consensus        92 l~eLV~~y~~~~~~  105 (125)
T 2dm0_A           92 IPELIWYHQHNAAG  105 (125)
T ss_dssp             HHHHHHHHTTCCCS
T ss_pred             HHHHHHHhhhCCCC
Confidence            99999999987644

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.60  E-value=6.4e-16  Score=104.38  Aligned_cols=55  Identities=40%  Similarity=0.724  Sum_probs=49.8

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC-Cccceeccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEM   55 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~-g~~G~vP~nyve~   55 (376)
                      ++++|+|||+++.++||+|++||+|.|+++.++++||.++.+ |+.||||+|||+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~   59 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA   59 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEE
Confidence            479999999999999999999999999987555689999976 9999999999974

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.60  E-value=9.3e-16  Score=102.81  Aligned_cols=54  Identities=35%  Similarity=0.721  Sum_probs=50.2

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      +.++|+|+|+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+.
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~   56 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINK-DDPNWWEGQLNNRRGIFPSNYVCP   56 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEe-cCCCEEEEEECCcEEEechHHeEE
Confidence            368999999999999999999999999997 667899999999999999999975

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.59  E-value=1e-15  Score=106.07  Aligned_cols=56  Identities=23%  Similarity=0.664  Sum_probs=51.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++. .+++||.++.+|++||||+|||+...
T Consensus         4 ~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~   60 (69)
T 2ydl_A            4 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP   60 (69)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECC
Confidence            589999999999999999999999999973 36789999999999999999998654

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.59  E-value=8e-16  Score=103.06  Aligned_cols=54  Identities=33%  Similarity=0.687  Sum_probs=49.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC--Cccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~vP~nyve~~   56 (376)
                      +++|+|||+++.++||+|++||+|.|+++ .+++||.++..  |+.||||+|||++.
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEF-VDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEe-cCCCcEEEEECCCCCEEEechHHeEEC
Confidence            58999999999999999999999999997 56789999966  99999999999853

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.3e-15  Score=105.64  Aligned_cols=56  Identities=32%  Similarity=0.520  Sum_probs=51.4

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      ++++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2p_A            8 EEFVAIADYAATDETQLSFLRGEKILILRQ-TTADWWWGERAGCCGYIPANHVGKHS   63 (68)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEEC-CSSSEEEEECTTCCEEEESSSEECCC
T ss_pred             CEEEECceECCCCcCCcCCCCCCEEEEEEc-CCCCEEEEEECCeEEEEehHHeEECC
Confidence            479999999999999999999999999997 56789999999999999999998654

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.59  E-value=1e-15  Score=103.27  Aligned_cols=53  Identities=34%  Similarity=0.710  Sum_probs=49.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+.
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~   59 (60)
T 2xmf_A            7 QCKALYAYDAQDTDELSFNANDIIDIIKE-DPSGWWTGRLRGKQGLFPNNYVTK   59 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE-CTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECccCCcCCcCCcCCCCCCEEEEEEe-cCCCEEEEEECCEEEEEcHHHEEE
Confidence            68999999999999999999999999997 567899999999999999999974

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.3e-15  Score=105.55  Aligned_cols=56  Identities=16%  Similarity=0.535  Sum_probs=51.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+....
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl4_A            9 TYVALYKFVPQENEDLEMRPGDIITLLED-SNEDWWKGKIQDRIGFFPANFVQRLSG   64 (68)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEEEC-CCSSEEEEECSSCEEEEETTTEEECCC
T ss_pred             EEEEeeeECCCCcCCcCCCCCCEEEEEEe-CCCCEEEEEECCcEEEEehHHeEECCC
Confidence            68999999999999999999999999996 567899999999999999999986543

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.59  E-value=7.6e-16  Score=107.14  Aligned_cols=57  Identities=32%  Similarity=0.563  Sum_probs=51.5

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccC--CccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMED--DMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~--~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      |.++|+|||+++.++||+|++||+|.|+++..  +++||.++.+|++||||+|||+...
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV   62 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECC
Confidence            46899999999999999999999999999742  6789999999999999999998643

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.59  E-value=1e-15  Score=105.71  Aligned_cols=55  Identities=15%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             EEEEeecCCCC--CCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNAT--AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~--~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||.++  .++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         8 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~-~~~gWw~g~~~g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A            8 YARVIQKRVPNAYDKTALALEVGELVKVTKI-NVSGQWEGECNGKRGHFPFTHVRLLD   64 (67)
T ss_dssp             BEEECCCBCCCTTCSSBCCBCSSEEEEEEEE-CTTSEEEEEETTEEEEEEGGGBCCBC
T ss_pred             EEEEeEEECCCCCCCCccccCCCCEEEEEEe-cCCCEEEEEECCCEEEEehHhEEEcC
Confidence            58999999999  889999999999999997 56789999999999999999998654

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.59  E-value=1.2e-15  Score=102.16  Aligned_cols=53  Identities=21%  Similarity=0.561  Sum_probs=49.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+.
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~   56 (58)
T 1zx6_A            4 YVEALYQFDPQQDGDLGLKPGDKVQLLEK-LSPEWYKGSCNGRTGIFPANYVKP   56 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEE-CSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECceECCCCCCCccCCCCCEEEEEEe-cCCCEEEEEECCcEEEeeHHHEEE
Confidence            58999999999999999999999999997 567899999999999999999974

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.59  E-value=1.2e-15  Score=102.65  Aligned_cols=53  Identities=36%  Similarity=0.716  Sum_probs=49.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+.
T Consensus         6 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~   58 (59)
T 2g6f_X            6 VVRAKFNFQQTNEDELSFSKGDVIHVTRV-EEGGWWEGTHNGRTGWFPSNYVRE   58 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE-CTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECceeCCCCcCCcCCCCCCEEEEEEe-cCCCEEEEEECCcEEEEeHHHEEE
Confidence            68999999999999999999999999997 567899999999999999999974

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.59  E-value=9.9e-16  Score=109.70  Aligned_cols=56  Identities=27%  Similarity=0.560  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||++++++||+|++||+|.|+++.++++||.++.+|++||||+|||+...
T Consensus        12 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   67 (80)
T 2i0n_A           12 YARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILL   67 (80)
T ss_dssp             EEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEES
T ss_pred             EEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECC
Confidence            68999999999999999999999999998555449999999999999999998654

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.58  E-value=1.1e-15  Score=102.39  Aligned_cols=53  Identities=32%  Similarity=0.712  Sum_probs=49.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+.
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~   57 (58)
T 2drm_A            5 QVKALYDYDAQTGDELTFKEGDTIIVHQK-DPAGWWEGELNGKRGWVPANYVQD   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCCEEEEEECCcEEEEeHHHEEE
Confidence            68999999999999999999999999997 567899999999999999999974

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.58  E-value=1.4e-15  Score=102.67  Aligned_cols=54  Identities=35%  Similarity=0.812  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC-CccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~-~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++.+ +++||.++.+|+.||||+|||+.
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (60)
T 1oot_A            5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL   59 (60)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEE
Confidence            6899999999999999999999999999742 67899999999999999999974

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.58  E-value=1.6e-15  Score=103.89  Aligned_cols=56  Identities=34%  Similarity=0.687  Sum_probs=51.1

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +.++|+|+|+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRV-EEGGWWEGTHNGRTGWFPSNYVREIK   62 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEe-cCCCEEEEEECCCEEEEehHHeEEcC
Confidence            368999999999999999999999999997 56789999999999999999998653

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.58  E-value=1.9e-15  Score=106.01  Aligned_cols=55  Identities=22%  Similarity=0.408  Sum_probs=50.4

Q ss_pred             EEEEeecCCCC--CCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNAT--AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~--~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||++.  .++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus        11 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~-~~~gWw~g~~~g~~G~fP~~yv~~~~   67 (73)
T 2ebp_A           11 RARVHTDFTPSPYDTDSLKLKKGDIIDIISK-PPMGTWMGLLNNKVGTFKFIYVDVLS   67 (73)
T ss_dssp             EEEECSCBCCCTTCCSBCCBCSSCEEEEEEC-CSSSCEEEECSSCEEEECSTTEEECC
T ss_pred             EEEEeeccCCCCCCCCccCCCCCCEEEEEEe-CCCCeEEEEECCCEEEEeHHHEEECC
Confidence            58999999975  999999999999999997 67789999999999999999998654

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.58  E-value=1.3e-15  Score=103.44  Aligned_cols=53  Identities=32%  Similarity=0.684  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+.
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            7 RVRALYDFEAVEDNELTFKHGELITVLDD-SDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEe-CCCCEEEEEECCCEEEechhHEEE
Confidence            68999999999999999999999999997 667999999999999999999985

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=9.9e-16  Score=107.41  Aligned_cols=56  Identities=36%  Similarity=0.692  Sum_probs=51.1

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +.++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||++..
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (72)
T 2dl8_A           10 IEAIAKFDYVGRTARELSFKKGASLLLYQR-ASDDWWEGRHNGIDGLIPHQYIVVQD   65 (72)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEEE-EETTEEEEEETTEEEEECSSSEEECC
T ss_pred             EEEEECccCCcCCCCEeccCCCCEEEEEee-cCCCEEEEEECCEEEEEchHHeEEcC
Confidence            369999999999999999999999999997 45689999999999999999998654

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.58  E-value=6.2e-16  Score=108.43  Aligned_cols=57  Identities=33%  Similarity=0.566  Sum_probs=51.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      .++|+|||+++.++||+|++||+|.|+++..+++||.++.+|+.||||+|||+....
T Consensus        12 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   68 (72)
T 1ugv_A           12 KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             EEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCC
Confidence            589999999999999999999999999855677899999999999999999986543

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.58  E-value=1.1e-15  Score=105.26  Aligned_cols=54  Identities=35%  Similarity=0.677  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCCCC-CccccCCCEEEEEeccC----Cccceeecc-CCccceeccccccc
Q psy10189          2 EAIAKHDFNATAED-ELSFRKSQVLKILNMED----DMNWYRAEL-DGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~-eLsf~~Gd~i~v~~~~~----~~~W~~~~~-~g~~G~vP~nyve~   55 (376)
                      .++|+|+|+|++++ ||+|++||+|.|+++.+    +++||.++. +|++||||+|||++
T Consensus         9 ~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~   68 (69)
T 1nm7_A            9 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI   68 (69)
T ss_dssp             CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEE
T ss_pred             EEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEE
Confidence            58999999999999 99999999999999744    358999997 89999999999974

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.5e-15  Score=105.18  Aligned_cols=55  Identities=24%  Similarity=0.497  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.+..+|+.||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2dmo_A            9 AHRVLFGFVPETKEELQVMPGNIVFVLKK-GNDNWATVMFNGQKGLVPCNYLEPVS   63 (68)
T ss_dssp             EEEECSSCCCCSSSSCCCCTTCEEEECEE-CSSSCEEEEETTEEEEECSTTEEECC
T ss_pred             EEEECcCCCcCCcCCCCCCCCCEEEEEEe-CCCCEEEEEeCCCEEEeehHHeEECC
Confidence            58999999999999999999999999997 55789999999999999999998654

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.58  E-value=1.8e-15  Score=106.43  Aligned_cols=60  Identities=23%  Similarity=0.645  Sum_probs=54.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeeccCCccceeccccccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEMKNHDWY   61 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~~~g~~G~vP~nyve~~~~~w~   61 (376)
                      .++|+|+|+++.++||+|++||+|.|+++. .+++||.++.+|+.||||+|||+.....|+
T Consensus        11 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~   71 (73)
T 2k9g_A           11 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFE   71 (73)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCSSCC
T ss_pred             EEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCcccc
Confidence            589999999999999999999999999873 367899999999999999999998776654

>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1

Probab=99.58  E-value=2.9e-15  Score=124.15  Aligned_cols=97  Identities=23%  Similarity=0.271  Sum_probs=81.3

Q ss_pred             Cccceeccccc----cccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEE
Q psy10189         43 GKEGLIPSNYI----EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF  118 (376)
Q Consensus        43 g~~G~vP~nyv----e~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~  118 (376)
                      ++.++++ +|+    .+...+||||.|+|.+|+.+|.+.++|+||||+|++....|+||+..++.++|++|... +|.|.
T Consensus        16 ~~~~~~~-~~v~~~~~l~~~~WYhG~isR~eAE~lL~~~~dGtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~-~g~f~   93 (187)
T 2izv_A           16 ENLYFQS-MLVPDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQW-NHNFS   93 (187)
T ss_dssp             -CCSCEE-EECTTHHHHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEE-TTEEE
T ss_pred             Ccccccc-ccccchhhcccCCccccCCCHHHHHHHhcCCCCCcEEEEECCCCCceEEEEEeeCCeEEEEEEEEC-CCEEE
Confidence            3444543 344    35678999999999999999998899999999999877889999999999999999986 67788


Q ss_pred             Eece-----eecchhhhHhhhhcccccc
Q psy10189        119 LWVV-----KFNSLNELVEYHRTASVSR  141 (376)
Q Consensus       119 ~~~~-----~f~sl~~li~~~~~~~~~~  141 (376)
                      +...     .|+|+.+||+||+.++...
T Consensus        94 l~~~~~~~~~F~SL~eLV~hY~~~~~~~  121 (187)
T 2izv_A           94 FDAHDPCVFHSPDITGLLEHYKDPSACM  121 (187)
T ss_dssp             SCTTCTTSCCBSSHHHHHHHTCCGGGCC
T ss_pred             EeccCCCccccCCHHHHHHHHHhccccc
Confidence            8753     6999999999999887654

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.2e-15  Score=104.38  Aligned_cols=56  Identities=34%  Similarity=0.646  Sum_probs=51.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+....
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            9 VFRALYTFEPRTPDELYFEEGDIIYITDM-SDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             EEEESSCCCCCSTTBCCCCSSCEEEEEEC-SCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             EEEECceECCCCCCcccCCCCCEEEEEEc-CCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            58999999999999999999999999997 667899999999999999999986543

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.57  E-value=1.9e-15  Score=103.48  Aligned_cols=55  Identities=31%  Similarity=0.708  Sum_probs=50.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.|+++. .+++||.++.+|++||||+|||+..
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            8 YCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            589999999999999999999999999873 2678999999999999999999853

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.9e-15  Score=106.77  Aligned_cols=56  Identities=27%  Similarity=0.539  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCC-------CCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATA-------EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~-------~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.       ++||+|++||+|.|+.+..+++||.++.+|++||||+|||+...
T Consensus         9 ~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   71 (75)
T 2ege_A            9 IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMS   71 (75)
T ss_dssp             EEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECC
T ss_pred             EEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEcc
Confidence            589999999999       99999999999999974467789999999999999999998643

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.57  E-value=2.5e-15  Score=104.18  Aligned_cols=55  Identities=27%  Similarity=0.578  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2djq_A            9 RAKALCNYRGKNPGDLKFNKGDVILLRRQ-LDENWYQGEINGVSGIFPASSVEVIS   63 (68)
T ss_dssp             EEEECSCCCSCCTTCCCCCTTCEEEEEEC-CCSSEEEEEETTEEEEEESSSEETTC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEEEe-cCCCEEEEEECCcEEEeehHHEEEcC
Confidence            68999999999999999999999999987 56789999999999999999998654

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.57  E-value=2.1e-15  Score=101.06  Aligned_cols=54  Identities=28%  Similarity=0.684  Sum_probs=49.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+..
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            4 YVQALFDFDPQEDGELGFRRGDFIHVMDN-SDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECceECCCCcCCcCCCCCCEEEEEEc-CCCCEEEEEECCcEEEEchHHeEEC
Confidence            58999999999999999999999999997 5678999999999999999999753

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.57  E-value=2e-15  Score=101.11  Aligned_cols=53  Identities=36%  Similarity=0.676  Sum_probs=49.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+.
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            5 VFRALYTFEPRTPDELYFEEGDIIYITDM-SDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEe-CCCCEEEEEECCCEEEEehHHEEe
Confidence            58999999999999999999999999997 667899999999999999999973

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.57  E-value=1.7e-15  Score=104.13  Aligned_cols=54  Identities=37%  Similarity=0.757  Sum_probs=50.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+..
T Consensus        11 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           11 TAIALYDYQAAGDDEISFDPDDIITNIEM-IDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             CEEECSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEEeeECCCCcCEeeEecCCEEEEEEe-cCCCEEEEEECCcEEEEehHHeEEC
Confidence            58999999999999999999999999997 5678999999999999999999853

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.7e-15  Score=107.34  Aligned_cols=56  Identities=30%  Similarity=0.646  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCC-------CCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATA-------EDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~-------~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|+++.       ++||+|++||+|.|+++.++++||.++.+|++||||+|||+...
T Consensus         9 ~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   71 (76)
T 2csi_A            9 RMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS   71 (76)
T ss_dssp             EEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             EEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECC
Confidence            689999999998       99999999999999997555689999999999999999998654

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.57  E-value=2.1e-15  Score=104.55  Aligned_cols=55  Identities=38%  Similarity=0.680  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2dl3_A            9 PARAKFDFKAQTLKELPLQKGDIVYIYKQ-IDQNWYEGEHHGRVGIFPRTYIELLS   63 (68)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-CSTTEEEEECSSCEEEEETTTEEECC
T ss_pred             EEEECccCCCCCcCCccCCCCCEEEEeEe-cCCCEEEEEECCCEEEEchHHEEECC
Confidence            68999999999999999999999999996 56789999999999999999998654

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.57  E-value=2.5e-15  Score=101.50  Aligned_cols=54  Identities=33%  Similarity=0.696  Sum_probs=49.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++..+++||.++.  +|+.||||+|||+.
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   59 (60)
T 2v1q_A            4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP   59 (60)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEE
Confidence            6899999999999999999999999999644678999997  89999999999974

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.57  E-value=1.9e-15  Score=104.38  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=50.6

Q ss_pred             EEEEeecCCCC--CCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNAT--AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~--~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|+|.++  .++||+|++||+|.|+++ .+++||.+..+|+.||||+|||+...
T Consensus         3 ~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~fP~~yv~~~~   59 (67)
T 2bzy_A            3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRM-NINGQWEGEVNGRKGLFPFTHVKIFD   59 (67)
T ss_dssp             EEEECSCBCSEEECTTBCCBCTTCEEEEEEE-CSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEeeeECCCCCCCCccccCCCCEEEEEEe-cCCCeEEEEeCCcEEEEehHHeEECC
Confidence            58999999998  999999999999999997 56789999999999999999998654

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.57  E-value=2.5e-15  Score=100.24  Aligned_cols=53  Identities=38%  Similarity=0.753  Sum_probs=48.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++ .+|+.||||+|||+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~   56 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDK-PEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEe-cCCCcEEEEeCCCCEEEEeHHHEEE
Confidence            58999999999999999999999999997 557899998 889999999999974

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.57  E-value=2.5e-15  Score=103.08  Aligned_cols=54  Identities=22%  Similarity=0.343  Sum_probs=49.5

Q ss_pred             EEEEeecCCC-CCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccccc
Q psy10189          2 EAIAKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~-~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~   56 (376)
                      +++|+|+|++ +.++||+|++||+|.|+++ .+++||.++  .+|+.||||+|||+..
T Consensus         7 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~   63 (65)
T 2j05_A            7 RVRAILPYTKVPDTDEISFLKGDMFIVHNE-LEDGWMWVTNLRTDEQGLIVEDLVEEV   63 (65)
T ss_dssp             EEEESSCBCCCTTSSBCCBCTTCEEEEEEE-CTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccccCCCCCCCcCcCCCCCEEEEeEe-cCCCEEEEEECCCCCEEEEEhHHeEEC
Confidence            6899999999 9999999999999999987 566899998  7899999999999854

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=1.7e-15  Score=105.56  Aligned_cols=53  Identities=32%  Similarity=0.685  Sum_probs=49.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+.
T Consensus        19 ~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~-~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           19 KVRAIYDFEAAEDNELTFKAGEIITVLDD-SDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE-EETTEEEEECSSCEEECTTCCEEE
T ss_pred             EEEECCccCCCCCCccCCCCCCEEEEEEe-cCCCEEEEEECCCEEEechhhCcc
Confidence            58999999999999999999999999997 556899999999999999999974

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.57  E-value=2.6e-15  Score=103.15  Aligned_cols=54  Identities=35%  Similarity=0.650  Sum_probs=48.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||+++.++||+|++||+|.|+++ + ++||.++ .+|++||||+|||+...
T Consensus         6 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~-~~Ww~~~~~~g~~G~~Psnyv~~~~   60 (67)
T 2b86_A            6 IVIAKWDYTAQQDQELDIKKNERLWLLDD-S-KTWWRVRNAANRTGYVPSNYVERKL   60 (67)
T ss_dssp             EEEESSCBCCSSTTSCCBCTTCEEEEEEC-S-SSSCEEECTTSCEEECCCCSEEEC-
T ss_pred             EEEEeeeECCCCCCccccCCCCEEEEEec-C-CCeEEEEeCCCCEEEeChHHEeEcC
Confidence            48999999999999999999999999997 4 5899998 68999999999998654

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=2.9e-15  Score=105.41  Aligned_cols=56  Identities=34%  Similarity=0.605  Sum_probs=51.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc--CCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~--~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++.  .+++||.++.+|++||||+|||+...
T Consensus        10 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   67 (73)
T 2dl7_A           10 FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELS   67 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECC
T ss_pred             EEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECC
Confidence            589999999999999999999999999873  46789999999999999999998654

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.57  E-value=1.1e-15  Score=107.57  Aligned_cols=55  Identities=24%  Similarity=0.647  Sum_probs=50.5

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      |+|+|+|||++ +++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         1 m~a~alydy~~-~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   55 (73)
T 2kxd_A            1 MGAPPLPPYSA-GGREVTMKKGDILTLLNS-TNKDWWKVEVNDRQGFVPAAYVKKLD   55 (73)
T ss_dssp             CCCCCCCSSCC-CSCCCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEeeeeCC-CCCEeeEcCCCEEEEEEe-cCCCEEEEEECCCEEEEehHHeEEcC
Confidence            78999999998 899999999999999997 56789999999999999999998653

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.56  E-value=2.5e-15  Score=105.10  Aligned_cols=55  Identities=47%  Similarity=0.880  Sum_probs=49.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.|+++..+++||.++ .+|+.||||+|||+..
T Consensus        13 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   68 (71)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC-
T ss_pred             EEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEc
Confidence            589999999999999999999999999944667899999 7899999999999853

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.56  E-value=3.2e-15  Score=107.30  Aligned_cols=55  Identities=22%  Similarity=0.642  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||+++.++||+|++||+|.|+++ .+++||.+..+|+.||||+|||+...
T Consensus        19 ~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~-~~~gWw~g~~~g~~G~~P~~yv~~~~   73 (83)
T 1neg_A           19 LVLALYDYQEKSPREVTMKKGDILTLLNS-TNKDWWKVEVNDRQGFVPAAYVKKLA   73 (83)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEccccCCCCCCccccCCCCEEEEEEe-cCCCEEEEEECCeEEEEEHHHEEECC
Confidence            58999999999999999999999999997 56689999999999999999998654

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.56  E-value=2.8e-15  Score=111.85  Aligned_cols=57  Identities=40%  Similarity=0.939  Sum_probs=53.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.+|+.|+||++||+.+..
T Consensus        35 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   91 (98)
T 1udl_A           35 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD   91 (98)
T ss_dssp             EEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCC
T ss_pred             eEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            467899999999999999999999999999889999999999999999999998754

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.8e-15  Score=103.88  Aligned_cols=56  Identities=21%  Similarity=0.542  Sum_probs=50.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC-Cccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~-g~~G~vP~nyve~~~   57 (376)
                      +++|+|||+++.++||+|++||+|.|+++.++++||.++.. |++||||+|||+...
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2ct4_A            9 HCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTS   65 (70)
T ss_dssp             EEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECC
T ss_pred             EEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcC
Confidence            58999999999999999999999999997556679999965 999999999998654

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.56  E-value=2.4e-15  Score=103.89  Aligned_cols=56  Identities=23%  Similarity=0.363  Sum_probs=49.2

Q ss_pred             CEEEEeecCCCCCCCC-ccccCCCEEEEEeccCCccceeec--cCCccceecccccccc
Q psy10189          1 MEAIAKHDFNATAEDE-LSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         1 ~~~~al~~y~~~~~~e-Lsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~   56 (376)
                      ++|+|+|||.++.++| |+|++||+|.|+....+++||.++  .+|+.||||+|||+..
T Consensus         8 ~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             eEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            3699999999998777 999999999999654567899999  7899999999999853

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.4e-15  Score=107.78  Aligned_cols=55  Identities=36%  Similarity=0.738  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus        12 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (76)
T 2epd_A           12 EAVACFAYTGRTAQELSFRRGDVLRLHER-ASSDWWRGEHNGMRGLIPHKYITLPA   66 (76)
T ss_dssp             EEEESSCEECSSTTBCEECTTCEEEEEEE-EETTEEEEEETTEEEEEESSSEECCS
T ss_pred             EEEECcCCCCCCCCccCCCCCCEEEEEEe-CCCCEEEEEECCcEEEEehHHEEEcC
Confidence            68999999999999999999999999997 45789999999999999999998654

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.56  E-value=2.8e-15  Score=103.57  Aligned_cols=56  Identities=38%  Similarity=0.787  Sum_probs=50.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCC--ccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g--~~G~vP~nyve~~~~   58 (376)
                      +++|+|||+++.++||+|++||+|.|+++ .+++||.++..+  +.||||+|||+....
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            8 EAIAKFNFNGDTQVEMSFRKGERITLLRQ-VDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEE-CSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEe-cCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            69999999999999999999999999997 566899999654  999999999986543

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=3.2e-15  Score=106.49  Aligned_cols=57  Identities=23%  Similarity=0.543  Sum_probs=50.9

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC-Cccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-GKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~-g~~G~vP~nyve~~~   57 (376)
                      +.|+|+|||+++.++||+|++||+|.|+++.++++||.++.. |++||||+|||+...
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   71 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPT   71 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSC
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECC
Confidence            369999999999999999999999999997444789999965 999999999998654

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.56  E-value=3.3e-15  Score=104.20  Aligned_cols=56  Identities=23%  Similarity=0.675  Sum_probs=51.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++. .+++||.++.+|+.||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   65 (70)
T 2da9_A            9 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS   65 (70)
T ss_dssp             EEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECC
T ss_pred             EEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECC
Confidence            589999999999999999999999999873 36789999999999999999998654

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.6e-15  Score=105.11  Aligned_cols=56  Identities=30%  Similarity=0.583  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc--CCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~--~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++.  .+++||.++.+|+.||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (71)
T 2cre_A            9 LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILS   66 (71)
T ss_dssp             EEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECC
T ss_pred             EEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECC
Confidence            689999999999999999999999999973  26789999999999999999998654

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.56  E-value=3.7e-15  Score=101.73  Aligned_cols=55  Identities=29%  Similarity=0.515  Sum_probs=50.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||.++.++||+|++||+|.|+++..+.+||.++.+|++||||+|||+..
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~   61 (63)
T 3eg3_A            7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV   61 (63)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEES
T ss_pred             EEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEEC
Confidence            4899999999999999999999999999655667999999999999999999854

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.56  E-value=2.9e-15  Score=103.76  Aligned_cols=54  Identities=26%  Similarity=0.669  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCC-----ccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG-----KEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g-----~~G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.++     ++|+||+|||+..
T Consensus         9 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSV-EDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             EEEESSCBCCSCTTBCCBCTTCEEEEEEE-CSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             EEEECeeECcCCcCCCCCCCCCEEEEEEe-cCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            68999999999999999999999999987 667899999655     8999999999853

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.55  E-value=3.6e-15  Score=101.32  Aligned_cols=54  Identities=26%  Similarity=0.354  Sum_probs=49.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~   56 (376)
                      .++|+|+|+++.++||+|++||+|.|++. .+++||.++  .+|+.|+||+|||+..
T Consensus         5 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~~~g~~G~fP~~yv~~~   60 (62)
T 2fpe_A            5 THRAIFRFVPRHEDELELEVDDPLLVELQ-AEDYWYEAYNMRTGARGVFPAYYAIEV   60 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEE-CTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECccCCccCcCcCcCCCCCEEEEEEe-cCCCEEEEEECCCCCEEEechHHEEEC
Confidence            48999999999999999999999999986 667899998  7899999999999854

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2.6e-15  Score=105.56  Aligned_cols=56  Identities=34%  Similarity=0.669  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC-CccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~-~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++.. +++||.++.+|++||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (73)
T 2dm1_A            9 TAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG   65 (73)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECC
T ss_pred             EEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcC
Confidence            6899999999999999999999999998733 4589999999999999999998654

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=4e-15  Score=106.50  Aligned_cols=55  Identities=18%  Similarity=0.479  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|+|+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~-~~~gWw~g~~~g~~G~~P~~yv~~~~   64 (80)
T 2ekh_A           10 SYMTCSAYQKVQDSEISFPAGVEVQVLEK-QESGWWYVRFGELEGWAPSHYLVLDE   64 (80)
T ss_dssp             EEEECSCBCCSSTTSCCBCTTCEEEEEEE-CTTSEEEEEETTEEEEEETTTEECCC
T ss_pred             EEEECCCCCCCCCCccCcCCCCEEEEEEe-CCCCeEEEEECCCEEEEEhHHeEECC
Confidence            58999999999999999999999999997 56789999999999999999998654

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=3.8e-15  Score=106.10  Aligned_cols=55  Identities=33%  Similarity=0.724  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus        19 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~-~~~gWw~g~~~g~~G~~P~~yv~~~~   73 (78)
T 2ed0_A           19 KVVAIYDYTKDKEDELSFQEGAIIYVIKK-NDDGWYEGVMNGVTGLFPGNYVESIS   73 (78)
T ss_dssp             EEEECSCBCCSSTTBCCBCSSCEEEEEEE-CSSSEEEEEETTEEEEEETTSEEECS
T ss_pred             EEEECccCCccCcCcccccCCCEEEEEEe-CCCCEEEEEECCcEEEeChHHEEEcC
Confidence            58999999999999999999999999997 56789999999999999999998654

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.55  E-value=3.2e-15  Score=101.21  Aligned_cols=55  Identities=36%  Similarity=0.657  Sum_probs=49.7

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccc-eecccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEG-LIPSNYIEMK   56 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G-~vP~nyve~~   56 (376)
                      +.++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.| |||+|||+..
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~gG~~P~~yv~~~   59 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEK-QDGGWWRGDYGGKKQLWFPSNYVEEM   59 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEEGGGEEEC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEe-cCCCEEEEEECCeEEEEEChHHcEEC
Confidence            358999999999999999999999999997 567899999988886 9999999854

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.55  E-value=2.8e-15  Score=110.04  Aligned_cols=76  Identities=29%  Similarity=0.632  Sum_probs=51.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccccCcchhhhccCCCCCCcccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDDMNWYRAELDGKEGLIPSNYI  232 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~~~~~~~~~~~~g~~p~~~~  232 (376)
                      ..++|+|+|.++.+++|+|.+||++.|+.. +++||.|+.  +|+.|+||++||+++..                     
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~---------------------   61 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS---------------------   61 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC---------------------
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCC---------------------
Confidence            357899999999999999999999999998 578999997  89999999999998754                     


Q ss_pred             ccccccccccccChHHHHHhhc
Q psy10189        233 EMKNHDWYYGRITRADAERLLS  254 (376)
Q Consensus       233 ~~~~~~w~~g~i~r~~ae~~L~  254 (376)
                       ....+ |++.|+|.+|+.+|.
T Consensus        62 -~~~~~-~~~~~~r~~ae~lL~   81 (90)
T 3reb_B           62 -GGGTS-GGGRHRRRQAERMSQ   81 (90)
T ss_dssp             ----------------------
T ss_pred             -CCCcc-cccCcCHHHHHHHHh
Confidence             22233 999999999999985

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.55  E-value=3.8e-15  Score=104.74  Aligned_cols=55  Identities=31%  Similarity=0.639  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus        15 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~~~   69 (73)
T 3c0c_A           15 SCKALYDFEPENDGELGFREGDLITLTNQ-IDENWYEGMLHGQSGFFPLSYVQVLV   69 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE-CSSSEEEEEETTEEEEEEGGGEEEEE
T ss_pred             EEEECccCCCCCCCCccCcCCCEEEEEEe-cCCCEEEEEECCCEEEeChHHEEECC
Confidence            58999999999999999999999999997 56789999999999999999998643

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.55  E-value=3e-15  Score=103.46  Aligned_cols=55  Identities=25%  Similarity=0.436  Sum_probs=49.2

Q ss_pred             EEEEeecCCC-CCCCCccccCCCEEEEEeccCCccceeeccC--Cccceecccccccc
Q psy10189          2 EAIAKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~-~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~vP~nyve~~   56 (376)
                      .++|+|||+| +.++||+|++||+|.|+++..+++||.++..  |+.||||+|||+..
T Consensus         8 ~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   65 (67)
T 2kxc_A            8 KVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL   65 (67)
T ss_dssp             EEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEES
T ss_pred             EEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            6899999996 9999999999999999985456789999965  99999999999864

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.55  E-value=1.4e-15  Score=105.42  Aligned_cols=55  Identities=22%  Similarity=0.568  Sum_probs=50.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1wi7_A            9 RCQVAFSYLPQNDDELELKVGDIIEVVGE-VEEGWWEGVLNGKTGMFPSNFIKELS   63 (68)
T ss_dssp             CEEESSCBCCSSTTBCCBCTTCEECCCEE-EETTEEEECSTTCCEEEETTSEEECC
T ss_pred             EEEECccCCcCCCCCccCcCCCEEEEEEc-CCCCeEEEEECCcEEEEchHHEEECC
Confidence            58999999999999999999999999987 55689999999999999999998654

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.55  E-value=4.5e-15  Score=104.07  Aligned_cols=55  Identities=25%  Similarity=0.494  Sum_probs=49.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.  +|+.||||+|||+...
T Consensus         7 ~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~gWw~g~~~~~g~~G~~P~~yv~~~~   63 (73)
T 2lcs_A            7 RAVALYDFEPENDNELRLAEGDIVFISYK-HGQGWLVAENESGSKTGLVPEEFVSYIQ   63 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEE-ETTTEEEEECTTSSCEEEEESTTEEECC
T ss_pred             EEEECccCCCCCCCccCCcCCCEEEEEEE-cCCCEEEEEECCCCCEEEeeHHHEEECC
Confidence            68999999999999999999999999997 6668999996  4899999999998654

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.55  E-value=3.6e-15  Score=106.32  Aligned_cols=55  Identities=33%  Similarity=0.642  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (78)
T 2yuo_A            9 RAKALLDFERHDDDELGFRKNDIITIISQ-KDEHCWVGELNGLRGWFPAKFVEVLD   63 (78)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEe-cCCCEEEEEECCCEEEEehHHEEECC
Confidence            68999999999999999999999999997 56789999999999999999998654

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.55  E-value=5.3e-15  Score=103.52  Aligned_cols=56  Identities=32%  Similarity=0.663  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++..+++||.++.  +|+.||||+|||+...
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   65 (71)
T 2jt4_A            8 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR   65 (71)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECC
Confidence            5899999999999999999999999999743778999997  8999999999998654

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.55  E-value=3.4e-15  Score=100.47  Aligned_cols=55  Identities=25%  Similarity=0.499  Sum_probs=49.1

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC--Cccceecccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEMK   56 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~vP~nyve~~   56 (376)
                      ++++|+|||+++.++||+|++||+|.|+++ .+++||.++..  |+.||||++||+..
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYK-HGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEE-EETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEc-CCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            468999999999999999999999999997 56689999953  89999999999853

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.7e-15  Score=107.56  Aligned_cols=57  Identities=25%  Similarity=0.655  Sum_probs=51.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC-CccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~-~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      .++|+|||+++.++||+|++||+|.|+++.+ +++||.++.+|+.||||+|||+....
T Consensus        19 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           19 EVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             EEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             EEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            6899999999999999999999999999743 47899999999999999999986543

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.54  E-value=4.8e-15  Score=103.02  Aligned_cols=55  Identities=27%  Similarity=0.585  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   64 (69)
T 2dil_A           10 EYRALYDYTAQNPDELDLSAGDILEVILE-GEDGWWTVERNGQRGFVPGSYLEKLS   64 (69)
T ss_dssp             EEECCSCBCCSSSSSCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             EEEECccCCccCcCccCCCCCCEEEEEEC-CCCCEEEEEECCCEEEEehHHeEEcC
Confidence            58999999999999999999999999997 66789999999999999999998654

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.54  E-value=3.5e-15  Score=104.94  Aligned_cols=56  Identities=34%  Similarity=0.624  Sum_probs=51.2

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +.++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (73)
T 2dbm_A            8 PCCRALYDFEPENEGELGFKEGDIITLTNQ-IDENWYEGMLHGHSGFFPINYVEILV   63 (73)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEECCBC-SSSSEEEEEETTEEEEEESSSEEESS
T ss_pred             CEEEEccccCCCCCCCccCCCCCEEEEEEe-cCCCEEEEEECCCEEEechHHEEEcc
Confidence            368999999999999999999999999997 56789999999999999999998653

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.54  E-value=5.4e-15  Score=105.67  Aligned_cols=56  Identities=41%  Similarity=0.692  Sum_probs=50.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC---CccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~---~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++.+   +++||.++.+|++||||+|||+...
T Consensus        15 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   73 (79)
T 1uhc_A           15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE   73 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECC
Confidence            4899999999999999999999999999743   3789999999999999999998654

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.54  E-value=4.7e-15  Score=106.52  Aligned_cols=56  Identities=27%  Similarity=0.543  Sum_probs=51.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC-CccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~-~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||+++.++||+|++||+|.|+++.. +++||.++.+|++||||+|||+...
T Consensus        19 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   75 (81)
T 1x43_A           19 KARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLN   75 (81)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECC
Confidence            5899999999999999999999999999743 5789999999999999999998654

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.54  E-value=6.3e-15  Score=98.73  Aligned_cols=53  Identities=28%  Similarity=0.474  Sum_probs=48.3

Q ss_pred             EEEEeecC-CCCCCCCccccCCCEEEEEeccCCccceeeccC--Cccceeccccccc
Q psy10189          2 EAIAKHDF-NATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y-~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~vP~nyve~   55 (376)
                      .++|+||| .++.++||+|++||+|.|+++ .+++||.++..  |+.||||+|||+.
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITRE-EPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEE-CTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEe-cCCCeEEEEECCCCCEEEecHHHEEE
Confidence            58999999 899999999999999999997 56789999965  9999999999974

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.54  E-value=4.1e-15  Score=100.31  Aligned_cols=55  Identities=33%  Similarity=0.582  Sum_probs=49.5

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      +.++|+|||+++.++||+|++||+|.|+++  +++||.++ .+|+.||||+|||+...
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~Ww~~~~~~g~~G~~P~~yv~~~~   57 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD--RRQWWKVRNASGDSGFVPNNILDIMR   57 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG--GCCEEEEECTTSCEEEEEGGGEEEEC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc--CCCeEEEEECCCCEEEEEHHHeEEcc
Confidence            368999999999999999999999999987  56799997 68999999999998654

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.54  E-value=6e-15  Score=100.34  Aligned_cols=54  Identities=24%  Similarity=0.678  Sum_probs=49.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||.++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+..
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            8 LVLVLYDYQEKSPRELTVKKGDILTLLNS-TNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCCCCccCCCCCEEEEeEe-cCCCeEEEEECCEEEEEEHHHEEEC
Confidence            58999999999999999999999999997 5678999999999999999999853

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.54  E-value=3.2e-15  Score=103.82  Aligned_cols=54  Identities=24%  Similarity=0.578  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++  +++||.++.+|++||||+|||+...
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (69)
T 1uhf_A           10 EYIALYPYSSVEPGDLTFTEGEEILVTQK--DGEWWTGSIGDRSGIFPSNYVKPKD   63 (69)
T ss_dssp             EEECSSCBCCSSSSBCCBCTTCEEEECEE--ETTEEEECSTTCCEEECGGGCEECC
T ss_pred             EEEEeeeECCCCcCccCCCCCCEEEEEEe--CCCEEEEEeCCcEEEEchHHeEECC
Confidence            58999999999999999999999999986  4689999999999999999998654

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.54  E-value=5.1e-15  Score=106.82  Aligned_cols=65  Identities=31%  Similarity=0.480  Sum_probs=49.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceecccccccc----ccccccccCCH
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMK----NHDWYYGRITR   67 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~----~~~w~~g~isr   67 (376)
                      .|+|+|||.++.++||+|++||+|.|+++ .+++||.++.  +|++||||+|||+..    .++|...+..+
T Consensus         8 ~~~Alydy~a~~~~eLsf~~Gd~i~vl~~-~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~e~~~~~~~~~   78 (84)
T 4ag1_C            8 LFVALYDYNATRWTDLSFHKGEKFQILEF-GPGDWWEARSLTTGETGYIPSNYVAPVDSIQGEQKLISEEDL   78 (84)
T ss_dssp             EEEESSCBCCSBTTBCCBCTTCEEEEEEC-CSSSEEEEEETTTCCEEEEEGGGEEETTTCC-----------
T ss_pred             EEEEcccCCCCCCCcccccCCCEEEEEEe-cCCCeEEEEECCCCCEEEEehHHeEECCCcccccCCCcccCh
Confidence            58999999999999999999999999997 5568999996  899999999999853    35566665544

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.54  E-value=4e-15  Score=104.41  Aligned_cols=56  Identities=27%  Similarity=0.434  Sum_probs=50.0

Q ss_pred             EEEEeecCCC-CCCCCccccCCCEEEEEeccCCccceeeccC--Cccceeccccccccc
Q psy10189          2 EAIAKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~-~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|+| +.++||+|++||+|.|+++..+++||.++..  |++||||+|||+...
T Consensus         9 ~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~   67 (72)
T 1spk_A            9 KVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS   67 (72)
T ss_dssp             EEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECS
T ss_pred             EEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            6899999996 8999999999999999986456789999966  999999999998654

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.54  E-value=6.5e-15  Score=101.69  Aligned_cols=54  Identities=41%  Similarity=0.692  Sum_probs=49.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~   56 (376)
                      .++|+|+|.++.++||+|++||+|.|+++ .+++||.++ .+|+.||||+|||+..
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            4 IVVAMYDFQATEAHDLRLERGQEYIILEK-NDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEEC-SSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             EEEECccCCCCCCCeecCCcCCEEEEEEc-cCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            58999999999999999999999999997 667899999 6899999999999865

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.54  E-value=1.6e-15  Score=107.62  Aligned_cols=55  Identities=24%  Similarity=0.540  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.|+.+|+.||||+|||+...
T Consensus        20 ~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~-~~~gWw~g~~~g~~G~fP~nyV~~~~   74 (79)
T 1z9q_A           20 RAEALFDFTGNSKLELNFKAGDVIFLLSR-INKDWLEGTVRGATGIFPLSFVKILK   74 (79)
T ss_dssp             CEEESSCCCCSSTTBCCCCTTCCBCCCEE-SSSSEEEEEETTEEEEEEGGGEEESS
T ss_pred             EEEEcCccCCCCCCcccccCCCEEEEeEe-cCCCEEEEEECCeEEEecHHHEEECC
Confidence            48999999999999999999999999997 56799999999999999999998654

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.53  E-value=7.9e-15  Score=103.38  Aligned_cols=56  Identities=25%  Similarity=0.595  Sum_probs=50.8

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      +.++|+|+|+++.++||+|++||+|.|+++ + ++||.++.+|++||||+|||+....
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~-~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (74)
T 1j3t_A           11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-Q-ENWWFGEVHGGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE-C-SSEEEEESTTCCCEEEGGGEEECCC
T ss_pred             eEEEECCCCCCCCCCccCCCCCCEEEEEec-C-CCEEEEEECCcEEEEchHHeEECCC
Confidence            468999999999999999999999999997 4 5799999999999999999986543

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=5.5e-15  Score=105.62  Aligned_cols=55  Identities=35%  Similarity=0.742  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus        19 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   73 (79)
T 1x69_A           19 TAVALYDYQAAGDDEISFDPDDIITNIEM-IDDGWWRGVCKGRYGLFPANYVELRQ   73 (79)
T ss_dssp             CEEESSCCCCSSSSBCCCCTTCEEEEEEE-CSSSEEEEEETTEEEEEETTSEEECC
T ss_pred             EEEECccCCCCCCCCcCcCCCCEEEEeEe-cCCCeEEEEECCcEEEechHHEEECC
Confidence            58999999999999999999999999987 56789999999999999999998654

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.53  E-value=8e-15  Score=101.52  Aligned_cols=54  Identities=26%  Similarity=0.482  Sum_probs=49.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ + ++||.++ .+|++||||+|||+...
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~-~~Ww~~~~~~g~~G~~P~~yv~~~~   63 (68)
T 1wxt_A            9 KMQVLYEFEARNPRELTVVQGEKLEVLDH-S-KRWWLVKNEAGRSGYIPSNILEPLS   63 (68)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEEC-S-SSEEEEECTTSCEEEEEGGGEECCC
T ss_pred             EEEECceECCCCcCcCCCCCCCEEEEEEc-C-CCEEEEEECCCCEEEEEhHHcEECC
Confidence            58999999999999999999999999997 4 6899999 89999999999998654

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.53  E-value=5e-15  Score=101.75  Aligned_cols=54  Identities=22%  Similarity=0.639  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC--------Cccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--------GKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~--------g~~G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++..        |+.||||+|||+..
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNS-TNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEC-CSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEc-CCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            58999999999999999999999999997 56789999865        89999999999753

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=7e-15  Score=105.11  Aligned_cols=55  Identities=29%  Similarity=0.542  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (79)
T 2yun_A            9 LCKALYSFQARQDDELNLEKGDIVIIHEK-KEEGWWFGSLNGKKGHFPAAYVEELP   63 (79)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-CSSSCEEEESSSCEEEECSTTEEEES
T ss_pred             EEEECccCCcCCCCCcCCCCCCEEEEEEc-CCCCEEEEEECCCEEEEEhHHeEECC
Confidence            68999999999999999999999999987 56789999999999999999998654

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.5e-15  Score=104.08  Aligned_cols=55  Identities=18%  Similarity=0.568  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   64 (70)
T 2ega_A           10 QYVVVSNYKKQENSELSLQAGEVVDVIEK-NESGWWFVSTSEEQGWVPATYLEAQN   64 (70)
T ss_dssp             CEECCSCCCCCSSSSCCCCTTCBCEEEEE-CTTSEEEEECSSCEEEEEGGGCEESC
T ss_pred             EEEECceECCCCCCcccCCCCCEEEEEEc-cCCCeEEEEECCCEEEEehHHcEECC
Confidence            48999999999999999999999999997 56789999999999999999998654

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.53  E-value=7.6e-15  Score=106.78  Aligned_cols=53  Identities=30%  Similarity=0.718  Sum_probs=49.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc----CCccceeecc-CCccceecccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME----DDMNWYRAEL-DGKEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~----~~~~W~~~~~-~g~~G~vP~nyve   54 (376)
                      .++|+|||+++.++||+|++||+|.|+++.    .+++||.++. +|++||||+|||+
T Consensus        31 ~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~   88 (89)
T 2rf0_A           31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA   88 (89)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred             EEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCc
Confidence            589999999999999999999999999974    2678999997 9999999999997

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=4.8e-15  Score=108.12  Aligned_cols=56  Identities=32%  Similarity=0.583  Sum_probs=51.4

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      |+++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gWw~g~~~g~~G~~P~~yv~~~~   73 (88)
T 2cub_A           18 MPAYVKFNYMAEREDELSLIKGTKVIVMEK-CSDGWWRGSYNGQVGWFPSNYVTEEG   73 (88)
T ss_dssp             EEEEESSCCCCCSTTBCCCCTTEEEEEEEE-CTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CEEEEccccCCCCCCCcCCCCCCEEEEEEc-cCCCeEEEEECCcEEEEehHHEEECC
Confidence            369999999999999999999999999997 56789999999999999999998654

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=8.3e-15  Score=105.21  Aligned_cols=55  Identities=27%  Similarity=0.604  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus        12 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (81)
T 2ysq_A           12 SAEAVWDHVTMANRELAFKAGDVIKVLDA-SNKDWWWGQIDDEEGWFPASFVRLWV   66 (81)
T ss_dssp             EEEESSCCCCSSSSSCCCCTTCEEEEEEC-CSSSEEEEECSSCEEEEEGGGEEESS
T ss_pred             EEEEeeeECCCCCCcCCCCCCCEEEEEEE-cCcCEEEEEECCCEEEechHHEEEcC
Confidence            68999999999999999999999999997 56789999999999999999998654

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.53  E-value=7.8e-15  Score=104.34  Aligned_cols=56  Identities=25%  Similarity=0.559  Sum_probs=50.9

Q ss_pred             EEEEeecCCCC-CCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNAT-AEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~-~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++ .++||+|++||+|.|+++..+++||.++ .+|+.||||+|||+...
T Consensus        11 ~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~   68 (77)
T 2enm_A           11 KARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILP   68 (77)
T ss_dssp             EEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEEC
T ss_pred             EEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECC
Confidence            68999999999 9999999999999999974367899999 89999999999998654

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.53  E-value=5.3e-15  Score=104.86  Aligned_cols=55  Identities=22%  Similarity=0.588  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCC---ccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG---KEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g---~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.++   +.||||+|||+...
T Consensus        12 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~   69 (76)
T 2ed1_A           12 RVKTIYDCQADNDDELTFIEGEVIIVTGE-EDQEWWIGHIEGQPERKGVFPVSFVHILS   69 (76)
T ss_dssp             EEEESSCCCCSSSSBCCCCSSCEEEESSC-CSSSEEEEEETTCTTCEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCcCCcCcCCCCEEEEEEe-cCCCEEEEEECCCCCCEEEEehHHeEECC
Confidence            58999999999999999999999999986 667899999765   99999999998654

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.52  E-value=8.7e-15  Score=102.29  Aligned_cols=55  Identities=25%  Similarity=0.350  Sum_probs=50.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|.++.++||+|++||+|.|+.. .+++||.++  .+|+.|+||+|||+...
T Consensus         8 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~G~fP~~yv~~~~   64 (71)
T 2fpf_A            8 THRAIFRFVPRHEDELELEVDDPLLVELQ-AEDYWYEAYNMRTGARGVFPAYYAIEVT   64 (71)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEE-CTTSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             EEEECeeECccCCCcccCcCCcEEEEeEe-cCCCEEEEEECCCCCEEEeehHHEEECC
Confidence            48999999999999999999999999986 667999998  78999999999998543

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.52  E-value=6e-15  Score=101.89  Aligned_cols=55  Identities=33%  Similarity=0.650  Sum_probs=50.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ .+++||.++ .+|+.||||+|||+...
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A           10 KVVALYDYMPMNANDLQLRKGDEYFILEE-SNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             EEEBSSCCCCSSSSSCCCCSSCEEECCCC-CSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEc-cCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            58999999999999999999999999987 566899998 89999999999998543

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.52  E-value=1.1e-14  Score=102.50  Aligned_cols=55  Identities=22%  Similarity=0.657  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||.++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (73)
T 3thk_A            7 LVLALYDYQEKSPREVTMKKGDILTLLNS-TNKDWWKVEVNDRQGFVPAAYVKKLD   61 (73)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcCCCcCCCCccCCCCCCEEEEEEC-CCCCeEEEEECCcEEEEehHHeEECC
Confidence            58999999999999999999999999997 56789999999999999999998654

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.52  E-value=8.9e-15  Score=102.33  Aligned_cols=56  Identities=25%  Similarity=0.627  Sum_probs=50.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++. .+++||.++ .+|+.||||+|||+...
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (71)
T 1u5s_A            8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             EEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECC
T ss_pred             EEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECC
Confidence            689999999999999999999999999972 466899997 89999999999998654

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.52  E-value=6.7e-15  Score=102.01  Aligned_cols=54  Identities=35%  Similarity=0.674  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||.++.++||+|++||+|.|+++ .+++||.++ .+|+.||||+|||+..
T Consensus        12 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~~   66 (68)
T 1s1n_A           12 EYIAVGDFTAQQVGDLTFKKGEILLVIEK-KPDGWWIAKDAKGNEGLVPRTYLEPY   66 (68)
T ss_dssp             EEEECSCBCCSSSSCCCBCSSEEEEECSC-CSSSEEEEECSSSCEEEEESTTEEEC
T ss_pred             EEEEcccCCCCCCCcCCCCCCCEEEEEEc-CCCCeEEEEECCCCEEEEehHHeEEC
Confidence            58999999999999999999999999997 566899999 8999999999999864

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.52  E-value=1.1e-14  Score=102.49  Aligned_cols=54  Identities=39%  Similarity=0.688  Sum_probs=49.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~   56 (376)
                      .++|+|||.++.++||+|++||+|.|+++ .+++||.++.  +|++||||+|||+..
T Consensus        17 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           17 LFVALYDYEAITEDDLSFHKGEKFQILNS-SEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCcceEeCCCEEEEEEe-cCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            58999999999999999999999999997 5568999996  899999999999853

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.52  E-value=9.5e-15  Score=101.55  Aligned_cols=54  Identities=24%  Similarity=0.634  Sum_probs=49.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc-CCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~-~g~~G~vP~nyve~~   56 (376)
                      .++|+|||.++.++||+|++||+|.|+++ .+++||.++. +|+.||||+|||+..
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~~   62 (69)
T 4esr_A            8 TVVALYDYTANRSDELTIHRGDIIRVFFK-DNEDWWYGSIGKGQEGYFPANHVASE   62 (69)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSSEEEEEEETTEEEEEEGGGEEEH
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEe-cCCCeEEEEeCCCCEEEEchHHeEEC
Confidence            58999999999999999999999999997 5668999996 899999999999853

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.52  E-value=9.4e-15  Score=102.60  Aligned_cols=55  Identities=24%  Similarity=0.517  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||.++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus        15 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~~~   69 (72)
T 4glm_A           15 YGVALYRFQALEPNELDFEVGDKIRILAT-LEDGWLEGSLKGRTGIFPYRFVKLCP   69 (72)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSTTEEEEEETTEEEEEEGGGEEEEC
T ss_pred             EEEECccCCCCCCCcCCCCCCCEEEEEEc-cCCCEEEEEECCcEEEEChHHeEECC
Confidence            58999999999999999999999999997 56789999999999999999998654

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.52  E-value=1.2e-14  Score=101.03  Aligned_cols=55  Identities=27%  Similarity=0.442  Sum_probs=49.3

Q ss_pred             EEEEeecCC-CCCCCCccccCCCEEEEEeccCCccceeeccC--Cccceeccccccccc
Q psy10189          2 EAIAKHDFN-ATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~-~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+ ++.++||+|++||+|.|+++ .+++||.++..  |++||||+|||+...
T Consensus         4 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~~~g~~G~~P~~yv~~~~   61 (69)
T 1ruw_A            4 KFEAAYDFPGSGSSSELPLKKGDIVFISRD-EPSGWSLAKLLDGSKEGWVPTAYMTPYK   61 (69)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEE-CTTSEEEEEETTSSCEEEEEGGGEEECC
T ss_pred             EEEEccccCCCCCCCcccCCCCCEEEEEEe-cCCCeEEEEECCCCCEEEEehHHeEEcC
Confidence            589999996 99999999999999999997 56789999965  999999999998543

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=106.01  Aligned_cols=55  Identities=18%  Similarity=0.312  Sum_probs=49.9

Q ss_pred             EEEEeecCCC--CCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNA--TAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~--~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||++  +.++||+|++||+|.|+++ .+++||.+..+|+.||||+|||+...
T Consensus        18 ~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~fP~~yv~~~~   74 (88)
T 2dbk_A           18 FAKAIQKRVPCAYDKTALALEVGDIVKVTRM-NINGQWEGEVNGRKGLFPFTHVKIFD   74 (88)
T ss_dssp             EEEECSCBCCCTTCSSBCCBCTTCEEEEEEE-CTTSCEEEECSSCEEEECTTTEEECC
T ss_pred             EEEEcccccCCCCCCCcccCCCCCEEEEEEe-cCCCEEEEEeCCCEEEEehHHeEECC
Confidence            5899999995  4999999999999999997 56789999999999999999998654

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.52  E-value=7.8e-15  Score=100.80  Aligned_cols=54  Identities=24%  Similarity=0.519  Sum_probs=50.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .|+|+|||.++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+..
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~~   62 (65)
T 3u23_A            9 QCKVLFEYIPQNEDELELKVGDIIDINEE-VEEGWWSGTLNNKLGLFPSNFVKEL   62 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEE-EETTEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEeeeeCCCCcCCcCCCCCCEEEEEEe-cCCCEEEEEECCCEEEeehHHEEEC
Confidence            58999999999999999999999999997 5568999999999999999999854

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=104.33  Aligned_cols=55  Identities=31%  Similarity=0.640  Sum_probs=49.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~   56 (376)
                      +|+|+|||+++.++||+|++||+|.|+++.++++||.++.  +|++||||+|||+..
T Consensus        19 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   75 (81)
T 1x6g_A           19 QCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER   75 (81)
T ss_dssp             EEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEc
Confidence            5899999999999999999999999999755558999983  799999999999843

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.52  E-value=1.3e-14  Score=98.56  Aligned_cols=52  Identities=33%  Similarity=0.742  Sum_probs=47.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~   55 (376)
                      .++|+|||.++.++||+|++||+|.|+++ ++ +||.++  .+|+.||||+|||+.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~-~Ww~g~~~~~g~~G~~P~~yv~~   61 (62)
T 2iim_A            8 LVIALHSYEPSHDGDLGFEKGEQLRILEQ-SG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEEcccCCCCCCCCcCCCCCCEEEEEEc-CC-CEEEEEECCCCCEEEEEHHHEEE
Confidence            58999999999999999999999999997 43 899999  689999999999973

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.52  E-value=5.5e-15  Score=108.25  Aligned_cols=55  Identities=22%  Similarity=0.568  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||.++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus        20 ~~~Alydy~a~~~~eLsf~~Gd~i~V~~~-~~~gWw~g~~~g~~G~fPsnyV~~~~   74 (92)
T 2o2o_A           20 RCQVAFSYLPQNDDELELKVGDIIEVVGE-VEEGWWEGVLNGKTGMFPSNFIKELS   74 (92)
T ss_dssp             EEEECSCBCCCSSSCCCBCSSCEEECCCG-GGSSCBCCEETTEECCBCSSSEECCS
T ss_pred             EEEEccccCCCCCccccccCCCEEEEeEe-cCCCEEEEEECCeEEEeehHHEEECC
Confidence            68999999999999999999999999987 56789999999999999999998654

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=106.29  Aligned_cols=55  Identities=31%  Similarity=0.637  Sum_probs=50.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus        19 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   73 (88)
T 1x2q_A           19 KVRALYDFEAVEDNELTFKHGEIIIVLDD-SDANWWKGENHRGIGLFPSNFVTTNL   73 (88)
T ss_dssp             EEEESSCCCCCSSSCCCCCSSCEEEEEEC-SCSSSEEEEETTEEEEECGGGEESCS
T ss_pred             EEEEcccCCCCCcCccCCCCCCEEEEEEe-CCCCEEEEEECCcEEEEehHHEEEcC
Confidence            58999999999999999999999999996 66789999999999999999998643

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.52  E-value=6.9e-15  Score=102.24  Aligned_cols=56  Identities=23%  Similarity=0.466  Sum_probs=49.6

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCcc-ceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKE-GLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~-G~vP~nyve~~~   57 (376)
                      +.++|+|+|+++.++||+|++||+|.|+++ .+++||.++..++. ||||+|||+...
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~~~G~~P~~yv~~~~   64 (69)
T 2eqi_A            8 RTVKALYDYKAKRSDELTFCRGALIHNVSK-EPGGWWKGDYGTRIQQYFPSNYVEDIS   64 (69)
T ss_dssp             CEEEESSCBCCCSSSCCCBCTTCEEESCCC-CSSSCEEEEETTEEEEEECGGGEEECC
T ss_pred             cEEEECeeECCCCcCccCCCCCCEEEEEEc-CCCCeEEEEECCCCEEEEchHHcEECc
Confidence            368999999999999999999999999987 56689999977766 999999998654

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.52  E-value=6e-15  Score=98.33  Aligned_cols=55  Identities=35%  Similarity=0.782  Sum_probs=50.3

Q ss_pred             hhhhhcccCCCCCCCc-eeccCCCEEEEEecCCCcceeeee-CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGE-LEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~e-L~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.++| |+|++||+|.|+++.+++||.|++ +|+.|+||+|||+.+
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            4689999999998887 999999999999999999999997 689999999999753

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=7e-15  Score=102.86  Aligned_cols=55  Identities=20%  Similarity=0.527  Sum_probs=50.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++..|++||||+|||+...
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   64 (71)
T 2dnu_A           10 KYVTVQPYTSQSKDEIGFEKGVTVEVIRK-NLEGWWYIRYLGKEGWAPASYLKKAK   64 (71)
T ss_dssp             EEECSSCBCCSSTTBCCBCTTCEEEECCC-CSSSEEEEEETTEEEEEEGGGCEECC
T ss_pred             EEEECCccCCCCCCCCcCCCCCEEEEeEC-CCCCeEEEEECCcEEEEEHHHeEEcc
Confidence            58999999999999999999999999987 55789999988999999999998654

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=3.3e-15  Score=104.39  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=50.0

Q ss_pred             EEEEeecCCC-CCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNA-TAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~-~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|++ +.++||+|++||+|.|+++ .+++||.++  .+|+.||||+|||+...
T Consensus         9 ~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~-~~~~W~~g~~~~~g~~G~~P~~yv~~~~   66 (71)
T 2gqi_A            9 RVRAILPYTKVPDTDEISFLKGDMFIVHNE-LEDGWMWVTNLRTDEQGLIVEDLVEEVS   66 (71)
T ss_dssp             CEEESSCCCCCTTSSCCCCCTTCBCCCCEE-CSSSCEEEECTTTCCEEEECTTSEEECC
T ss_pred             EEEECcccCCCCCCCCCCCCCCCEEEEEEe-cCCCEEEEEECCCCCEEEeeHHHEEECC
Confidence            5899999999 9999999999999999987 566899998  78999999999998654

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.51  E-value=8.3e-15  Score=105.25  Aligned_cols=55  Identities=20%  Similarity=0.402  Sum_probs=48.9

Q ss_pred             EEEEeecC-CCCCCCCccccCCCEEEEEeccCCccceeeccC------Cccceeccccccccc
Q psy10189          2 EAIAKHDF-NATAEDELSFRKSQVLKILNMEDDMNWYRAELD------GKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y-~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~------g~~G~vP~nyve~~~   57 (376)
                      .|+|+||| .++.++||+|++||+|.|+++ .+++||.++..      |+.||||+|||+...
T Consensus        20 ~~~Alydy~~a~~~~eLsf~~GDiI~V~~~-~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           20 KVRALKDFWNLHDPTALNVRAGDVITVLEQ-HPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEESCS-SCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             EEEEccccCCCCCCCcccccCCCEEEEEEe-cCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            68999999 799999999999999999987 55689999953      799999999998653

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.51  E-value=1.3e-14  Score=103.44  Aligned_cols=55  Identities=36%  Similarity=0.615  Sum_probs=49.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.  +|+.||||+|||+...
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~-~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   63 (79)
T 3cqt_A            7 LFEALYDYEARTEDDLSFHKGEKFQILNS-SEGDWWEARSLTTGETGYIPSIYLAPVD   63 (79)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEC-TTSSEEEEEETTTCCEEEEEGGGEEEC-
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEe-cCCCeEEEEECCCCCEEEeehHHeEECC
Confidence            48999999999999999999999999987 5678999996  8999999999998643

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.51  E-value=1.4e-14  Score=99.25  Aligned_cols=54  Identities=33%  Similarity=0.590  Sum_probs=49.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~   56 (376)
                      .++|+|||.++.++||+|++||+|.|+++ .+++||.++.  +|+.||||+|||+..
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQP-IDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECeeeCCcCCCcCCCCCCCEEEEEEe-CCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            48999999999999999999999999997 5668999996  899999999999853

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=9e-15  Score=108.74  Aligned_cols=56  Identities=32%  Similarity=0.563  Sum_probs=50.6

Q ss_pred             EEEEeecCCCC--------CCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNAT--------AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~--------~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||+++        .++||+|++||+|.|+.+.++++||.++.+|++||||+|||+...
T Consensus        19 ~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   82 (97)
T 2csq_A           19 IFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQ   82 (97)
T ss_dssp             EEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECC
T ss_pred             EEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECC
Confidence            48999999999        799999999999999976566789999999999999999998654

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.50  E-value=5.7e-15  Score=103.02  Aligned_cols=56  Identities=38%  Similarity=0.775  Sum_probs=49.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCC--ccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG--KEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g--~~G~vP~nyve~~~~   58 (376)
                      +++|+|||+++.++||+|++||+|.|+++ .+++||.++..+  +.||||+|||+....
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ecz_A            9 EAIAKFNFNGDTQVEMSFRKGERITLLRQ-VDENWYEGRIPGTSRQGIFPITYVDVISG   66 (70)
T ss_dssp             CEEESSCCCCCSTTBCCCCTTCBCEEEEE-EETTEEEEEETTTTEEEEECTTTEEESSS
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCCeEEEEECCCCCEEEEchHHEEECCC
Confidence            58999999999999999999999999997 556899999654  999999999986543

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.50  E-value=1.8e-14  Score=99.65  Aligned_cols=54  Identities=28%  Similarity=0.546  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ + ++||.++ .+|++||||+|||+...
T Consensus        10 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~-~~Ww~~~~~~g~~G~~P~~yv~~~~   64 (68)
T 2k2m_A           10 WVLCNYDFQARNSSELSVKQRDVLEVLDD-S-RKWWKVRDPAGQEGYVPYNILTPYP   64 (68)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEEEEC-S-SSEEEEECTTSCCEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEc-C-CCeEEEEeCCCCEEEEEhhhEEEcC
Confidence            58999999999999999999999999997 4 6799997 68999999999998653

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1e-14  Score=106.89  Aligned_cols=56  Identities=32%  Similarity=0.721  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC--Cccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD--GKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~--g~~G~vP~nyve~~~~   58 (376)
                      +++|+|||+++.++||+|++||+|.|+++ .+++||.++.+  |++||||+|||+....
T Consensus        19 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~   76 (90)
T 2yup_A           19 EAVAQYTFKGDLEVELSFRKGEHICLIRK-VNENWYEGRITGTGRQGIFPASYVQVSRE   76 (90)
T ss_dssp             EEEECSCCCCCSSSBCCCCTTCEEEESSC-CCSSEEEEECTTTCCEEEEEGGGEEEEEC
T ss_pred             EEEEeecCCcCCcCcCCCCCCCEEEEEEE-cCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            68999999999999999999999999987 56789999975  9999999999996654

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.1e-14  Score=103.90  Aligned_cols=54  Identities=22%  Similarity=0.508  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~   57 (376)
                      +++|+|+|+++.++||+|++||+|.|+++  +++||.++.  +|+.||||+|||+...
T Consensus        19 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~gW~~g~~~~~g~~G~fP~~yv~~~~   74 (79)
T 1x6b_A           19 QVEITKAFFAKQADEVTLQQADVVLVLQQ--EDGWLYGERLRDGETGWFPEDFARFIS   74 (79)
T ss_dssp             EEEESSCCCCCSSSBCCCCTTEEEEEEEE--ETTEEEEEETTTCCEEEECGGGCEEEE
T ss_pred             EEEECeeECCCCcCCcCCCCCCEEEEEEe--CCCEEEEEECCCCCEEEEchHHEEECC
Confidence            68999999999999999999999999997  568999996  8999999999998654

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.6e-14  Score=104.67  Aligned_cols=57  Identities=21%  Similarity=0.416  Sum_probs=51.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEec-cCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNM-EDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~-~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      .++|+|||+++.++||+|++||+|.|+.+ ..+++||.++.+|+.||||+|||+....
T Consensus        10 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   67 (85)
T 2dlp_A           10 YVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA   67 (85)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCC
T ss_pred             EEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCC
Confidence            58999999999999999999999999984 2556899999999999999999986543

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.50  E-value=1.6e-14  Score=98.21  Aligned_cols=55  Identities=36%  Similarity=0.757  Sum_probs=51.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|++  +|+.|+||+|||+++
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            7 FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             EEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            3689999999999999999999999999999999999986  689999999999986

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=1.2e-14  Score=107.21  Aligned_cols=56  Identities=25%  Similarity=0.475  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++. .+++||.++.+|++||||+|||+...
T Consensus         7 ~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   63 (93)
T 1uff_A            7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMP   63 (93)
T ss_dssp             CEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECC
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcC
Confidence            589999999999999999999999999873 26789999999999999999998654

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.9e-14  Score=100.40  Aligned_cols=55  Identities=24%  Similarity=0.413  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ .+++||.++.  +|+.||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2ct3_A            9 PYRAMYQYRPQNEDELELREGDRVDVMQQ-CDDGWFVGVSRRTQKFGTFPGNYVAPVS   65 (70)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTEEEEEEEE-CSSSCEEEEESSSCCEEEECTTTEEETT
T ss_pred             EEEECccCCcCCcCCccCCCCCEEEEEEE-CCCCEEEEEECCCCCEEEechHHeEECC
Confidence            58999999999999999999999999997 5678999985  5999999999998654

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=8.5e-15  Score=103.82  Aligned_cols=55  Identities=31%  Similarity=0.640  Sum_probs=50.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus        12 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (76)
T 1ujy_A           12 IVKARFNFKQTNEDELSVCKGDIIYVTRV-EEGGWWEGTLNGRTGWFPSNYVREIK   66 (76)
T ss_dssp             EEECCSCBCCSSTTSCCBCSSCCEEESSC-CSSSCEEEEETTEEEEECTTTSEECC
T ss_pred             EEEECccCCcCCCCcccCCCCCEEEEEEe-cCCCEEEEEECCCEEEechHHEEECC
Confidence            58999999999999999999999999986 56789999999999999999998653

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.4e-14  Score=100.93  Aligned_cols=55  Identities=31%  Similarity=0.754  Sum_probs=48.2

Q ss_pred             CEEEEeecCCCCCCC--CccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAED--ELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~--eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      ++++|+|+|+++.++  ||+|++||+|.|++.  +++||.++ .+|+.||||+|||+...
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~--~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI--EGRWWKARRANGETGIIPSNYVQLID   63 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT--TSSEEEEECTTSCEEEEEGGGEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc--CCCeEEEEECCCCEEEEehHHEEECC
Confidence            369999999998765  999999999999985  46899996 79999999999998654

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.49  E-value=1.5e-14  Score=108.90  Aligned_cols=55  Identities=18%  Similarity=0.334  Sum_probs=48.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCcc--ceeeccC--------Cccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMN--WYRAELD--------GKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~--W~~~~~~--------g~~G~vP~nyve~~   56 (376)
                      .++|+|||.|++++||+|++||+|.|+++..+.+  ||.|+.+        |+.||||+|||+..
T Consensus        24 ~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~   88 (108)
T 1i1j_A           24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   88 (108)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             EEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEc
Confidence            5899999999999999999999999998732334  9999966        89999999999854

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.7e-14  Score=101.87  Aligned_cols=54  Identities=24%  Similarity=0.569  Sum_probs=48.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc----CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL----DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~----~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||+++ ++||+|++||+|.|+++ .+++||.++.    +|++||||+|||+...
T Consensus        12 ~~~alydy~~~-~~eLs~~~Gd~i~vl~~-~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~   69 (75)
T 2egc_A           12 VYVSIADYEGD-EETAGFQEGVSMEVLER-NPNGWWYCQILDGVKPFKGWVPSNYLEKKN   69 (75)
T ss_dssp             EEEECSCBCCC-SSSCCBCTTCEEEECEE-CTTSEEEEEECCSSSCEEEEEEGGGEEECC
T ss_pred             EEEECCCcCCC-CCcCCCCCCCEEEEEEc-CCCCeEEEEeCCCCCCcEEEEehHHCEECC
Confidence            58999999999 99999999999999997 5678999985    4689999999998643

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=100.47  Aligned_cols=54  Identities=39%  Similarity=0.680  Sum_probs=48.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ + ++||.++ .+|+.||||+|||+...
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~-~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (72)
T 2jw4_A            9 VVVAKFDYVAQQEQELDIKKNERLWLLDD-S-KSWWRVRNSMNKTGFVPSNYVERKN   63 (72)
T ss_dssp             EEECSSCCCCSSTTSCCCCTTCEEEEEEC-S-SSSEEEECTTSCEEEECTTSCEECC
T ss_pred             EEEECcCCCcCCCCcccCCCCCEEEEEEC-C-CCEEEEEECCCCEEEEEhhHEEEcC
Confidence            58999999999999999999999999996 3 5899999 58999999999998643

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.49  E-value=7.9e-15  Score=110.34  Aligned_cols=71  Identities=27%  Similarity=0.372  Sum_probs=56.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCcc---ceeccccccccccccccccCCHHHHHHHhc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKE---GLIPSNYIEMKNHDWYYGRITRADAERLLS   75 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~---G~vP~nyve~~~~~w~~g~isr~~ae~~l~   75 (376)
                      .++|+|||+|+.++||+|++||+|.|+++ .+++||.++.+|+.   |+||+|||++...  ..+...+.+++..+.
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~--~~~~~~~~~~~~~~~   80 (108)
T 2rqv_A            7 YAIVLYDFKAEKADELTTYVGENLFICAH-HNCEWFIAKPIGRLGGPGLVPVGFVSIIDI--ATGYATGNDVIEDIK   80 (108)
T ss_dssp             CEEESSCCCCCSSSBCCCCSSEEECCCCE-ETTTEEEECCSSSSCCCEEEESTTCBCCCS--SSSCCCSCCHHHHHT
T ss_pred             EEEECCCcCCCCCCcCCcCCCCEEEEeEe-cCCCEEEEEECCccCCeeEeecceEEEecC--CCCcccchhHHHHHH
Confidence            58999999999999999999999999987 56789999987766   9999999997543  223344445555554

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.49  E-value=1.5e-14  Score=107.33  Aligned_cols=55  Identities=33%  Similarity=0.683  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCC------CCCccccCCCEEEEE-eccCCccceeecc-CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATA------EDELSFRKSQVLKIL-NMEDDMNWYRAEL-DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~------~~eLsf~~Gd~i~v~-~~~~~~~W~~~~~-~g~~G~vP~nyve~~~   57 (376)
                      .|+|||||+++.      ++||+|++||+|.|+ +. .+++||.++. +|+.||||+|||+...
T Consensus        19 ~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~-~~~gWw~g~~~~g~~G~~Psnyv~~~~   81 (96)
T 1wie_A           19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDM-DEDGFYEGELLDGQRGLVPSNFVDFVQ   81 (96)
T ss_dssp             EEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSC-CSSSCCEEEETTCCBCBCCTTSEECCC
T ss_pred             EEEECCccCCCcccCCCCCCeeeECCCCEEEEeEec-CCCCEEEEEECCCCEEEEchHHEEEcC
Confidence            589999999988      999999999999999 54 6778999997 9999999999998654

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.49  E-value=1.4e-14  Score=100.96  Aligned_cols=55  Identities=25%  Similarity=0.550  Sum_probs=49.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ .+++||.++  .+|+.||||+|||+...
T Consensus         9 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2cuc_A            9 MFVALHTYSAHRPEELDLQKGEGIRVLGK-YQDGWLKGLSLLTGRTGIFPSDYVIPVS   65 (70)
T ss_dssp             CEECCSCBCCCSTTBCCBCTTCEEEEEEE-EETTEEEEEETTTCCEEEEEGGGCEECC
T ss_pred             EEEECeeECcCCCCcCCCCCCCEEEEEEe-cCCCeEEEEECCCCCEEEEchHHeEECc
Confidence            48999999999999999999999999997 456899999  78999999999998654

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=99.25  Aligned_cols=54  Identities=28%  Similarity=0.494  Sum_probs=48.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ + ++||.++ .+|+.||||+|||+...
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~-~~Ww~~~~~~g~~G~~P~~yv~~~~   63 (68)
T 1wxb_A            9 YVKILYDFTARNANELSVLKDEVLEVLED-G-RQWWKLRSRSGQAGYVPCNILGEAS   63 (68)
T ss_dssp             CEECSSCBCCSSSSBCCBCTTCEEEEEEC-S-SSEEEEECTTSCEEEEETTTCCBCC
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEEc-C-CCEEEEEECCCCEEEEEHHHeEECC
Confidence            48999999999999999999999999996 3 6799998 68999999999998654

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.49  E-value=2e-14  Score=103.05  Aligned_cols=56  Identities=32%  Similarity=0.614  Sum_probs=49.4

Q ss_pred             EEEEeecCCCCCCC-CccccCCCEEEEEeccCC----ccceeecc-CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAED-ELSFRKSQVLKILNMEDD----MNWYRAEL-DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~-eLsf~~Gd~i~v~~~~~~----~~W~~~~~-~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++ ||+|++||+|.|+++.++    ++||.++. +|+.||||+|||+...
T Consensus        16 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   77 (80)
T 2v1r_A           16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK   77 (80)
T ss_dssp             EEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC-
T ss_pred             EEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcC
Confidence            58999999999999 999999999999997432    38999997 8999999999998653

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.48  E-value=3.7e-14  Score=101.60  Aligned_cols=55  Identities=22%  Similarity=0.491  Sum_probs=49.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC-----Cccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD-----GKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~-----g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++..     +++||||+|||+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~   68 (80)
T 1ue9_A            9 IAQVTSAYVASGSEQLSLAPGQLILILKK-NTSGWWQGELQARGKKRQKGWFPASHVKLLG   68 (80)
T ss_dssp             EEEECSCCCCCSTTBCCCCTTCEEEEEEE-CSSSEEEEEECSCCSSCCEEEEETTSEEECC
T ss_pred             EEEECcccCCCCCCCCCCCCCCEEEEEEe-cCCCcEEEEECCCCCCCcEEEEchHHeEECC
Confidence            48999999999999999999999999997 55789999954     489999999998654

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.48  E-value=2.6e-14  Score=105.06  Aligned_cols=56  Identities=25%  Similarity=0.627  Sum_probs=50.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++. .+++||.++ .+|++||||+|||+...
T Consensus        19 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   76 (91)
T 1wx6_A           19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS   76 (91)
T ss_dssp             EEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEE
T ss_pred             EEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECC
Confidence            589999999999999999999999999972 456899998 78999999999998654

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.47  E-value=2.1e-14  Score=100.69  Aligned_cols=53  Identities=30%  Similarity=0.698  Sum_probs=48.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc---CCcc---ceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKE---GLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~---~g~~---G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.| ++ .+++||.++.   +|+.   ||||+|||+..
T Consensus        12 ~~~alydy~~~~~~eLs~~~Gd~i~v-~~-~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~   70 (72)
T 2kgt_A           12 KYVGLWDFKSRTDEELSFRAGDVFHV-AR-KEEQWWWATLLDEAGGAVAQGYVPHNYLAER   70 (72)
T ss_dssp             EEECCTTCBCSSTTSCBCCTTCCEEE-EE-ECSSCEEEEEECTTSCEEEEEEECTTTSEEE
T ss_pred             EEEEcccCCCCCcCCcCCCCCCEEEE-ee-CCCCEEEEEEcCCCCCEeCCcEEcHhHEEEc
Confidence            68999999999999999999999999 76 5678999996   7999   99999999853

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.47  E-value=3.3e-14  Score=105.98  Aligned_cols=55  Identities=45%  Similarity=0.889  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+...
T Consensus        36 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   90 (98)
T 1udl_A           36 QVIAMYDYAANNEDELSFSKGQLINVMNK-DDPDWWQGEINGVTGLFPSNYVKMTT   90 (98)
T ss_dssp             EEEESSCCCCSSTTSCCCCTTCEEEECBC-CSSSEEBCBSSSCBCCEETTSEEECC
T ss_pred             EEEECCCCCCCCCCccCCcCCCEEEEEEe-cCCCEEEEEECCcEEEEehHHeEEcC
Confidence            58999999999999999999999999997 56789999999999999999998654

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4.4e-14  Score=102.36  Aligned_cols=54  Identities=30%  Similarity=0.669  Sum_probs=49.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~   56 (376)
                      .|+|+|||+++.++||+|++||+|.|+++ .+++||.++ .+|++||||+|||+..
T Consensus        21 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~g~~G~~P~~yv~~~   75 (85)
T 2yuq_A           21 VVIALYDYQTNDPQELALRRNEEYCLLDS-SEIHWWRVQDRNGHEGYVPSSYLVEK   75 (85)
T ss_dssp             EEEESSCCCCSCSSBCCCCBTEEEEEEEC-CSSSEEEEECSSSCEEEEETTTCEEC
T ss_pred             EEEECcCCCCCCCCcCCCCCCCEEEEEEe-cCCCeEEEEECCCCEEEEehHHeEEc
Confidence            48999999999999999999999999997 556899996 7899999999999864

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=4e-14  Score=100.67  Aligned_cols=55  Identities=33%  Similarity=0.613  Sum_probs=49.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccC---Ccc------ceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELD---GKE------GLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~---g~~------G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++..   |+.      ||||+|||+...
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~   72 (77)
T 2d8j_A            9 YFVALFDYQARTAEDLSFRAGDKLQVLDT-SHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDS   72 (77)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCCEEEEEC-CSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECC
T ss_pred             EEEEccCCCCCCCCccCCCCCCEEEEEEC-CCCCeEEEEECCCCCcCcccCCceEECHHHeeEcC
Confidence            58999999999999999999999999997 56789999965   888      999999998543

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.46  E-value=4.2e-14  Score=104.22  Aligned_cols=56  Identities=32%  Similarity=0.614  Sum_probs=50.1

Q ss_pred             EEEEeecCCCCCCC-CccccCCCEEEEEeccCC----ccceeecc-CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAED-ELSFRKSQVLKILNMEDD----MNWYRAEL-DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~-eLsf~~Gd~i~v~~~~~~----~~W~~~~~-~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++ ||+|++||+|.|+++.++    ++||.++. +|+.||||+|||+...
T Consensus        16 ~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~   77 (92)
T 1jqq_A           16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK   77 (92)
T ss_dssp             EEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECC
Confidence            58999999999999 999999999999997443    48999996 8999999999999654

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.5e-14  Score=100.69  Aligned_cols=54  Identities=19%  Similarity=0.378  Sum_probs=47.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~   57 (376)
                      .|+|||||+++.++||+|++||+|.|++.  +++||.++.  +|++||||+|||+...
T Consensus        19 ~~~Alydy~a~~~~eLs~~~Gd~i~v~~~--~~~Ww~~~~~~~g~~G~~P~~yv~~~~   74 (79)
T 2cud_A           19 FLAVLSDYPSPDISPPIFRRGEKLRVISD--EGGWWKAISLSTGRESYIPGICVARVS   74 (79)
T ss_dssp             EEEESSCSSCTTTSCCSSCTTCEEEEEEE--ETTEEEEEETTTCCEEEEEGGGEEEEC
T ss_pred             EEEEccCCCCCCCCcCCCCCCCEEEEEec--CCCeEEEEECCCCCEEEeeHHHeEEcc
Confidence            48999999999999999999999999984  357999984  6999999999998654

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.45  E-value=3e-14  Score=105.16  Aligned_cols=56  Identities=39%  Similarity=0.703  Sum_probs=50.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCC---ccceeeccCCc-cceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDD---MNWYRAELDGK-EGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~---~~W~~~~~~g~-~G~vP~nyve~~~   57 (376)
                      .|+|||||+++.++||+|++||+|.|+++.++   ++||.++.+++ .||||+|||+...
T Consensus        19 ~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~   78 (93)
T 1wxu_A           19 VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG   78 (93)
T ss_dssp             CEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECC
T ss_pred             EEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcC
Confidence            58999999999999999999999999997443   58999998877 9999999998654

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.45  E-value=2.5e-14  Score=104.67  Aligned_cols=57  Identities=18%  Similarity=0.314  Sum_probs=48.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEec--------------cCCccceeecc--CCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNM--------------EDDMNWYRAEL--DGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~--------------~~~~~W~~~~~--~g~~G~vP~nyve~~~~   58 (376)
                      +|+|+|||.++.++||+|++||+|.|+.+              .++.+||.++.  +|++||||+|||+....
T Consensus        13 ~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             EEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            58999999999999999999999999953              12338999974  79999999999986543

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.45  E-value=9.2e-15  Score=103.88  Aligned_cols=53  Identities=28%  Similarity=0.600  Sum_probs=48.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      .++|+|||++++++||+|++||+|.|+++ .+++||.++ .+|++||||+|||+.
T Consensus        22 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           22 LVIALYDYQTNDPQELALRCDEEYYLLDS-SEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             CCCCCCCBCCCCTTSCCBCSSSCCSCCCT-TSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCCCEEEEECCCCEEEEehHHEEE
Confidence            37899999999999999999999999987 556899998 599999999999974

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.45  E-value=8.1e-15  Score=102.45  Aligned_cols=55  Identities=35%  Similarity=0.626  Sum_probs=49.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccc-eeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEG-LIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G-~vP~nyve~~~   57 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ .+++||.++.+|+.| |||+|||+...
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~gG~~P~~yv~~~~   63 (71)
T 1hsq_A            8 AVKALFDYKAQREDELTFIKSAIIQNVEK-QEGGWWRGDYGGKKQLWFPSNYVEEMV   63 (71)
T ss_dssp             CCCCSSCCCCSSSSSCCCCTTCCCBSCCC-BTTTEECCBCSSSCSCCEETTTCCSCS
T ss_pred             EEEECCCCCcCCCCccCCCCCCEEEEEEe-cCCCEEEEEECCeEEeEEChHHcEECC
Confidence            47899999999999999999999999997 566899999988887 99999998654

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.45  E-value=4.6e-14  Score=99.36  Aligned_cols=55  Identities=35%  Similarity=0.726  Sum_probs=51.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++. +.+||.++.+|+.|+||++||+.+
T Consensus        10 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   65 (74)
T 1gbq_A           10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK   65 (74)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             eEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEc
Confidence            5689999999999999999999999999987 678999999999999999999864

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.45  E-value=6.5e-14  Score=101.59  Aligned_cols=52  Identities=35%  Similarity=0.674  Sum_probs=47.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      .|+|+|||+++.++||+|++||+|.|++.  +++||.++ .+|+.||||+|||+.
T Consensus        33 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~--~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           33 IVIAKWDYTAQQDQELDIKKNERLWLLDD--SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEESSCCCCCSSSBCCCCTTEEEEEEEC--CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             EEEECccCCCCCCCEeccCCCCEEEEEec--CCCeEEEEECCCCEEEeehHHEEe
Confidence            48999999999999999999999999996  45899999 689999999999973

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=6.7e-14  Score=103.49  Aligned_cols=56  Identities=23%  Similarity=0.425  Sum_probs=50.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CC--ccceeec--cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DD--MNWYRAE--LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~--~~W~~~~--~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|+|+++.++||+|++||+|.|+++. .+  ++||.++  .+|+.|+||+|||+...
T Consensus        18 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~   78 (94)
T 2e5k_A           18 TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKAD   78 (94)
T ss_dssp             EEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECC
T ss_pred             EEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcc
Confidence            589999999999999999999999999873 23  7899999  89999999999998643

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.44  E-value=3.8e-14  Score=100.55  Aligned_cols=45  Identities=24%  Similarity=0.730  Sum_probs=40.6

Q ss_pred             CCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189         11 ATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus        11 ~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      |++++||+|++||+|.|+++ .+++||.++.+|++||||+|||+..
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~   46 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNS-TNKDWWKVEVNDRQGFVPAAYVKKL   46 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCC-CCSSCCCEEETTEEECCCGGGEEEC
T ss_pred             CcCCCccCCCCCCEEEEEEe-cCCCEEEEEECCcEEEEEeeEEEEc
Confidence            57889999999999999997 5578999999999999999999854

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.44  E-value=8.2e-14  Score=101.32  Aligned_cols=53  Identities=34%  Similarity=0.615  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc--CCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.|+++.  ++||.++.  +|++||||+|||+..
T Consensus        27 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~--~~Ww~g~~~~~g~~G~~P~~yv~~~   81 (86)
T 2oi3_A           27 IVVALYDYEAIHHEDLSFQKGDQMVVLEES--GEWWKARSLATRKEGYIPSNYVARV   81 (86)
T ss_dssp             EEEESSCCCCSSSSCCCCCTTCEEEEEEES--SSEEEEEETTTCCEEEEEGGGEEEG
T ss_pred             EEEECccCCCCCCCcCcCCCCCEEEEEEcC--CCeEEEEECCCCCEEEEehHHcEEc
Confidence            589999999999999999999999999974  48999997  999999999999854

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.43  E-value=9.4e-14  Score=93.21  Aligned_cols=56  Identities=36%  Similarity=0.796  Sum_probs=52.1

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+++
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            35789999999999999999999999999998999999999999999999999763

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.43  E-value=1e-13  Score=110.13  Aligned_cols=57  Identities=39%  Similarity=0.699  Sum_probs=51.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      .++|+|||.++.++||+|++||+|.|+++.++++||.|+.+|++||||+|||+....
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             EEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             EEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            589999999999999999999999999874467899999999999999999997644

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=1.1e-13  Score=93.87  Aligned_cols=56  Identities=30%  Similarity=0.755  Sum_probs=52.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||++++
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             eEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            46899999999999999999999999999999999999999999999999998764

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.43  E-value=1.4e-13  Score=92.03  Aligned_cols=55  Identities=45%  Similarity=0.904  Sum_probs=51.8

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      .++|+|+|.++.+++|+|++||++.|+++.+++||.|+.+|+.|+||++||++++
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            4789999999999999999999999999999999999999999999999998763

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.42  E-value=1.5e-13  Score=91.93  Aligned_cols=55  Identities=31%  Similarity=0.746  Sum_probs=51.9

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      .++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+++.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            5789999999999999999999999999999999999999999999999998763

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.42  E-value=1.4e-13  Score=98.72  Aligned_cols=57  Identities=33%  Similarity=0.846  Sum_probs=53.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+++..
T Consensus        18 ~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (83)
T 1neg_A           18 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA   74 (83)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCT
T ss_pred             eEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCC
Confidence            468999999999999999999999999999999999999999999999999998754

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.42  E-value=9.2e-14  Score=97.98  Aligned_cols=54  Identities=31%  Similarity=0.625  Sum_probs=48.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc---CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||.++.++||+|++||+|.|+++ + ++||.++.   +|+.|+||+|||++..
T Consensus        13 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~-~~W~~g~~~~~~g~~G~~P~~yv~~~~   69 (74)
T 2m0y_A           13 YGVAFYNYDARGADELSLQIGDTVHILET-Y-EGWYRGYTLRKKSKKGIFPASYIHLKE   69 (74)
T ss_dssp             CEEECSEECCCSSSBCCEETTEEEEEEEB-S-SSCEEEEESSCSSCCEEECGGGEEECC
T ss_pred             EEEEceeeCCCCcCcccCCCCCEEEEEEc-C-CCeEEEEECCCCCCEEEEehHHEEEec
Confidence            38999999999999999999999999997 4 67999985   7999999999998643

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.42  E-value=4.3e-14  Score=101.97  Aligned_cols=57  Identities=18%  Similarity=0.448  Sum_probs=48.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc--------------CCccceeec--cCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME--------------DDMNWYRAE--LDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~--------------~~~~W~~~~--~~g~~G~vP~nyve~~~~   58 (376)
                      +|+|+|+|.++.++||+|++||+|.|+.+.              ++++||.++  .+|+.|+||+|||+....
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             EEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            689999999999999999999999999531              234899995  579999999999986543

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.42  E-value=1e-13  Score=94.65  Aligned_cols=57  Identities=30%  Similarity=0.849  Sum_probs=53.3

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      .++|+|+|.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+..+
T Consensus         3 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             EEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCC
Confidence            578999999999999999999999999999999999999999999999999987653

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.42  E-value=1.9e-13  Score=93.41  Aligned_cols=57  Identities=32%  Similarity=0.704  Sum_probs=53.2

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      .++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+..+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCC
Confidence            478999999999999999999999999999999999999999999999999987543

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.41  E-value=1.7e-13  Score=92.88  Aligned_cols=56  Identities=25%  Similarity=0.643  Sum_probs=52.1

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEec-CCCcceeeeeCCeeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.++.+++|+|++||+|.|+.+ .+++||.|+.+|+.|+||++||+++..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC-
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCC
Confidence            57899999999999999999999999998 889999999999999999999998754

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.41  E-value=1.5e-13  Score=99.03  Aligned_cols=57  Identities=23%  Similarity=0.618  Sum_probs=53.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.  +|+.|+||++||+++++
T Consensus         7 ~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (84)
T 4ag1_C            7 TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDS   65 (84)
T ss_dssp             CEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTT
T ss_pred             EEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCC
Confidence            4689999999999999999999999999999999999998  89999999999999865

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.41  E-value=2.3e-13  Score=90.95  Aligned_cols=54  Identities=37%  Similarity=0.696  Sum_probs=50.7

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC--Ceeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.+++|+|++||+|.|+++.+++||.|+..  |+.|+||++||+++
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            4789999999999999999999999999999999999986  99999999999875

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.41  E-value=1.9e-13  Score=105.46  Aligned_cols=55  Identities=29%  Similarity=0.527  Sum_probs=49.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec---cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE---LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~---~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++   .+|+.||||+|||++..
T Consensus         5 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~   62 (120)
T 2kym_A            5 FAVTLYEFKAERDDELDVSPGENLSICAH-YDYEWFIAKPINRLGGPGLVPVSYVRIID   62 (120)
T ss_dssp             EEEECSCBCCCSTTCCCBCTTCEEEEEEE-ETTTEEEEEESSSCSCCCCEEGGGEEEEC
T ss_pred             EEEEcccCCCCCCCccCCCCCCEEEEEEe-cCCCEEEEEECCCCCCEEEEchHHEEEcc
Confidence            68999999999999999999999999997 567899997   46889999999998653

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.40  E-value=2.3e-13  Score=92.98  Aligned_cols=55  Identities=27%  Similarity=0.816  Sum_probs=51.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC--CCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.  +++||.|+.+|+.|+||++||+++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            7 EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            5689999999999999999999999999885  789999999999999999999875

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.40  E-value=2.2e-13  Score=91.71  Aligned_cols=55  Identities=33%  Similarity=0.689  Sum_probs=51.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||++.|+.+.+++||.|+.+|+.|+||++||+++
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            4688999999999999999999999999999999999999999999999999875

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.40  E-value=2.5e-13  Score=90.73  Aligned_cols=55  Identities=35%  Similarity=0.808  Sum_probs=51.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||++.|+++.+++||.|+.+|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            3578999999999999999999999999998999999999999999999999864

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.40  E-value=2.7e-13  Score=90.62  Aligned_cols=55  Identities=51%  Similarity=1.130  Sum_probs=51.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            3578999999999999999999999999999999999999999999999999875

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=2.3e-13  Score=94.06  Aligned_cols=58  Identities=22%  Similarity=0.507  Sum_probs=54.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.++.+|+.|+||++||+++..+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             EEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCCS
T ss_pred             CEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCCC
Confidence            5689999999999999999999999999999999999999999999999999988653

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.9e-13  Score=93.61  Aligned_cols=58  Identities=41%  Similarity=0.871  Sum_probs=54.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+++..+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            8 NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            4688999999999999999999999999999999999999999999999999988654

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.39  E-value=2.2e-13  Score=104.89  Aligned_cols=53  Identities=26%  Similarity=0.565  Sum_probs=48.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc---CCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~vP~nyve~~   56 (376)
                      .++|+|+|+++.++||+|++||+|.|+++ + ++||.++.   +|+.||||+|||++.
T Consensus        61 ~~~Alydy~a~~~~eLsf~~Gd~i~vl~~-~-~gWw~g~~~~~~g~~G~fP~nyV~~~  116 (119)
T 2rqr_A           61 HGVAIYNFQGSGAPQLSLQIGDVVRIQET-C-GDWYRGYLIKHKMLQGIFPKSFIHIK  116 (119)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEEE-E-TTEEEEEESSCTTCEEEEEGGGBCCC
T ss_pred             EEEEccccCCCCCCcccCcCCCEEEEEEc-C-CCEEEEEECCCCCCEEEeChhHEEEe
Confidence            48999999999999999999999999997 3 48999997   899999999999864

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.39  E-value=3.6e-13  Score=93.11  Aligned_cols=56  Identities=27%  Similarity=0.804  Sum_probs=52.4

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecC--CCcceeeeeCCeeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.++.++||+|++||+|.|+.+.  +++||.|+.+|+.|+||++||+++..
T Consensus         4 ~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~   61 (69)
T 2ydl_A            4 YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   61 (69)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             EEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCC
Confidence            578999999999999999999999999985  88999999999999999999998754

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.39  E-value=3.1e-13  Score=93.19  Aligned_cols=57  Identities=39%  Similarity=0.845  Sum_probs=53.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   60 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVP   60 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCc
Confidence            368899999999999999999999999999999999999999999999999998754

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.39  E-value=3.5e-13  Score=90.12  Aligned_cols=55  Identities=53%  Similarity=1.045  Sum_probs=51.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||++.|+++.+++||.|+.+|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            3578999999999999999999999999999999999999999999999999875

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.39  E-value=1.7e-13  Score=95.38  Aligned_cols=52  Identities=27%  Similarity=0.493  Sum_probs=45.2

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeecc----CCccceecccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAEL----DGKEGLIPSNYIE   54 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~~----~g~~G~vP~nyve   54 (376)
                      ++|+|||.|+.++||+|++||+|+|+++. ++++||.++.    .+++||||+|||-
T Consensus        20 ~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl~   76 (82)
T 1u3o_A           20 TVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLC   76 (82)
T ss_dssp             EECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGSC
T ss_pred             EEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEEe
Confidence            78999999999999999999999999873 2568999983    2378999999993

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.38  E-value=3e-13  Score=96.26  Aligned_cols=57  Identities=25%  Similarity=0.704  Sum_probs=52.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|+.  +|+.|+||++||++++.
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   64 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR   64 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC--
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCc
Confidence            4689999999999999999999999999999999999998  89999999999998864

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.7e-13  Score=93.10  Aligned_cols=57  Identities=25%  Similarity=0.491  Sum_probs=53.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++.+++.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2p_A            8 EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSG   64 (68)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCC
T ss_pred             CEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCC
Confidence            568999999999999999999999999999999999999999999999999998754

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.38  E-value=4.3e-13  Score=93.96  Aligned_cols=57  Identities=23%  Similarity=0.509  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCC--CCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~--~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.+.  .++||+|++||+|.|+.+.+++||.|+++|+.|+||++||+.+..
T Consensus        10 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   68 (73)
T 2ebp_A           10 GRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSS   68 (73)
T ss_dssp             EEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCC
T ss_pred             eEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCC
Confidence            468999999976  899999999999999999999999999999999999999998754

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.38  E-value=3.6e-13  Score=92.80  Aligned_cols=57  Identities=21%  Similarity=0.450  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCC--CCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~--~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++  .+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+++..
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBCS
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcCC
Confidence            368999999999  889999999999999999999999999999999999999998753

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.38  E-value=5e-13  Score=91.60  Aligned_cols=55  Identities=36%  Similarity=0.679  Sum_probs=52.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEC
Confidence            5689999999999999999999999999999999999999999999999999865

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.38  E-value=3.7e-13  Score=90.58  Aligned_cols=55  Identities=31%  Similarity=0.790  Sum_probs=51.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+++
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            4689999999999999999999999999999999999999999999999999763

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.38  E-value=5.9e-13  Score=92.08  Aligned_cols=57  Identities=33%  Similarity=0.746  Sum_probs=53.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A            8 PRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG   64 (68)
T ss_dssp             CEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCS
T ss_pred             eEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCC
Confidence            468999999999999999999999999999999999999999999999999998754

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.37  E-value=2.6e-13  Score=91.30  Aligned_cols=53  Identities=28%  Similarity=0.700  Sum_probs=50.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL  207 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~  207 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            56899999999999999999999999999988999999999999999999986

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.37  E-value=4.3e-13  Score=90.91  Aligned_cols=55  Identities=45%  Similarity=0.869  Sum_probs=51.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+..++.|+||++||++.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEESC
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEEe
Confidence            4689999999999999999999999999999999999999999999999999863

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.37  E-value=2e-13  Score=104.19  Aligned_cols=54  Identities=30%  Similarity=0.588  Sum_probs=47.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEec----cCCccceeecc----------CCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNM----EDDMNWYRAEL----------DGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~----~~~~~W~~~~~----------~g~~G~vP~nyve~   55 (376)
                      +|+|||||+++.++||+|++||+|.|+.+    ..+++||.|+.          +|+.||||+|||+.
T Consensus        46 ~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~  113 (115)
T 1bb9_A           46 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER  113 (115)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEE
T ss_pred             EEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEE
Confidence            58999999999999999999999999992    36678999963          48899999999974

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.37  E-value=5e-13  Score=89.29  Aligned_cols=53  Identities=45%  Similarity=0.983  Sum_probs=50.6

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      .++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||++
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            57899999999999999999999999999999999999999999999999975

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.37  E-value=3.7e-13  Score=93.41  Aligned_cols=57  Identities=33%  Similarity=0.721  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC---CCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~---~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.   +++||.|+.+|+.|+||++||+.+..
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCC
Confidence            4688999999999999999999999999987   79999999999999999999998743

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.8e-13  Score=92.50  Aligned_cols=57  Identities=42%  Similarity=0.894  Sum_probs=53.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++.+++.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            8 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             EEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             EEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            468999999999999999999999999999999999999999999999999998754

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.37  E-value=5.2e-13  Score=91.20  Aligned_cols=56  Identities=36%  Similarity=0.798  Sum_probs=52.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+++.
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK   62 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcC
Confidence            46899999999999999999999999999999999999999999999999999864

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.37  E-value=5.6e-13  Score=89.08  Aligned_cols=55  Identities=38%  Similarity=0.869  Sum_probs=51.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||++.|+.+.+++||.++.+|+.|+||++||+++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            3588999999999999999999999999999999999999999999999999753

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=3.9e-13  Score=93.83  Aligned_cols=57  Identities=30%  Similarity=0.612  Sum_probs=51.4

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEe-cCCCcceeee-eCCeeeeeecccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTD-RSDQHWWHGE-IGARKGLFPATYILNME  210 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~-~~~~~w~~~~-~~~~~G~~P~~~v~~~~  210 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+. ..+++||.|+ .+|+.|+||++||++..
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            457899999999999999999999999999 7889999999 68999999999998753

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.36  E-value=5.7e-13  Score=90.42  Aligned_cols=55  Identities=35%  Similarity=0.865  Sum_probs=52.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++|+++.|+++.+++||.++.+|+.|+||++||+++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            4689999999999999999999999999999999999999999999999999875

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.36  E-value=1.9e-13  Score=96.82  Aligned_cols=57  Identities=33%  Similarity=0.687  Sum_probs=53.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.+|+.|+||++||+.+..
T Consensus        19 ~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~   75 (79)
T 1z9q_A           19 PRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD   75 (79)
T ss_dssp             CCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSC
T ss_pred             eEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCC
Confidence            568999999999999999999999999999999999999999999999999998754

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.36  E-value=5.3e-13  Score=92.26  Aligned_cols=55  Identities=25%  Similarity=0.555  Sum_probs=51.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCC-----eeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA-----RKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~-----~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+..+     +.|+||++||++.
T Consensus         8 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             EEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             EEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            468999999999999999999999999999999999999765     9999999999864

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.36  E-value=4.8e-13  Score=90.69  Aligned_cols=56  Identities=25%  Similarity=0.552  Sum_probs=51.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.++||+|++||+|.|+...+++||.|+  .+|+.|+||++||+++.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            468899999999999999999999999999999999998  58999999999998763

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.36  E-value=5.3e-13  Score=88.85  Aligned_cols=54  Identities=30%  Similarity=0.894  Sum_probs=49.9

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.+++|+|++||++.|+++.+++||.|+ .+|+.|+||++||+++
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            47899999999999999999999999999999999998 6899999999999763

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.36  E-value=5e-13  Score=91.30  Aligned_cols=56  Identities=29%  Similarity=0.847  Sum_probs=52.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+ .+|+.|+||++||.+..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   60 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH   60 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecC
Confidence            357899999999999999999999999999999999999 68999999999998864

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.36  E-value=5.5e-13  Score=91.88  Aligned_cols=56  Identities=30%  Similarity=0.548  Sum_probs=52.6

Q ss_pred             hhhhcccCCCC--CCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~--~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.++  .+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+++..
T Consensus         3 ~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   60 (67)
T 2bzy_A            3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP   60 (67)
T ss_dssp             EEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCS
T ss_pred             EEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCC
Confidence            57899999998  999999999999999999999999999999999999999998754

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=9.5e-13  Score=94.17  Aligned_cols=58  Identities=41%  Similarity=0.872  Sum_probs=53.6

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCC--CcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSD--QHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+  ++||.|+.+|+.|+||++||+++..
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             CEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            457899999999999999999999999999875  8999999999999999999998754

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.36  E-value=6.8e-13  Score=89.31  Aligned_cols=54  Identities=44%  Similarity=0.952  Sum_probs=50.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC--CCcceeeeeCCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.  +++||.|+.+|+.|+||++||+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL   59 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEE
Confidence            3588999999999999999999999999986  78999999999999999999975

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.36  E-value=8.1e-13  Score=86.84  Aligned_cols=52  Identities=37%  Similarity=0.675  Sum_probs=48.5

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCC-CcceeeeeCCeeeeeeccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIGARKGLFPATYIL  207 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~~~~G~~P~~~v~  207 (376)
                      .++|+|+|.++.+++|+|++||+|.|+.+.+ ++||.|+.+|+.|+||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            3689999999999999999999999999985 799999999999999999984

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.36  E-value=7.5e-13  Score=89.42  Aligned_cols=56  Identities=34%  Similarity=0.796  Sum_probs=51.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeee-eeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKG-LFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G-~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+++.| +||++||+++.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            468899999999999999999999999999999999999988886 99999998763

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.36  E-value=3.4e-13  Score=93.50  Aligned_cols=57  Identities=40%  Similarity=0.877  Sum_probs=52.9

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+.+ +++||.|+.+|+.|+||++||+++..
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCC
Confidence            3578999999999999999999999999988 78999999999999999999998765

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.36  E-value=8.8e-13  Score=92.57  Aligned_cols=58  Identities=26%  Similarity=0.765  Sum_probs=53.6

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecC--CCcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+.+.  +++||.|+.+|+.|+||++||+.+..
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCc
Confidence            35789999999999999999999999999985  89999999999999999999998754

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.35  E-value=6.9e-13  Score=88.66  Aligned_cols=54  Identities=24%  Similarity=0.628  Sum_probs=51.2

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.+++|+|++||.|.|+++.+++||.|..+|+.|+||++||++.
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEEC
Confidence            578999999999999999999999999999999999999999999999999875

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.5e-12  Score=94.89  Aligned_cols=58  Identities=41%  Similarity=0.800  Sum_probs=54.2

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.++||+|++||+|.|+.+.+++||.|+..++.|+||++||++...
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (88)
T 1x2q_A           17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLN   74 (88)
T ss_dssp             CEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSS
T ss_pred             CeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCC
Confidence            4578999999999999999999999999999999999999999999999999998754

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.35  E-value=7.6e-13  Score=91.54  Aligned_cols=58  Identities=34%  Similarity=0.666  Sum_probs=54.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+++..+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            8 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCSC
T ss_pred             cEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCCC
Confidence            4689999999999999999999999999998999999999999999999999987543

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.35  E-value=9.7e-13  Score=91.26  Aligned_cols=57  Identities=32%  Similarity=0.730  Sum_probs=53.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++.+++.|+||++||+++..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             cEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            468999999999999999999999999999999999999999999999999998754

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=92.92  Aligned_cols=58  Identities=33%  Similarity=0.705  Sum_probs=54.1

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG   74 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSS
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCC
Confidence            3568999999999999999999999999999999999999999999999999998754

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=8.9e-13  Score=92.53  Aligned_cols=57  Identities=35%  Similarity=0.838  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec---CCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR---SDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~---~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+   .+++||.|+.+|+.|+||++||+++..
T Consensus         9 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2dl7_A            9 CFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS   68 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCS
T ss_pred             EEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCC
Confidence            468999999999999999999999999998   478999999999999999999998754

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.35  E-value=6.5e-13  Score=90.93  Aligned_cols=56  Identities=20%  Similarity=0.399  Sum_probs=51.7

Q ss_pred             hhhhhcccCCC-CCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTP-QEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~-~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.+ +.++||+|++||+|.|+...+++||.|+  .+|+.|+||++||++++
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            46899999999 9999999999999999999899999999  57999999999998763

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.35  E-value=4e-13  Score=93.46  Aligned_cols=54  Identities=44%  Similarity=0.900  Sum_probs=51.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+..++.|+||++||++
T Consensus        18 ~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           18 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             eEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            568999999999999999999999999999889999999999999999999975

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.35  E-value=5.4e-13  Score=91.47  Aligned_cols=56  Identities=30%  Similarity=0.859  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||++++
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            8 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            56899999999999999999999999999988999999999999999999999864

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.35  E-value=1e-12  Score=93.73  Aligned_cols=57  Identities=28%  Similarity=0.655  Sum_probs=53.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC----CcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD----QHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~----~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+    ++||.++.+|+.|+||++||++++.
T Consensus        14 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (79)
T 1uhc_A           14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             eEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCC
Confidence            57899999999999999999999999999876    8999999999999999999998754

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.34  E-value=7.7e-13  Score=92.80  Aligned_cols=57  Identities=40%  Similarity=0.866  Sum_probs=53.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+..
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (73)
T 3c0c_A           14 PSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVP   70 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCC
Confidence            568999999999999999999999999999999999999999999999999998643

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.34  E-value=7.9e-13  Score=94.46  Aligned_cols=58  Identities=26%  Similarity=0.577  Sum_probs=53.6

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCc-ceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~-w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++..+||+|++||+|.|+++.+++ ||.|+.+|+.|+||++||+.+..
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   68 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLS   68 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESS
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCC
Confidence            35789999999999999999999999999998777 99999999999999999998754

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.34  E-value=1.2e-12  Score=89.14  Aligned_cols=56  Identities=25%  Similarity=0.521  Sum_probs=51.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec-CCCcceeeeeCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||++.|+.+ .+++||.++.+|+.|+||++||++++
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             EEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            468999999999999999999999999984 56679999999999999999999864

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=8.5e-13  Score=94.31  Aligned_cols=58  Identities=19%  Similarity=0.458  Sum_probs=54.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.++.+++.||||++||+++...
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   66 (80)
T 2ekh_A            9 TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE   66 (80)
T ss_dssp             EEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCC
T ss_pred             CEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCC
Confidence            4689999999999999999999999999999999999999999999999999988653

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.34  E-value=7.5e-13  Score=91.24  Aligned_cols=57  Identities=32%  Similarity=0.678  Sum_probs=52.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCC--eeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~--~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||++.|+++.+++||.|+..+  +.|+||++||+.+..
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             EEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            568999999999999999999999999999899999999855  999999999998754

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.34  E-value=1.3e-12  Score=92.92  Aligned_cols=58  Identities=34%  Similarity=0.748  Sum_probs=54.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++.+|+.|+||++||+++...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            8 RRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCC
T ss_pred             eEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCc
Confidence            4689999999999999999999999999999999999999999999999999988653

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.34  E-value=6.2e-13  Score=91.16  Aligned_cols=56  Identities=27%  Similarity=0.611  Sum_probs=50.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++. ++||.|+ .+|+.|+||+|||+..+.
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~~g~~G~~Psnyv~~~~~   61 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNAANRTGYVPSNYVERKLE   61 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECTTSCEEECCCCSEEEC--
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeCCCCEEEeChHHEeEcCC
Confidence            4689999999999999999999999999984 7999999 489999999999988654

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.34  E-value=1.5e-12  Score=93.33  Aligned_cols=59  Identities=32%  Similarity=0.556  Sum_probs=54.0

Q ss_pred             hhhhhhhcccCCCCCCCceeccCCCEEEEEec--CCCcceeeeeCCeeeeeeccccccccc
Q psy10189        153 EECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       153 ~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ....++|+|+|.++.++||+|++||+|.|+.+  .+++||.|+.+|+.|+||++||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNS   76 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCC
Confidence            34679999999999999999999999999998  468999999999999999999998754

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.34  E-value=1.2e-12  Score=91.08  Aligned_cols=54  Identities=13%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             EEEeecCCCC------CCCCccccCCCEEEEEeccCCccceee--ccCCccceecccccccc
Q psy10189          3 AIAKHDFNAT------AEDELSFRKSQVLKILNMEDDMNWYRA--ELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         3 ~~al~~y~~~------~~~eLsf~~Gd~i~v~~~~~~~~W~~~--~~~g~~G~vP~nyve~~   56 (376)
                      ++|++.|.+.      +++||+|++||+|.|+++..+++||.+  ..+|+.||||+|||+..
T Consensus         7 ~~~~~~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C            7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             EEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ceEEEEEEecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            4455555543      345999999999999997456789999  57899999999999854

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.34  E-value=8.4e-13  Score=90.49  Aligned_cols=54  Identities=35%  Similarity=0.906  Sum_probs=50.5

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC--------Ceeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--------ARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--------~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+..        ++.|+||++||+++
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            5789999999999999999999999999999999999876        89999999999875

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.33  E-value=9.2e-13  Score=90.61  Aligned_cols=54  Identities=31%  Similarity=0.796  Sum_probs=49.1

Q ss_pred             hhhhhcccCCCCCCC-ceeccCCCEEEEEecCC-----Ccceeeee-CCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPG-ELEFRRGDVITVTDRSD-----QHWWHGEI-GARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~-eL~~~~g~~i~v~~~~~-----~~w~~~~~-~~~~G~~P~~~v~~  208 (376)
                      ..++|+|+|.|+.++ ||+|++||++.|+++.+     ++||.|+. +|+.|+||+|||+.
T Consensus         8 ~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~   68 (69)
T 1nm7_A            8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI   68 (69)
T ss_dssp             -CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEE
T ss_pred             eEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEE
Confidence            468899999999999 99999999999999875     49999998 89999999999975

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.33  E-value=1.3e-12  Score=91.65  Aligned_cols=55  Identities=24%  Similarity=0.686  Sum_probs=51.6

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.+ .++||+|++||+|.|+++.+++||.|+.+|+.|+||++||++++.
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   56 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS   56 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCS
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            4789999998 899999999999999999999999999999999999999998754

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.33  E-value=7.5e-13  Score=93.64  Aligned_cols=58  Identities=40%  Similarity=0.798  Sum_probs=53.3

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCC---eeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA---RKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~---~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||.|++.+   +.|+||++||+++..
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~   70 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD   70 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCC
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCC
Confidence            3578999999999999999999999999999999999999865   999999999998754

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.33  E-value=1e-12  Score=90.53  Aligned_cols=55  Identities=29%  Similarity=0.701  Sum_probs=51.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+ .+|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            357899999999999999999999999999999999999 5899999999999987

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.33  E-value=1.2e-12  Score=91.91  Aligned_cols=57  Identities=33%  Similarity=0.860  Sum_probs=53.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++.+|+.|+||++||+++..
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   62 (73)
T 3thk_A            6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDP   62 (73)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             EEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCC
Confidence            468899999999999999999999999999999999999999999999999998754

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.33  E-value=9.1e-13  Score=91.69  Aligned_cols=57  Identities=26%  Similarity=0.780  Sum_probs=53.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC--CCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.  +++||.|+.+|+.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   66 (70)
T 2da9_A            8 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSG   66 (70)
T ss_dssp             EEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCC
T ss_pred             cEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCC
Confidence            4689999999999999999999999999985  88999999999999999999998754

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.33  E-value=1.3e-12  Score=91.80  Aligned_cols=55  Identities=25%  Similarity=0.684  Sum_probs=51.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++.  +|+.|+||++||+++
T Consensus        16 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           16 TLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            5688999999999999999999999999999999999997  899999999999875

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.33  E-value=6.2e-13  Score=91.68  Aligned_cols=57  Identities=30%  Similarity=0.692  Sum_probs=52.6

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeecccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNME  210 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~  210 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+.+.+++||.++ .+|+.|+||++||++++
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            3578999999999999999999999999999999999998 68999999999999864

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.33  E-value=1.1e-12  Score=91.60  Aligned_cols=57  Identities=32%  Similarity=0.771  Sum_probs=52.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec--CCCcceeee-eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+  .+++||.|+ .+|+.|+||++||+++..
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   66 (71)
T 1u5s_A            7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   66 (71)
T ss_dssp             SEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCC
T ss_pred             EEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCC
Confidence            568999999999999999999999999998  688999997 789999999999998754

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.33  E-value=9.7e-13  Score=92.33  Aligned_cols=57  Identities=39%  Similarity=0.849  Sum_probs=53.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (73)
T 2dbm_A            8 PCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA   64 (73)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSC
T ss_pred             CEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccC
Confidence            568999999999999999999999999999999999999999999999999998743

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.33  E-value=1.1e-12  Score=87.58  Aligned_cols=53  Identities=26%  Similarity=0.493  Sum_probs=48.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC-Ccceeeee--CCeeeeeeccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEI--GARKGLFPATYIL  207 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~--~~~~G~~P~~~v~  207 (376)
                      ..++|+|+|.++.++||+|++||++.|+...+ ++||.++.  +|+.|+||++||+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             -CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            35789999999999999999999999999886 79999998  8999999999986

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.33  E-value=1.3e-12  Score=89.27  Aligned_cols=55  Identities=35%  Similarity=0.680  Sum_probs=51.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.  +|+.|+||++||+++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            4689999999999999999999999999999999999998  899999999999875

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8.8e-13  Score=92.23  Aligned_cols=57  Identities=26%  Similarity=0.633  Sum_probs=53.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+.+..
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (72)
T 2dl8_A           10 IEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDT   66 (72)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCS
T ss_pred             EEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCC
Confidence            468999999999999999999999999999889999999999999999999998754

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=91.89  Aligned_cols=57  Identities=32%  Similarity=0.627  Sum_probs=53.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.+|+.|+||++||+.++.
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           14 TYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             eEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCC
Confidence            468999999999999999999999999999999999999999999999999998753

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=8.2e-13  Score=92.25  Aligned_cols=57  Identities=35%  Similarity=0.711  Sum_probs=53.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC---CCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS---DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~---~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.   +++||.|+.+|+.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (71)
T 2cre_A            8 LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSG   67 (71)
T ss_dssp             EEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCC
T ss_pred             EEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCC
Confidence            5689999999999999999999999999987   89999999999999999999998754

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.32  E-value=1.4e-12  Score=92.71  Aligned_cols=52  Identities=13%  Similarity=0.297  Sum_probs=42.5

Q ss_pred             EeecCCCC---CCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccccc
Q psy10189          5 AKHDFNAT---AEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         5 al~~y~~~---~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~   56 (376)
                      |+|+|.++   .++||+|++||+|.|+++..+++||.|+  .+|+.||||+|||+..
T Consensus        20 a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           20 EYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             CBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             ECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            44555553   2599999999999999974367999999  6899999999999854

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.32  E-value=8.8e-13  Score=92.33  Aligned_cols=56  Identities=32%  Similarity=0.694  Sum_probs=51.6

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee---CCee---eeeecccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARK---GLFPATYILNME  210 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~~~~---G~~P~~~v~~~~  210 (376)
                      ...++|+|+|.++.+++|+|++||+|.| .+.+++||.|+.   +|+.   |+||++||++++
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            4578999999999999999999999999 888899999998   7999   999999998764

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=92.08  Aligned_cols=57  Identities=35%  Similarity=0.643  Sum_probs=52.3

Q ss_pred             hhhhhcccCCCCC-------CCceeccCCCEEEEEe-cCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQE-------PGELEFRRGDVITVTD-RSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~-------~~eL~~~~g~~i~v~~-~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.       +++|+|++||+|.|+. ..+++||.|+.+|+.|+||++||+++..
T Consensus         8 ~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            8 KIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSL   72 (75)
T ss_dssp             EEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECCC
T ss_pred             cEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEccC
Confidence            4689999999999       9999999999999997 5789999999999999999999998753

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.32  E-value=1.5e-12  Score=87.67  Aligned_cols=55  Identities=27%  Similarity=0.610  Sum_probs=50.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec-CCCcceeeee--CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||++.|+++ .+++||.|+.  +|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            357899999999999999999999999998 4899999998  899999999999763

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=9.3e-13  Score=91.63  Aligned_cols=57  Identities=25%  Similarity=0.561  Sum_probs=53.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.++..++.|+||++||+++..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (70)
T 2ega_A            9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS   65 (70)
T ss_dssp             BCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCC
T ss_pred             cEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCC
Confidence            468999999999999999999999999999999999999999999999999998765

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=5.1e-13  Score=93.18  Aligned_cols=57  Identities=19%  Similarity=0.398  Sum_probs=53.0

Q ss_pred             hhhhhcccCCC-CCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTP-QEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~-~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.+ +.++||+|++||+|.|+.+.+++||.++  .+|+.|+||++||+++..
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            57899999999 9999999999999999999999999998  589999999999998754

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.32  E-value=4.2e-13  Score=92.85  Aligned_cols=58  Identities=29%  Similarity=0.754  Sum_probs=53.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.+|+.|+||++||+++..+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSS
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCC
Confidence            4689999999999999999999999999998899999999999999999999987653

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.9e-12  Score=94.23  Aligned_cols=57  Identities=30%  Similarity=0.538  Sum_probs=52.8

Q ss_pred             hhhhhcccCCCC--CCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQ--EPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~--~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.+.  .+++|+|++||+|.|+.+.+++||.|+++|+.|+||++||+.+..
T Consensus        17 ~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   75 (88)
T 2dbk_A           17 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP   75 (88)
T ss_dssp             EEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCS
T ss_pred             EEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCC
Confidence            568999999954  999999999999999999999999999999999999999998754

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2e-12  Score=92.68  Aligned_cols=57  Identities=35%  Similarity=0.736  Sum_probs=53.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+..|+.|+||++||+.+..
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (81)
T 2ysq_A           11 VSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN   67 (81)
T ss_dssp             EEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSC
T ss_pred             eEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCC
Confidence            468999999999999999999999999999999999999999999999999998755

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.32  E-value=1.3e-12  Score=91.11  Aligned_cols=57  Identities=25%  Similarity=0.545  Sum_probs=52.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+...+++||.|+  .+|+.|+||++||+++..
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~   65 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK   65 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC-
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCC
Confidence            468999999999999999999999999999999999999  689999999999998754

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.7e-12  Score=91.46  Aligned_cols=58  Identities=34%  Similarity=0.654  Sum_probs=54.2

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQS   74 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCC
Confidence            3568999999999999999999999999999999999999999999999999998754

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.7e-12  Score=90.66  Aligned_cols=57  Identities=28%  Similarity=0.620  Sum_probs=53.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeee--CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+. +++||.|+.  +|+.|+||++||+++..
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (71)
T 2jt4_A            7 KRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRD   66 (71)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTT
T ss_pred             CEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCC
Confidence            5689999999999999999999999999987 899999998  89999999999998754

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.31  E-value=8.1e-13  Score=92.38  Aligned_cols=58  Identities=24%  Similarity=0.519  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec-CCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+ .+.+||.|+.+|+.|+||++||+++..+
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             cEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            468999999999999999999999999874 7789999999999999999999987653

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.31  E-value=1.7e-12  Score=86.71  Aligned_cols=53  Identities=32%  Similarity=0.688  Sum_probs=49.5

Q ss_pred             hhhhcccC-CCCCCCceeccCCCEEEEEecCCCcceeeeeC--Ceeeeeecccccc
Q psy10189        156 LVQALYDF-TPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYILN  208 (376)
Q Consensus       156 ~~~al~~~-~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~  208 (376)
                      .++|+|+| .++.+++|+|++||+|.|+.+.+++||.|+..  |+.|+||++||++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            47899999 89999999999999999999999999999986  9999999999975

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=94.97  Aligned_cols=54  Identities=33%  Similarity=0.804  Sum_probs=50.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC-----CCcceeeee-CCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS-----DQHWWHGEI-GARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-----~~~w~~~~~-~~~~G~~P~~~v~~  208 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.     +++||.|+. +|+.|+||++||+|
T Consensus        30 ~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           30 PVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             cEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            5789999999999999999999999999985     899999998 99999999999975

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.5e-12  Score=90.85  Aligned_cols=57  Identities=23%  Similarity=0.460  Sum_probs=53.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++..++.|+||++||+++..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (71)
T 2dnu_A            9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKD   65 (71)
T ss_dssp             EEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCC
T ss_pred             CEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccC
Confidence            468999999999999999999999999999889999999999999999999998754

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.31  E-value=1.8e-12  Score=87.80  Aligned_cols=54  Identities=26%  Similarity=0.720  Sum_probs=49.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++. ++||.|+  .+|+.|+||++||+++
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            5689999999999999999999999999985 5999999  5899999999999863

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1.1e-12  Score=92.81  Aligned_cols=57  Identities=35%  Similarity=0.722  Sum_probs=53.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++.+|+.|+||++||+++..
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 2epd_A           11 VEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAG   67 (76)
T ss_dssp             EEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSS
T ss_pred             EEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCC
Confidence            468999999999999999999999999999889999999999999999999998765

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.30  E-value=1.7e-12  Score=90.10  Aligned_cols=56  Identities=38%  Similarity=0.737  Sum_probs=52.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+. +|+.|+||++||++..
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            7 PTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             CEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            4689999999999999999999999999999999999998 8999999999999864

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.8e-12  Score=92.42  Aligned_cols=57  Identities=21%  Similarity=0.420  Sum_probs=53.1

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.++||+|++||+|.|+.+ +++||.|+.  +++.|+||++||+++..
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           17 LPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             CCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            4578999999999999999999999999999 899999998  89999999999998754

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.30  E-value=1.4e-12  Score=87.79  Aligned_cols=55  Identities=40%  Similarity=0.768  Sum_probs=49.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC-CcceeeeeC-Ceeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIG-ARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+ ++||.++.. |+.|+||++||+++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            46889999999999999999999999998854 589999987 99999999999763

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.9e-12  Score=92.31  Aligned_cols=58  Identities=31%  Similarity=0.866  Sum_probs=54.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.++.+|+.|+||.+||+.+..+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            8 RLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSC
T ss_pred             CEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCC
Confidence            5689999999999999999999999999998999999999999999999999988653

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.5e-12  Score=90.89  Aligned_cols=57  Identities=37%  Similarity=0.710  Sum_probs=52.2

Q ss_pred             hhhhhcccCCCCC-------CCceeccCCCEEEEEecCC-CcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQE-------PGELEFRRGDVITVTDRSD-QHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~-------~~eL~~~~g~~i~v~~~~~-~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.       +++|+|++||+|.|+.+.+ ++||.|+.+|+.|+||++||+++..
T Consensus         8 ~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             EEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             cEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCC
Confidence            4689999999998       8999999999999999876 4799999999999999999998754

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.30  E-value=1.3e-12  Score=87.64  Aligned_cols=54  Identities=30%  Similarity=0.644  Sum_probs=50.2

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC--Ceeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+..  |+.|+||++||+++
T Consensus         3 ~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            3 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            5789999999999999999999999999999999999974  89999999999875

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.30  E-value=1.5e-12  Score=92.16  Aligned_cols=57  Identities=32%  Similarity=0.759  Sum_probs=53.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+.+..
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A           11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             EEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCc
Confidence            568999999999999999999999999999899999999999999999999998753

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.6e-12  Score=94.05  Aligned_cols=57  Identities=32%  Similarity=0.538  Sum_probs=53.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec--CCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+  .+++||.|+++|+.|+||++||+++..
T Consensus         9 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   67 (85)
T 2dlp_A            9 GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA   67 (85)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCC
T ss_pred             EEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCC
Confidence            468999999999999999999999999987  889999999999999999999998765

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=93.59  Aligned_cols=56  Identities=38%  Similarity=0.630  Sum_probs=51.5

Q ss_pred             hhhhhcccC-CCCCCCceeccCCCEEEEEecCCCcceeeeeC------Ceeeeeecccccccc
Q psy10189        155 CLVQALYDF-TPQEPGELEFRRGDVITVTDRSDQHWWHGEIG------ARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~-~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~------~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+| .++.+++|+|++||+|.|+.+.+++||.|++.      |+.|+||++||++++
T Consensus        19 ~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           19 LKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             EEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             eEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            578999999 89999999999999999999999999999974      699999999998864

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.8e-12  Score=90.95  Aligned_cols=58  Identities=38%  Similarity=0.719  Sum_probs=52.9

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecC--CCcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+.+.  +++||.++.+|+.|+||++||+++..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCC
Confidence            35689999999999999999999999999987  45999999999999999999998754

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.30  E-value=1.9e-12  Score=90.54  Aligned_cols=57  Identities=26%  Similarity=0.501  Sum_probs=52.3

Q ss_pred             hhhhhcccCCC-CCCCceeccCCCEEEEEec-CCCcceeeeeC--Ceeeeeeccccccccc
Q psy10189        155 CLVQALYDFTP-QEPGELEFRRGDVITVTDR-SDQHWWHGEIG--ARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~-~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~--~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.+ +.+++|+|++||+|.|+.+ .+++||.|++.  ++.|+||++||+++..
T Consensus         8 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   68 (72)
T 1spk_A            8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             eEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCC
Confidence            46899999996 8999999999999999987 78999999986  9999999999998764

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.30  E-value=1.2e-12  Score=91.04  Aligned_cols=59  Identities=31%  Similarity=0.643  Sum_probs=53.4

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCC--eeeeeecccccccccC
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYILNMEDD  212 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~--~~G~~P~~~v~~~~~~  212 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+++.+++||.++..+  +.|+||++||+++..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            3568999999999999999999999999999889999999865  9999999999987543

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.29  E-value=1.2e-12  Score=90.60  Aligned_cols=56  Identities=30%  Similarity=0.656  Sum_probs=52.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+ .+|+.|+||++||++++
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             EEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            468899999999999999999999999999889999999 68999999999998763

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.1e-12  Score=90.39  Aligned_cols=57  Identities=28%  Similarity=0.602  Sum_probs=52.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC--Ceeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|+..  |+.|+||++||+.+..
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~   64 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP   64 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCS
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            46899999999999999999999999999999999999974  8999999999998754

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=4.7e-12  Score=90.61  Aligned_cols=59  Identities=25%  Similarity=0.521  Sum_probs=52.5

Q ss_pred             chhhhhhhcccCCCCCCCceeccCCCEEEEEecCCC-cceeeee--CCeeeeeecccccccc
Q psy10189        152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ-HWWHGEI--GARKGLFPATYILNME  210 (376)
Q Consensus       152 ~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~-~w~~~~~--~~~~G~~P~~~v~~~~  210 (376)
                      +....++|+|+|.++.+++|+|++||+|.|+.+.++ +||.++.  +|+.|+||++||++..
T Consensus        15 ~~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           15 APGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             CTTCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CCCCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            344679999999999999999999999999998776 9999985  6999999999998754

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=3.3e-12  Score=92.36  Aligned_cols=59  Identities=36%  Similarity=0.799  Sum_probs=53.7

Q ss_pred             chhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeecccccccc
Q psy10189        152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNME  210 (376)
Q Consensus       152 ~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~  210 (376)
                      +....++|+|+|.++.+++|+|++||+|.|+++.+++||.++ .+|+.|+||++||++..
T Consensus        17 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~   76 (85)
T 2yuq_A           17 PEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS   76 (85)
T ss_dssp             SSSCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECC
T ss_pred             CCCeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEcc
Confidence            344679999999999999999999999999999999999997 58999999999999864

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.29  E-value=1.6e-12  Score=87.49  Aligned_cols=55  Identities=24%  Similarity=0.573  Sum_probs=50.7

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.++.+++|+|++||++.|+.+ +++||.++ .+|+.|+||++||+++..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            57899999999999999999999999999 89999997 589999999999998754

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.29  E-value=2.6e-12  Score=89.10  Aligned_cols=56  Identities=23%  Similarity=0.570  Sum_probs=51.8

Q ss_pred             hhhhcccCC-CCCCCceeccCCCEEEEEecCCCcceeeeeC--Ceeeeeeccccccccc
Q psy10189        156 LVQALYDFT-PQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~-~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|. ++.+++|+|++||++.|+++.+++||.|+..  |+.|+||++||+++..
T Consensus         4 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   62 (69)
T 1ruw_A            4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD   62 (69)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCS
T ss_pred             EEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            578999995 9999999999999999999989999999986  9999999999998754

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.29  E-value=1.9e-12  Score=89.21  Aligned_cols=56  Identities=30%  Similarity=0.534  Sum_probs=50.9

Q ss_pred             hhhhhcccCCC-CCCCceeccCCCEEEEEec-CCCcceeeeeC--Ceeeeeecccccccc
Q psy10189        155 CLVQALYDFTP-QEPGELEFRRGDVITVTDR-SDQHWWHGEIG--ARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~-~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~--~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.| +.+++|+|++||+|.|+.+ .+++||.|+..  |+.|+||++||++++
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            46899999996 8999999999999999986 78999999986  999999999998763

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.29  E-value=1.1e-12  Score=95.98  Aligned_cols=58  Identities=29%  Similarity=0.774  Sum_probs=54.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+|+.|+||++||+++..+
T Consensus        19 ~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~   76 (92)
T 2o2o_A           19 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGE   76 (92)
T ss_dssp             CEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSC
T ss_pred             eEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCC
Confidence            4689999999999999999999999999998999999999999999999999998653

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.5e-12  Score=89.49  Aligned_cols=58  Identities=31%  Similarity=0.662  Sum_probs=53.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.  +++.|+||++||+++..+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             cEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            5689999999999999999999999999999999999997  489999999999987653

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.29  E-value=1.8e-12  Score=89.91  Aligned_cols=57  Identities=33%  Similarity=0.765  Sum_probs=52.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCee-eeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK-GLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~-G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+..+.. |+||++||+++..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~   65 (69)
T 2eqi_A            8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG   65 (69)
T ss_dssp             CEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCS
T ss_pred             cEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECcc
Confidence            46899999999999999999999999999989999999987666 9999999998754

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.29  E-value=2.1e-12  Score=95.14  Aligned_cols=57  Identities=30%  Similarity=0.655  Sum_probs=53.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC--CCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++..+||+|++||+|.|+.+.  +++||.|+++|+.|+||.+||+.+..
T Consensus         6 ~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   64 (93)
T 1uff_A            6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS   64 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCS
T ss_pred             EEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCC
Confidence            4689999999999999999999999999886  78999999999999999999998864

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.29  E-value=1.9e-12  Score=90.03  Aligned_cols=57  Identities=26%  Similarity=0.664  Sum_probs=53.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+  .+++.|+||++||+++..
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG   66 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCC
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcC
Confidence            468999999999999999999999999999889999999  689999999999998754

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=3.9e-12  Score=93.08  Aligned_cols=58  Identities=31%  Similarity=0.657  Sum_probs=53.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC--CeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG--ARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.|+..  |+.|+||++||+.+..+
T Consensus        18 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~   77 (90)
T 2yup_A           18 GEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREP   77 (90)
T ss_dssp             EEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECC
T ss_pred             eEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCC
Confidence            46899999999999999999999999999989999999986  99999999999988654

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.28  E-value=3.3e-12  Score=88.20  Aligned_cols=57  Identities=28%  Similarity=0.619  Sum_probs=52.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+. ++||.++ .+|+.|+||++||+++..+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            8 LKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             eEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            4689999999999999999999999999984 8999999 7999999999999987653

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3.3e-12  Score=92.98  Aligned_cols=57  Identities=21%  Similarity=0.603  Sum_probs=53.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+++||.++.+++.|+||++||+++..
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (88)
T 2cub_A           18 MPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGD   74 (88)
T ss_dssp             EEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCC
Confidence            568999999999999999999999999999999999999999999999999998754

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.28  E-value=3.6e-12  Score=88.01  Aligned_cols=56  Identities=27%  Similarity=0.531  Sum_probs=51.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++. ++||.++. +|+.|+||++||+++..
T Consensus         9 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            9 KWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             EEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            5689999999999999999999999999986 89999975 79999999999998754

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.27  E-value=3.2e-12  Score=89.31  Aligned_cols=56  Identities=21%  Similarity=0.563  Sum_probs=51.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+ +++||.|+. +|+.|+||++||+++..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (72)
T 2jw4_A            8 VVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNS   64 (72)
T ss_dssp             EEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCC
T ss_pred             eEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCC
Confidence            568999999999999999999999999997 579999995 89999999999998754

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.27  E-value=2.8e-12  Score=88.34  Aligned_cols=55  Identities=27%  Similarity=0.543  Sum_probs=49.2

Q ss_pred             hhhhhcccCCCCCCCc-eeccCCCEEEEEec-CCCcceeee--eCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGE-LEFRRGDVITVTDR-SDQHWWHGE--IGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~e-L~~~~g~~i~v~~~-~~~~w~~~~--~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.+++ |+|++||+|.|+.. .+++||.|+  .+|+.|+||++||+++
T Consensus         8 ~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             eEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            4689999999998777 99999999999964 678999999  6899999999999875

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.27  E-value=3.4e-12  Score=107.47  Aligned_cols=56  Identities=20%  Similarity=0.396  Sum_probs=51.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      .|+|+|||+++.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+....
T Consensus        83 ~~~al~dy~a~~~~eLs~~~Gd~i~vl~~-~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           83 PYVAIKAYTAVEGDEVSLLEGEAVEVIHK-LLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             eeeeccccCCCCCCcccccCCCEEEEEEe-cCCCeEEEEECCCEEEEehHHeEECCC
Confidence            47999999999999999999999999997 567899999999999999999997654

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=4.5e-12  Score=93.83  Aligned_cols=57  Identities=26%  Similarity=0.587  Sum_probs=52.8

Q ss_pred             hhhhhcccCCCCC------CCceeccCCCEEEEE-ecCCCcceeeee-CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQE------PGELEFRRGDVITVT-DRSDQHWWHGEI-GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~------~~eL~~~~g~~i~v~-~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.      ++||+|++||+|.|+ ...+++||.|++ +|+.|+||++||+++..
T Consensus        18 ~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~   82 (96)
T 1wie_A           18 HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQD   82 (96)
T ss_dssp             EEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCS
T ss_pred             cEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCC
Confidence            5689999999988      999999999999999 778899999998 89999999999998765

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.26  E-value=2.8e-12  Score=91.01  Aligned_cols=57  Identities=28%  Similarity=0.605  Sum_probs=52.7

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC---Cee------eeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG---ARK------GLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~---~~~------G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+..   |+.      |+||++||+++.+
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A            8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             EEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCC
T ss_pred             CEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCC
Confidence            57899999999999999999999999999999999999975   888      9999999998754

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4.3e-12  Score=89.41  Aligned_cols=56  Identities=21%  Similarity=0.472  Sum_probs=51.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee----CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI----GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~----~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++ +++|+|++||+|.|+++.+++||.++.    +++.|+||++||+++++
T Consensus        11 ~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A           11 DVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             EEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             eEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            468999999999 999999999999999999999999997    46899999999998764

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=8.1e-12  Score=92.67  Aligned_cols=58  Identities=31%  Similarity=0.630  Sum_probs=52.0

Q ss_pred             hhhhhcccCCCC--------CCCceeccCCCEEEEEec-CCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQ--------EPGELEFRRGDVITVTDR-SDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~--------~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++        ..++|+|++||+|.|+.+ .+++||.|+.+|+.|+||++||+++..+
T Consensus        18 ~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           18 RIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             EEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCC
T ss_pred             eEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            468999999999        789999999999999965 4577999999999999999999998654

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4.8e-12  Score=89.91  Aligned_cols=57  Identities=19%  Similarity=0.474  Sum_probs=52.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC-CcceeeeeC-Ceeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIG-ARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+ ++||.|+.. |+.|+||++||+.+..
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   72 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTS   72 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCC
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCC
Confidence            46899999999999999999999999999975 899999986 9999999999998754

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=6.3e-12  Score=86.76  Aligned_cols=56  Identities=25%  Similarity=0.562  Sum_probs=51.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++. ++||.++. +|+.|+||++||+++..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECCC
Confidence            4689999999999999999999999999985 89999984 89999999999998754

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.25  E-value=4.2e-12  Score=89.24  Aligned_cols=56  Identities=32%  Similarity=0.740  Sum_probs=52.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++ +++||.|+.+|+.|+||++||+.+..
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (74)
T 1j3t_A           11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCC
T ss_pred             eEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCC
Confidence            468999999999999999999999999998 47899999999999999999998765

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.25  E-value=1.3e-12  Score=91.16  Aligned_cols=58  Identities=33%  Similarity=0.823  Sum_probs=53.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeee-eeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKG-LFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G-~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+.+++||.|+.+++.| +||++||+++..+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCC
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCc
Confidence            568999999999999999999999999999899999999988887 9999999987653

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.25  E-value=8.8e-12  Score=91.46  Aligned_cols=58  Identities=31%  Similarity=0.742  Sum_probs=53.2

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEec--CCCcceeee-eCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDR--SDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.++||+|++||+|.|+.+  .+++||.|+ .+|+.|+||.+||+++..
T Consensus        17 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   77 (91)
T 1wx6_A           17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   77 (91)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEE
T ss_pred             cEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCC
Confidence            3578999999999999999999999999998  688999998 689999999999998764

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.24  E-value=6.4e-12  Score=89.13  Aligned_cols=57  Identities=28%  Similarity=0.609  Sum_probs=52.6

Q ss_pred             hhhhhcccCCCC-CCCceeccCCCEEEEEecC-CCcceeee-eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQ-EPGELEFRRGDVITVTDRS-DQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~-~~~eL~~~~g~~i~v~~~~-~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++ .+++|+|++||+|.|+.+. +++||.|+ .+|+.|+||++||+++..
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~   69 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPN   69 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCC
Confidence            468999999999 9999999999999999985 79999999 789999999999998864

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.24  E-value=4.7e-12  Score=90.57  Aligned_cols=56  Identities=30%  Similarity=0.777  Sum_probs=51.4

Q ss_pred             hhhhhcccCCCCCCC-ceeccCCCEEEEEecCCC-----cceeeee-CCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPG-ELEFRRGDVITVTDRSDQ-----HWWHGEI-GARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~-eL~~~~g~~i~v~~~~~~-----~w~~~~~-~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.++ +|+|++||+|.|+.+.+.     +||.|+. +|+.|+||++||+.+.
T Consensus        15 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   77 (80)
T 2v1r_A           15 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK   77 (80)
T ss_dssp             EEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC-
T ss_pred             EEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcC
Confidence            578999999999999 999999999999998776     9999998 8999999999999864

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=7.8e-12  Score=86.90  Aligned_cols=57  Identities=16%  Similarity=0.396  Sum_probs=51.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC-CcceeeeeC-Ceeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIG-ARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|++..+ ++||.++.. |+.|+||++||+.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            8 GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            46899999999999999999999999999864 569999986 9999999999998754

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=9.1e-12  Score=88.62  Aligned_cols=56  Identities=20%  Similarity=0.484  Sum_probs=50.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|++ .+++||.++.  +|+.|+||++||+++..
T Consensus        18 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           18 DFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            57899999999999999999999999998 5789999986  58999999999998754

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.23  E-value=8.2e-12  Score=89.26  Aligned_cols=57  Identities=23%  Similarity=0.550  Sum_probs=52.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC-----Ceeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-----ARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-----~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+++||.|+..     ++.|+||++||+++..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~   69 (80)
T 1ue9_A            8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCS
T ss_pred             eEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCC
Confidence            46899999999999999999999999999988999999975     4899999999998754

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.23  E-value=1.5e-12  Score=92.29  Aligned_cols=56  Identities=34%  Similarity=0.713  Sum_probs=51.8

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeeccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNM  209 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~  209 (376)
                      ...++|+|+|.++..++|+|++||+|.|+++.+++||.|+. +|+.|+||++||++.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEEc
Confidence            45799999999999999999999999999999899999995 899999999999863

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.22  E-value=5.9e-12  Score=94.68  Aligned_cols=57  Identities=26%  Similarity=0.533  Sum_probs=50.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec-CCCc--ceeeeeC--------Ceeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR-SDQH--WWHGEIG--------ARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~--w~~~~~~--------~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+ .+.+  ||.|++.        |+.||||+|||+++..
T Consensus        23 ~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~   90 (108)
T 1i1j_A           23 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   90 (108)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             eEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccc
Confidence            468999999999999999999999999988 3444  9999986        8999999999998753

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.21  E-value=1e-11  Score=91.29  Aligned_cols=58  Identities=29%  Similarity=0.732  Sum_probs=53.1

Q ss_pred             hhhhhhcccCCCCCCC-ceeccCCCEEEEEecCCC-----cceeeee-CCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPG-ELEFRRGDVITVTDRSDQ-----HWWHGEI-GARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~-eL~~~~g~~i~v~~~~~~-----~w~~~~~-~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.++ +|+|++||+|.|+.+.+.     +||.|+. +|+.|+||++||+.+..
T Consensus        14 ~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~   78 (92)
T 1jqq_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (92)
T ss_dssp             CEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCC
T ss_pred             CEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCC
Confidence            3578999999999999 999999999999998776     9999998 89999999999998754

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.21  E-value=1.6e-11  Score=89.04  Aligned_cols=57  Identities=28%  Similarity=0.738  Sum_probs=52.3

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.+++|+|++||+|.|+++. ++||.|+.  +|+.|+||++||+++.+
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            35789999999999999999999999999988 69999998  89999999999998743

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.20  E-value=9.5e-12  Score=111.61  Aligned_cols=55  Identities=38%  Similarity=0.860  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +++|+|||.|++++||+|++||+|.|+++ .+++||.|+.+|+.||||+|||+...
T Consensus         4 ~~~a~~~~~~~~~~el~~~~gd~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~   58 (283)
T 3jv3_A            4 QVIGMYDYTAQNDDELAFSKGQIINVLNK-EDPDWWKGEVSGQVGLFPSNYVKLTT   58 (283)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-CSTTEEEEEETTEEEEEEGGGEEEGG
T ss_pred             EEEEccccCCCCCCcCCCCCCCEEEEEec-CCCCEEEEEECCCCCcCCCccccccC
Confidence            68999999999999999999999999997 56789999999999999999998643

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.20  E-value=3.6e-12  Score=95.79  Aligned_cols=57  Identities=21%  Similarity=0.419  Sum_probs=51.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCee---eeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARK---GLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~---G~~P~~~v~~~~~  211 (376)
                      ..++|+|||.++.++||+|++||+|.|+.+.+++||.|+..|+.   |+||+|||+.+..
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCS
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecC
Confidence            45899999999999999999999999999889999999987666   9999999998754

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=9.9e-12  Score=91.73  Aligned_cols=57  Identities=32%  Similarity=0.615  Sum_probs=52.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec--CC--Ccceeee--eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR--SD--QHWWHGE--IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~--~~--~~w~~~~--~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+  .+  ++||.|+  .+|+.|+||++||+++..
T Consensus        17 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           17 ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             EEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             eEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            578999999999999999999999999987  34  8999999  789999999999998764

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.3e-11  Score=85.74  Aligned_cols=56  Identities=21%  Similarity=0.694  Sum_probs=49.6

Q ss_pred             hhhhhcccCCCCCCC--ceeccCCCEEEEEecCCCcceeee-eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPG--ELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~--eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++  +|+|++||+|.|+.. +++||.|+ .+|+.|+||++||+++..
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDG   64 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCC
Confidence            468899999998765  999999999999986 78999997 589999999999998754

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=89.53  Aligned_cols=53  Identities=26%  Similarity=0.644  Sum_probs=49.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~  208 (376)
                      ..++|+|+|.++.++||+|.+||+|.|++. +++||.|+ .+|+.|+||++||++
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            568999999999999999999999999997 67999999 589999999999975

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.18  E-value=1.7e-11  Score=82.93  Aligned_cols=39  Identities=36%  Similarity=0.940  Sum_probs=36.8

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI  194 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~  194 (376)
                      .++|+|+|.++.++||+|++||+|.|+++.+++||.|++
T Consensus        23 ~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             EEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            578999999999999999999999999999999999975

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.17  E-value=1.9e-11  Score=82.86  Aligned_cols=44  Identities=23%  Similarity=0.749  Sum_probs=39.5

Q ss_pred             CCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189         13 AEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus        13 ~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+...
T Consensus         2 ~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   45 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNS-TNKDWWKVEVNDRQGFVPAAYVKKLD   45 (63)
T ss_dssp             CCCCCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEECS
T ss_pred             CccccCCCCCCEEEEEEe-cCCCEEEEEECCcEEEEeHHHEEEcC
Confidence            578999999999999997 55789999999999999999998653

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.15  E-value=2.1e-11  Score=85.75  Aligned_cols=56  Identities=29%  Similarity=0.618  Sum_probs=50.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee---CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|.+||+|.|+++. ++||.|+.   +|+.|+||++||+..+.
T Consensus        12 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           12 KYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             SCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             eEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            5689999999999999999999999999985 78999987   79999999999987643

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.14  E-value=3.6e-11  Score=95.43  Aligned_cols=57  Identities=35%  Similarity=0.761  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+. +++||.|+.+|+.|+||++||+++..
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            6 GTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             eEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            4689999999999999999999999999984 88999999999999999999998754

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.14  E-value=1.8e-11  Score=89.36  Aligned_cols=57  Identities=33%  Similarity=0.584  Sum_probs=49.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec-------------CCC--cceeeee--CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR-------------SDQ--HWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~-------------~~~--~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+..             ..+  +||.|+.  +|+.|+||++||+.+..
T Consensus        12 ~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             cEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            578999999999999999999999999842             234  8999986  69999999999998753

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.14  E-value=1.6e-11  Score=90.34  Aligned_cols=57  Identities=26%  Similarity=0.609  Sum_probs=52.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC----CcceeeeeCCe-eeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD----QHWWHGEIGAR-KGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~----~~w~~~~~~~~-~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+    .+||.|++.++ .|+||++||+++..
T Consensus        18 ~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~   79 (93)
T 1wxu_A           18 VVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGK   79 (93)
T ss_dssp             BCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCC
T ss_pred             EEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCC
Confidence            56899999999999999999999999999877    59999998777 99999999998754

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.14  E-value=2.4e-11  Score=101.18  Aligned_cols=54  Identities=26%  Similarity=0.584  Sum_probs=48.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc---CCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~vP~nyve~~~   57 (376)
                      .++|+|+|.|+.++||+|++||+|.|+++. + +||.|+.   +|+.|+||+|||++..
T Consensus        19 ~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~-~-~W~~g~~~~~~g~~G~fP~nyV~~~~   75 (184)
T 3a98_A           19 HGVAIYNFQGSGAPQLSLQIGDVVRIQETC-G-DWYRGYLIKHKMLQGIFPKSFIHIKE   75 (184)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEE-T-TEEEEEETTEEEEEEEEEGGGEEEEC
T ss_pred             EEEEeeeeCCCCCCCCCcCCCCEEEEEecC-C-CEEEEEEecCCCceEEECcceEEEec
Confidence            589999999999999999999999999974 3 4999996   7899999999998654

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.13  E-value=2.4e-11  Score=92.64  Aligned_cols=56  Identities=30%  Similarity=0.561  Sum_probs=50.7

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEe-----cCCCcceeeee----------CCeeeeeeccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTD-----RSDQHWWHGEI----------GARKGLFPATYILNM  209 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~-----~~~~~w~~~~~----------~~~~G~~P~~~v~~~  209 (376)
                      ...++|+|+|.++.++||+|++||+|.|+.     ..+++||.|+.          +|+.|+||++||+++
T Consensus        44 ~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             ceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            356899999999999999999999999999     78899999975          388999999999875

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.13  E-value=3.4e-11  Score=115.58  Aligned_cols=62  Identities=16%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccc----ccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEM----KNHDWYYGR   64 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~----~~~~w~~g~   64 (376)
                      .++|+|+|+|++++||+|++||+|.|++. .+++||.|+  .+|+.|+||+|||+.    ...+||.+.
T Consensus       444 ~~~aly~y~a~~~dELs~~~GD~i~v~~~-~~~gW~~G~~~~~g~~G~fPsnyV~~~~~~~~~p~y~~~  511 (526)
T 2de0_X          444 NQIAIYAHQPRTADEIPMEPGDIIGVAGN-HWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEA  511 (526)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEE-CSSSEEEEEETTTTEEEEEEGGGEEECCCEECCCCCCC-
T ss_pred             ceEEeecCCCCCCCcCCcCCCCEEEEccc-cCCCeeEEEeCCCCCEEEECchheeEcccCCCCCChhhh
Confidence            58999999999999999999999999986 667999999  789999999999985    346788653

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.12  E-value=4.2e-11  Score=92.01  Aligned_cols=56  Identities=27%  Similarity=0.583  Sum_probs=51.0

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee---CCeeeeeecccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYILNME  210 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~~~~G~~P~~~v~~~~  210 (376)
                      ...++|+|+|.++.++||+|++||+|.|+++. ++||.|++   +|+.|+||++||+.++
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            35789999999999999999999999999985 69999998   8999999999998753

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=99.11  E-value=2e-10  Score=93.87  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=67.6

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEe-CCeeEEEEEEEcCCCcEEEeccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKC-SDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~-~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~  312 (376)
                      ....|+|+ +++..+||++|... +|.||||+|+. .+.++|+++. ++.+.|+.|...+ ..|.+++..|.+|.|||.+
T Consensus        11 ~I~HP~F~-n~s~~qAe~~L~~~-~G~~liRPSsk-~~~ltit~Kv~d~~~~Hi~I~E~~-k~l~ig~~~fedLDElI~~   86 (178)
T 2xp1_A           11 FYKHPLFK-NFNVTESENYLRSS-TDDFLIRKGSR-HGYCVLVIKFASDVFVHMKIEEHS-EHYTCSNKHFEDIDEVISV   86 (178)
T ss_dssp             GGGSTTEE-CCCHHHHHHHHHHS-SCCEEEEECSS-TTEEEEEEEEETTEEEEEEEEECS-SCEEETTEEESSHHHHHHH
T ss_pred             eccCCCcC-CCCHHHHHHHHhcC-CCCEEEeecCC-CCcEEEEEEECCCcEEEEEEEECC-CEEEECCcEECCHHHHHHH
Confidence            45679998 79999999999984 59999999975 7789999995 8889999997644 4688888899999999999


Q ss_pred             Hhh
Q psy10189        313 HRT  315 (376)
Q Consensus       313 y~~  315 (376)
                      |..
T Consensus        87 yv~   89 (178)
T 2xp1_A           87 YVR   89 (178)
T ss_dssp             THH
T ss_pred             HHH
Confidence            976

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.10  E-value=1.9e-11  Score=87.98  Aligned_cols=57  Identities=26%  Similarity=0.588  Sum_probs=49.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEec---------------CCCcceeeee--CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDR---------------SDQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~---------------~~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.+++|+|++||+|.|+.+               .+.+||.|+.  +|+.|+||++||+.+..
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            6 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             cEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            568999999999999999999999999954               2348999964  69999999999998643

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.09  E-value=9.4e-11  Score=83.21  Aligned_cols=55  Identities=25%  Similarity=0.627  Sum_probs=47.5

Q ss_pred             hhhhhcccCCCCC---CCceeccCCCEEEEEecC-CCcceeee--eCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQE---PGELEFRRGDVITVTDRS-DQHWWHGE--IGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~---~~eL~~~~g~~i~v~~~~-~~~w~~~~--~~~~~G~~P~~~v~~~  209 (376)
                      ..+.++|+|.++.   ++||+|++||+|.|+++. +++||.|+  .+|+.|+||++||+++
T Consensus        16 ~~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           16 EVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             EECSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             EEEEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            4566778887753   689999999999999994 89999999  4899999999999875

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.09  E-value=7.6e-11  Score=81.84  Aligned_cols=54  Identities=19%  Similarity=0.391  Sum_probs=45.9

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEec-CCCcceeee--eCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGE--IGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~--~~~~~G~~P~~~v~~~  209 (376)
                      .+.+++++.++..+||+|++||+|.|+++ .+.+||.|+  .+|+.|+||++||++.
T Consensus        12 ~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C           12 EYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             CBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            35556666666777999999999999998 688999995  5899999999999875

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.07  E-value=7.2e-11  Score=90.94  Aligned_cols=56  Identities=21%  Similarity=0.512  Sum_probs=51.4

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee---CCeeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.++.++||+|++||+|.|+.+.+++||.|+.   .|+.|+||++||+.++.
T Consensus         5 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~   63 (120)
T 2kym_A            5 FAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDL   63 (120)
T ss_dssp             EEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECS
T ss_pred             EEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccC
Confidence            578999999999999999999999999999999999985   57899999999998754

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.05  E-value=1.2e-10  Score=111.98  Aligned_cols=55  Identities=20%  Similarity=0.527  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||.|++++||+|++||+|.|++. .+++||.|+.+|+.||||+|||++..
T Consensus        32 ~~~al~~~~~~~~~eL~~~~gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~   86 (466)
T 2pz1_A           32 CAEALWDHVTMDDQELGFKAGDVIEVMDA-TNREWWWGRVADGEGWFPASFVRLRV   86 (466)
T ss_dssp             EEEESSCBCCCCTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEECS
T ss_pred             EEEEccccCCCCCCcCCCCCCCEEEEEEe-cCCCEEEEEECCcEEEEehhHeeecc
Confidence            58999999999999999999999999997 56789999999999999999998654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.02  E-value=1.5e-10  Score=108.11  Aligned_cols=87  Identities=29%  Similarity=0.431  Sum_probs=63.7

Q ss_pred             eccccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecch
Q psy10189         48 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSL  127 (376)
Q Consensus        48 vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl  127 (376)
                      +|.+.-.+...+||||.|+|.+|+.+|.  .+|+||||.|++.+ .|+||+..++.++|++|.... +.|.+.+..|+++
T Consensus         3 ~~~~~~~l~~~~wyhg~i~r~~a~~lL~--~~G~flvR~s~~~~-~~~lsv~~~~~~~h~~i~~~~-~~~~~~~~~F~sl   78 (377)
T 3cbl_A            3 IPEVQKPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLD-NLYRLEGEGFPSI   78 (377)
T ss_dssp             CCGGGSCGGGCTTBCTTCCHHHHHHHCC--STTEEEEEECC--C-CEEEEC-----CCEEEC-----CCCCC----CCSH
T ss_pred             ccccccccccCCccCCCCCHHHHHHHHh--cCCCEEEEEeCCCC-cEEEEEEECCCccchhhcccc-ceEEecceeccch
Confidence            5666666788999999999999999997  68999999998877 999999999999999998653 4666666679999


Q ss_pred             hhhHhhhhccc
Q psy10189        128 NELVEYHRTAS  138 (376)
Q Consensus       128 ~~li~~~~~~~  138 (376)
                      .++++||...+
T Consensus        79 ~~LI~~y~~~~   89 (377)
T 3cbl_A           79 PLLIDHLLSTQ   89 (377)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHhhcc
Confidence            99999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	376
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	5e-35
d1r1qa_	97	d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA	5e-35
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	6e-32
d1jyra_	96	d.93.1.1 (A:) Growth factor receptor-bound protein	6e-32
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	4e-26
d1rpya_	86	d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus nor	4e-26
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	2e-24
d1fu6a_	111	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	2e-24
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	2e-23
d1mila_	104	d.93.1.1 (A:) Shc adaptor protein {Human (Homo sap	2e-23
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	5e-23
d1k9aa2	101	d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (	5e-23
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	7e-23
d2shpa2	109	d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Huma	7e-23
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	8e-23
d1opka2	101	d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (M	8e-23
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	1e-22
d2izva2	112	d.93.1.1 (A:274-385) Suppressor of cytokine signal	1e-22
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	2e-22
d1jwoa_	97	d.93.1.1 (A:) Csk homologous kinase Chk {Human (Ho	2e-22
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	1e-21
d2c9wa2	103	d.93.1.1 (A:32-134) Suppressor of cytokine signali	1e-21
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	1e-21
d1nrva_	105	d.93.1.1 (A:) Growth factor receptor-bound protein	1e-21
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	1e-21
d2eyva1	109	d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo	1e-21
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	1e-21
d2qmsa1	113	d.93.1.1 (A:420-532) Growth factor receptor-bound	1e-21
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	1e-21
d1rjaa_	100	d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tu	1e-21
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	1e-21
d1i3za_	103	d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat	1e-21
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	2e-21
d1d4ta_	104	d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sap	2e-21
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	3e-21
d1qada_	107	d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-a	3e-21
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	3e-21
d1lkka_	105	d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo	3e-21
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	3e-21
d1xa6a2	141	d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal dom	3e-21
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	8e-21
d2oq1a2	124	d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-7	8e-21
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	9e-21
d2cs0a1	106	d.93.1.1 (A:8-113) Hematopoietic SH2 domain contai	9e-21
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	2e-20
d1blja_	114	d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mou	2e-20
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	2e-20
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	8e-16
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	3e-20
d2shpa3	108	d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Hu	3e-20
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	3e-20
d1o48a_	106	d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo s	3e-20
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	1e-19
d2oq1a1	130	d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70	3e-19
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	1e-19
d1qcfa2	103	d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {H	1e-19
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-19
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-15
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	0.001
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	8e-19
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	7e-15
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	8e-04
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-18
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	7e-14
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	6e-04
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	1e-18
d1g83a2	104	d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (H	1e-18
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	2e-18
d2fcia1	105	d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (B	2e-18
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	2e-18
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	1e-14
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	0.002
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	3e-18
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-14
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	0.001
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	7e-18
d1bg1a3	141	d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus)	7e-18
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-18
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-15
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-04
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	0.001
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	1e-17
d1a81a1	129	d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Hom	1e-17
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	1e-17
d1uura3	131	d.93.1.1 (A:577-707) STAT homologue {Dictyostelium	1e-17
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	1e-17
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	1e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	0.004
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	2e-17
d1a81a2	125	d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (H	2e-17
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-17
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	4e-14
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	0.004
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-17
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-12
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	5e-04
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-16
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-15
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-16
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	3e-14
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	0.001
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-16
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-12
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-16
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-14
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	0.002
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-16
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-14
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	2e-16
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	4e-14
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	0.001
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	2e-16
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	1e-14
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	0.002
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-16
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-13
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	0.001
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	3e-16
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	6e-13
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	5e-16
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	2e-14
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	0.003
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	6e-16
d1luia_	108	d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mou	6e-16
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	7e-16
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-13
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	0.004
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	9e-16
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	4e-10
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	1e-15
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	3e-13
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	1e-15
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-14
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	4e-04
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	1e-15
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	6e-15
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	1e-15
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-13
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	2e-15
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	8e-14
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	0.002
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	2e-15
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	3e-15
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	8e-15
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	4e-14
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	0.001
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	3e-14
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	5e-13
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	0.003
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-14
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-10
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	3e-14
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	2e-11
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-14
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-12
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	5e-14
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	9e-11
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	2e-13
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	5e-11
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	0.001
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	5e-13
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-10
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	7e-13
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-07
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	1e-12
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	2e-10
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	2e-12
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-09
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-12
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	7e-08
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-04
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	3e-12
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	5e-10
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	4e-12
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	1e-08
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	1e-11
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	2e-09
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	2e-11
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	3e-06
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	2e-10
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	7e-07
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	6e-04
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	5e-10
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	2e-07
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-09
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	3e-09
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	1e-08
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	4e-05
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	3e-07
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	0.003
d1bf5a3	142	d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens)	4e-05
d1bf5a3	142	d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens)	4e-05

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (307), Expect = 5e-35
 Identities = 51/97 (52%), Positives = 72/97 (74%)

Query: 53  IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 112
           I+++  +W++  ++R  AE LL  K  G F+IR S+SSPGDFS+SV+  D VQHFKV+RD
Sbjct: 1   IDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRD 60

Query: 113 SSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 149
           + G +FLW  KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 61  TKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 97

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (307), Expect = 5e-35
 Identities = 51/97 (52%), Positives = 72/97 (74%)

Query: 232 IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD 291
           I+++  +W++  ++R  AE LL  K  G F+IR S+SSPGDFS+SV+  D VQHFKV+RD
Sbjct: 1   IDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRD 60

Query: 292 SSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRD 328
           + G +FLW  KF SLN+LV+Y+RT S+S+ + V LRD
Sbjct: 61  TKGNYFLWTEKFPSLNKLVDYYRTTSISKQKQVFLRD 97

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 6e-32
 Identities = 64/94 (68%), Positives = 79/94 (84%), Gaps = 1/94 (1%)

Query: 58  HDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 116
             W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK
Sbjct: 3   MAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGK 62

Query: 117 FFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 150
           +FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 63  YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 6e-32
 Identities = 64/94 (68%), Positives = 79/94 (84%), Gaps = 1/94 (1%)

Query: 237 HDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 295
             W++G+I RA AE +LS  +H+GAFLIR SES+PGDFSLSVK  + VQHFKVLRD +GK
Sbjct: 3   MAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGK 62

Query: 296 FFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM 329
           +FLWVVKFNSLNELV+YHR+ SVSR+Q + LRD+
Sbjct: 63  YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDI 96

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.1 bits (244), Expect = 4e-26
 Identities = 20/86 (23%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 54  EMKNHDWYYGRITRADAERLLSN---KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 110
           E+ ++ W++G ++R  A +L+     +  G F+IR SE+ PG+  L+       +H ++ 
Sbjct: 1   ELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLS 60

Query: 111 RDSSGKFFLWVVKFNSLNELVEYHRT 136
            +  G+  +  + F S+ +++ +  T
Sbjct: 61  LNGHGQCHVQHLWFQSVFDMLRHFHT 86

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.1 bits (244), Expect = 4e-26
 Identities = 20/86 (23%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 233 EMKNHDWYYGRITRADAERLLSN---KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVL 289
           E+ ++ W++G ++R  A +L+     +  G F+IR SE+ PG+  L+       +H ++ 
Sbjct: 1   ELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLS 60

Query: 290 RDSSGKFFLWVVKFNSLNELVEYHRT 315
            +  G+  +  + F S+ +++ +  T
Sbjct: 61  LNGHGQCHVQHLWFQSVFDMLRHFHT 86

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.7 bits (235), Expect = 2e-24
 Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 50  SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFK 108
           +N + +++ +WY+G I+R +    L +  +G FL+R + +   GD++L+++     +  K
Sbjct: 3   NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62

Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 148
           +        F   + FNS+ EL+ ++R  S+++      VKL 
Sbjct: 63  IFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLL 105

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 111

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.7 bits (235), Expect = 2e-24
 Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 229 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFK 287
           +N + +++ +WY+G I+R +    L +  +G FL+R + +   GD++L+++     +  K
Sbjct: 3   NNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIK 62

Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQD---VKLR 327
           +        F   + FNS+ EL+ ++R  S+++      VKL 
Sbjct: 63  IFHRDGKYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLL 105

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 2e-23
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           +++   W++G+++R +AE LL  +  G FL+R S ++PG + L+   S   +H  +  D 
Sbjct: 3   QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-VDP 59

Query: 114 SGKFFLWVVKFNSLNELVEYHRTAS---VSRSQDVKLRDMVPEE 154
            G       +F S++ L+ YH       +S   ++ L+  V  +
Sbjct: 60  EGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERK 103

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 2e-23
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           +++   W++G+++R +AE LL  +  G FL+R S ++PG + L+   S   +H  +  D 
Sbjct: 3   QLRGEPWFHGKLSRREAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-VDP 59

Query: 293 SGKFFLWVVKFNSLNELVEYHRTAS---VSRSQDVKLRDMVPEE 333
            G       +F S++ L+ YH       +S   ++ L+  V  +
Sbjct: 60  EGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERK 103

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 5e-23
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G+ITR  AERLL     G FL+R S + PGD++L V C   V+H++++  +S     
Sbjct: 6   WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSID 65

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 157
             V F +L +LVE++ T   +     +L      E  V
Sbjct: 66  EEVYFENLMQLVEHYTT--DADGLCTRLIKPKVMEGTV 101

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (224), Expect = 5e-23
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G+ITR  AERLL     G FL+R S + PGD++L V C   V+H++++  +S     
Sbjct: 6   WFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSID 65

Query: 299 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLV 336
             V F +L +LVE++ T   +     +L      E  V
Sbjct: 66  EEVYFENLMQLVEHYTT--DADGLCTRLIKPKVMEGTV 101

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (223), Expect = 7e-23
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 56  KNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           K+  W++  IT  +AE LL  +  +G+FL R S+S+PGD +LSV+ +  V H K+     
Sbjct: 1   KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGD 60

Query: 115 GKFFLWVVKFNSLNELVEYHRT 136
                   KF +L ELV+Y+  
Sbjct: 61  YYDLYGGEKFATLAELVQYYME 82

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (223), Expect = 7e-23
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 235 KNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           K+  W++  IT  +AE LL  +  +G+FL R S+S+PGD +LSV+ +  V H K+     
Sbjct: 1   KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGD 60

Query: 294 GKFFLWVVKFNSLNELVEYHRT 315
                   KF +L ELV+Y+  
Sbjct: 61  YYDLYGGEKFATLAELVQYYME 82

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (222), Expect = 8e-23
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 55  MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
           ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S 
Sbjct: 2   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61

Query: 115 GKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
           GK ++    +FN+L ELV +H T  V+      L    P+ 
Sbjct: 62  GKLYVSSESRFNTLAELVHHHST--VADGLITTLHYPAPKR 100

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (222), Expect = 8e-23
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
           ++ H WY+G ++R  AE LLS+   G+FL+R SESSPG  S+S++    V H+++   S 
Sbjct: 2   LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61

Query: 294 GKFFLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
           GK ++    +FN+L ELV +H T  V+      L    P+ 
Sbjct: 62  GKLYVSSESRFNTLAELVHHHST--VADGLITTLHYPAPKR 100

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 1e-22
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 47  LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 106
           L+P + +++ N+  Y+G + +  AE LL  K EG FL+R S      FS+S +      H
Sbjct: 1   LVP-DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLH 59

Query: 107 FKVLRDSSGKFFLW-----VVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
            ++ +  +  F        V     +  L+E+++  S     +  L   + 
Sbjct: 60  ARIEQW-NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLI 109

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 1e-22
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 226 LIPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQH 285
           L+P + +++ N+  Y+G + +  AE LL  K EG FL+R S      FS+S +      H
Sbjct: 1   LVP-DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLH 59

Query: 286 FKVLRDSSGKFFLW-----VVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 331
            ++ +  +  F        V     +  L+E+++  S     +  L   + 
Sbjct: 60  ARIEQW-NHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLI 109

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 2e-22
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
           W++G+I+  +A + L    +G FL+R S   PGD+ L V     V H++VL         
Sbjct: 6   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 65

Query: 120 WVVKFNSLNELVEYHRTAS 138
             V F +L ++VE++    
Sbjct: 66  EAVFFCNLMDMVEHYSKDK 84

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 2e-22
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
           W++G+I+  +A + L    +G FL+R S   PGD+ L V     V H++VL         
Sbjct: 6   WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTID 65

Query: 299 WVVKFNSLNELVEYHRTAS 317
             V F +L ++VE++    
Sbjct: 66  EAVFFCNLMDMVEHYSKDK 84

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 1e-21
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 48  IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 107
           +     E+    WY+G +T  +A+  L    EG FLIR S  S    ++SVK S G  + 
Sbjct: 5   LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNL 64

Query: 108 KVLR-------DSSGKFFLWVVKFNSLNELVEYHRTAS 138
           ++         DS       + +F+S+  L++Y+    
Sbjct: 65  RIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMC 102

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 1e-21
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 227 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHF 286
           +     E+    WY+G +T  +A+  L    EG FLIR S  S    ++SVK S G  + 
Sbjct: 5   LAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNL 64

Query: 287 KVLR-------DSSGKFFLWVVKFNSLNELVEYHRTAS 317
           ++         DS       + +F+S+  L++Y+    
Sbjct: 65  RIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMC 102

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 1e-21
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 57  NHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 114
              W++GRI+R ++ R++      +G FL+R S+S+P  F L++     +++F++L    
Sbjct: 4   TQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCED 63

Query: 115 GKFFLWVV-----KFNSLNELVEYHRTAS 138
                + +     KF+ L +LV++++   
Sbjct: 64  DGQTFFSLDDGNTKFSDLIQLVDFYQLNK 92

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 1e-21
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 236 NHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSS 293
              W++GRI+R ++ R++      +G FL+R S+S+P  F L++     +++F++L    
Sbjct: 4   TQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCED 63

Query: 294 GKFFLWVV-----KFNSLNELVEYHRTAS 317
                + +     KF+ L +LV++++   
Sbjct: 64  DGQTFFSLDDGNTKFSDLIQLVDFYQLNK 92

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 1e-21
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---- 115
           WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +          
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61

Query: 116 -------------KFFLWVVKFNSLNELVEYHRTASVS 140
                        +  +   +F+SL  L+E+++   + 
Sbjct: 62  PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLD 99

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (214), Expect = 1e-21
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 17/98 (17%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---- 294
           WY+GR++R +A  LL  +  G FL+R S +SPGD+ LSV  +  V H+ +          
Sbjct: 2   WYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVP 61

Query: 295 -------------KFFLWVVKFNSLNELVEYHRTASVS 319
                        +  +   +F+SL  L+E+++   + 
Sbjct: 62  PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLD 99

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 1e-21
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 58  HDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-DSS 114
             W++GRI+R +++RL+      +G FL+R S+ +P  F LS+     V+H+ +L  +  
Sbjct: 10  QLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEE 69

Query: 115 GKFFLWV----VKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
           G+ +  +     +F  L +LVE+H+           LR    
Sbjct: 70  GRLYFSMDDGQTRFTDLLQLVEFHQLN--RGILPCLLRHCCT 109

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 1e-21
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 237 HDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLR-DSS 293
             W++GRI+R +++RL+      +G FL+R S+ +P  F LS+     V+H+ +L  +  
Sbjct: 10  QLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEE 69

Query: 294 GKFFLWV----VKFNSLNELVEYHRTASVSRSQDVKLRDMVP 331
           G+ +  +     +F  L +LVE+H+           LR    
Sbjct: 70  GRLYFSMDDGQTRFTDLLQLVEFHQLN--RGILPCLLRHCCT 109

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 1e-21
 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 58  HDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
             W++G I+R++A R L       GAFLIRVSE    D+ LSV+ +  V+H+K+ R + G
Sbjct: 2   EPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGG 61

Query: 116 KFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
           +  L   V F SL ELV YHR  S+S    ++L     + 
Sbjct: 62  RLHLNEAVSFLSLPELVNYHRAQSLSH--GLRLAAPCRKH 99

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 1e-21
 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 237 HDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
             W++G I+R++A R L       GAFLIRVSE    D+ LSV+ +  V+H+K+ R + G
Sbjct: 2   EPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGG 61

Query: 295 KFFL-WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
           +  L   V F SL ELV YHR  S+S    ++L     + 
Sbjct: 62  RLHLNEAVSFLSLPELVNYHRAQSLSH--GLRLAAPCRKH 99

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (213), Expect = 1e-21
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 60  WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 118
           +Y+G +T+ + E LL     +G FLIR SES PG   L V     V  +++ R+  G + 
Sbjct: 5   YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 119 LWV------VKFNSLNELVEYHRTAS 138
           +          F +L ELV  +    
Sbjct: 65  IETDAHTPRTIFPNLQELVSKYGKPG 90

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (213), Expect = 1e-21
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 239 WYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFF 297
           +Y+G +T+ + E LL     +G FLIR SES PG   L V     V  +++ R+  G + 
Sbjct: 5   YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64

Query: 298 LWV------VKFNSLNELVEYHRTAS 317
           +          F +L ELV  +    
Sbjct: 65  IETDAHTPRTIFPNLQELVSKYGKPG 90

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 2e-21
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 55  MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 113
           M     Y+G+I+R   E+LL +   +G++L+R SES PG + L V     +  ++V +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 114 SGKFFLWV------VKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
           +G +            F  +  L+   +     +   + L+  V 
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQK--PDQGIVIPLQYPVE 103

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 2e-21
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 234 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS 292
           M     Y+G+I+R   E+LL +   +G++L+R SES PG + L V     +  ++V +  
Sbjct: 1   MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTE 60

Query: 293 SGKFFLWV------VKFNSLNELVEYHRTASVSRSQDVKLRDMVP 331
           +G +            F  +  L+   +     +   + L+  V 
Sbjct: 61  TGSWSAETAPGVHKRYFRKIKNLISAFQK--PDQGIVIPLQYPVE 103

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (211), Expect = 3e-21
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 57  NHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 116
              W  G   R  AE LL  K +G FL+R S S  G ++ SV     V+H  + + ++G 
Sbjct: 8   EKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGY 66

Query: 117 FFLWV-VKFNSLNELVEYHRTASVSRSQD---VKLR 148
            F      ++SL ELV +++  S+ +  D   V L 
Sbjct: 67  GFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLA 102

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 107

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (211), Expect = 3e-21
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 236 NHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGK 295
              W  G   R  AE LL  K +G FL+R S S  G ++ SV     V+H  + + ++G 
Sbjct: 8   EKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGY 66

Query: 296 FFLWV-VKFNSLNELVEYHRTASVSRSQD---VKLR 327
            F      ++SL ELV +++  S+ +  D   V L 
Sbjct: 67  GFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLA 102

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 3e-21
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 55  MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 107
           ++   W++  ++R DAER L       G+FLIR SES+ G FSLSV+  D      V+H+
Sbjct: 1   LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60

Query: 108 KVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
           K+    +G F++   + F  L+ELV ++  AS
Sbjct: 61  KIRNLDNGGFYISPRITFPGLHELVRHYTNAS 92

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 3e-21
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 286
           ++   W++  ++R DAER L       G+FLIR SES+ G FSLSV+  D      V+H+
Sbjct: 1   LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY 60

Query: 287 KVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 317
           K+    +G F++   + F  L+ELV ++  AS
Sbjct: 61  KIRNLDNGGFYISPRITFPGLHELVRHYTNAS 92

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 3e-21
 Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 60  WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 119
            ++G I+R  A+ LL    EGA+++R S+  PG ++L+++  +   ++++  D  GK F+
Sbjct: 37  EFHGIISREQADELLGGV-EGAYILRESQRQPGCYTLALRFGNQTLNYRLFHD--GKHFV 93

Query: 120 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQ 166
              +F S+++LV       ++   + K       +     +Y+    
Sbjct: 94  GEKRFESIHDLVTDG---LITLYIETKAA-EYISKMTTNPIYEHIGY 136

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 3e-21
 Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 239 WYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL 298
            ++G I+R  A+ LL    EGA+++R S+  PG ++L+++  +   ++++  D  GK F+
Sbjct: 37  EFHGIISREQADELLGGV-EGAYILRESQRQPGCYTLALRFGNQTLNYRLFHD--GKHFV 93

Query: 299 WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQ 345
              +F S+++LV       ++   + K       +     +Y+    
Sbjct: 94  GEKRFESIHDLVTDG---LITLYIETKAA-EYISKMTTNPIYEHIGY 136

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 8e-21
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 6/97 (6%)

Query: 45  EGLIPSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSD 102
           E LI +   E     WY+  +TR +AER L +  + +G FL+R  +   G ++LS+    
Sbjct: 18  EKLIATTAHE--RMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGK 74

Query: 103 GVQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
            V H+ + +D +GK+ +    KF++L +LVEY +  +
Sbjct: 75  TVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKA 111

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 8e-21
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 6/97 (6%)

Query: 224 EGLIPSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSD 281
           E LI +   E     WY+  +TR +AER L +  + +G FL+R  +   G ++LS+    
Sbjct: 18  EKLIATTAHE--RMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGK 74

Query: 282 GVQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 317
            V H+ + +D +GK+ +    KF++L +LVEY +  +
Sbjct: 75  TVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKA 111

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 9e-21
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 58  HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
            +W++G I+R DAE LL ++  G+FLIRVS S  G ++LS K      HF V     G F
Sbjct: 9   PEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTF 67

Query: 118 FL--WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
            +    V   SL+ LV +H+   +   +   L     ++
Sbjct: 68  MIPGEKVAHTSLDALVTFHQQKPIE-PRRELLTQPCRQK 105

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 9e-21
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 237 HDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
            +W++G I+R DAE LL ++  G+FLIRVS S  G ++LS K      HF V     G F
Sbjct: 9   PEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTF 67

Query: 297 FL--WVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
            +    V   SL+ LV +H+   +   +   L     ++
Sbjct: 68  MIPGEKVAHTSLDALVTFHQQKPIE-PRRELLTQPCRQK 105

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (206), Expect = 2e-20
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 49  PSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG--- 103
           P   +E     W++  I+R DAER L       G+FLIR SES+ G FSLSVK       
Sbjct: 5   PVETLE--VEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62

Query: 104 -VQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
            V+H+K+    +G +++   + F +L  LV+++    
Sbjct: 63  VVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKG 99

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (206), Expect = 2e-20
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 228 PSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG--- 282
           P   +E     W++  I+R DAER L       G+FLIR SES+ G FSLSVK       
Sbjct: 5   PVETLE--VEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGE 62

Query: 283 -VQHFKVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 317
            V+H+K+    +G +++   + F +L  LV+++    
Sbjct: 63  VVKHYKIRSLDNGGYYISPRITFPTLQALVQHYSKKG 99

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (202), Expect = 2e-20
 Identities = 39/56 (69%), Positives = 48/56 (85%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
          MEAIAK+DF ATA+DELSF++  +LK+LN E D NWY+AEL+GK+G IP NYIEMK
Sbjct: 1  MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (169), Expect = 8e-16
 Identities = 32/77 (41%), Positives = 38/77 (49%), Gaps = 25/77 (32%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWYRA 218
           A YDF      EL F+RGD++ V                         LN E D NWY+A
Sbjct: 5   AKYDFKATADDELSFKRGDILKV-------------------------LNEECDQNWYKA 39

Query: 219 ELDGKEGLIPSNYIEMK 235
           EL+GK+G IP NYIEMK
Sbjct: 40  ELNGKDGFIPKNYIEMK 56

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 3e-20
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 60  WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDG----------VQHFK 108
           W++G ++  +AE+LL+ K + G+FL+R S+S PGDF LSV+  D           V H  
Sbjct: 2   WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 61

Query: 109 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 152
           +             +F+SL +LVE+++   +  +    L+   P
Sbjct: 62  IRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQP 105

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (204), Expect = 3e-20
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 239 WYYGRITRADAERLLSNKHE-GAFLIRVSESSPGDFSLSVKCSDG----------VQHFK 287
           W++G ++  +AE+LL+ K + G+FL+R S+S PGDF LSV+  D           V H  
Sbjct: 2   WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 61

Query: 288 VLRDSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVP 331
           +             +F+SL +LVE+++   +  +    L+   P
Sbjct: 62  IRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQP 105

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 3e-20
 Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 55  MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQ-----HF 107
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D  +     H+
Sbjct: 2   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 61

Query: 108 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
           K+ +  SG F++    +FNSL +LV Y+   +
Sbjct: 62  KIRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 93

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 3e-20
 Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQ-----HF 286
           ++  +WY+G+ITR ++ERLL N     G FL+R SE++ G + LSV   D  +     H+
Sbjct: 2   IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY 61

Query: 287 KVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
           K+ +  SG F++    +FNSL +LV Y+   +
Sbjct: 62  KIRKLDSGGFYITSRTQFNSLQQLVAYYSKHA 93

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (201), Expect = 1e-19
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 239 WYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           ++YG I+RA+AE  L  +   +G FL+R    S G + LS+       HF + R  +G +
Sbjct: 8   FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 67

Query: 297 FLWV-VKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRD 355
            +          EL E++            LR                  +PG  +  RD
Sbjct: 68  AIAGGKAHCGPAELCEFYSRDPDGL--PCNLRKPCNRP-------SGLEPQPGVFDCLRD 118

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (199), Expect = 3e-19
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 60  WYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           ++YG I+RA+AE  L  +   +G FL+R    S G + LS+       HF + R  +G +
Sbjct: 8   FFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTY 67

Query: 118 FLWV-VKFNSLNELVEYHRTAS 138
            +          EL E++    
Sbjct: 68  AIAGGKAHCGPAELCEFYSRDP 89

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 1e-19
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 8/88 (9%)

Query: 59  DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 111
           +W++  I+R DAER L       G+F+IR SE++ G +SLSV+  D      V+H+K+  
Sbjct: 2   EWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRT 61

Query: 112 DSSGKFFL-WVVKFNSLNELVEYHRTAS 138
             +G F++     F++L ELV++++  +
Sbjct: 62  LDNGGFYISPRSTFSTLQELVDHYKKGN 89

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 1e-19
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 8/88 (9%)

Query: 238 DWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHFKVLR 290
           +W++  I+R DAER L       G+F+IR SE++ G +SLSV+  D      V+H+K+  
Sbjct: 2   EWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRT 61

Query: 291 DSSGKFFL-WVVKFNSLNELVEYHRTAS 317
             +G F++     F++L ELV++++  +
Sbjct: 62  LDNGGFYISPRSTFSTLQELVDHYKKGN 89

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (193), Expect = 4e-19
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           VQAL+DF PQE GEL FRRGD I V D SD +WW G    + G+FP  Y+
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 53

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (165), Expect = 3e-15
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A  DF+   + EL FR+   + +++  D  NW++    G+ G+ P NY+ 
Sbjct: 4  VQALFDFDPQEDGELGFRRGDFIHVMDNSDP-NWWKGACHGQTGMFPRNYVT 54

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 16/24 (66%), Positives = 17/24 (70%)

Query: 336 VQALYDFTPQEPGELEFRRDLKIK 359
           VQAL+DF PQE GEL FRR   I 
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIH 27

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 77.4 bits (191), Expect = 8e-19
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           E   VQAL+DF PQE GEL F+RGDVIT+ ++ D +WW G++  R+G+FP+ Y+
Sbjct: 1   ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 66.2 bits (162), Expect = 7e-15
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A  DFN     EL+F++  V+ ++N +D  NW+  +L+ + G+ PSNY+ 
Sbjct: 5  VQALFDFNPQESGELAFKRGDVITLINKDDP-NWWEGQLNNRRGIFPSNYVC 55

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 35.0 bits (81), Expect = 8e-04
 Identities = 16/28 (57%), Positives = 18/28 (64%)

Query: 332 EECLVQALYDFTPQEPGELEFRRDLKIK 359
           E   VQAL+DF PQE GEL F+R   I 
Sbjct: 1   ETKFVQALFDFNPQESGELAFKRGDVIT 28

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (191), Expect = 1e-18
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            + +V+A ++F      EL   +GD+I VT   +  WW G +  R G FP+ Y+
Sbjct: 9   HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 7e-14
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A+ +F  T EDELS  K  ++ +  +E+   W+   L+G+ G  PSNY+ 
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEG-GWWEGTLNGRTGWFPSNYVR 63

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 332 EECLVQALYDFTPQEPGELEFRRDLKIK 359
            + +V+A ++F      EL   +   I 
Sbjct: 9   HQLIVKARFNFKQTNEDELSVCKGDIIY 36

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 1e-18
 Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 55  MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 107
           ++  +WY+G++ R DAER L       G FLIR SE++ G +SLS++  D      V+H+
Sbjct: 3   IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 62

Query: 108 KVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 138
           K+ +  +G +++    +F +L +LV+++   +
Sbjct: 63  KIRKLDNGGYYITTRAQFETLQQLVQHYSERA 94

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 1e-18
 Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 234 MKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSDG-----VQHF 286
           ++  +WY+G++ R DAER L       G FLIR SE++ G +SLS++  D      V+H+
Sbjct: 3   IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY 62

Query: 287 KVLRDSSGKFFL-WVVKFNSLNELVEYHRTAS 317
           K+ +  +G +++    +F +L +LV+++   +
Sbjct: 63  KIRKLDNGGYYITTRAQFETLQQLVQHYSERA 94

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 5/99 (5%)

Query: 57  NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 115
           + +WY+  +TRA AE +L     +GAFL+R   + P  +++S +    ++H +V +    
Sbjct: 8   SKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRV-QQEGQ 65

Query: 116 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 154
              L   +F+SL +L+ Y+    + R   +KLR  + EE
Sbjct: 66  TVMLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEE 102

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 5/99 (5%)

Query: 236 NHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG 294
           + +WY+  +TRA AE +L     +GAFL+R   + P  +++S +    ++H +V +    
Sbjct: 8   SKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRV-QQEGQ 65

Query: 295 KFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEE 333
              L   +F+SL +L+ Y+    + R   +KLR  + EE
Sbjct: 66  TVMLGNSEFDSLVDLISYYEKHPLYR--KMKLRYPINEE 102

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (187), Expect = 2e-18
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+AL+ +   +P +LEF+ GD+I V  + ++ W  GE   + G+FP  ++
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (161), Expect = 1e-14
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +  A   + AT  ++L F++  ++ +L+  ++  W   E  GK G+ P  ++E
Sbjct: 7  QVEALFSYEATQPEDLEFQEGDIILVLSKVNE-EWLEGESKGKVGIFPKVFVE 58

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
           V+AL+ +   +P +LEF+    I
Sbjct: 8   VEALFSYEATQPEDLEFQEGDII 30

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 75.5 bits (186), Expect = 3e-18
 Identities = 19/51 (37%), Positives = 34/51 (66%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           LV ALYD+  + P E+  ++GD++T+ + +++ WW  E+  R+G  PA Y+
Sbjct: 2   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 52

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 12/51 (23%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A +D+   +  E++ +K  +L +LN  +  +W++ E++ ++G +P+ Y++
Sbjct: 4  LALYDYQEKSPREVTMKKGDILTLLNSTNK-DWWKVEVNDRQGFVPAAYVK 53

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 335 LVQALYDFTPQEPGELEFRRDLKI 358
           LV ALYD+  + P E+  ++   +
Sbjct: 2   LVLALYDYQEKSPREVTMKKGDIL 25

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.3 bits (190), Expect = 7e-18
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 53  IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLR 111
           + + N  +  G I++     +LS K  G FL+R SESS  G  + +    D     ++  
Sbjct: 2   LALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQI-- 59

Query: 112 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGEL 171
            S   +    +   S  E++  ++    +      L  + P+    +A   +   E  E 
Sbjct: 60  QSVEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKYCRPESQEH 119

Query: 172 E 172
            
Sbjct: 120 P 120

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]} Length = 141

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.3 bits (190), Expect = 7e-18
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 232 IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLR 290
           + + N  +  G I++     +LS K  G FL+R SESS  G  + +    D     ++  
Sbjct: 2   LALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQI-- 59

Query: 291 DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGEL 350
            S   +    +   S  E++  ++    +      L  + P+    +A   +   E  E 
Sbjct: 60  QSVEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKYCRPESQEH 119

Query: 351 E 351
            
Sbjct: 120 P 120

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 9e-18
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
              C V A+YD+      EL F +G +I V ++ D  WW GEI    GLFP+ Y+    D
Sbjct: 32  HPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD 91

Query: 212 D 212
            
Sbjct: 92  S 92

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 6e-15
 Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          + IA +D+ A  EDELSF K Q++ ++N +D  +W++ E++G  GL PSNY++M
Sbjct: 36 QVIAMYDYAANNEDELSFSKGQLINVMNKDDP-DWWQGEINGVTGLFPSNYVKM 88

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKIKRRK 362
              C V A+YD+      EL F +   I    
Sbjct: 32  HPVCQVIAMYDYAANNEDELSFSKGQLINVMN 63

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 43/81 (53%)

Query: 197 RKGLFPATYI-------------------------------------------LNMEDDM 213
           +KG FPA+++                                           +  +DD 
Sbjct: 8   QKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDP 67

Query: 214 NWYRAELDGKEGLIPSNYIEM 234
           +W++ E++G  GL PSNY++M
Sbjct: 68  DWWQGEINGVTGLFPSNYVKM 88

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 60  WYYGRITRADAERLLSNK--HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 117
           +++G ITR +AE  L      +G +L+R S +  G F+LSV       H+ + R+ +G +
Sbjct: 7   FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY 66

Query: 118 FLW-VVKFNSLNELVEYHRTAS 138
            +       S  +L  YH   S
Sbjct: 67  AIAGGRTHASPADLCHYHSQES 88

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 239 WYYGRITRADAERLLSNK--HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKF 296
           +++G ITR +AE  L      +G +L+R S +  G F+LSV       H+ + R+ +G +
Sbjct: 7   FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTY 66

Query: 297 FLW-VVKFNSLNELVEYHRTAS 317
            +       S  +L  YH   S
Sbjct: 67  AIAGGRTHASPADLCHYHSQES 88

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 54  EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDG---VQHFKVL 110
            +      YG + R +    L N+  G F+IR SE +PG F ++    +    ++H+ V 
Sbjct: 5   TLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQ 64

Query: 111 R-DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKL---RDMVPEECLVQALYDFTPQ 166
             D++     +    +  ++ V   +    +      L   +D           +     
Sbjct: 65  PNDTAAAKKTFPDFLSEHSQFVNLLQWTKDTNGAPRFLKLHKDTALGS------FAPKRT 118

Query: 167 EP 168
            P
Sbjct: 119 AP 120

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Length = 131

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDG---VQHFKVL 289
            +      YG + R +    L N+  G F+IR SE +PG F ++    +    ++H+ V 
Sbjct: 5   TLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQ 64

Query: 290 R-DSSGKFFLWVVKFNSLNELVEYHRTASVSRSQDVKL---RDMVPEECLVQALYDFTPQ 345
             D++     +    +  ++ V   +    +      L   +D           +     
Sbjct: 65  PNDTAAAKKTFPDFLSEHSQFVNLLQWTKDTNGAPRFLKLHKDTALGS------FAPKRT 118

Query: 346 EP 347
            P
Sbjct: 119 AP 120

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (181), Expect = 1e-17
 Identities = 24/50 (48%), Positives = 31/50 (62%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +ALYDF   E  EL FR G+V+ V D S+  WW G +  + GLFPA Y+
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (160), Expect = 1e-14
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          A A +DF A  EDEL FR  +V+++L+  +  +W+   L  K GL P+NY+ 
Sbjct: 4  ARALYDFEALEEDELGFRSGEVVEVLDSSNP-SWWTGRLHNKLGLFPANYVA 54

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 336 VQALYDFTPQEPGELEFRRDLKIK 359
            +ALYDF   E  EL FR    ++
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVE 27

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 2e-17
 Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 6/97 (6%)

Query: 45  EGLIPSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSD 102
           E LI +   E     W++G+I+R ++E+++   +K  G FLIR  ++  G ++L +    
Sbjct: 18  EKLIATTAHEKM--PWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEG 74

Query: 103 GVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 138
            V H+++ +D +GK  +    KF++L +LVE++   +
Sbjct: 75  KVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKA 111

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 2e-17
 Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 6/97 (6%)

Query: 224 EGLIPSNYIEMKNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSD 281
           E LI +   E     W++G+I+R ++E+++   +K  G FLIR  ++  G ++L +    
Sbjct: 18  EKLIATTAHEKM--PWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEG 74

Query: 282 GVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYHRTAS 317
            V H+++ +D +GK  +    KF++L +LVE++   +
Sbjct: 75  KVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKA 111

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (181), Expect = 2e-17
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           V+ALYDF   E  EL F+ G++ITV D SD +WW GE     GLFP+ ++
Sbjct: 5   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 54

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (157), Expect = 4e-14
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A +DF A  ++EL+F+  +++ +L+  D  NW++ E     GL PSN++ 
Sbjct: 5  VRALYDFEAVEDNELTFKHGELITVLDDSDA-NWWQGENHRGTGLFPSNFVT 55

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
           V+ALYDF   E  EL F+    I
Sbjct: 5   VRALYDFEAVEDNELTFKHGELI 27

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 2e-17
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYI 206
           C V+AL+D+  Q   EL F +  +I   ++ +  WW G+  G ++  FP+ Y+
Sbjct: 7   CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKE-GLIPSNYIE 54
            A  D+ A  EDEL+F KS +++ +  ++   W+R +  GK+    PSNY+E
Sbjct: 9  VKALFDYKAQREDELTFIKSAIIQNVEKQEG-GWWRGDYGGKKQLWFPSNYVE 60

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 334 CLVQALYDFTPQEPGELEFRRDLKIK 359
           C V+AL+D+  Q   EL F +   I+
Sbjct: 7   CAVKALFDYKAQREDELTFIKSAIIQ 32

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
             ALY ++  EPG+L F  G+ I VT +    WW G IG R G+FP+ Y+
Sbjct: 11  YIALYPYSSVEPGDLTFTEGEEILVTQKDG-EWWTGSIGDRSGIFPSNYV 59

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (162), Expect = 8e-15
 Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
          E IA + +++    +L+F + + + +   + +  W+   +  + G+ PSNY++ K+  
Sbjct: 10 EYIALYPYSSVEPGDLTFTEGEEILVTQKDGE--WWTGSIGDRSGIFPSNYVKPKDSG 65

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (174), Expect = 1e-16
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYI 206
           L  ALYD+      +L F +G+   + + S+  WW          G  P+ Y+
Sbjct: 2   LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 3e-14
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIE 54
          +A +D+ A  ED+LSF K +  +ILN  +   W  R+   G+ G IPSNY+ 
Sbjct: 4  VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 335 LVQALYDFTPQEPGELEFRRDLKIK 359
           L  ALYD+      +L F +  K +
Sbjct: 2   LFVALYDYEAITEDDLSFHKGEKFQ 26

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 13/62 (20%), Positives = 22/62 (35%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
                  A+  +T  E  E+    G+ + V  +    WW        G FP+ Y+     
Sbjct: 12  YAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ 71

Query: 212 DM 213
           D+
Sbjct: 72  DV 73

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNHD 59
            +A   + A   DE+S  + + +++++   D  W+    D   G  PS Y++    D
Sbjct: 16 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLD-GWWVIRKDDVTGYFPSMYLQKSGQD 72

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (175), Expect = 2e-16
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            E    QAL  +T ++   L F + D+ITV ++ + +WW GE+   +G FP +Y+
Sbjct: 8   VENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVHGGRGWFPKSYV 61

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 4e-14
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM 55
          ++A A   + A  ++ L+F K  ++ +L  +++  W+  E+ G  G  P +Y+++
Sbjct: 11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQQEN--WWFGEVHGGRGWFPKSYVKI 63

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKI 358
            E    QAL  +T ++   L F +   I
Sbjct: 8   VENLKAQALCSWTAKKDNHLNFSKHDII 35

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.9 bits (174), Expect = 2e-16
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
             A YD+   E  EL F   D I   +  D  WW GE+     KGLFP+ Y+
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (158), Expect = 2e-14
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIEMKN 57
          A A++D++A  ++EL+F ++  +  +   DD  W    E DG +GL PSNY+ + N
Sbjct: 3  ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (174), Expect = 2e-16
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 151 VPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFPATYI 206
           +  + ++ AL+D+ PQ   EL  + GD +T+  R D+    WW   +  ++G  P   +
Sbjct: 1   IMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 59

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 4e-14
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMN--WYRAELDGKEGLIPSNYIEM 55
            A  D+    +DEL  ++   + I++ ED+    W+ A L+ KEG +P N + +
Sbjct: 7  IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 61

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 330 VPEECLVQALYDFTPQEPGELEFRRDLKI 358
           +  + ++ AL+D+ PQ   EL  +    +
Sbjct: 1   IMNKGVIYALWDYEPQNDDELPMKEGDCM 29

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (173), Expect = 2e-16
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYILNME 210
            E   V ALYD+ P    +L+ R+GD   + + S+  WW   +   ++G  P+ Y+   E
Sbjct: 6   SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

Query: 211 D 211
           D
Sbjct: 66  D 66

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          + +A +D+     ++L  RK     IL   +   W   + +G+EG IPSNY+ 
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 331 PEECLVQALYDFTPQEPGELEFRRDLKI 358
            E   V ALYD+ P    +L+ R+  + 
Sbjct: 6   SELKKVVALYDYMPMNANDLQLRKGDEY 33

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (173), Expect = 2e-16
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V+AL+DF   +  +L F++GD++ + D+ ++ WW+ E    ++G+ P  Y+
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A  DFN   E++L F+K  +L+I +  ++  W   + +GK G+IP  Y+E
Sbjct: 4  VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
           V+AL+DF   +  +L F++   +
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDIL 26

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (173), Expect = 3e-16
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
           + +A+YD+   +  E+ F+ GD I      D+ W +G +    R G+ PA Y+
Sbjct: 5   IFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (148), Expect = 6e-13
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5  AKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIE 54
          A +D+ A   DE+SF+    +  +   D+   Y   +  G+ G++P+NY+E
Sbjct: 8  AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 5e-16
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWH-GEIGARKGLFPATYI 206
            +ALY    +   EL F  G V      S +  W  G +  + GL P  Y+
Sbjct: 13  AKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A A +   A  + ELSF    V   ++   +  W    L+GK GLIP NY+E
Sbjct: 12 KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.003
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
            +ALY    +   EL F      
Sbjct: 13  AKALYACKAEHDSELSFTAGTVF 35

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 6e-16
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 55  MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGV------QHF 107
           ++ ++WY   I+R  AE+LL     EGAF++R S  +PG +++SV     +      +H+
Sbjct: 3   LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 61

Query: 108 KVLRDSSGKFFLWV---VKFNSLNELVEYHR 135
            +   +      +V     F+S+  L++YH+
Sbjct: 62  HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQ 92

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 6e-16
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 234 MKNHDWYYGRITRADAERLL-SNKHEGAFLIRVSESSPGDFSLSVKCSDGV------QHF 286
           ++ ++WY   I+R  AE+LL     EGAF++R S  +PG +++SV     +      +H+
Sbjct: 3   LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHY 61

Query: 287 KVLRDSSGKFFLWV---VKFNSLNELVEYHR 314
            +   +      +V     F+S+  L++YH+
Sbjct: 62  HIKETNDSPKRYYVAEKYVFDSIPLLIQYHQ 92

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 7e-16
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 22/78 (28%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
           +  A+Y F  + P EL       + + +  D                            W
Sbjct: 15  VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTE----------------------W 52

Query: 216 YRAELDGKEGLIPSNYIE 233
           + AE++GK+G +PSNYI 
Sbjct: 53  WLAEVNGKKGYVPSNYIR 70

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYIE 54
            A + F A   +ELS   +Q LKIL  +D   +  W+ AE++GK+G +PSNYI 
Sbjct: 16 YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIR 70

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 335 LVQALYDFTPQEPGELEFRRDLKI 358
           +  A+Y F  + P EL    + K+
Sbjct: 15  VYFAVYTFKARNPNELSVSANQKL 38

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.6 bits (170), Expect = 9e-16
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 21/84 (25%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ-----HWWHGEIGARKGLFPATYILNM 209
             VQA +D+T  +  EL+ + GDV+ V    +       W  G                 
Sbjct: 13  FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVK--------------- 57

Query: 210 EDDMNWYRAELDGKEGLIPSNYIE 233
            +       EL+   G+ P N+ E
Sbjct: 58  -ESDWNQHKELEKCRGVFPENFTE 80

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.8 bits (129), Expect = 4e-10
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYR----------AELDGKEGLI 48
            A+HD+ AT  DEL  +   V+ ++  ++    D  W             EL+   G+ 
Sbjct: 15 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 74

Query: 49 PSNYIE 54
          P N+ E
Sbjct: 75 PENFTE 80

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 1e-15
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMK 56
           E IAK++F+ TAE +L F K  VL I+ +  D NWY+A+   G+EG+IP+NY++ +
Sbjct: 7  TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 63

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 3e-13
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 24/84 (28%)

Query: 152 PEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
           P      A Y+F      +L F +GDV+T+   +    W                     
Sbjct: 4   PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNW--------------------- 42

Query: 212 DMNWYRAELDGKEGLIPSNYIEMK 235
              +      G+EG+IP+NY++ +
Sbjct: 43  ---YKAKNKVGREGIIPANYVQKR 63

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 1e-15
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 153 EECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW-HGEIGARKGLFPATYI 206
           ++ LV AL+ + P   G+L F +G+ + + ++S + W        ++G  P  ++
Sbjct: 5   QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 59

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 2e-14
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
           IA H +  + + +L F K + L+IL    +    ++   G+EG IP N++ 
Sbjct: 9  VIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 332 EECLVQALYDFTPQEPGELEFRRDLKI 358
           ++ LV AL+ + P   G+L F +  ++
Sbjct: 5   QDNLVIALHSYEPSHDGDLGFEKGEQL 31

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 24/78 (30%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
             ALY F  +E G+L FR+GDVIT+  +SD                            W+
Sbjct: 4   AVALYSFAGEESGDLPFRKGDVITILKKSDSQND------------------------WW 39

Query: 217 RAELDGKEGLIPSNYIEM 234
              ++G+EG+ P+NY+E+
Sbjct: 40  TGRVNGREGIFPANYVEL 57

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (162), Expect = 6e-15
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMN-WYRAELDGKEGLIPSNYIEM 55
          A+A + F      +L FRK  V+ IL   D  N W+   ++G+EG+ P+NY+E+
Sbjct: 4  AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 57

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGA--RKGLFPATYI 206
           ALYD+  +   +L F++G+ + + + ++  WW     +  + G  P+ Y+
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (152), Expect = 2e-13
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-RAELDGKEGLIPSNYIEMKN 57
          +A +D+ +  E +LSF+K + L+I+N  +   W   +   G+ G IPSNY+   +
Sbjct: 6  VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.3 bits (167), Expect = 2e-15
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHG-EIGARKGLFPATYI 206
           +V A+YDF   E  +L   RG    + +++D HWW   +    +G  P+ Y+
Sbjct: 4   IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.7 bits (155), Expect = 8e-14
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK 56
          +A +DF AT   +L   + Q   IL   D   W   +  G EG IPSNY+  K
Sbjct: 6  VAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK 58

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 335 LVQALYDFTPQEPGELEFRRDLKI 358
           +V A+YDF   E  +L   R  + 
Sbjct: 4   IVVAMYDFQATEAHDLRLERGQEY 27

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.9 bits (166), Expect = 2e-15
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQ-HWWHGEIGARKGLFPATYI 206
           L  ALYDF       L   +G+ + V   +    W   +    +G  P+ YI
Sbjct: 2   LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 53

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (164), Expect = 3e-15
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
          +A +DF A+ ++ LS  K + L++L    +  W  A+    +G +PSNYI   N
Sbjct: 4  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (162), Expect = 8e-15
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW-HGEIGARKGLFPATYI 206
            +V ALYD+      +L F++GD + V + S + W        ++G  P+ Y+
Sbjct: 5   IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 57

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 4e-14
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN 57
          +A +D+ A   ++LSF+K   + +L    +    R+    KEG IPSNY+   +
Sbjct: 8  VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 61

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 334 CLVQALYDFTPQEPGELEFRRDLKI 358
            +V ALYD+      +L F++  ++
Sbjct: 5   IIVVALYDYEAIHHEDLSFQKGDQM 29

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 3e-14
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ--HWWHGEIGA-RKGLFPATYI 206
            +VQ LY F+     EL F +G+ + V ++ +    WW  +    + GL P  Y+
Sbjct: 7   HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 5e-13
 Identities = 13/55 (23%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDM-NWYRAE-LDGKEGLIPSNYIEM 55
              + F++  E+EL+F K + ++++   ++   W++ +   G+ GL+P NY+ +
Sbjct: 9  VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 63

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 334 CLVQALYDFTPQEPGELEFRRDLKI 358
            +VQ LY F+     EL F +   +
Sbjct: 7   HVVQTLYPFSSVTEEELNFEKGETM 31

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGAR-----KGLFPATYI 206
           + Q    +      +L    G +I +  ++   WW GE+ AR     KG FPA+++
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY----RAELDGKEGLIPSNYIE 54
          A     + A+  ++LS    Q++ IL       W           ++G  P+++++
Sbjct: 10 AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
           A+  +T  E  E+    G+ + V  +    WW        G FP+ Y+
Sbjct: 5   AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 52

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          +A   + A   DE+S  + + +++++   D  W     D   G  PS Y++
Sbjct: 4  VAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWV-IRKDDVTGYFPSMYLQ 53

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 3e-14
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH--WWHGEIGARKGLFPATYI 206
            +ALY F  +   E+ F  GD+I V +++     W +G      G FP  Y+
Sbjct: 8   YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 5e-12
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDM-NWYRAELDGKEGLIPSNYIE 54
            A + F A   DE+SF    ++++         W      G  G  P NY+E
Sbjct: 8  YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 5e-14
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            +A+ D+      E+    GDV+ V ++S+  WW  ++ A++G  PA+++
Sbjct: 5   YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 54

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 9e-11
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
            A  D+  T+  E++     V++++   +   W+  ++  K G IP++++E
Sbjct: 5  YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWF-CQMKAKRGWIPASFLE 55

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYI 206
           V ALYD+   +P EL  R  +   + D S+ HWW  +     +G  P++Y+
Sbjct: 1   VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 51

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 55.3 bits (133), Expect = 5e-11
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 4  IAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE 54
          IA +D+      EL+ R  +   +L+  +   W   + +G EG  PS+Y+ 
Sbjct: 2  IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 336 VQALYDFTPQEPGELEFRRDLKI 358
           V ALYD+   +P EL  R D + 
Sbjct: 1   VIALYDYQTNDPQELALRCDEEY 23

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (149), Expect = 5e-13
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 157 VQALYDFTPQEP-GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNW 215
            +ALYDF P+ P  E+  ++GD++ +  + D                        D   W
Sbjct: 8   ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGR--------------------DSDWW 47

Query: 216 YRAELDGKEGLIPSNYIEM 234
                +G  G IP NYIE+
Sbjct: 48  KVRTKNGNIGYIPYNYIEI 66

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 3  AIAKHDFNA-TAEDELSFRKSQVLKILNMEDDM----NWYRAEL-DGKEGLIPSNYIEM 55
          A A +DF     E E++ +K  ++ IL+ +D +    +W++    +G  G IP NYIE+
Sbjct: 8  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 66

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 7e-13
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDDMNWY 216
            +ALYD+  +   +++   GD++TV   S       +    +           E+     
Sbjct: 6   YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAR----------PEEIGWLN 55

Query: 217 -RAELDGKEGLIPSNYIEMKNHDW 239
              E  G+ G  P  Y+E      
Sbjct: 56  GYNETTGERGDFPGTYVEYIGRKK 79

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 16/76 (21%)

Query: 1  MEAIAKHDFNATAEDELSFRKSQVLKILN---------------MEDDMNWY-RAELDGK 44
           +  A +D+    E+++      +L +                  E+        E  G+
Sbjct: 4  YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGE 63

Query: 45 EGLIPSNYIEMKNHDW 60
           G  P  Y+E      
Sbjct: 64 RGDFPGTYVEYIGRKK 79

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (146), Expect = 1e-12
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYI 206
            ++ YDF  +   EL   + DV+ + D   Q W         G  P   +
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNIL 53

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM 55
          A +K+DF A    ELS  K  VL+IL+      W++     G  G +P+N +++
Sbjct: 4  AKSKYDFVARNSSELSVMKDDVLEILDDRRQ--WWKVRNASGDSGFVPNNILDI 55

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (144), Expect = 2e-12
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 157 VQALYDFTPQE-PGELEFRRGDVITVTDRSDQHW-WHGEIGA--RKGLFPATYI 206
           V+ ++  T       L F +GDV+T+    ++    +GE      +G FP++Y 
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 3  AIAKHDFNATA-EDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
                  A   +  LSF +  VL +L  E+   W   E       G  PS+Y +
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTK 64

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 140 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQH----WWHGEIG 195
           S S    L    P E L QA  +F   +  ++    GD++ V  + D       W  + G
Sbjct: 3   SGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG 62

Query: 196 ARKGLFPATYI 206
             KG   ++++
Sbjct: 63  VTKGFVYSSFL 73

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 7e-08
 Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDM---NWYRAELDGKEGLIPSNYIEMKN 57
            A+ +FNA  + ++S  +  ++ ++  +D M   N +  +    +G + S++++  N
Sbjct: 20 FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 319 SRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKI 358
           S S    L    P E L QA  +F   +  ++       +
Sbjct: 3   SGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLV 42

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (142), Expect = 3e-12
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHW---WHGEIGARKGLFPATYI 206
            + LY +  ++  E+    GD I++  R         + +     GL P TYI
Sbjct: 2   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 54

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (126), Expect = 5e-10
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 2  EAIAKHDFNATAEDELSFRKSQVLKILN--MEDDMNWYRAELDGKEGLIPSNYIEM 55
          E    + +    +DE++      + ++             +  G+ GL+P+ YI +
Sbjct: 1  ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 56

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 32/110 (29%)

Query: 157 VQALYDFTPQE-----PGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED 211
           ++AL+D+   +        L FR GDV+ V D  D+ WW                     
Sbjct: 4   IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARR----------------- 46

Query: 212 DMNWYRAELDGKEGLIPSNYIE-------MKNHDWYYGRITRADAERLLS 254
               +        G IPS           +K  DW     ++   + +LS
Sbjct: 47  ---VHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLS 93

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 17/88 (19%)

Query: 5  AKHDFNATAED-----ELSFRKSQVLKILNMEDDMNW-----YRAELDGKEGLIPSNYIE 54
          A  D++ T +       LSFR   VL +++  D+  W     +        G IPS    
Sbjct: 6  ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

Query: 55 -------MKNHDWYYGRITRADAERLLS 75
                 +K  DW     ++   + +LS
Sbjct: 66 ERREWSRLKAKDWGSSSGSQGREDSVLS 93

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 159 ALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGEIGA--RKGLFPATYI 206
            +          L    GD++ +T    +H WW G   A    G FP   +
Sbjct: 15  GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 6/60 (10%)

Query: 1  MEAI----AKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIE 54
          ME                  L      ++++   E + NW+        + G  P N + 
Sbjct: 7  MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 152 PEECLVQALYDFTPQEPGE-------LEFRRGDVITVTDRSDQHWWHGEI---GARKGLF 201
           P    V+    ++  +  +       + F   D + V ++ +  WW G +   G   G  
Sbjct: 19  PVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFI 78

Query: 202 PATYIL 207
           P+   L
Sbjct: 79  PSPVKL 84

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 5  AKHDFNATAEDE-------LSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNY 52
              ++A  ED+       +SF     L +    ++ +W+   L     + G IPS  
Sbjct: 26 TNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNN-DWWIGRLVKEGCEIGFIPSPV 82

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 21/83 (25%)

Query: 155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQ---HWWHGEIGARKGLFPATYILNMED 211
            +  AL D+   +   L   RG V+ V  +       +W G +                 
Sbjct: 22  SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSV----------------- 64

Query: 212 DMNWYRAELDGKEGLIPSNYIEM 234
               Y  +L  + G  PS+ +  
Sbjct: 65  -QGDYYGDLAARLGYFPSSIVRE 86

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDD----------MNWYRAELDGKEGLIPSNY 52
          A+A  D+ A     L+  + QV+ + +                 Y  +L  + G  PS+ 
Sbjct: 24 AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSI 83

Query: 53 IEM 55
          +  
Sbjct: 84 VRE 86

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 334 CLVQALYDFTPQEPGELEFRRDLKIK 359
            +  AL D+   +   L   R   + 
Sbjct: 22  SMAVALQDYMAPDCRFLTIHRGQVVY 47

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 5e-10
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWW------HGEIGARKGLFPATYI 206
           +  + D+   +  E+   +G+V+ V   + Q+             A +G  P + +
Sbjct: 10  MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL 65

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 3  AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWY-----RAELDGKEGLIPSNYIE 54
               D+ A  E+E+   + +V+++L +                   EG +P + + 
Sbjct: 10 MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILA 66

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 30/84 (35%)

Query: 156 LVQALYDFTPQEP------GELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM 209
           L  A Y + P +        EL    G  + V    D+  +                   
Sbjct: 19  LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGF------------------- 59

Query: 210 EDDMNWYRAELDGKEGLIPSNYIE 233
                +    LDG+ GL+PSN+++
Sbjct: 60  -----YEGELLDGQRGLVPSNFVD 78

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 3e-09
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 3  AIAKHDFNAT------AEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIE 54
           +A++ +N         E EL     + L +    D D  +    LDG+ GL+PSN+++
Sbjct: 20 CVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 152 PEECLVQALYDFTPQEPG-------ELEFRRGDVITVTDRSDQHWWHGEI---GARKGLF 201
           P    V+    +              + F   D + + ++ +  WW G +   G   G  
Sbjct: 21  PVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFI 80

Query: 202 PATYIL 207
           P+   L
Sbjct: 81  PSPLRL 86

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 9/57 (15%)

Query: 5  AKHDFNATAED-------ELSFRKSQVLKILNMEDDMNWY--RAELDGKEGLIPSNY 52
              +    ++        +SF     L I    ++  W     +   + G IPS  
Sbjct: 28 TNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPL 84

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 10/66 (15%)

Query: 152 PEECLVQALYDFTPQEPG-------ELEFRRGDVITVTDRSDQHWWHGEI---GARKGLF 201
           P    V+    +              + F   D + + ++    WW G +   G      
Sbjct: 21  PVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFI 80

Query: 202 PATYIL 207
           P+   L
Sbjct: 81  PSPQRL 86

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 9/57 (15%)

Query: 5  AKHDFNATAED-------ELSFRKSQVLKILNMEDDMNW--YRAELDGKEGLIPSNY 52
              +    ++        ++F     L I     +  W     +  G    IPS  
Sbjct: 28 TNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQ 84

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 57  NHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSD 102
           N     G I++     LL ++  G FL+R SESS  G  + +     
Sbjct: 6   NDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERS 52

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 236 NHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSD 281
           N     G I++     LL ++  G FL+R SESS  G  + +     
Sbjct: 6   NDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERS 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	99.93
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	99.93
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	99.93
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.93
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.92
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.92
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.92
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.91
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.91
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.91
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.91
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.91
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	99.91
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.91
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.91
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.91
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.9
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.9
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.9
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.9
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.9
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.9
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.89
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.89
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.88
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.87
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.87
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.87
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.86
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.84
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.84
d1r1qa_	97	GRB2-related adaptor protein 2 (MONA, GRID) {Mouse	99.79
d1jyra_	96	Growth factor receptor-bound protein 2 (GRB2) {Hum	99.78
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.77
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.76
d1rjaa_	100	Tyrosine-protein kinase 6 (Breast tumor kinase, Br	99.75
d1opka2	101	Abl tyrosine kinase {Mouse (Mus musculus) [TaxId:	99.74
d1jwoa_	97	Csk homologous kinase Chk {Human (Homo sapiens) [T	99.72
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.71
d1k9aa2	101	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.71
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.7
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.7
d1a81a1	129	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.7
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.69
d1mila_	104	Shc adaptor protein {Human (Homo sapiens) [TaxId:	99.69
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.69
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.69
d2izva2	112	Suppressor of cytokine signaling 4, SOCS-4 {Human	99.69
d1i3za_	103	Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus	99.69
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.68
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.68
d1qcfa2	103	Hemopoetic cell kinase Hck {Human (Homo sapiens) [	99.68
d1rpya_	86	Adaptor protein Aps {Rat (Rattus norvegicus) [TaxI	99.68
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.68
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2oq1a1	130	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.67
d1g83a2	104	Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId:	99.67
d1lkka_	105	p56-lck tyrosine kinase {Human (Homo sapiens) [Tax	99.67
d2shpa2	109	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.67
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.67
d1d4ta_	104	The Xlp protein Sap {Human (Homo sapiens) [TaxId:	99.66
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.66
d1nrva_	105	Growth factor receptor-bound protein 10, GRB10 {Hu	99.66
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.66
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.66
d1a81a2	125	Syk tyrosine kinase {Human (Homo sapiens) [TaxId:	99.66
d1blja_	114	P55 Blk protein tyrosine kinase {Mouse (Mus muscul	99.66
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.65
d1o48a_	106	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.65
d2oq1a2	124	Tyrosine-protein kinase zap-70 {Human (Homo sapien	99.65
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.65
d2eyva1	109	Crk proto-oncogen {Human (Homo sapiens) [TaxId: 96	99.65
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.65
d2fcia1	105	Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId:	99.64
d2cs0a1	106	Hematopoietic SH2 domain containing protein HSH2D	99.64
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.64
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.63
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.63
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.62
d2qmsa1	113	Growth factor receptor-bound protein 7 {Human (Hom	99.62
d1qada_	107	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.62
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.62
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.62
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.61
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.6
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.6
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.6
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.6
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.6
d2c9wa2	103	Suppressor of cytokine signaling 2, SOCS-2 {Human	99.6
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.59
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.59
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.59
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.59
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.58
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.57
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.56
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.56
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.56
d1luia_	108	Itk/tsk protein tyrosine kinase {Mouse (Mus muscul	99.56
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.56
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.55
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.54
d1fu6a_	111	Phosphatidylinositol 3-kinase, p85-alpha subunit {	99.54
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.53
d2shpa3	108	Tyrosine phoshatase shp-2 {Human (Homo sapiens) [T	99.53
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.53
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.52
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.52
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.51
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.51
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.48
d1xa6a2	141	Beta-chimaerin, N-terminal domain {Human (Homo sap	99.48
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.46
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.45
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.44
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.44
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.43
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.43
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.42
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.42
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.42
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.42
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.41
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.41
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.41
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.41
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.41
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.41
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	99.4
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.4
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	99.39
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.39
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.38
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.38
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.38
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.37
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.36
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.36
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.34
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.33
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.32
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.32
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.29
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.29
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.28
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.25
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.24
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.24
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.23
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.23
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.2
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.16
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.13
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.1
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.99
d1uura3	131	STAT homologue {Dictyostelium discoideum [TaxId: 4	98.89
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.87
d1bg1a3	141	STAT3b {Mouse (Mus musculus) [TaxId: 10090]}	98.82
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.6
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	95.38
d1bf5a3	142	STAT-1 {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	94.39
d3buxb3	88	Cbl {Human (Homo sapiens) [TaxId: 9606]}	87.95

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.1e-26  Score=173.05  Aligned_cols=98  Identities=38%  Similarity=0.625  Sum_probs=90.1

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|++||.+|++.++|+||||+|.+.++.|+||++.+++|+||+|....+|.|++. +..|+||.+||+|
T Consensus         2 Le~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI~~   81 (101)
T d1opka2           2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH   81 (101)
T ss_dssp             GGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHHH
T ss_pred             cccCcccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECCCCCEEeCCCcccCCHHHHHHH
Confidence            577899999999999999999999999999999888999999999999999999999888888887 5789999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCcc
Q psy10189        313 HRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      |+.++.++  .++|+.|+|+.
T Consensus        82 y~~~~~~l--~~~L~~P~pr~  100 (101)
T d1opka2          82 HSTVADGL--ITTLHYPAPKR  100 (101)
T ss_dssp             HTTCCTTS--SSCCCEECCCC
T ss_pred             HhhCCCCC--ceECCCccCCC
Confidence            99998766  67899998764

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-26  Score=171.03  Aligned_cols=96  Identities=41%  Similarity=0.717  Sum_probs=87.2

Q ss_pred             cccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        236 NHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       236 ~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++|||||.|+|++||++|.  +.++|+||||+|.+.+|.|+|||+.+++|+||+|.++.+|.|++. +..|+||.+||+|
T Consensus         1 sepWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~   80 (100)
T d1rjaa_           1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNY   80 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHH
T ss_pred             CCCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECCCCCEEecCCCccCCHHHHHHH
Confidence            3699999999999999997  458999999999989999999999999999999999888889887 5789999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCcc
Q psy10189        313 HRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      |+.++++.  .++|+.|.|+.
T Consensus        81 y~~~~~~~--~~~L~~Pc~~~   99 (100)
T d1rjaa_          81 HRAQSLSH--GLRLAAPCRKH   99 (100)
T ss_dssp             HHHCCTTS--SSCCCSBCCCC
T ss_pred             HhhCCCCC--ccCcCeecCCC
Confidence            99999876  77899998763

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-26  Score=171.26  Aligned_cols=95  Identities=28%  Similarity=0.443  Sum_probs=85.2

Q ss_pred             ccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHH
Q psy10189        235 KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYH  313 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y  313 (376)
                      ..+|||||.|+|++|+++|++.++|+||||+|++.+|.|+|||+.+++|+||+|...+ +.|++. +..|+||.+||+||
T Consensus         2 s~~PWy~g~isR~eAe~~L~~~~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~~-~~~~~~~~~~F~sl~~LI~~y   80 (97)
T d1jwoa_           2 SLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRD-GHLTIDEAVFFCNLMDMVEHY   80 (97)
T ss_dssp             TTCTTEEESCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEESS-SEESSTTSCCBSCHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCccEEEEEEecCceEEEEEEEcC-CcEEecCCcccCCHHHHHHHH
Confidence            4579999999999999999999999999999988899999999999999999998754 556665 68999999999999


Q ss_pred             hhCCcCCcceeeeCCCCCc
Q psy10189        314 RTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       314 ~~~~~~~~~~~~L~~p~~~  332 (376)
                      +.++..+  .++|+.|+++
T Consensus        81 ~~~~~~L--~~~L~~P~~k   97 (97)
T d1jwoa_          81 SKDKGAI--CTKLVRPKRK   97 (97)
T ss_dssp             HHCCTTS--SSCCCCBCCC
T ss_pred             hhCCCCC--CccCCccCcC
Confidence            9998877  7789999864

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-26  Score=170.48  Aligned_cols=96  Identities=35%  Similarity=0.546  Sum_probs=85.7

Q ss_pred             ccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHH
Q psy10189        235 KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYH  313 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y  313 (376)
                      ..+|||||.|+|++||++|.+.++|+||||+|++.++.|+|||+.+++|+||+|...++ .|++. +..|+||.+||+||
T Consensus         2 ~~~PWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~-~~~~~~~~~F~sl~~LV~~y   80 (101)
T d1k9aa2           2 SLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHAS-KLSIDEEVYFENLMQLVEHY   80 (101)
T ss_dssp             ESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETT-EEESSSSSCBSSHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHHcCCCCCCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcCC-CceecCCcccCCHHHHHHHH
Confidence            45799999999999999999989999999999888999999999999999999987654 45565 68899999999999


Q ss_pred             hhCCcCCcceeeeCCCCCcc
Q psy10189        314 RTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       314 ~~~~~~~~~~~~L~~p~~~~  333 (376)
                      +.++.++  .++|+.|+++.
T Consensus        81 ~~~~~gl--~~~L~~P~~~~   98 (101)
T d1k9aa2          81 TTDADGL--CTRLIKPKVME   98 (101)
T ss_dssp             HHCCTTS--SSCCCEECCCT
T ss_pred             hhCCCCC--ceeCCccccCC
Confidence            9999876  77899998764

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.2e-26  Score=166.21  Aligned_cols=92  Identities=68%  Similarity=1.166  Sum_probs=83.6

Q ss_pred             cccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHHh
Q psy10189        236 NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHR  314 (376)
Q Consensus       236 ~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y~  314 (376)
                      ++|||||.|+|++||++|. +.++|+||||.|.+.++.|+|||+.+++|+||+|.++++|.|.+++..|+||.+||+||+
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~LV~~y~   81 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHR   81 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTT
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECCCCeEEeCCccCCCHHHHHHHHh
Confidence            4699999999999999995 568999999999988999999999999999999999888888888889999999999999


Q ss_pred             hCCcCCcceeeeC
Q psy10189        315 TASVSRSQDVKLR  327 (376)
Q Consensus       315 ~~~~~~~~~~~L~  327 (376)
                      .+++..+..+.|+
T Consensus        82 ~~~l~~~~~~~lr   94 (96)
T d1jyra_          82 STSVSRNQQIFLR   94 (96)
T ss_dssp             SSCSCSSSCCCCB
T ss_pred             hCCCCCCCcEEcc
Confidence            9999876665554

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.8e-26  Score=166.95  Aligned_cols=94  Identities=52%  Similarity=0.907  Sum_probs=86.3

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  313 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y  313 (376)
                      +..++||||.|+|++|+++|.+.++|+||||.|++.+|.|+|||+.+++|+||+|.++++|.|++++..|+||.+||+||
T Consensus         3 ~~~~~Wy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~LV~~y   82 (97)
T d1r1qa_           3 IEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVDYY   82 (97)
T ss_dssp             CSCCTTBCTTCCHHHHHHHHHTSCTTCEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSSCCBSSHHHHHHHT
T ss_pred             cccCCccCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcCCCeEEeCCCCcCCHHHHHHHH
Confidence            56789999999999999999988999999999988899999999999999999999999999988889999999999999


Q ss_pred             hhCCcCCcceeeeC
Q psy10189        314 RTASVSRSQDVKLR  327 (376)
Q Consensus       314 ~~~~~~~~~~~~L~  327 (376)
                      +.+++.....+.|+
T Consensus        83 ~~~~l~~~~~~~lr   96 (97)
T d1r1qa_          83 RTTSISKQKQVFLR   96 (97)
T ss_dssp             TTSCSCSSSCCCCC
T ss_pred             ccCCcCCCCCeECC
Confidence            99998775555544

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-25  Score=170.99  Aligned_cols=97  Identities=26%  Similarity=0.429  Sum_probs=87.6

Q ss_pred             ccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHH
Q psy10189        235 KNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVE  311 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~  311 (376)
                      +.+|||||.|+|++||.+|.  +.++|+||||+|.+.+|.|+|||+.++.|+||+|.+..+|.|+++ +..|+||.+||+
T Consensus         3 ~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~i~~~~~F~sl~eLV~   82 (129)
T d1a81a1           3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCH   82 (129)
T ss_dssp             TSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             CCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcCCCCeeecCCcccCCHHHHHH
Confidence            56799999999999999996  348899999999988999999999999999999999888899997 578999999999


Q ss_pred             HHhhCCcCCcceeeeCCCCCcc
Q psy10189        312 YHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       312 ~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      ||+.++.++  .+.|+.|++++
T Consensus        83 ~Y~~~~~gl--~~~L~~P~~~~  102 (129)
T d1a81a1          83 YHSQESDGL--VCLLKKPFNRP  102 (129)
T ss_dssp             HHTTCCTTS--SSCCCEECCCC
T ss_pred             HHhhCCCCC--cccCCCCCCCC
Confidence            999998776  77788888654

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=168.46  Aligned_cols=123  Identities=23%  Similarity=0.310  Sum_probs=100.3

Q ss_pred             cccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv  310 (376)
                      ...+|||||.|+|++|+++|.  +.++|+||||+|++.++.|+|||+.+++|+||+|....+|.|++. +..|+||.+||
T Consensus         3 ~~~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~Lv   82 (130)
T d2oq1a1           3 AAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELC   82 (130)
T ss_dssp             TTTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHH
T ss_pred             ccCCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcCCCceeccCCCCcCCHHHHH
Confidence            355799999999999999996  458999999999999999999999999999999998888899997 57899999999


Q ss_pred             HHHhhCCcCCcceeeeCCCCCccceEEEeccCCCCCCCCccccccceeeeecCCCCCCcc
Q psy10189        311 EYHRTASVSRSQDVKLRDMVPEECLVQALYDFTPQEPGELEFRRDLKIKRRKSAKTKDET  370 (376)
Q Consensus       311 ~~y~~~~~~~~~~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  370 (376)
                      +||+.++..+  .+.|+.|+++.....       ..+..     -+...+++|++.||+|
T Consensus        83 ~~Y~~~~~gL--~~~L~~P~~r~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~  128 (130)
T d2oq1a1          83 EFYSRDPDGL--PCNLRKPCNRPSGLE-------PQPGV-----FDCLRDAMVRDYVRQT  128 (130)
T ss_dssp             HHHHHCCTTS--SSCCCSBCCCCTTCC-------CBCCH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCCC--CccCCccCCCCCCCC-------CCcch-----HHHHHHHHHHhhccCc
Confidence            9999998776  778999987643211       11111     1234457888888875

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.5e-25  Score=164.75  Aligned_cols=95  Identities=37%  Similarity=0.584  Sum_probs=83.8

Q ss_pred             ccccccccccChHHHHHhh--cCCCCCceEEeecCCCCCceEEEEEeCC-----eeEEEEEEEcCCCcEEEe-ccccCCH
Q psy10189        235 KNHDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLRDSSGKFFLW-VVKFNSL  306 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L--~~~~~G~flvR~s~~~~~~~~ls~~~~~-----~v~h~~I~~~~~~~~~~~-~~~f~sl  306 (376)
                      +.+|||||.|+|++||++|  .+.++|+||||.|++.+|.|+||++..+     .|+|++|...++|.|++. +..|+||
T Consensus         2 e~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~~~~~~~~~~~~F~sl   81 (105)
T d1lkka_           2 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGL   81 (105)
T ss_dssp             CCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSH
T ss_pred             ccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcCCCCEEecCCcccCCH
Confidence            5689999999999999999  4578999999999988999999998743     489999999888999987 5789999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCC
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~  331 (376)
                      .+||+||+.+++++  .++|+.|.|
T Consensus        82 ~~LV~~y~~~~~gL--~~~L~~Pcp  104 (105)
T d1lkka_          82 HELVRHYTNASDGL--CTRLSRPCQ  104 (105)
T ss_dssp             HHHHHHHHHCCTTS--SSCCCSBCC
T ss_pred             HHHHHHHhhCCCCC--CccCCCcCC
Confidence            99999999998876  677888854

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=167.48  Aligned_cols=96  Identities=26%  Similarity=0.448  Sum_probs=85.8

Q ss_pred             cccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv  310 (376)
                      ++.+|||||.|+|.+||++|.  +.++|+||||.|+ .++.|+|||+.+++|+||+|..+.+|.|+++ +..|+||.+||
T Consensus        26 he~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~-~~~~yvLSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sL~~LI  104 (125)
T d1a81a2          26 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARD-NNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLV  104 (125)
T ss_dssp             GGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECS-SSSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHHHH
T ss_pred             cccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecC-CCCCEEEEeeccccceeEeeeEcCCCcEeccCCcccCCHHHHH
Confidence            577899999999999999884  6789999999985 5788999999999999999999888889887 57899999999


Q ss_pred             HHHhhCCcCCcceeeeCCCCCc
Q psy10189        311 EYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       311 ~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      +||+.++.++  .++|++|+++
T Consensus       105 ~~y~~~~~gL--~~~L~~P~~k  124 (125)
T d1a81a2         105 EHYSYKADGL--LRVLTVPCQK  124 (125)
T ss_dssp             HHHTTCCTTS--SSCCCCBCCC
T ss_pred             HHHhhCCCCC--CccCCeeCCC
Confidence            9999988765  6789999875

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.2e-25  Score=163.55  Aligned_cols=94  Identities=30%  Similarity=0.452  Sum_probs=83.4

Q ss_pred             cccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec------cccCCHHH
Q psy10189        236 NHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV------VKFNSLNE  308 (376)
Q Consensus       236 ~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~------~~f~sl~~  308 (376)
                      .+|||||.|+|++||.+|. +.++|+||||+|++.+|.|+|||+.++.|+||+|.+..+|.|++.+      ..|+||.+
T Consensus         2 d~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~~~~~~F~sl~~   81 (103)
T d1i3za_           2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcCCCcEEEeccCCcCccccCCHHH
Confidence            3699999999999999885 5689999999999999999999999999999999988888888852      46999999


Q ss_pred             HHHHHhhCCcCCcceeeeCCCCC
Q psy10189        309 LVEYHRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       309 lv~~y~~~~~~~~~~~~L~~p~~  331 (376)
                      ||+||+.++.++  .+.|+.|+.
T Consensus        82 LV~~y~~~~~gl--~~~L~~P~~  102 (103)
T d1i3za_          82 LVSKYGKPGQGL--VVHLSNPIM  102 (103)
T ss_dssp             HHHHTTSSSSSS--SSCCCEECC
T ss_pred             HHHHhhhCCCCC--eEeCCcccc
Confidence            999999988766  677888874

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=162.90  Aligned_cols=97  Identities=25%  Similarity=0.386  Sum_probs=85.8

Q ss_pred             cccccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe------ccccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW------VVKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~------~~~f~sl  306 (376)
                      ++.+|||||.|+|++||.+|.. ..+|+||||.|.+.++.|+||++.++.|+||+|.+..+|.+++.      ...|+||
T Consensus         1 le~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~F~sl   80 (104)
T d1d4ta_           1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKI   80 (104)
T ss_dssp             CTTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSH
T ss_pred             CCcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCCcEEEeeccCCCCcccCCH
Confidence            3568999999999999999964 46899999999989999999999999999999999888888764      3679999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      .+||+||+.++..+  .+.|++|+++
T Consensus        81 ~~Li~~y~~~~~gl--~~~L~~P~~r  104 (104)
T d1d4ta_          81 KNLISAFQKPDQGI--VIPLQYPVEK  104 (104)
T ss_dssp             HHHHHHHTSSSSSS--SSCCCEECCC
T ss_pred             HHHHHHHhhCCCCC--cEeCCccccC
Confidence            99999999988776  6778988864

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.5e-25  Score=163.21  Aligned_cols=97  Identities=27%  Similarity=0.523  Sum_probs=86.0

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  313 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~y  313 (376)
                      +..+|||||.|+|++|+.+|+  ++|+||||.|++.+|.|+|||+.++.|+||+|. ..++.|.+.+..|+||.|||+||
T Consensus         4 l~~~pWyhG~i~R~~Ae~lL~--~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~-~~~~~~~~~~~~F~sl~~LV~~y   80 (104)
T d1mila_           4 LRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-DPEGVVRTKDHRFESVSHLISYH   80 (104)
T ss_dssp             TTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEB-CTTSSEECSSCEESSHHHHHHHH
T ss_pred             cccCCCcCCCCCHHHHHHHHh--cCCcEEEEecCCCCCCEEEEEEEccccceEEEE-eCCCEEEeCCeeECCHHHHHHHH
Confidence            678899999999999999996  489999999998999999999999999999995 45778888889999999999999


Q ss_pred             hhCCcCCc---ceeeeCCCCCcc
Q psy10189        314 RTASVSRS---QDVKLRDMVPEE  333 (376)
Q Consensus       314 ~~~~~~~~---~~~~L~~p~~~~  333 (376)
                      +.++++..   ..+.|++|+++.
T Consensus        81 ~~~~~~~~~~~~~~~L~~Pi~R~  103 (104)
T d1mila_          81 MDNHLPIISAGSELCLQQPVERK  103 (104)
T ss_dssp             HHHTCCEEETTEEECCCEECCCC
T ss_pred             hhCCCCcccCCcceEeCCCcCCc
Confidence            99887642   456788888653

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-24  Score=166.01  Aligned_cols=95  Identities=31%  Similarity=0.544  Sum_probs=85.1

Q ss_pred             cccccccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv  310 (376)
                      ++.+|||||.|+|++|+++|..  .++|+||||.|+ .++.|+|||+.+++|+||+|..+.+|.|+++ +..|+||.+||
T Consensus        26 ~e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~-~~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV  104 (124)
T d2oq1a2          26 HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLV  104 (124)
T ss_dssp             GGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECS-STTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHHH
T ss_pred             ccCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecC-CCCCEEEEeecCCceEEEEEEECCCCCEEeCCCcccCCHHHHH
Confidence            5678999999999999999963  578999999995 4789999999999999999999888889887 57899999999


Q ss_pred             HHHhhCCcCCcceeeeCCCCC
Q psy10189        311 EYHRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       311 ~~y~~~~~~~~~~~~L~~p~~  331 (376)
                      +||+.++.++  .+.|+.|.|
T Consensus       105 ~~y~~~~~gL--~~~L~~PcP  123 (124)
T d2oq1a2         105 EYLKLKADGL--IYCLKEACP  123 (124)
T ss_dssp             HHHHHCCTTS--SSCCCSBCC
T ss_pred             HHHhhCCCCC--cccCCCcCc
Confidence            9999998776  677888876

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=162.65  Aligned_cols=97  Identities=27%  Similarity=0.487  Sum_probs=81.6

Q ss_pred             cccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC---cEEEe--ccccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---KFFLW--VVKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~---~~~~~--~~~f~sl  306 (376)
                      ++.+|||||.|+|++||++|.  +.++|+||||+|++.+|.|+|||+.+++|+||+|...+++   .|.+.  ...|+||
T Consensus         2 h~~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl   81 (105)
T d1nrva_           2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL   81 (105)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSH
T ss_pred             CccCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCCCeEEEEECCCCcccCCH
Confidence            457899999999999999995  4689999999999889999999999999999999876543   34454  3689999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      .+||+||+.++..+  .++|+.|.++
T Consensus        82 ~~LV~~y~~~~~~L--~~~L~~Pc~r  105 (105)
T d1nrva_          82 IQLVDFYQLNKGVL--PCKLKHHCIR  105 (105)
T ss_dssp             HHHHHHHTTCCTTS--SSCCCEECCC
T ss_pred             HHHHHHhccCcCCC--CccCCcCCCC
Confidence            99999999998776  6778888754

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.7e-25  Score=164.48  Aligned_cols=96  Identities=30%  Similarity=0.582  Sum_probs=84.7

Q ss_pred             cccccccccccChHHHHHhhcCC-CCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~-~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|++||++|... .+|+||||.| +.++.|+|||+.+++|+||+|.. .++.|.+++..|+||.+||+|
T Consensus         6 he~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S-~~~~~yvLSv~~~~~v~H~~I~~-~~~~~~~~~~~F~sl~~LV~~   83 (105)
T d2fcia1           6 HESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRVQQ-EGQTVMLGNSEFDSLVDLISY   83 (105)
T ss_dssp             TSSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEEC-SSTTCEEEEEEETTEECCCEEBC-CSSCEECSSSEESTTHHHHHH
T ss_pred             cccCCCccCCCCHHHHHHHHHhCCCCCeEEEEec-CCCCCEEEEEEeccccEEEEEEe-cCCeEecCCcccCCHHHHHHH
Confidence            57789999999999999999754 4899999999 57899999999999999999975 455677778899999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCcc
Q psy10189        313 HRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      |+.+++.+  .++|++|+++.
T Consensus        84 y~~~~~~~--~~~L~~P~~~~  102 (105)
T d2fcia1          84 YEKHPLYR--KMKLRYPINEE  102 (105)
T ss_dssp             HHHSCCST--TCSSCCCCCCT
T ss_pred             HhhCCCCC--ccCCCCCCCCC
Confidence            99999987  67899999764

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.3e-24  Score=159.53  Aligned_cols=94  Identities=32%  Similarity=0.629  Sum_probs=83.4

Q ss_pred             cccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEe-ccccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLW-VVKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~-~~~f~s  305 (376)
                      ++.+|||||.|+|++||++|.  +.++|+||||.|++.+|.|+||++.     ++.|+||+|....+|.|++. +..|+|
T Consensus         3 l~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~~g~~~~~~~~~F~s   82 (104)
T d1g83a2           3 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFET   82 (104)
T ss_dssp             GGGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECTTSCEEETTTEEESS
T ss_pred             cccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcCCCCEEecCCcccCC
Confidence            678899999999999999996  4589999999999999999999986     46799999999888888887 578999


Q ss_pred             HHHHHHHHhhCCcCCcceeeeCCC
Q psy10189        306 LNELVEYHRTASVSRSQDVKLRDM  329 (376)
Q Consensus       306 l~~lv~~y~~~~~~~~~~~~L~~p  329 (376)
                      |.+||+||+.+++++  .++|+.|
T Consensus        83 l~~LV~~y~~~~~gL--~~~L~~P  104 (104)
T d1g83a2          83 LQQLVQHYSERAAGL--SSRLVVP  104 (104)
T ss_dssp             HHHHHHHHHHCCTTS--SSCCCCC
T ss_pred             HHHHHHHHhhCCCCC--ceeCCCC
Confidence            999999999998876  6677765

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-24  Score=162.42  Aligned_cols=96  Identities=32%  Similarity=0.498  Sum_probs=81.8

Q ss_pred             cccccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHHH
Q psy10189        236 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEYH  313 (376)
Q Consensus       236 ~~~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~y  313 (376)
                      +++||||.|+|.+||++|.. ..+|+||||+|.+.+|.|+|||+.+++|+||+|...+ +.|++. ...|+||.+||+||
T Consensus         2 ~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~-~~~~~~~~~~F~sl~~LV~~y   80 (109)
T d2shpa2           2 SRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTG-DYYDLYGGEKFATLAELVQYY   80 (109)
T ss_dssp             CSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSS-SCEEETTSCEESSHHHHHHHH
T ss_pred             CCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcC-CeEEEcCCcccCCHHHHHHHH
Confidence            57899999999999999964 4589999999998999999999999999999998654 556664 68999999999999


Q ss_pred             hhCCcCCc----ceeeeCCCCCc
Q psy10189        314 RTASVSRS----QDVKLRDMVPE  332 (376)
Q Consensus       314 ~~~~~~~~----~~~~L~~p~~~  332 (376)
                      +.+++...    ..+.|++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~L~~P~~~  103 (109)
T d2shpa2          81 MEHHGQLKEKNGDVIELKYPLNC  103 (109)
T ss_dssp             HTCTTCSBSSSSCBCCCCEECCC
T ss_pred             HHCCCCcccCCCCeeeccccCCC
Confidence            99876653    34678888754

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-24  Score=160.62  Aligned_cols=96  Identities=36%  Similarity=0.670  Sum_probs=84.6

Q ss_pred             cccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeC-----CeeEEEEEEEcCCCcEEEe-ccccCC
Q psy10189        234 MKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCS-----DGVQHFKVLRDSSGKFFLW-VVKFNS  305 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~-----~~v~h~~I~~~~~~~~~~~-~~~f~s  305 (376)
                      ++.++||||.|+|++||++|.  +.++|+||||+|.+.+|.|+||++..     ..|+||+|....+|.|++. +..|+|
T Consensus         2 l~~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~~g~~~~~~~~~F~s   81 (106)
T d1o48a_           2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNS   81 (106)
T ss_dssp             GGGSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEESS
T ss_pred             cccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEecCCCEEEcCCeeECC
Confidence            567899999999999999995  45899999999998999999999864     3689999999888999987 578999


Q ss_pred             HHHHHHHHhhCCcCCcceeeeCCCCC
Q psy10189        306 LNELVEYHRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       306 l~~lv~~y~~~~~~~~~~~~L~~p~~  331 (376)
                      |.+||+||+.++..+  .++|+.|.|
T Consensus        82 l~eLV~~y~~~~~gL--~~~L~~pcP  105 (106)
T d1o48a_          82 LQQLVAYYSKHADGL--CHRLTTVCP  105 (106)
T ss_dssp             HHHHHHHHTTCCTTS--SSCCCSBCC
T ss_pred             HHHHHHHHhhCCCCC--CccCCCcCC
Confidence            999999999998876  677888865

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.2e-24  Score=162.16  Aligned_cols=97  Identities=34%  Similarity=0.518  Sum_probs=84.9

Q ss_pred             cccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEe----CCeeEEEEEEEcCCCcEEEec-cccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKC----SDGVQHFKVLRDSSGKFFLWV-VKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~----~~~v~h~~I~~~~~~~~~~~~-~~f~sl  306 (376)
                      ++.++||||.|+|.+||++|.  +.++|+||||.|++.++.|+|||+.    +..|+||+|.+.++|.|++.+ ..|+||
T Consensus         9 l~~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~~g~~~l~~~~~F~sl   88 (114)
T d1blja_           9 LEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITFPTL   88 (114)
T ss_dssp             SCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEESSH
T ss_pred             cccCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcCCCCEEecCCceECCH
Confidence            677899999999999999884  4689999999998889999999985    356899999998888899874 689999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      .+||+||+.+++++  .++|+.|.++
T Consensus        89 ~eLV~~y~~~~~gL--~~~L~~PC~~  112 (114)
T d1blja_          89 QALVQHYSKKGDGL--CQKLTLPCVN  112 (114)
T ss_dssp             HHHHHHHHHCCSSS--SSCCCCCSCC
T ss_pred             HHHHHHHhhCCCCC--CccCCccCcC
Confidence            99999999998876  6778888543

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.6e-24  Score=158.34  Aligned_cols=94  Identities=34%  Similarity=0.563  Sum_probs=83.2

Q ss_pred             ccccccccChHHHHHhh--cCCCCCceEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEe-ccccCCHHH
Q psy10189        237 HDWYYGRITRADAERLL--SNKHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLW-VVKFNSLNE  308 (376)
Q Consensus       237 ~~w~~g~i~r~~ae~~L--~~~~~G~flvR~s~~~~~~~~ls~~~-----~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~  308 (376)
                      ++||||.|+|++||++|  .+.++|+||||+|.+.+|.|+|||+.     ++.|+||+|...++|.|++. +..|+||.+
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~~g~~~~~~~~~F~sl~~   80 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQE   80 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBSSHHH
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcCCCceeecCCcccCCHHH
Confidence            47999999999999998  45689999999999999999999985     46899999999888888886 578999999


Q ss_pred             HHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        309 LVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       309 lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ||+||+.++.++  .++|+.|.|.
T Consensus        81 LV~~y~~~~~gL--~~~L~~PC~~  102 (103)
T d1qcfa2          81 LVDHYKKGNDGL--CQKLSVPCMS  102 (103)
T ss_dssp             HHHHHTSSCTTS--SSCCCSBCCC
T ss_pred             HHHHHhhCCCCC--CccCCccCCC
Confidence            999999998876  7778888754

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-24  Score=164.13  Aligned_cols=101  Identities=23%  Similarity=0.275  Sum_probs=87.0

Q ss_pred             cccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-----cccCCH
Q psy10189        232 IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-----VKFNSL  306 (376)
Q Consensus       232 ~~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~-----~~f~sl  306 (376)
                      ..+..++||||.|+|++|+++|++.++|+||||.|.+.++.|+||++.++.|+||+|... +|.|.+..     ..|+||
T Consensus         6 ~~l~~~~Wy~g~isR~~Ae~lL~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~-~~~~~l~~~~~~~~~F~sl   84 (112)
T d2izva2           6 LQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQW-NHNFSFDAHDPCVFHSPDI   84 (112)
T ss_dssp             HHHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEE-TTEEESCTTCTTSCCBSSH
T ss_pred             HHhccCCCcCCCCCHHHHHHHHccCCCCcEEEeecCCCCCCeEEEEEecCCceEEEEEEe-CCeEEEeecccCcccCCCH
Confidence            347889999999999999999999899999999998889999999999999999999875 46676652     379999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      .+||+||+.+++.......|+.|++++
T Consensus        85 ~~LV~~Y~~~~~~~~~~~llt~P~~r~  111 (112)
T d2izva2          85 TGLLEHYKDPSACMFFEPLLSTPLIRT  111 (112)
T ss_dssp             HHHHHHTCCGGGCCTTSCCCCEECCCC
T ss_pred             HHHHHHHhcccccccCccccCCCCCCC
Confidence            999999999887765556688887653

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=4.6e-24  Score=160.51  Aligned_cols=96  Identities=31%  Similarity=0.423  Sum_probs=83.1

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~~  312 (376)
                      ++.++||||.|+|++|+++|.+.++|+||||.| +.++.|+||++.+++|+||+|...++|.+++. ...|+||.+||+|
T Consensus         6 ~~~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S-~~~~~y~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI~~   84 (107)
T d1qada_           6 HDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLH   84 (107)
T ss_dssp             GSGGGTEEEECCHHHHHHHHTTCCTTEEEEEEC----CCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHHHH
T ss_pred             cCCCcccCCCCCHHHHHHHHcCCCCCcEEEEec-CCCCCEEEEEEecCCeEEEEEEECCCCeEEcCCCCccCCHHHHHHH
Confidence            677899999999999999999999999999999 56899999999999999999999887777665 4789999999999


Q ss_pred             HhhCCcCCc---ceeeeCCCC
Q psy10189        313 HRTASVSRS---QDVKLRDMV  330 (376)
Q Consensus       313 y~~~~~~~~---~~~~L~~p~  330 (376)
                      |+.+++...   ..+.|+.|+
T Consensus        85 Y~~~~l~~~~~~l~~~L~~Pv  105 (107)
T d1qada_          85 YQHTSLVQHNDSLNVTLAYPV  105 (107)
T ss_dssp             HHHSCGGGTCTTCCCCCCEET
T ss_pred             HHhCccccccCCCceEccccc
Confidence            999987753   466788776

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.6e-24  Score=160.60  Aligned_cols=98  Identities=29%  Similarity=0.547  Sum_probs=83.5

Q ss_pred             cccccccccccChHHHHHhhc--CCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcC-CCcEE--Ee--ccccCCH
Q psy10189        234 MKNHDWYYGRITRADAERLLS--NKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDS-SGKFF--LW--VVKFNSL  306 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~--~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~-~~~~~--~~--~~~f~sl  306 (376)
                      +..++||||.|+|++||++|.  +.++|+||||+|.+.+|.|+|||+.+++|+||+|...+ ++.++  +.  ...|+||
T Consensus         7 h~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl   86 (113)
T d2qmsa1           7 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDL   86 (113)
T ss_dssp             TTCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESSSCEEEESSTTSSCBSSH
T ss_pred             hcCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCCCeEEEEecCCCcccCCH
Confidence            567899999999999999996  56899999999998889999999999999999998654 34443  33  2579999


Q ss_pred             HHHHHHHhhCCcCCcceeeeCCCCCcc
Q psy10189        307 NELVEYHRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       307 ~~lv~~y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      .+||+||+.++..+  .+.|+.|+++-
T Consensus        87 ~~LI~~y~~~~~~L--~~~L~~pc~r~  111 (113)
T d2qmsa1          87 LQLVEFHQLNRGIL--PCLLRHCCTRV  111 (113)
T ss_dssp             HHHHHHHTTCCTTS--SSCCCEECCSS
T ss_pred             HHHHHHhccCCCCC--ccccCCCCcCc
Confidence            99999999998876  67888888763

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4e-23  Score=155.37  Aligned_cols=95  Identities=28%  Similarity=0.562  Sum_probs=81.2

Q ss_pred             cccccccccccChHHHHHhhc-CCCCCceEEeecCCCCCceEEEEEeC------CeeEEEEEEEcCCC--cEEEe-cccc
Q psy10189        234 MKNHDWYYGRITRADAERLLS-NKHEGAFLIRVSESSPGDFSLSVKCS------DGVQHFKVLRDSSG--KFFLW-VVKF  303 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~-~~~~G~flvR~s~~~~~~~~ls~~~~------~~v~h~~I~~~~~~--~~~~~-~~~f  303 (376)
                      ++.++||||.|+|++||++|. ..++|+||||+|+ .++.|+|||+..      +.|+||+|....++  .|++. ...|
T Consensus         3 l~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~~~~~~~~~F   81 (108)
T d1luia_           3 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVF   81 (108)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECC-TTTCEEEEEECSCCTTTCSCEEEEECEECCCSSCCEESSSSCCB
T ss_pred             cccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecC-CCCCEEEEEEecCCcccCCceeEEEEEEecCCCceeecCCCccc
Confidence            577899999999999999995 4588999999995 589999999873      46899999886655  46665 5899


Q ss_pred             CCHHHHHHHHhhCCcCCcceeeeCCCCC
Q psy10189        304 NSLNELVEYHRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       304 ~sl~~lv~~y~~~~~~~~~~~~L~~p~~  331 (376)
                      +||.+||+||+.++..+  .++|++|+|
T Consensus        82 ~sl~~LV~~y~~~~~~L--~~~L~~Pv~  107 (108)
T d1luia_          82 DSIPLLIQYHQYNGGGL--VTRLRYPVC  107 (108)
T ss_dssp             SSHHHHHHHHHTTCCSS--SSSSSEECC
T ss_pred             CCHHHHHHHHhhCCCCC--ccCCCCcCC
Confidence            99999999999998876  788999986

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-22  Score=152.69  Aligned_cols=97  Identities=34%  Similarity=0.539  Sum_probs=84.7

Q ss_pred             ccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--cccCCHHHHHHH
Q psy10189        235 KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--VKFNSLNELVEY  312 (376)
Q Consensus       235 ~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~--~~f~sl~~lv~~  312 (376)
                      ...|||||.|+|++|+++|.+.++|+||||.|....+ |+||++.++.++||+|...++|.|++.+  ..|+||.+||+|
T Consensus         7 ~~~pWy~g~isR~eAe~lL~~~~~G~FLvR~S~~~~~-y~Lsv~~~~~~~h~~I~~~~~g~~~~~~~~~~F~sl~eLV~~   85 (106)
T d2cs0a1           7 GVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTF   85 (106)
T ss_dssp             SCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHHHHH
T ss_pred             CCCCCccCCCCHHHHHHHHcCCCCCcEEEEecCCCCC-EEEEEEecCCceeEEEEEcCCCCEEEecCCccCCCHHHHHHH
Confidence            3468999999999999999998999999999965555 9999999999999999998888888763  679999999999


Q ss_pred             HhhCCcCCcceeeeCCCCCcc
Q psy10189        313 HRTASVSRSQDVKLRDMVPEE  333 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~~  333 (376)
                      |+++++.. ..+.|++|++++
T Consensus        86 y~~~~~~~-~~~~L~~P~~~~  105 (106)
T d2cs0a1          86 HQQKPIEP-RRELLTQPCRQK  105 (106)
T ss_dssp             HTTSCCSS-CCCCCCSBCCCS
T ss_pred             HHHCCCCC-ccCcccCcCCCC
Confidence            99998754 356799998764

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.3e-23  Score=154.40  Aligned_cols=92  Identities=32%  Similarity=0.593  Sum_probs=80.2

Q ss_pred             cccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC-----------------cEEEec
Q psy10189        238 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG-----------------KFFLWV  300 (376)
Q Consensus       238 ~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~-----------------~~~~~~  300 (376)
                      .||||.|+|++||++|.+.++|+||||+|.+.++.|+||++.+++|+||+|.....+                 .+.+++
T Consensus         1 sWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGD   80 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSSCSTTCEEEECCCSSSSCEEEEEEETTEEEEEEEECCCCSSCCCSSSSCCCCSCCCCCEEETT
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcCCcceeeccccccccccccceEEeCC
Confidence            499999999999999998899999999998889999999999999999999876544                 244456


Q ss_pred             cccCCHHHHHHHHhhCCcCCcceeeeCCCCCc
Q psy10189        301 VKFNSLNELVEYHRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       301 ~~f~sl~~lv~~y~~~~~~~~~~~~L~~p~~~  332 (376)
                      ..|+||.+||+||+.+++..   +.|.+|+++
T Consensus        81 ~~F~sl~~LV~~y~~~~l~~---~~L~~P~~r  109 (109)
T d2eyva1          81 QEFDSLPALLEFYKIHYLDT---TTLIEPVSR  109 (109)
T ss_dssp             EEESSHHHHHHHSSSSCSSS---SCCCSBCCS
T ss_pred             eeeCCHHHHHHHHhhCcCCC---CccCCcCCC
Confidence            78999999999999988764   468888864

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=8.9e-24  Score=152.30  Aligned_cols=82  Identities=23%  Similarity=0.512  Sum_probs=71.2

Q ss_pred             cccccccccccChHHHHHhhcC---CCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSN---KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~---~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv  310 (376)
                      +..+|||||.|+|++|+++|..   .++|+||||.|.+.++.|+|||+.+++|+||+|..+.+|.+++.+..|+||.+||
T Consensus         2 l~~~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~LV   81 (86)
T d1rpya_           2 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHVQHLWFQSVFDML   81 (86)
T ss_dssp             GGGSTTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC----CCCHHHHHHHHHHHHHHH
T ss_pred             CccCcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcCCceEEeCCCeeCCHHHHH
Confidence            5678999999999999999975   3679999999988899999999999999999999888887777788999999999


Q ss_pred             HHHhh
Q psy10189        311 EYHRT  315 (376)
Q Consensus       311 ~~y~~  315 (376)
                      +||+.
T Consensus        82 ~~y~t   86 (86)
T d1rpya_          82 RHFHT   86 (86)
T ss_dssp             HHHTC
T ss_pred             HhhcC
Confidence            99973

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=3.4e-23  Score=157.06  Aligned_cols=98  Identities=29%  Similarity=0.581  Sum_probs=84.6

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCC-CCceEEEEEeCCeeEEEEEEEcCCCcEEEe-ccccCCHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLRDSSGKFFLW-VVKFNSLNELVE  311 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~-~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~-~~~f~sl~~lv~  311 (376)
                      +..++||||.|+|++||++|.+.++|+||||.|++. .+.|+||++.++.++||+|... ++.|++. ...|+||.+||+
T Consensus         8 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~-~~~~~~~~~~~F~sl~~LV~   86 (111)
T d1fu6a_           8 LQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHR-DGKYGFSDPLTFNSVVELIN   86 (111)
T ss_dssp             CSCCSSCCSSCCSHHHHHHSSSCSSCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCT-TTCCCTTTTSCCCCTTHHHH
T ss_pred             cCcCcCCCCCCCHHHHHHHhCcCCCCEEEEEeccCCCCccEEEEEecCCceEEEEEEEc-CCeEEECCCcccCCHHHHHH
Confidence            678999999999999999999888999999998755 4679999999999999999764 4566665 578999999999


Q ss_pred             HHhhCCcCCc---ceeeeCCCCCc
Q psy10189        312 YHRTASVSRS---QDVKLRDMVPE  332 (376)
Q Consensus       312 ~y~~~~~~~~---~~~~L~~p~~~  332 (376)
                      ||+++++...   ..+.|++|+++
T Consensus        87 ~y~~~~l~~~~~~l~~~L~~Pv~r  110 (111)
T d1fu6a_          87 HYRNESLAQYNPKLDVKLLYPVSK  110 (111)
T ss_dssp             HHHTTCSTTTCSSCCCCSCCCCCC
T ss_pred             HHhhCcCCccCCCCccccCccccC
Confidence            9999987643   46789999865

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-21  Score=147.29  Aligned_cols=93  Identities=31%  Similarity=0.557  Sum_probs=78.0

Q ss_pred             cccccccChHHHHHhhcC-CCCCceEEeecCCCCCceEEEEEeC----------CeeEEEEEEEcCCCcEEEe-ccccCC
Q psy10189        238 DWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS----------DGVQHFKVLRDSSGKFFLW-VVKFNS  305 (376)
Q Consensus       238 ~w~~g~i~r~~ae~~L~~-~~~G~flvR~s~~~~~~~~ls~~~~----------~~v~h~~I~~~~~~~~~~~-~~~f~s  305 (376)
                      .||||.|+|++||++|+. .++|+||||+|++.+|.|+|||+..          +.++|+.|.... +.|++. ...|+|
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~-~~~~~~~~~~F~s   79 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQE-LKYDVGGGERFDS   79 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEET-TEEESSSSCCBSS
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCC-CceEeCCCcccCC
Confidence            399999999999999974 4799999999998999999999974          458999997654 556665 689999


Q ss_pred             HHHHHHHHhhCCcCCc--ceeeeCCCCC
Q psy10189        306 LNELVEYHRTASVSRS--QDVKLRDMVP  331 (376)
Q Consensus       306 l~~lv~~y~~~~~~~~--~~~~L~~p~~  331 (376)
                      |.+||+||+.+++..+  ..+.|++|+.
T Consensus        80 l~~LV~~y~~~~l~~~~g~~~~L~~Pv~  107 (108)
T d2shpa3          80 LTDLVEHYKKNPMVETLGTVLQLKQPLN  107 (108)
T ss_dssp             HHHHHHHHHHSCCBCTTSCBCCCCEECC
T ss_pred             HHHHHHHHhhCCCCCCCCceEEcCCCCc
Confidence            9999999999987654  3467888863

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.6e-21  Score=144.38  Aligned_cols=84  Identities=33%  Similarity=0.536  Sum_probs=74.3

Q ss_pred             ccccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--------cccC
Q psy10189        233 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--------VKFN  304 (376)
Q Consensus       233 ~~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~--------~~f~  304 (376)
                      .+..+|||||.|+|++|+.+|.+.++|+||||.|...++.|+||++.++.|+|++|...+ +.|.++.        ..|+
T Consensus        11 ~l~~~~Wy~g~i~R~~Ae~~L~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~-~~~~~~~~~~~~~~~~~F~   89 (103)
T d2c9wa2          11 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQD-GKFRLDSIICVKSKLKQFD   89 (103)
T ss_dssp             HHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEET-TEEEECTTTTTGGGCCCBS
T ss_pred             HHhhCCCcCCCCCHHHHHHHhcCCCCCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcC-CeEeeCCccccccCCCccC
Confidence            367889999999999999999998999999999998899999999999999999998754 5566642        4699


Q ss_pred             CHHHHHHHHhhCC
Q psy10189        305 SLNELVEYHRTAS  317 (376)
Q Consensus       305 sl~~lv~~y~~~~  317 (376)
                      ||.+||+||+..+
T Consensus        90 sl~~LI~~y~~~s  102 (103)
T d2c9wa2          90 SVVHLIDYYVQMC  102 (103)
T ss_dssp             CHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998743

>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: GRB2-related adaptor protein 2 (MONA, GRID)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.9e-19  Score=132.08  Aligned_cols=94  Identities=51%  Similarity=0.899  Sum_probs=85.4

Q ss_pred             ccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHh
Q psy10189         53 IEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVE  132 (376)
Q Consensus        53 ve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~  132 (376)
                      |++...+||||.|+|++|+.+|.+.++|+||||.|.+.++.|+||+..++.++|++|....+|.|.+.+..|+|+.+||+
T Consensus         1 ~d~~~~~Wy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~LV~   80 (97)
T d1r1qa_           1 IDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNKLVD   80 (97)
T ss_dssp             CCCSCCTTBCTTCCHHHHHHHHHTSCTTCEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSSCCBSSHHHHHH
T ss_pred             CCcccCCccCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCCEEEEEEecCCeEEEEEEEcCCCeEEeCCCCcCCHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             hhhccccccccccc
Q psy10189        133 YHRTASVSRSQDVK  146 (376)
Q Consensus       133 ~~~~~~~~~~~~~~  146 (376)
                      ||+.+++.......
T Consensus        81 ~y~~~~l~~~~~~~   94 (97)
T d1r1qa_          81 YYRTTSISKQKQVF   94 (97)
T ss_dssp             HTTTSCSCSSSCCC
T ss_pred             HHccCCcCCCCCeE
Confidence            99998876554443

>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 2 (GRB2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.2e-19  Score=129.18  Aligned_cols=92  Identities=68%  Similarity=1.166  Sum_probs=82.5

Q ss_pred             ccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhhh
Q psy10189         57 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYHR  135 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~~  135 (376)
                      +.|||||.|+|++|+.+|.. .++|+||||+|.+.++.|+||+..++.++|++|...+++.|.+....|+|+.+||+||+
T Consensus         2 s~pWy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~LV~~y~   81 (96)
T d1jyra_           2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHR   81 (96)
T ss_dssp             CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTT
T ss_pred             CCCccCCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCceEEEEEEECCCCeEEeCCccCCCHHHHHHHHh
Confidence            46899999999999999965 68999999999999999999999999999999999999999888888999999999999


Q ss_pred             ccccccccccccc
Q psy10189        136 TASVSRSQDVKLR  148 (376)
Q Consensus       136 ~~~~~~~~~~~~~  148 (376)
                      .+++.......++
T Consensus        82 ~~~l~~~~~~~lr   94 (96)
T d1jyra_          82 STSVSRNQQIFLR   94 (96)
T ss_dssp             SSCSCSSSCCCCB
T ss_pred             hCCCCCCCcEEcc
Confidence            9988765554443

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.2e-20  Score=119.09  Aligned_cols=55  Identities=69%  Similarity=1.142  Sum_probs=47.0

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      |+|+|+|||.|++++||+|++||+|.|+++..+++||.++.+|++||||+|||++
T Consensus         1 ~~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             CEEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            8999999999999999999999999999876677899999999999999999985

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.3e-20  Score=141.82  Aligned_cols=75  Identities=28%  Similarity=0.568  Sum_probs=66.8

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVE  311 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~  311 (376)
                      ....+||||.|+|++||++|.+ ++|+||||.|.+.+|.|+|||+.+++|+||+|.+  +|.+++.+..|+||.+||.
T Consensus        32 ~~~~~wyhG~isR~eAe~lL~~-~dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~--~g~~~~~~~~F~sl~eLV~  106 (141)
T d1xa6a2          32 KYYGREFHGIISREQADELLGG-VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFH--DGKHFVGEKRFESIHDLVT  106 (141)
T ss_dssp             CSSCSSEEEECCHHHHHHHHCS-CTTBEEEEECSSSTTCEEEEEEETTEEEECCCEE--SSSEECSSSCCCCSSHHHH
T ss_pred             ccccceeeccCCHHHHHHHHcC-CCCeEEEEecCCCCCCEEEEEEECCEEEEEEEEE--CCCEEECCCeECCHHHHHh
Confidence            3456899999999999999976 5899999999888999999999999999999986  3677888889999999885

>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase 6 (Breast tumor kinase, Brk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4e-18  Score=125.69  Aligned_cols=94  Identities=40%  Similarity=0.706  Sum_probs=80.6

Q ss_pred             ccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHhh
Q psy10189         57 NHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEY  133 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~  133 (376)
                      +++||||.|+|++|+.+|..  .++|+||||+|.+.++.|+||+..++.++|++|....++.|++.+. .|+|+.+||+|
T Consensus         1 sepWy~g~isR~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~   80 (100)
T d1rjaa_           1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVNY   80 (100)
T ss_dssp             CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHHH
T ss_pred             CCCCcCCCCCHHHHHHHHhccCCCCCeEEeecCCCCCCCEEEEEEcCCCceEEEEEECCCCCEEecCCCccCCHHHHHHH
Confidence            46899999999999999975  5899999999999999999999999999999999988888888654 59999999999


Q ss_pred             hhcccccccccccccCCCc
Q psy10189        134 HRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~  152 (376)
                      |+..+...  ...+..|.|
T Consensus        81 y~~~~~~~--~~~L~~Pc~   97 (100)
T d1rjaa_          81 HRAQSLSH--GLRLAAPCR   97 (100)
T ss_dssp             HHHCCTTS--SSCCCSBCC
T ss_pred             HhhCCCCC--ccCcCeecC
Confidence            99877642  234455544

>d1opka2 d.93.1.1 (A:140-240) Abl tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Abl tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.8e-18  Score=126.32  Aligned_cols=86  Identities=41%  Similarity=0.691  Sum_probs=79.0

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEecee-ecchhhhHhh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVK-FNSLNELVEY  133 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~-f~sl~~li~~  133 (376)
                      +...+||||.|+|++|+.+|.+.++|+||||.|.+.++.|+||+..++.+.|++|....+|.|++.+.. |+|+.+||+|
T Consensus         2 Le~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI~~   81 (101)
T d1opka2           2 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHH   81 (101)
T ss_dssp             GGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSTTSCBSSHHHHHHH
T ss_pred             cccCcccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCCCEEEEEEcCcceEEEEeEECCCCCEEeCCCcccCCHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999989988887665 9999999999


Q ss_pred             hhccccc
Q psy10189        134 HRTASVS  140 (376)
Q Consensus       134 ~~~~~~~  140 (376)
                      |...+..
T Consensus        82 y~~~~~~   88 (101)
T d1opka2          82 HSTVADG   88 (101)
T ss_dssp             HTTCCTT
T ss_pred             HhhCCCC
Confidence            9987643

>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Csk homologous kinase Chk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.6e-18  Score=123.78  Aligned_cols=84  Identities=29%  Similarity=0.498  Sum_probs=74.2

Q ss_pred             cccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHhhh
Q psy10189         56 KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEYH  134 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~~  134 (376)
                      ...|||||.|+|++|+.+|.+.++|+||||+|.+.++.|+||+..++.++|++|... ++.+++.+. .|+|+.+||+||
T Consensus         2 s~~PWy~g~isR~eAe~~L~~~~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~~~-~~~~~~~~~~~F~sl~~LI~~y   80 (97)
T d1jwoa_           2 SLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHR-DGHLTIDEAVFFCNLMDMVEHY   80 (97)
T ss_dssp             TTCTTEEESCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEES-SSEESSTTSCCBSCHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHhcCCCCCeEEEEecCCCCccEEEEEEecCceEEEEEEEc-CCcEEecCCcccCCHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999999999865 455666544 499999999999


Q ss_pred             hccccc
Q psy10189        135 RTASVS  140 (376)
Q Consensus       135 ~~~~~~  140 (376)
                      +.++..
T Consensus        81 ~~~~~~   86 (97)
T d1jwoa_          81 SKDKGA   86 (97)
T ss_dssp             HHCCTT
T ss_pred             hhCCCC
Confidence            987654

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.9e-18  Score=108.72  Aligned_cols=52  Identities=21%  Similarity=0.425  Sum_probs=48.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve   54 (376)
                      .++|+|+|+|+.++||+|++||+|.|+++ .+++||.++.+|+.||||+|||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~-~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHK-LLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEEC-CTTSSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEee-cCCceEEEEECCcEeEecHHhCC
Confidence            47999999999999999999999999997 66689999999999999999985

>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-17  Score=123.07  Aligned_cols=84  Identities=38%  Similarity=0.643  Sum_probs=74.0

Q ss_pred             cccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhhhHhhh
Q psy10189         56 KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNELVEYH  134 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~li~~~  134 (376)
                      ...|||||.|+|++|+.+|.+.++|+||||+|.+.++.|+||+..++.++|++|...+. .|++.+ ..|+|+.+||+||
T Consensus         2 ~~~PWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~-~~~~~~~~~F~sl~~LV~~y   80 (101)
T d1k9aa2           2 SLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHAS-KLSIDEEVYFENLMQLVEHY   80 (101)
T ss_dssp             ESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETT-EEESSSSSCBSSHHHHHHHH
T ss_pred             CcCCccCCCCCHHHHHHHHcCCCCCCEEEeccCCCCCCEEEEEEeCCccEEEEEEEcCC-CceecCCcccCCHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999987655 455554 4599999999999


Q ss_pred             hccccc
Q psy10189        135 RTASVS  140 (376)
Q Consensus       135 ~~~~~~  140 (376)
                      +.++..
T Consensus        81 ~~~~~g   86 (101)
T d1k9aa2          81 TTDADG   86 (101)
T ss_dssp             HHCCTT
T ss_pred             hhCCCC
Confidence            987654

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.4e-18  Score=112.20  Aligned_cols=54  Identities=24%  Similarity=0.550  Sum_probs=50.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      +++|||+|+|+.++||+|++||+|.|++. .+++||.++.+|++||||+|||+..
T Consensus         7 ~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~-~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           7 QVEALFSYEATQPEDLEFQEGDIILVLSK-VNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             EEECCSCBCCCSSSBCCBCSSCEEEEEEE-SSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEeEE-cCCCEEEEEECCcEEEEchHHeEEC
Confidence            58999999999999999999999999997 5578999999999999999999854

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=6.8e-18  Score=110.35  Aligned_cols=53  Identities=32%  Similarity=0.684  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      +|+|+|||.++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||++
T Consensus         4 r~~Alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           4 RVRALYDFEAVEDNELTFKHGELITVLDD-SDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEES
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEeEE-eCCCEEEEEECCeEEEEehHhEee
Confidence            79999999999999999999999999997 566899999999999999999984

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=7.1e-18  Score=109.95  Aligned_cols=55  Identities=31%  Similarity=0.540  Sum_probs=50.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .++|||||+|+.++||+|++||+|.|+++.++.+||.++.+|++||||+|||++.
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            4799999999999999999999999998866667889999999999999999853

>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5e-17  Score=124.75  Aligned_cols=85  Identities=28%  Similarity=0.498  Sum_probs=76.9

Q ss_pred             cccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHh
Q psy10189         56 KNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVE  132 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~  132 (376)
                      ...|||||.|+|++|+.+|..  .++|+||||+|++.++.|+||+..++.++|++|....+|.|++.+. .|+||.+||+
T Consensus         3 ~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~i~~~~~F~sl~eLV~   82 (129)
T d1a81a1           3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCH   82 (129)
T ss_dssp             TSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHH
T ss_pred             CCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccceEEEEEEcCCCCeeecCCcccCCHHHHHH
Confidence            356899999999999999976  4889999999999999999999999999999999988888998765 5999999999


Q ss_pred             hhhccccc
Q psy10189        133 YHRTASVS  140 (376)
Q Consensus       133 ~~~~~~~~  140 (376)
                      ||+.++.+
T Consensus        83 ~Y~~~~~g   90 (129)
T d1a81a1          83 YHSQESDG   90 (129)
T ss_dssp             HHTTCCTT
T ss_pred             HHhhCCCC
Confidence            99987643

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=8.2e-18  Score=110.07  Aligned_cols=54  Identities=35%  Similarity=0.812  Sum_probs=49.6

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC-CccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~-~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      +|+|+|+|.|++++||+|++||+|.|+++.+ +++||.++.+|++||||+|||++
T Consensus         3 ~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~   57 (58)
T d1oota_           3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             eEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEE
Confidence            6899999999999999999999999998744 46899999999999999999985

>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-17  Score=121.79  Aligned_cols=84  Identities=29%  Similarity=0.586  Sum_probs=75.5

Q ss_pred             cccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhh
Q psy10189         54 EMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  133 (376)
Q Consensus        54 e~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~  133 (376)
                      ++...+||||.|+|++|+.+|.  .+|+||||.|++.++.|+||+..++.++|++|. ..++.|.+.+..|+|+.+||+|
T Consensus         3 ~l~~~pWyhG~i~R~~Ae~lL~--~~G~FLVR~S~~~~g~~vLSv~~~~~v~H~~I~-~~~~~~~~~~~~F~sl~~LV~~   79 (104)
T d1mila_           3 QLRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLV-DPEGVVRTKDHRFESVSHLISY   79 (104)
T ss_dssp             STTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTEEEEEEEB-CTTSSEECSSCEESSHHHHHHH
T ss_pred             ccccCCCcCCCCCHHHHHHHHh--cCCcEEEEecCCCCCCEEEEEEEccccceEEEE-eCCCEEEeCCeeECCHHHHHHH
Confidence            4667899999999999999995  689999999999999999999999999999995 4677888887889999999999


Q ss_pred             hhccccc
Q psy10189        134 HRTASVS  140 (376)
Q Consensus       134 ~~~~~~~  140 (376)
                      |+.++++
T Consensus        80 y~~~~~~   86 (104)
T d1mila_          80 HMDNHLP   86 (104)
T ss_dssp             HHHHTCC
T ss_pred             HhhCCCC
Confidence            9987654

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.69  E-value=1e-17  Score=108.31  Aligned_cols=52  Identities=23%  Similarity=0.712  Sum_probs=48.9

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      ++|+|||.|+.++||+|++||+|.|+++ .+++||.++.+|++||||+|||+.
T Consensus         3 ~vAl~dy~~~~~~eLs~~~Gd~v~v~~~-~~~~Ww~g~~~g~~G~~P~~yv~~   54 (55)
T d1u06a1           3 VLALYDYQEKSPREVTMKKGDILTLLNS-TNKDWWKVEVNDRQGFVPAAYVKK   54 (55)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEECCCCCCCCcCCccCCCCCEEEEeEE-cCCCEEEEEECCeEEEEeHHHEEE
Confidence            7899999999999999999999999997 666899999999999999999974

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.1e-17  Score=108.83  Aligned_cols=53  Identities=40%  Similarity=0.692  Sum_probs=49.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .|+|+|||.|++++||+|++||+|.|++. .+++||.++.+|++|+||+|||++
T Consensus         3 yarAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~g~~~g~~G~~P~~yve~   55 (57)
T d1utia_           3 WARALYDFEALEEDELGFRSGEVVEVLDS-SNPSWWTGRLHNKLGLFPANYVAP   55 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEeEE-cCCCEEEEEECCcEEEEEHHHEEE
Confidence            58899999999999999999999999997 566899999999999999999985

>d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 4, SOCS-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.5e-17  Score=125.26  Aligned_cols=102  Identities=24%  Similarity=0.315  Sum_probs=83.0

Q ss_pred             eccccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-----
Q psy10189         48 IPSNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-----  122 (376)
Q Consensus        48 vP~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-----  122 (376)
                      || +..++...+||||.|+|++|+.+|.+.++|+||||.|.+.++.|+||+..++.++|++|... ++.|.+...     
T Consensus         2 vp-~~~~l~~~~Wy~g~isR~~Ae~lL~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~-~~~~~l~~~~~~~~   79 (112)
T d2izva2           2 VP-DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQW-NHNFSFDAHDPCVF   79 (112)
T ss_dssp             CT-THHHHHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTEEEEEECEEE-TTEEESCTTCTTSC
T ss_pred             CC-ChHHhccCCCcCCCCCHHHHHHHHccCCCCcEEEeecCCCCCCeEEEEEecCCceEEEEEEe-CCeEEEeecccCcc
Confidence            44 44567788999999999999999999999999999999999999999999999999999875 456666432     


Q ss_pred             eecchhhhHhhhhcccccccccccccCCC
Q psy10189        123 KFNSLNELVEYHRTASVSRSQDVKLRDMV  151 (376)
Q Consensus       123 ~f~sl~~li~~~~~~~~~~~~~~~~~~~~  151 (376)
                      .|+|+.+||+||+.+.........+..|.
T Consensus        80 ~F~sl~~LV~~Y~~~~~~~~~~~llt~P~  108 (112)
T d2izva2          80 HSPDITGLLEHYKDPSACMFFEPLLSTPL  108 (112)
T ss_dssp             CBSSHHHHHHHTCCGGGCCTTSCCCCEEC
T ss_pred             cCCCHHHHHHHHhcccccccCccccCCCC
Confidence            49999999999998776543333344433

>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Ews/fli1 activated transcript 2, Eat2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=8.5e-17  Score=119.20  Aligned_cols=84  Identities=31%  Similarity=0.483  Sum_probs=74.8

Q ss_pred             ccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece------eecchhh
Q psy10189         57 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV------KFNSLNE  129 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~------~f~sl~~  129 (376)
                      +.|||||.|+|++||.+|.. .++|+||||+|++.+|.|+||+..++.++|++|....++.|.+...      .|+|+.+
T Consensus         2 d~PWy~g~isR~~AE~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~~~~~~F~sl~~   81 (103)
T d1i3za_           2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQE   81 (103)
T ss_dssp             CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHH
T ss_pred             CCCcccCCCCHHHHHHHHHhCCCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEeEEcCCCcEEEeccCCcCccccCCHHH
Confidence            46899999999999999854 7899999999999999999999999999999999888888887542      4999999


Q ss_pred             hHhhhhccccc
Q psy10189        130 LVEYHRTASVS  140 (376)
Q Consensus       130 li~~~~~~~~~  140 (376)
                      ||+||+..+.+
T Consensus        82 LV~~y~~~~~g   92 (103)
T d1i3za_          82 LVSKYGKPGQG   92 (103)
T ss_dssp             HHHHTTSSSSS
T ss_pred             HHHHhhhCCCC
Confidence            99999876543

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-17  Score=109.72  Aligned_cols=54  Identities=20%  Similarity=0.515  Sum_probs=50.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      +++|+|||+|++++||+|++||+|.|+++ .+++||.++.+|++||||+|||+..
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~-~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           4 TYRAIADYEKTSGSEMALSTGDVVEVVEK-SESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEECSSCBCCSSTTCCCBCTTCEEEEEEC-CTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             EEEECccCcCCCCCCcCCCCCCEEEEEEe-cCCCeEEEEECCCCcEEcHhHEEEC
Confidence            68999999999999999999999999997 5678999999999999999999853

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.68  E-value=1.7e-17  Score=108.39  Aligned_cols=54  Identities=35%  Similarity=0.717  Sum_probs=49.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .|+|||||.+++++||+|++||+|.|++. .+++||.++.+|++||||+|||++.
T Consensus         4 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           4 FVQALFDFNPQESGELAFKRGDVITLINK-DDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEE-cCCCEEEEEECCeEEEEEhhhEEEC
Confidence            58899999999999999999999999997 5678999999999999999999853

>d1qcfa2 d.93.1.1 (A:146-248) Hemopoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hemopoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.6e-17  Score=119.48  Aligned_cols=93  Identities=34%  Similarity=0.556  Sum_probs=77.6

Q ss_pred             cccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEece-eecchhh
Q psy10189         58 HDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWVV-KFNSLNE  129 (376)
Q Consensus        58 ~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~  129 (376)
                      ++||||.|+|++|+.+|..  .++|+||||+|.+.+|.|+||+..     ++.|+|+.|....++.|++.+. .|+|+.+
T Consensus         1 e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~H~~i~~~~~g~~~~~~~~~F~sl~~   80 (103)
T d1qcfa2           1 EEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQE   80 (103)
T ss_dssp             STTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSSCBSSHHH
T ss_pred             CCccCCCCCHHHHHHHHhhcCCCCCcEEEEccCCCCCCeEEEEEecCCCcCceEEEEEEEEcCCCceeecCCcccCCHHH
Confidence            4799999999999999854  689999999999999999999975     4679999999998998888665 4999999


Q ss_pred             hHhhhhcccccccccccccCCCc
Q psy10189        130 LVEYHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       130 li~~~~~~~~~~~~~~~~~~~~~  152 (376)
                      ||+||+.++.+  ....|..|+|
T Consensus        81 LV~~y~~~~~g--L~~~L~~PC~  101 (103)
T d1qcfa2          81 LVDHYKKGNDG--LCQKLSVPCM  101 (103)
T ss_dssp             HHHHHTSSCTT--SSSCCCSBCC
T ss_pred             HHHHHhhCCCC--CCccCCccCC
Confidence            99999987654  2334454443

>d1rpya_ d.93.1.1 (A:) Adaptor protein Aps {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Adaptor protein Aps
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=8.7e-18  Score=120.44  Aligned_cols=83  Identities=24%  Similarity=0.520  Sum_probs=71.0

Q ss_pred             cccccccccccCCHHHHHHHhcC---CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhh
Q psy10189         54 EMKNHDWYYGRITRADAERLLSN---KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNEL  130 (376)
Q Consensus        54 e~~~~~w~~g~isr~~ae~~l~~---~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~l  130 (376)
                      ++...+||||.|+|++|+.+|..   .++|+||||.|.+.++.|+||+..++.++|++|...+++.++.....|+|+.+|
T Consensus         1 el~~~pWyhg~isR~~Ae~lL~~~~~~~dG~FLvR~S~~~~g~~~Lsv~~~~~v~h~~I~~~~~~~~~~~~~~F~sl~~L   80 (86)
T d1rpya_           1 ELSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHVQHLWFQSVFDM   80 (86)
T ss_dssp             CGGGSTTBCTTCCHHHHHHHHHTTGGGGTTCEEEEECSSSTTCEEEEEEETTEEEEEEC----CCCHHHHHHHHHHHHHH
T ss_pred             CCccCcccCCCCCHHHHHHHHHhCCCCCCceEEEEecCCCCCcEEEEEEECCceEEEEEEEcCCceEEeCCCeeCCHHHH
Confidence            35678999999999999999987   357999999999999999999999999999999988888777666679999999


Q ss_pred             Hhhhhc
Q psy10189        131 VEYHRT  136 (376)
Q Consensus       131 i~~~~~  136 (376)
                      |+||++
T Consensus        81 V~~y~t   86 (86)
T d1rpya_          81 LRHFHT   86 (86)
T ss_dssp             HHHHTC
T ss_pred             HHhhcC
Confidence            999974

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.7e-17  Score=107.72  Aligned_cols=53  Identities=28%  Similarity=0.697  Sum_probs=48.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~   55 (376)
                      .|+|||||.+++++||+|++||+|.|+++ .+++||.++.+|++||||+|||+.
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~   55 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDN-SDPNWWKGACHGQTGMFPRNYVTP   55 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEe-cCCCEEEEEECCeEEEEEHhHEEE
Confidence            37899999999999999999999999987 556899999999999999999974

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-17  Score=110.80  Aligned_cols=55  Identities=29%  Similarity=0.660  Sum_probs=49.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC--CccceeeccCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED--DMNWYRAELDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~--~~~W~~~~~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||+|++++||+|++||+|.|+++.+  +.+||.++.+|++||||+|||++.
T Consensus         6 ~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           6 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            5889999999999999999999999998643  347999999999999999999864

>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=122.56  Aligned_cols=84  Identities=27%  Similarity=0.406  Sum_probs=76.3

Q ss_pred             ccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHhh
Q psy10189         57 NHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVEY  133 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~~  133 (376)
                      ..+||||.|+|++|+.+|..  .++|+||||.|.+.++.|+||+..++.++|++|....+|.|++.+. .|+||.+||+|
T Consensus         5 ~~pWy~g~i~R~~Ae~~L~~~g~~~G~FLVR~S~~~~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~Lv~~   84 (130)
T d2oq1a1           5 HLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEF   84 (130)
T ss_dssp             TCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHHH
T ss_pred             CCCCccCCCCHHHHHHHHHhcCCCCceEEEEecCCCCccEEEEEeeCCceEEEEEEEcCCCceeccCCCCcCCHHHHHHH
Confidence            46899999999999999975  5899999999999999999999999999999999888889998765 59999999999


Q ss_pred             hhccccc
Q psy10189        134 HRTASVS  140 (376)
Q Consensus       134 ~~~~~~~  140 (376)
                      |+.++..
T Consensus        85 Y~~~~~g   91 (130)
T d2oq1a1          85 YSRDPDG   91 (130)
T ss_dssp             HHHCCTT
T ss_pred             HhhCCCC
Confidence            9877643

>d1g83a2 d.93.1.1 (A:142-245) Tyrosine kinase Fyn {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine kinase Fyn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-16  Score=118.20  Aligned_cols=86  Identities=34%  Similarity=0.702  Sum_probs=75.6

Q ss_pred             ccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEe-----CCeeEEEEEEEcCCCcEEEece-eecc
Q psy10189         55 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC-----SDGVQHFKVLRDSSGKFFLWVV-KFNS  126 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~-----~~~v~h~~I~~~~~~~~~~~~~-~f~s  126 (376)
                      +..++||||.|+|++|+++|..  .++|+||||.|.+.++.|+||+..     ++.|+|++|....++.|++.+. .|+|
T Consensus         3 l~~~~Wy~g~i~R~eAe~~L~~~g~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~~v~h~~i~~~~~g~~~~~~~~~F~s   82 (104)
T d1g83a2           3 IQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFET   82 (104)
T ss_dssp             GGGSSSBCTTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECSSSCEEEEEEEEEECTTSCEEETTTEEESS
T ss_pred             cccCCCcCCCCCHHHHHHHHHhcCCCCCcEEEeccCCCCCCeEEEEEEeecCcCCeEEEEEEEEcCCCCEEecCCcccCC
Confidence            4578999999999999999975  579999999999999999999985     4569999999988888888765 4999


Q ss_pred             hhhhHhhhhccccc
Q psy10189        127 LNELVEYHRTASVS  140 (376)
Q Consensus       127 l~~li~~~~~~~~~  140 (376)
                      +.+||+||+.++.+
T Consensus        83 l~~LV~~y~~~~~g   96 (104)
T d1g83a2          83 LQQLVQHYSERAAG   96 (104)
T ss_dssp             HHHHHHHHHHCCTT
T ss_pred             HHHHHHHHhhCCCC
Confidence            99999999987653

>d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: p56-lck tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=119.30  Aligned_cols=95  Identities=37%  Similarity=0.548  Sum_probs=78.7

Q ss_pred             cccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCC-----eeEEEEEEEcCCCcEEEecee-ecch
Q psy10189         56 KNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLRDSSGKFFLWVVK-FNSL  127 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~-----~v~h~~I~~~~~~~~~~~~~~-f~sl  127 (376)
                      ..++||||.|+|++|+++|..  .++|+||||.|++.++.|+||+...+     .|+|+.|....++.|++.+.. |+|+
T Consensus         2 e~~pWy~g~isR~eAe~~L~~~~~~~GtFLVR~S~~~~g~~~lsv~~~~~~~~~~v~h~~i~~~~~~~~~~~~~~~F~sl   81 (105)
T d1lkka_           2 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGL   81 (105)
T ss_dssp             CCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSSH
T ss_pred             ccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEccCCCCCCEEEEEEEcccCCCccEEEEEEEEcCCCCEEecCCcccCCH
Confidence            467899999999999999954  68999999999999999999998643     389999999889999887654 9999


Q ss_pred             hhhHhhhhcccccccccccccCCCc
Q psy10189        128 NELVEYHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       128 ~~li~~~~~~~~~~~~~~~~~~~~~  152 (376)
                      .+||+||+.++.+.  ...|..|+|
T Consensus        82 ~~LV~~y~~~~~gL--~~~L~~Pcp  104 (105)
T d1lkka_          82 HELVRHYTNASDGL--CTRLSRPCQ  104 (105)
T ss_dssp             HHHHHHHHHCCTTS--SSCCCSBCC
T ss_pred             HHHHHHHhhCCCCC--CccCCCcCC
Confidence            99999999876542  334455443

>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.4e-17  Score=120.20  Aligned_cols=83  Identities=36%  Similarity=0.547  Sum_probs=72.0

Q ss_pred             ccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEE-eceeecchhhhHhhh
Q psy10189         57 NHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFL-WVVKFNSLNELVEYH  134 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~-~~~~f~sl~~li~~~  134 (376)
                      +.+||||.|+|.+|+.+|.. ..+|+||||+|.+.++.|+||+..++.++|++|....+ .|++ ....|+|+.+||+||
T Consensus         2 ~~~Wy~g~isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~-~~~~~~~~~F~sl~~LV~~y   80 (109)
T d2shpa2           2 SRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGD-YYDLYGGEKFATLAELVQYY   80 (109)
T ss_dssp             CSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEECSSS-CEEETTSCEESSHHHHHHHH
T ss_pred             CCccccCCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEEeCCcEEEEEEEEcCC-eEEEcCCcccCCHHHHHHHH
Confidence            46899999999999999976 55899999999999999999999999999999986554 5555 455699999999999


Q ss_pred             hccccc
Q psy10189        135 RTASVS  140 (376)
Q Consensus       135 ~~~~~~  140 (376)
                      +.++..
T Consensus        81 ~~~~~~   86 (109)
T d2shpa2          81 MEHHGQ   86 (109)
T ss_dssp             HTCTTC
T ss_pred             HHCCCC
Confidence            977643

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.7e-17  Score=120.68  Aligned_cols=57  Identities=40%  Similarity=0.939  Sum_probs=53.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|||+|.++.++||+|++||+|.|+++.+++||.|+++|+.|+||+|||+.+..
T Consensus        35 ~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~   91 (98)
T d1udla_          35 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD   91 (98)
T ss_dssp             EEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCC
T ss_pred             cEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCC
Confidence            358899999999999999999999999999999999999999999999999988754

>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: The Xlp protein Sap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-16  Score=117.27  Aligned_cols=85  Identities=25%  Similarity=0.423  Sum_probs=75.4

Q ss_pred             cccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec------eeecchh
Q psy10189         56 KNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV------VKFNSLN  128 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~------~~f~sl~  128 (376)
                      .+.+||||.|+|++|+.+|.. ..+|+||||+|.+.++.|+||+..++.+.|++|....++.+.+..      ..|+|+.
T Consensus         2 e~~pwyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~F~sl~   81 (104)
T d1d4ta_           2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIK   81 (104)
T ss_dssp             TTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSSHH
T ss_pred             CcCCccccCCCHHHHHHHHhhCCCCCeEEEEecCCCCCCEEEEEecCCCceEEEEEEcCCCcEEEeeccCCCCcccCCHH
Confidence            467999999999999999976 568999999999999999999999999999999998888887642      3499999


Q ss_pred             hhHhhhhccccc
Q psy10189        129 ELVEYHRTASVS  140 (376)
Q Consensus       129 ~li~~~~~~~~~  140 (376)
                      +||+||+..+..
T Consensus        82 ~Li~~y~~~~~g   93 (104)
T d1d4ta_          82 NLISAFQKPDQG   93 (104)
T ss_dssp             HHHHHHTSSSSS
T ss_pred             HHHHHHhhCCCC
Confidence            999999877643

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.9e-17  Score=111.82  Aligned_cols=57  Identities=46%  Similarity=0.846  Sum_probs=51.0

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc-CCccceeccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-DGKEGLIPSNYIEMKN   57 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~-~g~~G~vP~nyve~~~   57 (376)
                      ++|+|||||.+++++||+|++||+|.|+++.++++||.++. +|++||||+|||+...
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~   64 (71)
T d1k9aa1           7 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   64 (71)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECC
T ss_pred             CEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEcc
Confidence            37999999999999999999999999999766778999985 5899999999998654

>d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 10, GRB10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-16  Score=118.21  Aligned_cols=84  Identities=29%  Similarity=0.539  Sum_probs=70.2

Q ss_pred             ccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC---cEEEec--eeecchhh
Q psy10189         57 NHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG---KFFLWV--VKFNSLNE  129 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~---~~~~~~--~~f~sl~~  129 (376)
                      .++||||.|+|++|+.+|..  .++|+||||+|.+.++.|+||+..++.+.|++|....++   .+.+.+  ..|+|+.+
T Consensus         4 ~~~Wyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl~~   83 (105)
T d1nrva_           4 TQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQ   83 (105)
T ss_dssp             TSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSHHH
T ss_pred             cCcccCCCCCHHHHHHHHhhcCCCCceEEEEeCCCCCCCEEEEEEECCceeEEEEEEecCCCeEEEEECCCCcccCCHHH
Confidence            57899999999999999965  678999999999999999999999999999999875443   344443  34999999


Q ss_pred             hHhhhhccccc
Q psy10189        130 LVEYHRTASVS  140 (376)
Q Consensus       130 li~~~~~~~~~  140 (376)
                      ||+||+.++..
T Consensus        84 LV~~y~~~~~~   94 (105)
T d1nrva_          84 LVDFYQLNKGV   94 (105)
T ss_dssp             HHHHHTTCCTT
T ss_pred             HHHHhccCcCC
Confidence            99999987643

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.66  E-value=2.5e-17  Score=105.63  Aligned_cols=51  Identities=29%  Similarity=0.655  Sum_probs=46.8

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceecccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIE   54 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve   54 (376)
                      ++|||||.|+.++||+|++||+|.|+++ .+++||.++ .+|++||||+|||+
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~-~~~~Ww~~~~~~g~~G~vP~~yv~   52 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDS-SEIHWWRVQDKNGHEGYAPSSYLV   52 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCC-SCSSCEEEECTTSCEEEECGGGEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEE-cCCCeEEEEeCCCCEEEEeHHHEe
Confidence            6899999999999999999999999987 566899998 78899999999986

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-17  Score=114.35  Aligned_cols=57  Identities=33%  Similarity=0.566  Sum_probs=52.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      +|+|||||+++.++||+|++||+|.|+++.++++||.++.+|++||||+|||++.+.
T Consensus        12 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_          12 KAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             EEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCC
Confidence            589999999999999999999999999876677899999999999999999997654

>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Syk tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.2e-16  Score=120.84  Aligned_cols=94  Identities=27%  Similarity=0.446  Sum_probs=77.4

Q ss_pred             cccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHh
Q psy10189         56 KNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVE  132 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~  132 (376)
                      ...+||||.|+|++|+.+|..  .++|+||||.|.+ ++.|+||+..++.++|++|....+|.|++.+. .|+|+.+||+
T Consensus        27 e~~pWyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~-~~~yvLSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sL~~LI~  105 (125)
T d1a81a2          27 EKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVE  105 (125)
T ss_dssp             GGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECSS-SSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCBSCHHHHHH
T ss_pred             ccCCccCCCCCHHHHHHHHHhcCCCCceEEEEecCC-CCCEEEEeeccccceeEeeeEcCCCcEeccCCcccCCHHHHHH
Confidence            356799999999999999854  6899999999855 68899999999999999999988998888755 4999999999


Q ss_pred             hhhcccccccccccccCCCc
Q psy10189        133 YHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~  152 (376)
                      ||+..+..  ..+.+..|+|
T Consensus       106 ~y~~~~~g--L~~~L~~P~~  123 (125)
T d1a81a2         106 HYSYKADG--LLRVLTVPCQ  123 (125)
T ss_dssp             HHTTCCTT--SSSCCCCBCC
T ss_pred             HHhhCCCC--CCccCCeeCC
Confidence            99876533  2234444443

>d1blja_ d.93.1.1 (A:) P55 Blk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: P55 Blk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.8e-16  Score=119.87  Aligned_cols=100  Identities=35%  Similarity=0.518  Sum_probs=81.2

Q ss_pred             eccccccccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEe----CCeeEEEEEEEcCCCcEEEec
Q psy10189         48 IPSNYIEMKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC----SDGVQHFKVLRDSSGKFFLWV  121 (376)
Q Consensus        48 vP~nyve~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~----~~~v~h~~I~~~~~~~~~~~~  121 (376)
                      .|.+-++  .++||||.|+|.+|+.+|..  .++|+||||.|.+.++.|+||+..    +..++|++|....+|.|++..
T Consensus         4 ap~~~l~--~e~Wy~g~isR~eAe~~L~~~~~~~G~FLVR~S~~~~g~~~Lsv~~~~~~~~~v~H~~i~~~~~g~~~l~~   81 (114)
T d1blja_           4 APVETLE--VEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISP   81 (114)
T ss_dssp             CSSCCSC--CSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEET
T ss_pred             CCcCccc--cCCCcCCCCCHHHHHHHHHhcCCCCceEEEeccCCCCCCeEEEEEeeccCCCEEEEEEEEEcCCCCEEecC
Confidence            3555544  67899999999999998854  689999999999999999999974    355899999998888888876


Q ss_pred             e-eecchhhhHhhhhcccccccccccccCCC
Q psy10189        122 V-KFNSLNELVEYHRTASVSRSQDVKLRDMV  151 (376)
Q Consensus       122 ~-~f~sl~~li~~~~~~~~~~~~~~~~~~~~  151 (376)
                      . .|+|+.+||+||+.++...  ...+..|+
T Consensus        82 ~~~F~sl~eLV~~y~~~~~gL--~~~L~~PC  110 (114)
T d1blja_          82 RITFPTLQALVQHYSKKGDGL--CQKLTLPC  110 (114)
T ss_dssp             TEEESSHHHHHHHHHHCCSSS--SSCCCCCS
T ss_pred             CceECCHHHHHHHHhhCCCCC--CccCCccC
Confidence            5 4999999999999876542  33444444

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4e-17  Score=119.77  Aligned_cols=56  Identities=45%  Similarity=0.875  Sum_probs=51.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      +|+|||||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||++...
T Consensus        36 ~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~-~~~gWw~g~~~g~~G~~P~nyVe~~~~   91 (98)
T d1udla_          36 QVIAMYDYAANNEDELSFSKGQLINVMNK-DDPDWWQGEINGVTGLFPSNYVKMTTD   91 (98)
T ss_dssp             EEEESSCCCCSSTTSCCCCTTCEEEECBC-CSSSEEBCBSSSCBCCEETTSEEECCC
T ss_pred             EEEEccCCCCCCCCEeeEcCCCEEEEeEe-cCCCeEEEEECCeEEEEchHHEEECCC
Confidence            58999999999999999999999999987 567899999999999999999987543

>d1o48a_ d.93.1.1 (A:) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.9e-16  Score=117.10  Aligned_cols=86  Identities=41%  Similarity=0.757  Sum_probs=75.0

Q ss_pred             ccccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCC-----eeEEEEEEEcCCCcEEEece-eecc
Q psy10189         55 MKNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSD-----GVQHFKVLRDSSGKFFLWVV-KFNS  126 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~-----~v~h~~I~~~~~~~~~~~~~-~f~s  126 (376)
                      +..++||||.|+|++|+.+|..  .++|+||||+|.+.++.|+||+...+     .|.|+.|....+|.|++.+. .|+|
T Consensus         2 l~~~~Wy~g~i~R~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~i~h~~i~~~~~g~~~~~~~~~F~s   81 (106)
T d1o48a_           2 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNS   81 (106)
T ss_dssp             GGGSTTEEESCCHHHHHHHHCCTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSEESS
T ss_pred             cccCCccCCCCCHHHHHHHHHhcCCCCCcEEEEcccCCCCCEEEEEEecccCcccceEEEEEEEecCCCEEEcCCeeECC
Confidence            4568999999999999999965  57999999999999999999998643     57899998888999988765 5999


Q ss_pred             hhhhHhhhhccccc
Q psy10189        127 LNELVEYHRTASVS  140 (376)
Q Consensus       127 l~~li~~~~~~~~~  140 (376)
                      +.+||+||+.++..
T Consensus        82 l~eLV~~y~~~~~g   95 (106)
T d1o48a_          82 LQQLVAYYSKHADG   95 (106)
T ss_dssp             HHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhCCCC
Confidence            99999999987653

>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine-protein kinase zap-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.4e-16  Score=119.53  Aligned_cols=94  Identities=31%  Similarity=0.550  Sum_probs=78.6

Q ss_pred             cccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece-eecchhhhHh
Q psy10189         56 KNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV-KFNSLNELVE  132 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~-~f~sl~~li~  132 (376)
                      ...+||||.|+|++|+.+|..  .++|+||||.|.+ ++.|+||+..++.++|++|.....|.|++... .|.|+.+||+
T Consensus        27 e~~pWyhg~isR~eAe~lL~~~~~~dGtFLVR~S~~-~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~  105 (124)
T d2oq1a2          27 ERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVE  105 (124)
T ss_dssp             GGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECSS-TTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHHHH
T ss_pred             cCCCCccCCCCHHHHHHHHhhcCCCCceEEeEecCC-CCCEEEEeecCCceEEEEEEECCCCCEEeCCCcccCCHHHHHH
Confidence            356899999999999999976  5789999999965 78899999999999999999988888888665 4999999999


Q ss_pred             hhhcccccccccccccCCCc
Q psy10189        133 YHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~  152 (376)
                      ||+..+..  ....+..|.|
T Consensus       106 ~y~~~~~g--L~~~L~~PcP  123 (124)
T d2oq1a2         106 YLKLKADG--LIYCLKEACP  123 (124)
T ss_dssp             HHHHCCTT--SSSCCCSBCC
T ss_pred             HHhhCCCC--CcccCCCcCc
Confidence            99987643  2334444444

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3.1e-17  Score=106.86  Aligned_cols=54  Identities=19%  Similarity=0.502  Sum_probs=47.2

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~   55 (376)
                      ++.|||||+|+.++||+|++||+|.|+++.++++||.+.  .+|++||||+|||++
T Consensus         1 ~aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           1 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CCEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            468999999999999999999999999886666677654  689999999999974

>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Crk proto-oncogen
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.7e-16  Score=116.90  Aligned_cols=82  Identities=33%  Similarity=0.641  Sum_probs=72.2

Q ss_pred             ccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCC-----------------cEEEec
Q psy10189         59 DWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSG-----------------KFFLWV  121 (376)
Q Consensus        59 ~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~-----------------~~~~~~  121 (376)
                      .||||.|+|++|+.+|.+.++|+||||+|.+.++.|+||+..++.++|++|.....+                 .+...+
T Consensus         1 sWy~g~isR~~Ae~lL~~~~~G~FLVR~S~~~~~~~~LS~~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (109)
T d2eyva1           1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGD   80 (109)
T ss_dssp             TSCCBCCCHHHHHHHCSSCSTTCEEEECCCSSSSCEEEEEEETTEEEEEEEECCCCSSCCCSSSSCCCCSCCCCCEEETT
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCeEEeeecCCCCCCEEEEEEECCEEEEEEEEEcCCcceeeccccccccccccceEEeCC
Confidence            499999999999999998999999999999999999999999999999999876544                 244445


Q ss_pred             eeecchhhhHhhhhccccc
Q psy10189        122 VKFNSLNELVEYHRTASVS  140 (376)
Q Consensus       122 ~~f~sl~~li~~~~~~~~~  140 (376)
                      ..|+|+.+||+||+.+.+.
T Consensus        81 ~~F~sl~~LV~~y~~~~l~   99 (109)
T d2eyva1          81 QEFDSLPALLEFYKIHYLD   99 (109)
T ss_dssp             EEESSHHHHHHHSSSSCSS
T ss_pred             eeeCCHHHHHHHHhhCcCC
Confidence            5799999999999987764

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=7e-17  Score=105.82  Aligned_cols=54  Identities=33%  Similarity=0.661  Sum_probs=48.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~   56 (376)
                      .|+|+|||.++.++||+|++||+|.|+++ .+++||.++  .+|++||||+|||++.
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEF-VDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEE-cCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            38999999999999999999999999997 566899887  4789999999999864

>d2fcia1 d.93.1.1 (A:1-105) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phospholipase C-gamma-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=1.4e-16  Score=118.06  Aligned_cols=92  Identities=29%  Similarity=0.588  Sum_probs=75.4

Q ss_pred             cccccccccCCHHHHHHHhcCC-CCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhhh
Q psy10189         56 KNHDWYYGRITRADAERLLSNK-HEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEYH  134 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~~-~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~~  134 (376)
                      ...+||||.|+|++|+.+|... .+|+||||.| +.++.|+||+..++.++|++|.. .++.|.+....|.+|.+||+||
T Consensus         7 e~~~Wy~g~i~R~eAe~lL~~~~~~G~FLVR~S-~~~~~yvLSv~~~~~v~H~~I~~-~~~~~~~~~~~F~sl~~LV~~y   84 (105)
T d2fcia1           7 ESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR-NEPNSYAISFRAEGKIKHCRVQQ-EGQTVMLGNSEFDSLVDLISYY   84 (105)
T ss_dssp             SSSCCCCSSSCSHHHHHHHHHSSSSCCEEEEEC-SSTTCEEEEEEETTEECCCEEBC-CSSCEECSSSEESTTHHHHHHH
T ss_pred             ccCCCccCCCCHHHHHHHHHhCCCCCeEEEEec-CCCCCEEEEEEeccccEEEEEEe-cCCeEecCCcccCCHHHHHHHH
Confidence            4578999999999999999875 4899999999 56889999999999999999975 3455666666799999999999


Q ss_pred             hcccccccccccccCCC
Q psy10189        135 RTASVSRSQDVKLRDMV  151 (376)
Q Consensus       135 ~~~~~~~~~~~~~~~~~  151 (376)
                      +.+++...  ..|+.|.
T Consensus        85 ~~~~~~~~--~~L~~P~   99 (105)
T d2fcia1          85 EKHPLYRK--MKLRYPI   99 (105)
T ss_dssp             HHSCCSTT--CSSCCCC
T ss_pred             hhCCCCCc--cCCCCCC
Confidence            98876532  3344444

>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Hematopoietic SH2 domain containing protein HSH2D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.9e-16  Score=115.83  Aligned_cols=96  Identities=33%  Similarity=0.506  Sum_probs=80.5

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEece--eecchhhhHh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVV--KFNSLNELVE  132 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~--~f~sl~~li~  132 (376)
                      ....+||||.|+|++|+.+|.+.++|+||||.|.+.++ |+|++..++.++|+.|....+|.|++.+.  .|.|+.+||+
T Consensus         6 ~~~~pWy~g~isR~eAe~lL~~~~~G~FLvR~S~~~~~-y~Lsv~~~~~~~h~~I~~~~~g~~~~~~~~~~F~sl~eLV~   84 (106)
T d2cs0a1           6 DGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVT   84 (106)
T ss_dssp             SSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHHHH
T ss_pred             CCCCCCccCCCCHHHHHHHHcCCCCCcEEEEecCCCCC-EEEEEEecCCceeEEEEEcCCCCEEEecCCccCCCHHHHHH
Confidence            44578999999999999999999999999999976665 99999999999999999999998887654  4999999999


Q ss_pred             hhhcccccccccccccCCCc
Q psy10189        133 YHRTASVSRSQDVKLRDMVP  152 (376)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~  152 (376)
                      ||+..++.... ..+..|++
T Consensus        85 ~y~~~~~~~~~-~~L~~P~~  103 (106)
T d2cs0a1          85 FHQQKPIEPRR-ELLTQPCR  103 (106)
T ss_dssp             HHTTSCCSSCC-CCCCSBCC
T ss_pred             HHHHCCCCCcc-CcccCcCC
Confidence            99998764322 23444443

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=9.4e-17  Score=104.52  Aligned_cols=52  Identities=38%  Similarity=0.785  Sum_probs=47.6

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      ++|+|||++++++||+|++||+|.|+++ .+++||.++ .+|++||||+|||+.
T Consensus         4 v~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           4 VRALFDFNGNDEEDLPFKKGDILRIRDK-PEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEECCCCCcCCcCCcCCCCCCEEEEEEE-cCCCeEEEEECCCCEEEEcHHHeEE
Confidence            6899999999999999999999999997 566899998 678999999999974

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-16  Score=109.97  Aligned_cols=56  Identities=25%  Similarity=0.595  Sum_probs=50.3

Q ss_pred             CEEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceecccccccccc
Q psy10189          1 MEAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         1 ~~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~~   58 (376)
                      ++++|||||+++.++||+|++||+|.|+++ + ++||.++.+|++||||+|||++...
T Consensus        11 ~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~-~~ww~g~~~g~~G~fP~~yve~i~~   66 (74)
T d1j3ta_          11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-Q-ENWWFGEVHGGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE-C-SSEEEEESTTCCCEEEGGGEEECCC
T ss_pred             eEEEEccCCCCCCCCEecCCCCCEEEEEEc-c-CCeEEEEECCcEEEEchhhEEECCC
Confidence            479999999999999999999999999986 4 3688999999999999999997543

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.4e-17  Score=108.97  Aligned_cols=55  Identities=33%  Similarity=0.650  Sum_probs=49.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      +++|+|+|+|++++||+|++||+|.|+++ .+++||.++ .+|++||||+|||+...
T Consensus        10 ~v~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~g~~G~vP~~yv~~~~   65 (67)
T d1awwa_          10 KVVALYDYMPMNANDLQLRKGDEYFILEE-SNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             EEEBSSCCCCSSSSSCCCCSSCEEECCCC-CSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEEEE-cCCCeEEEEECCCCEEEEcHHHeEECc
Confidence            68999999999999999999999999987 556899997 68999999999998654

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.7e-16  Score=107.10  Aligned_cols=54  Identities=41%  Similarity=0.713  Sum_probs=48.9

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      ++|||||+|++++||+|++||+|.|+++ .+.+||.++ .+|++||||+|||+...
T Consensus         5 v~Alydf~a~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~g~~G~~P~~yV~~~~   59 (67)
T d1gl5a_           5 VVAMYDFQATEAHDLRLERGQEYIILEK-NDLHWWRARDKYGSEGYIPSNYVTGKK   59 (67)
T ss_dssp             EEECSCBCCSSSSBCCBCTTCEEEEEEC-SSSSEEEEECSSSCEEEEETTSEESST
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEe-cCCCcEEEEECCCCEEEEEhHHeEEec
Confidence            7899999999999999999999999997 556899997 67899999999998654

>d2qmsa1 d.93.1.1 (A:420-532) Growth factor receptor-bound protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Growth factor receptor-bound protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.5e-16  Score=116.72  Aligned_cols=85  Identities=31%  Similarity=0.624  Sum_probs=71.2

Q ss_pred             cccccccccCCHHHHHHHhcC--CCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEc-CCCcEE--Eec--eeecchh
Q psy10189         56 KNHDWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRD-SSGKFF--LWV--VKFNSLN  128 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~--~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~-~~~~~~--~~~--~~f~sl~  128 (376)
                      ..++||||.|+|++|+.+|..  .++|+||||+|.+.++.|+||+..++.++|++|... ..+.+.  +.+  ..|+|+.
T Consensus         8 ~~~~Wy~g~isR~~Ae~lL~~~g~~dG~FLvR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~F~sl~   87 (113)
T d2qmsa1           8 RTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLL   87 (113)
T ss_dssp             TCCTTEEEEBCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEEESSSCEEEESSTTSSCBSSHH
T ss_pred             cCCCccCCCCCHHHHHHHHhccCCCCccEEEEeccCCCCCEEEEEEeCCeEEEEEEEEeCCCCeEEEEecCCCcccCCHH
Confidence            356899999999999999974  689999999999999999999999999999999764 334433  333  2499999


Q ss_pred             hhHhhhhccccc
Q psy10189        129 ELVEYHRTASVS  140 (376)
Q Consensus       129 ~li~~~~~~~~~  140 (376)
                      +||+||+.++..
T Consensus        88 ~LI~~y~~~~~~   99 (113)
T d2qmsa1          88 QLVEFHQLNRGI   99 (113)
T ss_dssp             HHHHHHTTCCTT
T ss_pred             HHHHHhccCCCC
Confidence            999999987653

>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=3.8e-16  Score=116.63  Aligned_cols=85  Identities=32%  Similarity=0.473  Sum_probs=73.9

Q ss_pred             cccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEecee-ecchhhhHhhh
Q psy10189         56 KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVK-FNSLNELVEYH  134 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~-f~sl~~li~~~  134 (376)
                      ...+||||.|+|++|+.+|.+.++|+||||.| +.++.|+||+..++.++|++|...++|.++..... |.|+.+||+||
T Consensus         7 ~~~~Wy~g~isR~eAe~lL~~~~~G~FLVR~S-~~~~~y~Lsv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LI~~Y   85 (107)
T d1qada_           7 DEKTWNVGSSNRNKAENLLRGKRDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELVLHY   85 (107)
T ss_dssp             SGGGTEEEECCHHHHHHHHTTCCTTEEEEEEC----CCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHHHHH
T ss_pred             CCCcccCCCCCHHHHHHHHcCCCCCcEEEEec-CCCCCEEEEEEecCCeEEEEEEECCCCeEEcCCCCccCCHHHHHHHH
Confidence            46789999999999999999999999999999 45789999999999999999999888777665544 99999999999


Q ss_pred             hcccccc
Q psy10189        135 RTASVSR  141 (376)
Q Consensus       135 ~~~~~~~  141 (376)
                      +.+++..
T Consensus        86 ~~~~l~~   92 (107)
T d1qada_          86 QHTSLVQ   92 (107)
T ss_dssp             HHSCGGG
T ss_pred             HhCcccc
Confidence            9887654

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.1e-16  Score=109.70  Aligned_cols=57  Identities=25%  Similarity=0.382  Sum_probs=49.2

Q ss_pred             EEEEeecCCCC-CCCCccccCCCEEEEEeccCCccceeecc--CCccceecccccccccc
Q psy10189          2 EAIAKHDFNAT-AEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~-~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~~~~   58 (376)
                      +|+|||||+|. +++||+|++||+|.|+.+.++++||.++.  +|++||||+|||++.+.
T Consensus         9 ~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           9 KVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             EEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             EEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            68999999985 57899999999999997656678999874  58899999999997654

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.9e-16  Score=103.59  Aligned_cols=52  Identities=40%  Similarity=0.749  Sum_probs=46.2

Q ss_pred             EEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccc
Q psy10189          3 AIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEM   55 (376)
Q Consensus         3 ~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~   55 (376)
                      ++|+|||+|++++||+|++||+|.|+++ .+++||.++  .+|++||||+|||++
T Consensus         3 ~vAl~dy~a~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~~g~~G~vP~~yv~p   56 (57)
T d1efna_           3 FVALYDYEAITEDDLSFHKGEKFQILNS-SEGDWWEARSLTTGETGYIPSNYVAP   56 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEEC-SSCSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEe-cCCCCEEEEECCCCCEEEEeHHHeEE
Confidence            7899999999999999999999999987 555677776  578999999999974

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-16  Score=107.75  Aligned_cols=54  Identities=24%  Similarity=0.578  Sum_probs=49.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +++|+|+|+++.++||+|++||+|.|+++ + ++||.++.+|++||||+|||++..
T Consensus        10 ~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~-~~Ww~~~~~g~~G~vP~~yv~~~~   63 (69)
T d1uhfa_          10 EYIALYPYSSVEPGDLTFTEGEEILVTQK-D-GEWWTGSIGDRSGIFPSNYVKPKD   63 (69)
T ss_dssp             EEECSSCBCCSSSSBCCBCTTCEEEECEE-E-TTEEEECSTTCCEEECGGGCEECC
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEe-c-CCEEEEEECCcEEEEchhhEEECC
Confidence            68999999999999999999999999986 3 369999999999999999999654

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.3e-16  Score=103.52  Aligned_cols=55  Identities=33%  Similarity=0.597  Sum_probs=48.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~~   58 (376)
                      .++|+|||.|++++||+|++||+|.|++. .+ +||.+. .+|++||||+|||++...
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~~-~~-~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RR-QWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GC-CEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEEE-cC-CcEEEEEcCCCEEEECHHHeEECCC
Confidence            48999999999999999999999999986 33 577776 789999999999997654

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-16  Score=110.86  Aligned_cols=55  Identities=31%  Similarity=0.640  Sum_probs=50.4

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++.+|++||||+|||++..
T Consensus        12 ~~rAlydy~a~~~~eLs~~~Gd~i~v~~~-~~~~W~~g~~~g~~G~~P~~yv~~i~   66 (76)
T d1ujya_          12 IVKARFNFKQTNEDELSVCKGDIIYVTRV-EEGGWWEGTLNGRTGWFPSNYVREIK   66 (76)
T ss_dssp             EEECCSCBCCSSTTSCCBCSSCCEEESSC-CSSSCEEEEETTEEEEECTTTSEECC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEeEE-cCCCEEEEEECCcEEEEchHHEEECC
Confidence            47899999999999999999999999987 55689999999999999999998654

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=2.3e-16  Score=106.34  Aligned_cols=54  Identities=35%  Similarity=0.672  Sum_probs=47.0

Q ss_pred             EEEEeecCCCCCCC-CccccCCCEEEEEeccC----Cccceeec-cCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAED-ELSFRKSQVLKILNMED----DMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~-eLsf~~Gd~i~v~~~~~----~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      .|+|||||.|++++ ||+|++||+|.|+++.+    +++||.++ .+|++||||+|||++
T Consensus         7 ~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~   66 (67)
T d2v1ra1           7 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI   66 (67)
T ss_dssp             EEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEE
T ss_pred             EEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEE
Confidence            48999999998765 99999999999998743    35899998 589999999999985

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.5e-16  Score=105.45  Aligned_cols=54  Identities=35%  Similarity=0.669  Sum_probs=48.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~   56 (376)
                      .++|+|||+++.++||+|++||+|.|+++ .+++||.++  .+|++||||+|||+..
T Consensus         4 ~~vAlydf~~~~~~eLs~~~Gd~i~v~~~-~~~~Ww~~~~~~~g~~G~vP~~yv~~~   59 (64)
T d1fmka1           4 TFVALYDYESRTETDLSFKKGERLQIVNN-TEGDWWLAHSLSTGQTGYIPSNYVAPS   59 (64)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCC-CSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             EEEECccCCCcCcCCcCCCCCCEEEEEEE-cCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            68999999999999999999999999987 455788876  4689999999999854

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-16  Score=114.00  Aligned_cols=56  Identities=30%  Similarity=0.605  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCC------CCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATA------EDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~------~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|||+++.      ++||+|++||+|.|+.+.+++|||.+. .+|++||||+|||+...
T Consensus        19 ~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~   81 (96)
T d1wiea_          19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQ   81 (96)
T ss_dssp             EEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCC
T ss_pred             EEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECC
Confidence            589999998754      589999999999999876777899887 68999999999999654

>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Suppressor of cytokine signaling 2, SOCS-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.9e-16  Score=114.47  Aligned_cols=87  Identities=32%  Similarity=0.507  Sum_probs=74.4

Q ss_pred             cccccccccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEec--------
Q psy10189         50 SNYIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV--------  121 (376)
Q Consensus        50 ~nyve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~--------  121 (376)
                      .+..++...+||||.|+|++|+.+|.+.++|+||||.|.+.++.|+||+..++.++|++|.... +.|.+..        
T Consensus         7 ~~~~~l~~~~Wy~g~i~R~~Ae~~L~~~~~GtFLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~~-~~~~~~~~~~~~~~~   85 (103)
T d2c9wa2           7 KALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQD-GKFRLDSIICVKSKL   85 (103)
T ss_dssp             HHHHHHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEEEEEEEEEET-TEEEECTTTTTGGGC
T ss_pred             HHHHHHhhCCCcCCCCCHHHHHHHhcCCCCCceEEeccCCCCCCEEEEEEECCEEEEEEEEEcC-CeEeeCCccccccCC
Confidence            3344567789999999999999999999999999999999999999999999999999998654 4455532        


Q ss_pred             eeecchhhhHhhhhcc
Q psy10189        122 VKFNSLNELVEYHRTA  137 (376)
Q Consensus       122 ~~f~sl~~li~~~~~~  137 (376)
                      ..|+|+.+||+||...
T Consensus        86 ~~F~sl~~LI~~y~~~  101 (103)
T d2c9wa2          86 KQFDSVVHLIDYYVQM  101 (103)
T ss_dssp             CCBSCHHHHHHHHHHH
T ss_pred             CccCCHHHHHHHHHhh
Confidence            3499999999999764

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.6e-16  Score=108.56  Aligned_cols=56  Identities=41%  Similarity=0.692  Sum_probs=50.3

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC---CccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~---~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .++|||||.|+.++||+|++||+|.|+++.+   +++||.++.+|++||||+|||++..
T Consensus        15 ~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~   73 (79)
T d1uhca_          15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE   73 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECC
Confidence            3899999999999999999999999998632   4689999999999999999998654

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.8e-16  Score=118.80  Aligned_cols=55  Identities=20%  Similarity=0.396  Sum_probs=51.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +++|||||.++.++||+|++||+|.|+++ .+++||.|+.+|++||||+|||+...
T Consensus        16 ~~~alydy~a~~~dELs~~~Gd~i~Vl~~-~~~gWw~g~~~g~~G~~P~~yv~~~~   70 (118)
T d1ng2a2          16 PYVAIKAYTAVEGDEVSLLEGEAVEVIHK-LLDGWWVIRKDDVTGYFPSMYLQKSG   70 (118)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTSEEEEEETTEEEEEEGGGEEETT
T ss_pred             EEEECcCCCCCCCCEecCCCCCEEEEeEe-cCCCeEEEEECCeEEEEehhhEEECC
Confidence            58999999999999999999999999997 66799999999999999999998654

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-16  Score=105.04  Aligned_cols=53  Identities=28%  Similarity=0.521  Sum_probs=47.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~   55 (376)
                      .++|+|||+|++++||+|++||+|.|+++ .+++||.+.  .+|++||||+|||++
T Consensus         5 ~~rAl~df~~~~~~eLs~~~Gd~i~v~~~-~~~~W~~~~~~~~g~~G~vP~nyve~   59 (60)
T d1arka_           5 IFRAMYDYMAADADEVSFKDGDAIINVQA-IDEGWMYGTVQRTGRTGMLPANYVEA   59 (60)
T ss_dssp             CEECCSCCCCSSSSBCCCCTTCEECCSEE-CSSSEEEEECTTTCCEEEEETTTCEE
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEEEE-cCCCEEEEEECCCCCEEEEcHHHEEE
Confidence            48999999999999999999999999997 556788877  478999999999985

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.4e-16  Score=106.40  Aligned_cols=57  Identities=25%  Similarity=0.621  Sum_probs=50.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC-Cccceeec-cCCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED-DMNWYRAE-LDGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~-~~~W~~~~-~~g~~G~vP~nyve~~~~   58 (376)
                      .++|||||+++.++||+|++||+|.|+++.+ +++||.++ .+|+.||||+|||++...
T Consensus         8 ~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~   66 (71)
T d1u5sa1           8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   66 (71)
T ss_dssp             EEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCC
T ss_pred             EEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCC
Confidence            5899999999999999999999999998633 35799997 789999999999997543

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.4e-16  Score=111.48  Aligned_cols=56  Identities=18%  Similarity=0.329  Sum_probs=50.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC---CccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED---DMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~---~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      .|+|+|+|+++.++||+|++||+|.||++.+   ..+||.++.+|++||||+|||++..
T Consensus        19 ~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~   77 (92)
T d1ug1a_          19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN   77 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECC
T ss_pred             EEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecC
Confidence            4899999999999999999999999999743   3679999999999999999999654

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4e-16  Score=113.46  Aligned_cols=56  Identities=25%  Similarity=0.475  Sum_probs=50.8

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc-CCccceeeccCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME-DDMNWYRAELDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~-~~~~W~~~~~~g~~G~vP~nyve~~~   57 (376)
                      +|+|||||.+++++||+|++||+|.|+++. .+++||.++.+|++||||+|||++..
T Consensus         7 ~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~   63 (93)
T d1uffa_           7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMP   63 (93)
T ss_dssp             CEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECC
T ss_pred             EEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECC
Confidence            589999999999999999999999999874 35689999999999999999998654

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=9.9e-16  Score=105.69  Aligned_cols=56  Identities=18%  Similarity=0.311  Sum_probs=49.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc------CCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL------DGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~------~g~~G~vP~nyve~~~~   58 (376)
                      +++|||||.+..++||+|++||+|.|+++ .+++||.++.      +|++||||+|||++...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~-~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           9 TMTVIKDYYALKENEICVSQGEVVQVLAV-NQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             EEECCSCBCCCSSSCCCBCTTCEEEEEEE-CTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             EEEEeEEECCCCCCCccCccCCEEEEEEE-cCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            68999999999999999999999999997 5568998862      47899999999997654

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-15  Score=102.24  Aligned_cols=54  Identities=33%  Similarity=0.647  Sum_probs=45.9

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec--cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE--LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~--~~g~~G~vP~nyve~~~   57 (376)
                      .++|||||.++.++||+|++||+|.|+++ ++ +||.+.  .+|++||||+|||+...
T Consensus         6 ~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~-~ww~~~~~~~g~~G~vP~~yv~~~~   61 (65)
T d1qcfa1           6 IVVALYDYEAIHHEDLSFQKGDQMVVLEE-SG-EWWKARSLATRKEGYIPSNYVARVD   61 (65)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CT-TEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEECCcCCCCCcCccCCCCCCEEEEEEE-CC-CCEEEEEccCCCEEEEchHHeEECc
Confidence            58899999999999999999999999986 44 355554  57899999999998653

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-15  Score=106.49  Aligned_cols=56  Identities=21%  Similarity=0.473  Sum_probs=49.0

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeecc-----CCccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAEL-----DGKEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~-----~g~~G~vP~nyve~~~~   58 (376)
                      .|+|+|+|+++.++||+|++||+|.|+++ .+++||.++.     .+++||||+|||++...
T Consensus         9 ~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~-~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~   69 (80)
T d1ue9a_           9 IAQVTSAYVASGSEQLSLAPGQLILILKK-NTSGWWQGELQARGKKRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             EEEECSCCCCCSTTBCCCCTTCEEEEEEE-CSSSEEEEEECSCCSSCCEEEEETTSEEECCS
T ss_pred             EEEECcCCCCCCCCEeeEcCCCEEEEEEE-eCCCeEEEEEccCCCCCCEeEEEheeEEECCC
Confidence            58999999999999999999999999997 5668999874     35689999999996543

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-15  Score=98.02  Aligned_cols=54  Identities=54%  Similarity=1.064  Sum_probs=51.4

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.++||+|++||++.|+++.+++||.|+.+|+.|+||++||+|+
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            468999999999999999999999999999999999999999999999999874

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.6e-15  Score=98.54  Aligned_cols=54  Identities=46%  Similarity=0.933  Sum_probs=51.7

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.++||+|.+||.+.|++..+++||.|+.+|+.|+||++||+++
T Consensus         3 yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           3 WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            578999999999999999999999999999999999999999999999999975

>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Itk/tsk protein tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.2e-15  Score=109.98  Aligned_cols=85  Identities=28%  Similarity=0.626  Sum_probs=69.8

Q ss_pred             ccccccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeC------CeeEEEEEEEcCCC--cEEEece-ee
Q psy10189         55 MKNHDWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS------DGVQHFKVLRDSSG--KFFLWVV-KF  124 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~------~~v~h~~I~~~~~~--~~~~~~~-~f  124 (376)
                      +...+||||.|+|++|+.+|.. .++|+||||+|++ ++.|+||+...      ..++|++|....++  .|++... .|
T Consensus         3 l~~~~Wy~g~isR~eAe~lL~~~~~~G~FLVR~S~~-~g~y~LSv~~~~~~~~~~~i~h~~I~~~~~~~~~~~~~~~~~F   81 (108)
T d1luia_           3 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVF   81 (108)
T ss_dssp             CTTSTTBCTTCCHHHHHHHHHHHCCTTEEEEEECCT-TTCEEEEEECSCCTTTCSCEEEEECEECCCSSCCEESSSSCCB
T ss_pred             cccCCCcCCCCCHHHHHHHHHhcCCCCeEEEEecCC-CCCEEEEEEecCCcccCCceeEEEEEEecCCCceeecCCCccc
Confidence            4567899999999999999965 6899999999965 88999999863      45899999876555  4666554 49


Q ss_pred             cchhhhHhhhhccccc
Q psy10189        125 NSLNELVEYHRTASVS  140 (376)
Q Consensus       125 ~sl~~li~~~~~~~~~  140 (376)
                      +|+.+||+||+.++..
T Consensus        82 ~sl~~LV~~y~~~~~~   97 (108)
T d1luia_          82 DSIPLLIQYHQYNGGG   97 (108)
T ss_dssp             SSHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHhhCCCC
Confidence            9999999999987653

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.56  E-value=1.6e-15  Score=98.85  Aligned_cols=55  Identities=51%  Similarity=1.130  Sum_probs=52.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|||+|.++.+++|+|++||+|.|++..+++||.|+.+|+.|+||++||+|+
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            3578999999999999999999999999999999999999999999999999985

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.8e-15  Score=100.62  Aligned_cols=53  Identities=30%  Similarity=0.602  Sum_probs=44.7

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyve~   55 (376)
                      .++|+|||.++.++||+|++||+|.|+++ .++|||... .+|++||||+|||+.
T Consensus         8 ~~~al~dy~a~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           8 LVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEE-cCCCEEEEeccCCeEeEEcHHHEEe
Confidence            58999999999999999999999999997 443444333 679999999999973

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.9e-16  Score=105.32  Aligned_cols=56  Identities=34%  Similarity=0.605  Sum_probs=48.5

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccCCccceeeccCC-ccceecccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMEDDMNWYRAELDG-KEGLIPSNYIEMKNH   58 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~~g-~~G~vP~nyve~~~~   58 (376)
                      +|+|||+|++++++||+|++||+|.|+++ .+++||.++.++ +.||||+|||+....
T Consensus         8 ~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~-~~~~Ww~g~~~~~~~G~fP~~yv~~~~~   64 (71)
T d2hspa_           8 AVKALFDYKAQREDELTFIKSAIIQNVEK-QEGGWWRGDYGGKKQLWFPSNYVEEMVN   64 (71)
T ss_dssp             CEECCSCCCCSSSSSCCCCTTCEEBSCCC-BTTTEECCBCSSCCSCCEETTTCCSCSC
T ss_pred             EEEEcccCCcCCcCCccCCCCCEEEEEEe-cCCCEEEEEECCeEEEEEchHHeEEcCC
Confidence            58999999999999999999999999997 567899998654 556999999986543

>d1fu6a_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Phosphatidylinositol 3-kinase, p85-alpha subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=8.7e-16  Score=115.64  Aligned_cols=89  Identities=26%  Similarity=0.605  Sum_probs=75.5

Q ss_pred             cccccccccccccCCHHHHHHHhcCCCCccEEEeecCCC-CCceEEEEEeCCeeEEEEEEEcCCCcEEEec-eeecchhh
Q psy10189         52 YIEMKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCSDGVQHFKVLRDSSGKFFLWV-VKFNSLNE  129 (376)
Q Consensus        52 yve~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~-~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~-~~f~sl~~  129 (376)
                      -+.+...+||||.|+|++|+.+|.+.++|+||||.|.+. ++.|+|++..++.+.|++|... ++.|++.. ..|.|+.+
T Consensus         5 ~~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~~ls~~~~~~~~H~~I~~~-~~~~~~~~~~~F~sl~~   83 (111)
T d1fu6a_           5 NMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHR-DGKYGFSDPLTFNSVVE   83 (111)
T ss_dssp             CCCCSCCSSCCSSCCSHHHHHHSSSCSSCCCCCBSSCCSSSCCSBCEEEETTEEEECCCCCT-TTCCCTTTTSCCCCTTH
T ss_pred             CCccCcCcCCCCCCCHHHHHHHhCcCCCCEEEEEeccCCCCccEEEEEecCCceEEEEEEEc-CCeEEECCCcccCCHHH
Confidence            345778999999999999999999988999999998765 4679999999999999999754 45566554 45999999


Q ss_pred             hHhhhhcccccc
Q psy10189        130 LVEYHRTASVSR  141 (376)
Q Consensus       130 li~~~~~~~~~~  141 (376)
                      ||+||..+++..
T Consensus        84 LV~~y~~~~l~~   95 (111)
T d1fu6a_          84 LINHYRNESLAQ   95 (111)
T ss_dssp             HHHHHHTTCSTT
T ss_pred             HHHHHhhCcCCc
Confidence            999999887553

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-15  Score=99.28  Aligned_cols=56  Identities=30%  Similarity=0.755  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.+++|+|++||+|.|++..+++||.|+.+|+.|+||++||++..
T Consensus         6 ~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEECC
Confidence            46899999999999999999999999999999999999999999999999998864

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.1e-15  Score=100.82  Aligned_cols=54  Identities=13%  Similarity=0.326  Sum_probs=46.5

Q ss_pred             EEEEeecCCC------CCCCCccccCCCEEEEEeccCCccceeecc--CCccceeccccccc
Q psy10189          2 EAIAKHDFNA------TAEDELSFRKSQVLKILNMEDDMNWYRAEL--DGKEGLIPSNYIEM   55 (376)
Q Consensus         2 ~~~al~~y~~------~~~~eLsf~~Gd~i~v~~~~~~~~W~~~~~--~g~~G~vP~nyve~   55 (376)
                      ++.|+++|.+      ++.+||+|++||+|.|++...+++||.|+.  +|++||||+|||++
T Consensus         6 k~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVeP   67 (69)
T d1gcqc_           6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP   67 (69)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             cEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEE
Confidence            5678888875      678999999999999998656678999984  79999999999985

>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Tyrosine phoshatase shp-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.4e-15  Score=109.41  Aligned_cols=82  Identities=34%  Similarity=0.599  Sum_probs=68.4

Q ss_pred             ccccccCCHHHHHHHhcC-CCCccEEEeecCCCCCceEEEEEeC----------CeeEEEEEEEcCCCcEEEec-eeecc
Q psy10189         59 DWYYGRITRADAERLLSN-KHEGAFLIRVSESSPGDFSLSVKCS----------DGVQHFKVLRDSSGKFFLWV-VKFNS  126 (376)
Q Consensus        59 ~w~~g~isr~~ae~~l~~-~~~G~flvR~s~~~~~~~~Ls~~~~----------~~v~h~~I~~~~~~~~~~~~-~~f~s  126 (376)
                      .||||.|+|++|+.+|.. ..+|+||||.|++.++.|+||+...          ..++|+.|.... +.|++.+ ..|.|
T Consensus         1 rWyhG~i~R~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~~~~~~~~h~~i~~~~-~~~~~~~~~~F~s   79 (108)
T d2shpa3           1 RWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQE-LKYDVGGGERFDS   79 (108)
T ss_dssp             TTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEET-TEEESSSSCCBSS
T ss_pred             CCCcCCCCHHHHHHHHhhcCCCCeEEEEecCCCCCCeEEEEEecCccccccccccceeeEEEEeCC-CceEeCCCcccCC
Confidence            399999999999999975 5799999999999999999999975          346888887544 4555544 45999


Q ss_pred             hhhhHhhhhcccccc
Q psy10189        127 LNELVEYHRTASVSR  141 (376)
Q Consensus       127 l~~li~~~~~~~~~~  141 (376)
                      +.+||+||+.+++..
T Consensus        80 l~~LV~~y~~~~l~~   94 (108)
T d2shpa3          80 LTDLVEHYKKNPMVE   94 (108)
T ss_dssp             HHHHHHHHHHSCCBC
T ss_pred             HHHHHHHHhhCCCCC
Confidence            999999999887653

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=4.4e-15  Score=95.71  Aligned_cols=54  Identities=35%  Similarity=0.914  Sum_probs=51.0

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.+++|+|++||.+.|+++.+++||.|+.+|+.|+||++||+++
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            367999999999999999999999999999999999999999999999999863

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-15  Score=106.15  Aligned_cols=56  Identities=18%  Similarity=0.452  Sum_probs=49.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc--------------CCccceeec--cCCccceeccccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME--------------DDMNWYRAE--LDGKEGLIPSNYIEMKN   57 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~--------------~~~~W~~~~--~~g~~G~vP~nyve~~~   57 (376)
                      +++|||+|++..++||+|++||+|.|+.+.              ++++||.|+  .+|++||||+|||+...
T Consensus         5 ~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~   76 (83)
T d1phta_           5 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIG   76 (83)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEE
T ss_pred             EEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcC
Confidence            689999999999999999999999999752              246799997  48999999999998654

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.4e-15  Score=97.56  Aligned_cols=54  Identities=26%  Similarity=0.685  Sum_probs=51.8

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      +++|+|+|.++.+++|+|++||++.|+++.+++||.++.+|+.|+||++||+++
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           4 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             EEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            578999999999999999999999999999999999999999999999999886

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=6e-15  Score=96.11  Aligned_cols=54  Identities=46%  Similarity=0.904  Sum_probs=51.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      ..++|+|+|.++.++||+|++||++.|+++.+++||.|+.+|+.|+||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            468999999999999999999999999999999999999999999999999873

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6e-15  Score=94.10  Aligned_cols=52  Identities=23%  Similarity=0.467  Sum_probs=49.4

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYIL  207 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~  207 (376)
                      .++|+|+|.++.++||+|.+||++.|+++.+++||.|+.+|+.|+||++||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            3679999999999999999999999999999999999999999999999985

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=6.7e-15  Score=103.68  Aligned_cols=55  Identities=29%  Similarity=0.600  Sum_probs=47.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEeccC----Cccceeec----------cCCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNMED----DMNWYRAE----------LDGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~~----~~~W~~~~----------~~g~~G~vP~nyve~~   56 (376)
                      +|+|+|+|+|+.++||+|++||+|.|+.+.+    +++||.+.          .+|+.||||+|||+..
T Consensus        14 ~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          14 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            6899999999999999999999999998632    35799875          3578999999999853

>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Beta-chimaerin, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-14  Score=111.45  Aligned_cols=73  Identities=29%  Similarity=0.599  Sum_probs=65.2

Q ss_pred             ccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHh
Q psy10189         57 NHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVE  132 (376)
Q Consensus        57 ~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~  132 (376)
                      ..+||||.|+|++|+.+|.. .+|+||||.|.+.++.|+||+..++.++|++|..  +|.+++.+..|+|+.+||.
T Consensus        34 ~~~wyhG~isR~eAe~lL~~-~dGsFLVR~S~~~~g~y~LSv~~~~~v~H~~I~~--~g~~~~~~~~F~sl~eLV~  106 (141)
T d1xa6a2          34 YGREFHGIISREQADELLGG-VEGAYILRESQRQPGCYTLALRFGNQTLNYRLFH--DGKHFVGEKRFESIHDLVT  106 (141)
T ss_dssp             SCSSEEEECCHHHHHHHHCS-CTTBEEEEECSSSTTCEEEEEEETTEEEECCCEE--SSSEECSSSCCCCSSHHHH
T ss_pred             ccceeeccCCHHHHHHHHcC-CCCeEEEEecCCCCCCEEEEEEECCEEEEEEEEE--CCCEEECCCeECCHHHHHh
Confidence            45699999999999999975 5799999999999999999999999999999976  4677777778999999885

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.46  E-value=2.1e-14  Score=91.71  Aligned_cols=51  Identities=33%  Similarity=0.751  Sum_probs=47.7

Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeeccccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYIL  207 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~  207 (376)
                      ++|+|+|.++.++||+|++||.+.|+++.+++||.++ .+|+.|+||++||+
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~   52 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV   52 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEe
Confidence            4689999999999999999999999999999999998 47899999999986

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=3.3e-14  Score=92.22  Aligned_cols=53  Identities=30%  Similarity=0.900  Sum_probs=49.7

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeecccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILN  208 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~  208 (376)
                      .++|+|+|.++.+++|+|++||+|.|+.+.+++||.++. +|+.|+||++||++
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            478999999999999999999999999999999999985 68999999999986

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=4.3e-14  Score=92.27  Aligned_cols=54  Identities=37%  Similarity=0.701  Sum_probs=50.3

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.++||+|++||++.|+++.+++||.++.  +|+.|+||++||+.+
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            478999999999999999999999999999999999986  689999999999875

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.9e-14  Score=91.89  Aligned_cols=54  Identities=26%  Similarity=0.551  Sum_probs=48.6

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCC-cceeeeeCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQ-HWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~-~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      .++|+|+|.++.++||+|++||.+.|+++.++ +||.++.+|+.|+||++||+++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            36899999999999999999999999987655 5778999999999999999986

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.1e-14  Score=93.73  Aligned_cols=55  Identities=29%  Similarity=0.702  Sum_probs=49.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC---CcceeeeeCCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD---QHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~---~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+   .+||.|+.+|+.|+||++||+..
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            35789999999999999999999999998754   36999999999999999999865

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.8e-14  Score=91.14  Aligned_cols=53  Identities=25%  Similarity=0.688  Sum_probs=49.3

Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      ++|+|+|.++.++||+|++||.+.|+++.+++||.++.  +|+.|+||++||+|+
T Consensus         3 ~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            67999999999999999999999999999999999885  789999999999874

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=8.3e-15  Score=106.81  Aligned_cols=52  Identities=31%  Similarity=0.507  Sum_probs=45.1

Q ss_pred             EEEEeecCCCCC-----CCCccccCCCEEEEEeccCCccceeec------cCCccceecccccc
Q psy10189          2 EAIAKHDFNATA-----EDELSFRKSQVLKILNMEDDMNWYRAE------LDGKEGLIPSNYIE   54 (376)
Q Consensus         2 ~~~al~~y~~~~-----~~eLsf~~Gd~i~v~~~~~~~~W~~~~------~~g~~G~vP~nyve   54 (376)
                      -++|+|||+++.     ..||+|++||+|.|+++ .+++||.|+      .+|++||||+|||+
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~-~d~~WW~~~~~~~~~~~g~~G~~Psnyv~   65 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDA-GDEEWWQARRVHSDSETDDIGFIPSKRRV   65 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEEC-CSSSEEEEEECCSSCCCSCCEEEECHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeee-ccCceEEEEEccCCCCCCCEeEEecccee
Confidence            368999999975     45899999999999997 567899997      36889999999986

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.9e-14  Score=106.09  Aligned_cols=63  Identities=19%  Similarity=0.337  Sum_probs=57.0

Q ss_pred             CCCchhhhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        149 DMVPEECLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       149 ~~~~~~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      .|.+.+..++|+|+|.++.++||+|.+||+|.|+++.+++||.|+.+|+.||||++||+++..
T Consensus         9 ~~~~~g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2           9 EPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             CCCTTCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             CCCCCCcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECCC
Confidence            344445688999999999999999999999999999999999999999999999999998754

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=8e-14  Score=90.74  Aligned_cols=54  Identities=46%  Similarity=1.005  Sum_probs=49.1

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCC--CcceeeeeCCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSD--QHWWHGEIGARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~~~~~~G~~P~~~v~~~  209 (376)
                      +++|+|+|.++.++||+|++||.+.|+++.+  ++||.++.+|+.|+||++||+.+
T Consensus         3 ~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            4889999999999999999999999998864  57999999999999999999753

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.6e-14  Score=95.71  Aligned_cols=57  Identities=40%  Similarity=0.882  Sum_probs=52.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++ +++||.++.+|+.|+||.+||+++++.
T Consensus         9 ~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~~   65 (69)
T d1uhfa_           9 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             EEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCCC
Confidence            568899999999999999999999999976 468999999999999999999998653

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.1e-14  Score=97.78  Aligned_cols=57  Identities=32%  Similarity=0.759  Sum_probs=53.5

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.++.+|+.|+||.+||+++..
T Consensus        11 ~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~   67 (76)
T d1ujya_          11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCC
Confidence            468899999999999999999999999999999999999999999999999998754

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.41  E-value=4.4e-14  Score=100.73  Aligned_cols=51  Identities=24%  Similarity=0.447  Sum_probs=45.5

Q ss_pred             EEEEeecCCCCCCCC-------ccccCCCEEEEEeccCCccceeecc---CCccceeccccc
Q psy10189          2 EAIAKHDFNATAEDE-------LSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYI   53 (376)
Q Consensus         2 ~~~al~~y~~~~~~e-------Lsf~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~vP~nyv   53 (376)
                      .+.|+|||++..+++       |+|++||+|.|+++ .+++||.|+.   +|+.||||++++
T Consensus        23 ~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~-~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          23 AVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEK-FNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             EEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEE-CSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeccCCCCCCCCccccccccCCCCCEEEEeee-eCCCceEEEEcCCCCCEEEecCcHH
Confidence            478999999999888       99999999999998 6668999985   678999999874

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.1e-14  Score=91.40  Aligned_cols=53  Identities=36%  Similarity=0.767  Sum_probs=44.2

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeeeCCeeeeeecccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEIGARKGLFPATYILN  208 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~  208 (376)
                      .++|+|+|.++.++||+|.+||.+.|+++. +++||.++.+|+.|+||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            478999999999999999999999988764 56788899999999999999963

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.2e-14  Score=102.70  Aligned_cols=55  Identities=18%  Similarity=0.301  Sum_probs=47.1

Q ss_pred             EEEEeecCCCCCCCCccccCCCEEEEEecc--CCccceeecc--------CCccceecccccccc
Q psy10189          2 EAIAKHDFNATAEDELSFRKSQVLKILNME--DDMNWYRAEL--------DGKEGLIPSNYIEMK   56 (376)
Q Consensus         2 ~~~al~~y~~~~~~eLsf~~Gd~i~v~~~~--~~~~W~~~~~--------~g~~G~vP~nyve~~   56 (376)
                      .++|||||.+++++||+|++||+|.|+++.  .+++||.|..        +|++||||+|||+..
T Consensus        23 ~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~   87 (106)
T d1i1ja_          23 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   87 (106)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             EEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEc
Confidence            589999999999999999999999999862  4467999864        346899999999854

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.8e-14  Score=93.21  Aligned_cols=55  Identities=29%  Similarity=0.698  Sum_probs=50.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.++||+|++||++.|+++.+++||.++.  +|+.|+||+|||+++
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            5689999999999999999999999999999999999885  689999999999864

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1e-13  Score=93.19  Aligned_cols=57  Identities=28%  Similarity=0.686  Sum_probs=52.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||++.|+++.+.+||.++ .+|+.||||++||++..+
T Consensus         3 ~~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~   60 (67)
T d1gl5a_           3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS   60 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTT
T ss_pred             EEEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecC
Confidence            357899999999999999999999999999999999997 478999999999998754

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.9e-14  Score=93.04  Aligned_cols=56  Identities=21%  Similarity=0.679  Sum_probs=51.5

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.++.++||+|++||.+.|+++.+++||.++.  +|+.|+||++||++.++
T Consensus         4 ~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             EEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            578999999999999999999999999999999999985  57999999999998754

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=3.9e-15  Score=114.60  Aligned_cols=96  Identities=20%  Similarity=0.227  Sum_probs=75.8

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecC-CCCCceEEEEEeCCeeEEEEEEEcCCCcEEEeccccCCHHHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSE-SSPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  312 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~-~~~~~~~ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~  312 (376)
                      +....||||.|+|.+|+++|.++++|+||||.|+ +..|.|+|+++..+...|++|...  .-|......|.||+|+|.|
T Consensus         4 lW~~gw~~G~isr~~a~~~L~~~~~GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~--~p~t~~dl~~~sL~dlI~~   81 (141)
T d1bg1a3           4 LWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSV--EPYTKQQLNNMSFAEIIMG   81 (141)
T ss_dssp             HHHSSCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCC--CCBCGGGGTSSCHHHHTTS
T ss_pred             eecCCeEEEeCCHHHHHHHhhCCCCCeEEEEecCCccCCCEEEEEEecCcCCceEEeec--CCeecCccccCCHHHHHHh
Confidence            4556899999999999999999999999999997 468999999999988889888643  2355556789999999999


Q ss_pred             HhhCCcCCcceeeeCCCCC
Q psy10189        313 HRTASVSRSQDVKLRDMVP  331 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~  331 (376)
                      |+...........|++++|
T Consensus        82 y~~~~~~~~~~~~l~~lyP  100 (141)
T d1bg1a3          82 YKIMDATNILVSPLVYLYP  100 (141)
T ss_dssp             CCCBCTTSSBCCCCSSBTT
T ss_pred             hhhhcccccCcccceeccC
Confidence            9765444322334555554

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.8e-14  Score=95.67  Aligned_cols=56  Identities=32%  Similarity=0.740  Sum_probs=51.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      .+++|+|+|.++.++||+|++||+|.|+++ +++||.++++|+.|+||.+||+++..
T Consensus        11 ~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~   66 (74)
T d1j3ta_          11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPG   66 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCC
T ss_pred             eEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCC
Confidence            578999999999999999999999999987 56899999999999999999998765

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.39  E-value=9.8e-14  Score=106.77  Aligned_cols=76  Identities=22%  Similarity=0.473  Sum_probs=63.7

Q ss_pred             cccccccccccChHHHHHhhcCCCCCceEEeecCCCCCceEEEEEeC---CeeEEEEEEEcCCCcEEEeccccCCHHHHH
Q psy10189        234 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS---DGVQHFKVLRDSSGKFFLWVVKFNSLNELV  310 (376)
Q Consensus       234 ~~~~~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~~~~~~ls~~~~---~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv  310 (376)
                      +-...||||.|+|++|+++|.+.++|+||||.|++.+|.|+||++..   ++|+||+|....+      +..|.++.+++
T Consensus         6 lw~~~~~~G~isr~~ae~~L~~~~~GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~~------~~~~~sl~d~l   79 (131)
T d1uura3           6 LWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDT------AAAKKTFPDFL   79 (131)
T ss_dssp             HHHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGS------BTTTBCHHHHH
T ss_pred             hhhCCcEEccCCHHHHHHHHhcCCCCeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecCC------CcccccHHHHH
Confidence            44568999999999999999988999999999998999999999973   7899999965432      35678888887


Q ss_pred             HHHhh
Q psy10189        311 EYHRT  315 (376)
Q Consensus       311 ~~y~~  315 (376)
                      ..|..
T Consensus        80 ~~~~~   84 (131)
T d1uura3          80 SEHSQ   84 (131)
T ss_dssp             TTCTT
T ss_pred             HhHHH
Confidence            65543

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-13  Score=97.54  Aligned_cols=58  Identities=24%  Similarity=0.434  Sum_probs=52.8

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecCC----CcceeeeeCCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRSD----QHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~----~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ...++|+|+|.++.++||+|++||+|.|+++.+    .+||.++.+|+.||||++||+++..
T Consensus        17 ~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~   78 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNP   78 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCC
T ss_pred             CeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCC
Confidence            356899999999999999999999999999864    6899999999999999999998754

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.8e-14  Score=95.55  Aligned_cols=58  Identities=31%  Similarity=0.789  Sum_probs=51.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC-CeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-ARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|.+||+|.|+++.+++||.|+++ ++.|+||++||+++..+
T Consensus         7 ~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             EEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            56899999999999999999999999999999999999875 45569999999988654

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.7e-14  Score=93.60  Aligned_cols=56  Identities=30%  Similarity=0.711  Sum_probs=51.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeecccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYILNME  210 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~  210 (376)
                      ..++|+|+|.++.++||+|++||++.|+++.+++||.++. +|+.|+||++||+++.
T Consensus         9 ~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~   65 (67)
T d1awwa_           9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECc
Confidence            4689999999999999999999999999999999999985 7899999999999864

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.9e-14  Score=94.90  Aligned_cols=58  Identities=26%  Similarity=0.520  Sum_probs=52.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC-CcceeeeeCCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD-QHWWHGEIGARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|||+|.++.++||+|++||+|.|+++.+ ++||.++.+|+.|+||.+||++++.+
T Consensus        11 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             EEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCCC
Confidence            46899999999999999999999999998765 46889999999999999999998654

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=2.4e-13  Score=93.46  Aligned_cols=58  Identities=16%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee------CCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI------GARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~------~~~~G~~P~~~v~~~~~~  212 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.++.      +|+.||||++||+++..+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~p   71 (74)
T d1wfwa_           8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGP   71 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCST
T ss_pred             CEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCC
Confidence            5688999999999999999999999999999999999874      368999999999998654

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.4e-13  Score=92.61  Aligned_cols=58  Identities=29%  Similarity=0.595  Sum_probs=50.9

Q ss_pred             hhhhhhcccCCCCCCCceeccCCCEEEEEecC-CCcceeeee-CCeeeeeeccccccccc
Q psy10189        154 ECLVQALYDFTPQEPGELEFRRGDVITVTDRS-DQHWWHGEI-GARKGLFPATYILNMED  211 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~-~~~~G~~P~~~v~~~~~  211 (376)
                      +..|+|+|+|.++.++||+|++||+|.|+.+. +++||.++. .|+.|+||.+||+.++.
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   65 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEccc
Confidence            45799999999999999999999999999875 557888886 48999999999998754

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.8e-13  Score=94.22  Aligned_cols=57  Identities=26%  Similarity=0.640  Sum_probs=52.1

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC----CCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS----DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~----~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|||+|.++.++||+|++||+|.|+++.    ..+||.++.+|+.|+||++||+++++
T Consensus        14 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~   74 (79)
T d1uhca_          14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCC
Confidence            4689999999999999999999999999864    46899999999999999999999865

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=2.5e-13  Score=91.13  Aligned_cols=55  Identities=31%  Similarity=0.786  Sum_probs=47.8

Q ss_pred             hhhhhcccCCCCCCC-ceeccCCCEEEEEecCC-----Ccceeeee-CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPG-ELEFRRGDVITVTDRSD-----QHWWHGEI-GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~-eL~~~~g~~i~v~~~~~-----~~w~~~~~-~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.++ ||+|++||+|.|+++.+     .+||.|+. +|+.|+||+|||+.+
T Consensus         6 ~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           6 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             EEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            358999999998765 99999999999998753     58999986 789999999999753

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2.9e-13  Score=88.43  Aligned_cols=55  Identities=24%  Similarity=0.574  Sum_probs=49.1

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee-eCCeeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.++.++||+|++||.+.|+++. ++||.++ .+|+.|+||+|||+++.+
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            578999999999999999999999999875 5788886 488999999999998764

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5e-13  Score=90.89  Aligned_cols=57  Identities=30%  Similarity=0.757  Sum_probs=50.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC--Ccceeee-eCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD--QHWWHGE-IGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~-~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+  ++||.++ .+|+.|+||++||+++..
T Consensus         7 ~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~   66 (71)
T d1u5sa1           7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   66 (71)
T ss_dssp             SEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCC
T ss_pred             EEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCC
Confidence            35889999999999999999999999998754  4799998 478999999999999854

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=5.3e-13  Score=90.97  Aligned_cols=58  Identities=26%  Similarity=0.472  Sum_probs=49.1

Q ss_pred             hhhhhcccCCCC-CCCceeccCCCEEEEEecC-CCcceeeee--CCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQ-EPGELEFRRGDVITVTDRS-DQHWWHGEI--GARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~-~~~eL~~~~g~~i~v~~~~-~~~w~~~~~--~~~~G~~P~~~v~~~~~~  212 (376)
                      .+++|+|+|.+. +++||+|++||+|.|+.+. .++||.+++  +++.|+||+|||+.++.+
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~p   69 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCCC
Confidence            578999999985 5789999999999998664 567998886  488999999999998653

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.9e-13  Score=92.86  Aligned_cols=57  Identities=23%  Similarity=0.550  Sum_probs=51.8

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeeeC-----Ceeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEIG-----ARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-----~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|+..     ++.||||.+||+++..
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~   69 (80)
T d1ue9a_           8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP   69 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCS
T ss_pred             CEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCC
Confidence            56899999999999999999999999999999999999753     5689999999998754

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=9.2e-13  Score=85.23  Aligned_cols=51  Identities=27%  Similarity=0.551  Sum_probs=44.2

Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEEecCCCc-ceeee--eCCeeeeeeccccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVTDRSDQH-WWHGE--IGARKGLFPATYIL  207 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~-w~~~~--~~~~~G~~P~~~v~  207 (376)
                      ++|||+|.++.++||+|++||+|.|++..+.+ ||.+.  .+|+.|+||+|||+
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            67999999999999999999999999887665 45444  47999999999986

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.4e-13  Score=95.23  Aligned_cols=57  Identities=30%  Similarity=0.655  Sum_probs=51.6

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC--CCcceeeeeCCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS--DQHWWHGEIGARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|||+|.++.++||+|++||+|.|+++.  +.+||.++.+|+.|+||.+||+++..
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~   64 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS   64 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCC
Confidence            4689999999999999999999999999875  45688999999999999999998754

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=87.24  Aligned_cols=56  Identities=29%  Similarity=0.735  Sum_probs=48.4

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeeee--CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      ..++|+|+|.++.++||+|++||.+.|+++. ++||.+..  +|+.|+||++||+++++
T Consensus         5 ~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~~-~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEEEECCcCCCCCcCccCCCCCCEEEEEEEC-CCCEEEEEccCCCEEEEchHHeEECcc
Confidence            4578999999999999999999999999865 56777653  68999999999998754

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.5e-12  Score=85.04  Aligned_cols=53  Identities=26%  Similarity=0.753  Sum_probs=46.2

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCCCcceeee--eCCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSDQHWWHGE--IGARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~~~~G~~P~~~v~~  208 (376)
                      ..++|+|+|.++.++||+|++||+|.|+++.++ ||.++  .+|+.|+||++||++
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~~-ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSS-EEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCC-CEEEEeccCCeEeEEcHHHEEe
Confidence            468999999999999999999999999998765 65554  478999999999975

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-12  Score=92.03  Aligned_cols=58  Identities=26%  Similarity=0.576  Sum_probs=48.6

Q ss_pred             hhhhhcccCCCCC------CCceeccCCCEEEEEecCCC-cceeeee-CCeeeeeecccccccccC
Q psy10189        155 CLVQALYDFTPQE------PGELEFRRGDVITVTDRSDQ-HWWHGEI-GARKGLFPATYILNMEDD  212 (376)
Q Consensus       155 ~~~~al~~~~~~~------~~eL~~~~g~~i~v~~~~~~-~w~~~~~-~~~~G~~P~~~v~~~~~~  212 (376)
                      ..|+|+|||.++.      ++||+|++||+|.|+.+.+. +||.+.. +|+.||||+|||+++...
T Consensus        18 ~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~   83 (96)
T d1wiea_          18 HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             EEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             eEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCc
Confidence            5789999998864      47899999999999987655 5777764 789999999999988653

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=3.6e-12  Score=85.49  Aligned_cols=53  Identities=19%  Similarity=0.403  Sum_probs=44.6

Q ss_pred             hhhcccCCCCCCCceeccCCCEEEEEec-CCCcceeeee--CCeeeeeeccccccc
Q psy10189        157 VQALYDFTPQEPGELEFRRGDVITVTDR-SDQHWWHGEI--GARKGLFPATYILNM  209 (376)
Q Consensus       157 ~~al~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~--~~~~G~~P~~~v~~~  209 (376)
                      +.+++++.+++.+||+|++||+|.|++. .+++||.|++  +|+.|+||+|||+|.
T Consensus        13 y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_          13 YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             BSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            4445555668889999999999999975 5678999996  689999999999984

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=2.3e-12  Score=90.48  Aligned_cols=55  Identities=29%  Similarity=0.546  Sum_probs=48.0

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecCC-----Ccceeeee----------CCeeeeeeccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRSD-----QHWWHGEI----------GARKGLFPATYILNM  209 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~~-----~~w~~~~~----------~~~~G~~P~~~v~~~  209 (376)
                      ..++|+|+|.++.++||+|++||+|.|+.+.+     ++||.|..          +|+.|+||+|||+.+
T Consensus        13 ~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            46899999999999999999999999997643     57999864          467999999999875

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.1e-12  Score=91.36  Aligned_cols=57  Identities=28%  Similarity=0.600  Sum_probs=50.3

Q ss_pred             hhhhhcccCCCCCCCceeccCCCEEEEEecC---------------CCcceeeee--CCeeeeeeccccccccc
Q psy10189        155 CLVQALYDFTPQEPGELEFRRGDVITVTDRS---------------DQHWWHGEI--GARKGLFPATYILNMED  211 (376)
Q Consensus       155 ~~~~al~~~~~~~~~eL~~~~g~~i~v~~~~---------------~~~w~~~~~--~~~~G~~P~~~v~~~~~  211 (376)
                      .+++|||+|.++.++||+|++||+|.|+.+.               +++||.|+.  +|+.|+||++||+.+..
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            5789999999999999999999999999652               467999975  78999999999998754

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=3.4e-12  Score=99.81  Aligned_cols=51  Identities=20%  Similarity=0.410  Sum_probs=45.7

Q ss_pred             EEEEeecCCCCCCCC-------ccccCCCEEEEEeccCCccceeecc---CCccceeccccc
Q psy10189          2 EAIAKHDFNATAEDE-------LSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYI   53 (376)
Q Consensus         2 ~~~al~~y~~~~~~e-------Lsf~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~vP~nyv   53 (376)
                      .+.|+|||++..+++       |+|++||+|.|+++ .+++||.|+.   +|+.||||++|+
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~-~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEK-YNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEE-EETTEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeec-cCCCcEEEEEcCCCCceeEeCCchh
Confidence            489999999999988       99999999999998 5568999984   789999999874

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.16  E-value=5.6e-12  Score=89.66  Aligned_cols=54  Identities=20%  Similarity=0.592  Sum_probs=48.6

Q ss_pred             hhhhhhcccCCCCCCCc-------eeccCCCEEEEEecCCCcceeeee---CCeeeeeeccccc
Q psy10189        154 ECLVQALYDFTPQEPGE-------LEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYIL  207 (376)
Q Consensus       154 ~~~~~al~~~~~~~~~e-------L~~~~g~~i~v~~~~~~~w~~~~~---~~~~G~~P~~~v~  207 (376)
                      ...++|+|||.+..+++       |+|++||+|.|+++.+++||.|++   +|+.|+||++++.
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~~   84 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKL   84 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHHH
Confidence            35689999999998887       999999999999999999999997   5789999998753

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=3.2e-12  Score=92.77  Aligned_cols=54  Identities=30%  Similarity=0.676  Sum_probs=47.3

Q ss_pred             hhhhcccCCCCC-----CCceeccCCCEEEEEecCCCcceeeee------CCeeeeeeccccccc
Q psy10189        156 LVQALYDFTPQE-----PGELEFRRGDVITVTDRSDQHWWHGEI------GARKGLFPATYILNM  209 (376)
Q Consensus       156 ~~~al~~~~~~~-----~~eL~~~~g~~i~v~~~~~~~w~~~~~------~~~~G~~P~~~v~~~  209 (376)
                      .++|+|||.++.     ..+|+|++||+|.|+++.+++||.|+.      +|+.|+||+|||...
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            468999999976     358999999999999999999999974      578999999999753

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.3e-11  Score=89.11  Aligned_cols=56  Identities=27%  Similarity=0.538  Sum_probs=48.8

Q ss_pred             hhhhcccCCCCCCCceeccCCCEEEEEec---CCCcceeeeeC--------Ceeeeeeccccccccc
Q psy10189        156 LVQALYDFTPQEPGELEFRRGDVITVTDR---SDQHWWHGEIG--------ARKGLFPATYILNMED  211 (376)
Q Consensus       156 ~~~al~~~~~~~~~eL~~~~g~~i~v~~~---~~~~w~~~~~~--------~~~G~~P~~~v~~~~~  211 (376)
                      .++|+|+|.++.+++|+|++||+|.|+++   .+.+||.|.+.        ++.||||+|||+.+..
T Consensus        23 ~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~   89 (106)
T d1i1ja_          23 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   89 (106)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             EEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccc
Confidence            58999999999999999999999999986   45779999753        4689999999997643

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=7.1e-11  Score=90.19  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=44.3

Q ss_pred             EEEEeecCCCCCCCC-------ccccCCCEEEEEeccCCccceeecc---CCccceeccccc
Q psy10189          2 EAIAKHDFNATAEDE-------LSFRKSQVLKILNMEDDMNWYRAEL---DGKEGLIPSNYI   53 (376)
Q Consensus         2 ~~~al~~y~~~~~~e-------Lsf~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~vP~nyv   53 (376)
                      .+.|+|+|++..+++       |+|++||+|.|+++ .+++||.|+.   +|..||||++|+
T Consensus        25 ~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~-~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          25 AVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEK-YSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             EEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEE-CSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEec-cCCCcEEEEeccCCCceeccCchHH
Confidence            478999999988777       89999999999998 6668999983   577899999883

>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT homologue
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.89  E-value=8.3e-10  Score=84.37  Aligned_cols=73  Identities=23%  Similarity=0.483  Sum_probs=58.7

Q ss_pred             cccccccccCCHHHHHHHhcCCCCccEEEeecCCCCCceEEEEEeC---CeeEEEEEEEcCCCcEEEeceeecchhhhHh
Q psy10189         56 KNHDWYYGRITRADAERLLSNKHEGAFLIRVSESSPGDFSLSVKCS---DGVQHFKVLRDSSGKFFLWVVKFNSLNELVE  132 (376)
Q Consensus        56 ~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~~~~~~Ls~~~~---~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~  132 (376)
                      ..+.||+|.|+|++|+.+|.+.++|+||||.|.+.+|.|+||+...   +.++|+.|.....+      ..+.++.+++.
T Consensus         7 w~~~~~~G~isr~~ae~~L~~~~~GtFLvR~S~s~~g~~~ls~~~~~~~~~v~h~~i~~~~~~------~~~~sl~d~l~   80 (131)
T d1uura3           7 WQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPNDTA------AAKKTFPDFLS   80 (131)
T ss_dssp             HHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCGGGSB------TTTBCHHHHHT
T ss_pred             hhCCcEEccCCHHHHHHHHhcCCCCeEEEEecCCCCCcEEEEEEEecCCCcEEEEEEeecCCC------cccccHHHHHH
Confidence            4567999999999999999999999999999999999999999974   67899998643322      23566666555


Q ss_pred             hh
Q psy10189        133 YH  134 (376)
Q Consensus       133 ~~  134 (376)
                      .+
T Consensus        81 ~~   82 (131)
T d1uura3          81 EH   82 (131)
T ss_dssp             TC
T ss_pred             hH
Confidence            44

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=4e-10  Score=87.76  Aligned_cols=54  Identities=19%  Similarity=0.542  Sum_probs=48.5

Q ss_pred             hhhhhcccCCCCCCCc-------eeccCCCEEEEEecCCCcceeeee---CCeeeeeecccccc
Q psy10189        155 CLVQALYDFTPQEPGE-------LEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYILN  208 (376)
Q Consensus       155 ~~~~al~~~~~~~~~e-------L~~~~g~~i~v~~~~~~~w~~~~~---~~~~G~~P~~~v~~  208 (376)
                      ..++|+|||.+..+++       |+|++||+|.|+++.+++||.|++   +|+.|+||++|+..
T Consensus        24 f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~e   87 (145)
T d1vyva1          24 FAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLE   87 (145)
T ss_dssp             EEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHHH
T ss_pred             EEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhhh
Confidence            3589999999999887       999999999999999999999996   68999999987543

>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT3b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.7e-10  Score=88.30  Aligned_cols=82  Identities=21%  Similarity=0.259  Sum_probs=67.5

Q ss_pred             ccccccccccCCHHHHHHHhcCCCCccEEEeecCC-CCCceEEEEEeCCeeEEEEEEEcCCCcEEEeceeecchhhhHhh
Q psy10189         55 MKNHDWYYGRITRADAERLLSNKHEGAFLIRVSES-SPGDFSLSVKCSDGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  133 (376)
Q Consensus        55 ~~~~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~-~~~~~~Ls~~~~~~v~h~~I~~~~~~~~~~~~~~f~sl~~li~~  133 (376)
                      +..+.||+|.|+|.+|+++|.+.++|+||||.|++ ..|.+++++...+...|.+|....  .|.....+|.++.|+|.+
T Consensus         4 lW~~gw~~G~isr~~a~~~L~~~~~GtFLvR~S~~s~~G~~tis~~~~~~~~~~~i~~~~--p~t~~dl~~~sL~dlI~~   81 (141)
T d1bg1a3           4 LWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVE--PYTKQQLNNMSFAEIIMG   81 (141)
T ss_dssp             HHHSSCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEECCCCSSSCSSCCCCCCC--CBCGGGGTSSCHHHHTTS
T ss_pred             eecCCeEEEeCCHHHHHHHhhCCCCCeEEEEecCCccCCCEEEEEEecCcCCceEEeecC--CeecCccccCCHHHHHHh
Confidence            45678999999999999999999999999999974 689999999998888887775322  244444569999999999


Q ss_pred             hhccc
Q psy10189        134 HRTAS  138 (376)
Q Consensus       134 ~~~~~  138 (376)
                      |+...
T Consensus        82 y~~~~   86 (141)
T d1bg1a3          82 YKIMD   86 (141)
T ss_dssp             CCCBC
T ss_pred             hhhhc
Confidence            97544

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=6.5e-09  Score=79.09  Aligned_cols=53  Identities=19%  Similarity=0.489  Sum_probs=46.7

Q ss_pred             hhhhhcccCCCCCCCc-------eeccCCCEEEEEecCCCcceeeee---CCeeeeeeccccc
Q psy10189        155 CLVQALYDFTPQEPGE-------LEFRRGDVITVTDRSDQHWWHGEI---GARKGLFPATYIL  207 (376)
Q Consensus       155 ~~~~al~~~~~~~~~e-------L~~~~g~~i~v~~~~~~~w~~~~~---~~~~G~~P~~~v~  207 (376)
                      ..++|+|+|.+..+++       |+|++||+|.|+++.+.+||.|++   ++..|++|+.++.
T Consensus        24 ~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~l   86 (136)
T d1vyua1          24 FAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRL   86 (136)
T ss_dssp             EEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHH
T ss_pred             EEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHHH
Confidence            4688999999988776       999999999999999999999985   5789999998753

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.7e-05  Score=59.20  Aligned_cols=90  Identities=18%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             cccccccChHHHHHhhcCCCCCceEEeecCCC-CCceEEEEEeC----CeeEEEEEEEcCCCcEEEeccccCCHHHHHHH
Q psy10189        238 DWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKCS----DGVQHFKVLRDSSGKFFLWVVKFNSLNELVEY  312 (376)
Q Consensus       238 ~w~~g~i~r~~ae~~L~~~~~G~flvR~s~~~-~~~~~ls~~~~----~~v~h~~I~~~~~~~~~~~~~~f~sl~~lv~~  312 (376)
                      .|..|-|+|++|+++|.+++.|+||+|-|++. .|-.++++...    +...++.+..     |....-.--||+|.|..
T Consensus         8 G~I~GFIsK~~a~~~L~~~~~GTFLLRFSdS~~~GgitiawV~~~~~~~~~~v~~lqP-----~t~kdl~~~sLad~Ird   82 (142)
T d1bf5a3           8 GCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEP-----YTKKELSAVTFPDIIRN   82 (142)
T ss_dssp             TCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCCCSSSSCCCCEECCC-----BCHHHHHSSCHHHHHHT
T ss_pred             CEEEEEecHHHHHHHhhCCCCceEEEEeccCccCCceEEEEEEecCCCCceeEEeeCC-----CchhhhccCCHHHHHHH
Confidence            45688999999999999999999999999876 58888888752    2232333321     11112234589999987


Q ss_pred             HhhCCcCCcceeeeCCCCCc
Q psy10189        313 HRTASVSRSQDVKLRDMVPE  332 (376)
Q Consensus       313 y~~~~~~~~~~~~L~~p~~~  332 (376)
                      |+--.........|++.+|.
T Consensus        83 ~~~l~~~~~~~~~L~~LYP~  102 (142)
T d1bf5a3          83 YKVMAAENIPENPLKYLYPN  102 (142)
T ss_dssp             CCCSCCSSSCCCSCCCSSTT
T ss_pred             HHhhhhccCCCCCceEecCC
Confidence            75322111123346665554

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.005  Score=40.15  Aligned_cols=40  Identities=18%  Similarity=0.364  Sum_probs=33.2

Q ss_pred             CCCCccccCCCEEEEEeccCCccceeec-cCCccceeccccc
Q psy10189         13 AEDELSFRKSQVLKILNMEDDMNWYRAE-LDGKEGLIPSNYI   53 (376)
Q Consensus        13 ~~~eLsf~~Gd~i~v~~~~~~~~W~~~~-~~g~~G~vP~nyv   53 (376)
                      ...+|+++.||.|.||+. .+++=|.++ ..|+-|||+.+.|
T Consensus        35 g~~dL~vk~GE~ldVIr~-t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQT-TDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEE-SSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEe-CCCCeEEEEcCCCcEEEEEeeee
Confidence            345999999999999997 446667777 7899999998765

>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: STAT-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.01  Score=43.85  Aligned_cols=43  Identities=30%  Similarity=0.487  Sum_probs=37.0

Q ss_pred             cccccccCCHHHHHHHhcCCCCccEEEeecCCC-CCceEEEEEe
Q psy10189         58 HDWYYGRITRADAERLLSNKHEGAFLIRVSESS-PGDFSLSVKC  100 (376)
Q Consensus        58 ~~w~~g~isr~~ae~~l~~~~~G~flvR~s~~~-~~~~~Ls~~~  100 (376)
                      +.|-.|-|++++|+.+|.+.+.|+||+|-|++. +|..+++...
T Consensus         7 dG~I~GFIsK~~a~~~L~~~~~GTFLLRFSdS~~~GgitiawV~   50 (142)
T d1bf5a3           7 DGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVE   50 (142)
T ss_dssp             TTCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECC
T ss_pred             CCEEEEEecHHHHHHHhhCCCCceEEEEeccCccCCceEEEEEE
Confidence            345678899999999999999999999999987 5888887764

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.017  Score=37.54  Aligned_cols=40  Identities=15%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             CCCceeccCCCEEEEEecCCCcceeeee-CCeeeeeecccc
Q psy10189        167 EPGELEFRRGDVITVTDRSDQHWWHGEI-GARKGLFPATYI  206 (376)
Q Consensus       167 ~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~~~~G~~P~~~v  206 (376)
                      ...+|.++.|+.+.|+...+++=|.|+. .|+-|+|+..+|
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            3468999999999999999999899986 799999998776

>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SH2-like
superfamily: SH2 domain
family: SH2 domain
domain: Cbl
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=1  Score=28.61  Aligned_cols=42  Identities=17%  Similarity=0.348  Sum_probs=35.8

Q ss_pred             cccccccChHHHHHhhcC--CCCCceEEeecCCCCCceEEEEEe
Q psy10189        238 DWYYGRITRADAERLLSN--KHEGAFLIRVSESSPGDFSLSVKC  279 (376)
Q Consensus       238 ~w~~g~i~r~~ae~~L~~--~~~G~flvR~s~~~~~~~~ls~~~  279 (376)
                      |-|.-.++=+|+...|..  .+.|+|+.|-|.++-|.+++-...
T Consensus         3 PgY~AFlTYDevk~rL~~~~~kPGSYiFRlSCTrlGQWAIGyvt   46 (88)
T d3buxb3           3 PGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVT   46 (88)
T ss_dssp             TTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEEC
T ss_pred             CceeEEEeHHHHHHHHHHHhcCCCceEEeeccccccceeeeeec
Confidence            456777899999999984  578999999999999999988765