Psyllid ID: psy10327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI
Secondary Structure (PSIPRED)
ccEEcccEEEEEEEEEEccccccccccHHHHHHccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEEcccccccccccccccccccccHHHccccccccccccccHHHHHHccccccccccccEEEEEEEccEEEEEEEEEEcccccccccccHHHHHccccccccccccccEEccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccccccccEEEEEEcccEEEccccccccccccccccEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEEEEEEEEEEEEccccccccEEEcHHHHHHHccccccccccccccccccHccccccEEEEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccccccccEEEEEEcccEEEEccccccccccccEccEccEcccccccccccccEEEEcccccccEcccEEEEccccHHcc
Coil and Loop (DISEMBL)
mdikigkqevgRITIQLRydlvprtaENFRCLcthekgfgyqgssfhriiPDFVSFMTKHQSLKSRFSnlgglaeevddkvlnaafipfgdlvdiqmpldyeTEKHQLFGRIIRVnlakpqkvqqtsskpvwasdtwlqkhagetldpenqidpaeklaasidpktkknpqvymDIKIGKQEVGRITIQLRydlvprtaENFRCLcthekgfgyqgssfhriipdfmcqggdftnhngtggksiygnkfedenfilkhtgpgvlsmansgpntngsqfFLCTTKTEWNI
Flexible Loop (DISEMBL)
mdikigkqevgritiqlrydlvprTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAkpqkvqqtsskpvwasDTWLQKHAGetldpenqidPAEKLaasidpktkknpqvymdikigkqevgrITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI
Low Complexity Region (SEG)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI
Disordered region (IsUnstruct)
****************************FRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAK***********VWASDTWL*********************************VYMDIKIGKQEVGRITI*************FRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVL************QFFLCTT******
Disordered Region (DISOPRED)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAK***************************************************QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI
Disordered Region (DISEMBL)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAK************WASDTWLQKHAGETLDPENQIDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI
Disordered Region (DISPRO)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAG*********************KTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9UNP9	301	Peptidyl-prolyl cis-trans	no	N/A	0.754	0.724	0.625	5e-88
Q5R723	301	Peptidyl-prolyl cis-trans	yes	N/A	0.754	0.724	0.625	1e-87
A4FV72	301	Peptidyl-prolyl cis-trans	yes	N/A	0.768	0.737	0.634	3e-87
Q9QZH3	301	Peptidyl-prolyl cis-trans	yes	N/A	0.768	0.737	0.638	4e-87
Q9V3G3	300	Peptidyl-prolyl cis-trans	yes	N/A	0.750	0.723	0.592	1e-81
P0C1I2	315	Peptidyl-prolyl cis-trans	N/A	N/A	0.754	0.692	0.501	4e-67
Q26548	273	Peptidyl-prolyl cis-trans	N/A	N/A	0.660	0.699	0.502	5e-61
P29117	206	Peptidyl-prolyl cis-trans	no	N/A	0.422	0.592	0.704	4e-51
Q99KR7	206	Peptidyl-prolyl cis-trans	no	N/A	0.422	0.592	0.696	1e-50
P30405	207	Peptidyl-prolyl cis-trans	no	N/A	0.411	0.574	0.714	1e-50

>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1

 Score =  324 bits (830), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 160/256 (62%), Positives = 187/256 (73%), Gaps = 38/256 (14%)

Query: 66  RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
           R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH                   
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 107 -----QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLD----------PENQ 151
                +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+TL+          P+ +
Sbjct: 66  NMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAE 125

Query: 152 IDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG 211
               E +A     K + NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKG
Sbjct: 126 TQEGEPIAK----KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG 181

Query: 212 FGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGP 271
           FG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGP
Sbjct: 182 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 241

Query: 272 NTNGSQFFLCTTKTEW 287
           NTNGSQFFL   KT+W
Sbjct: 242 NTNGSQFFLTCDKTDW 257

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Combines RNA-binding and PPIase activities. May be involved in muscle- and brain-specific processes. May be involved in pre-mRNA splicing.
Homo sapiens (taxid: 9606)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1

 Score =  323 bits (827), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/256 (62%), Positives = 186/256 (72%), Gaps = 38/256 (14%)

Query: 66  RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
           R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH                   
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 107 -----QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLD----------PENQ 151
                +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+TL+          P+ +
Sbjct: 66  NMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAE 125

Query: 152 IDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG 211
               E  A     K + NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKG
Sbjct: 126 TQEGEPAAK----KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG 181

Query: 212 FGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGP 271
           FG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGP
Sbjct: 182 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 241

Query: 272 NTNGSQFFLCTTKTEW 287
           NTNGSQFFL   KT+W
Sbjct: 242 NTNGSQFFLTCDKTDW 257

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Combines RNA-binding and PPIase activities. May be involved in pre-mRNA splicing.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1

 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 160/252 (63%), Positives = 187/252 (74%), Gaps = 30/252 (11%)

Query: 66  RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
           R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH                   
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 107 -----QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQID---PAEKL 158
                +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+TL+   + +   P +  
Sbjct: 66  NMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKVE 125

Query: 159 AASIDPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQ 215
               +P  KK   NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++
Sbjct: 126 TQEGEPAVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFK 185

Query: 216 GSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNG 275
           GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNG
Sbjct: 186 GSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNG 245

Query: 276 SQFFLCTTKTEW 287
           SQFFL   KT+W
Sbjct: 246 SQFFLTCDKTDW 257

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Combines RNA-binding and PPIase activities. May be involved in pre-mRNA splicing.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2

 Score =  321 bits (823), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/252 (63%), Positives = 187/252 (74%), Gaps = 30/252 (11%)

Query: 66  RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
           R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH                   
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 107 -----QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKL--- 158
                +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+TL+   + +  E     
Sbjct: 66  NMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGPEPPKAE 125

Query: 159 AASIDPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQ 215
           A   +P  KK   NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++
Sbjct: 126 AQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFK 185

Query: 216 GSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNG 275
           GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNG
Sbjct: 186 GSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNG 245

Query: 276 SQFFLCTTKTEW 287
           SQFFL   KT+W
Sbjct: 246 SQFFLTCDKTDW 257

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Combines RNA-binding and PPIase activities. May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/248 (59%), Positives = 180/248 (72%), Gaps = 31/248 (12%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLA+EV +++LN AFIPFGD+ DIQMP DYE+++H                       
Sbjct: 10  VGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMND 69

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLA------ 159
            +L GR IRVNLAKP +V++ S KP+WA D WLQKHAG TL PE + + AEK+       
Sbjct: 70  SELCGRTIRVNLAKPVRVKEDSFKPIWADDDWLQKHAGATLQPEGEPE-AEKVETPSTGP 128

Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
           A I+   K+NPQV+ DI+IG  + GRI + LR D+VP+TAENFR LCTHE+G+GY+G SF
Sbjct: 129 AVIEKAEKRNPQVFFDIRIGGNDAGRIVMLLRADVVPKTAENFRQLCTHEQGYGYKGCSF 188

Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF 279
           HR+IP+FMCQGGDFTN+NGTGGKSIYG KF DENF LKH   G LSMANSG NTNGSQFF
Sbjct: 189 HRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFF 248

Query: 280 LCTTKTEW 287
           +CTTKT+W
Sbjct: 249 ICTTKTDW 256

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Combines RNA-binding and PPIase activities.

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I2|PPIE_RHIO9 Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp10 PE=3 SV=1

 Score =  254 bits (650), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 129/257 (50%), Positives = 164/257 (63%), Gaps = 39/257 (15%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           + GL ++V++ VL+AAFIPFG+++ +QM  D E + +                       
Sbjct: 16  ISGLDQQVNEAVLHAAFIPFGEIIAVQMATDTEIDSNNIHRGFGFVEYELAEDCQAAMDN 75

Query: 107 ----QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAE------ 156
               +L+G++I+V LAK   V  TS++ VW  ++WLQK+       E Q D  E      
Sbjct: 76  MHLSELYGKVIKVQLAKTINVTTTSNRAVWTDESWLQKYGNVEDVEEKQEDEKENNQETT 135

Query: 157 ---KLAASIDPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK 210
              K  +S  P ++K     +VY+DI+IG    GRI I+LR D+VP+TAENFR LCT E 
Sbjct: 136 SEKKEVSSYIPSSEKRGKKSRVYLDIQIGNTLAGRIEIELRGDVVPKTAENFRALCTGEA 195

Query: 211 GFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG 270
           GFGY+ SSFHRIIP FMCQGGDFT  NGTGGKSIYG KFEDENF+LKHTGPG LSMAN+G
Sbjct: 196 GFGYKKSSFHRIIPQFMCQGGDFTKGNGTGGKSIYGGKFEDENFVLKHTGPGTLSMANAG 255

Query: 271 PNTNGSQFFLCTTKTEW 287
            NTNGSQFF+CT KT W
Sbjct: 256 SNTNGSQFFICTEKTTW 272

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Combines RNA-binding and PPIase activities.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q26548|PPIE_SCHMA Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2

 Score =  234 bits (597), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/229 (50%), Positives = 150/229 (65%), Gaps = 38/229 (16%)

Query: 97  MPLDYETEKH------------------------QLFGRIIRVNLAKPQKVQQTSSKPVW 132
           MP+DY+TEKH                        ++FGR IRVN+A+P ++++  S+PVW
Sbjct: 1   MPMDYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVARPVRIREGWSRPVW 60

Query: 133 ASDTWLQKHA-----GETLDPENQIDPAEKLAASID--------PKTKKN-PQVYMDIKI 178
           + + WL+K+      G  LD  + ++P++      D         K K+N P+V+ DI+I
Sbjct: 61  SDENWLKKYGSAPLEGRKLDEPDIVNPSDTSENVEDLSDEEMRTKKQKRNLPRVFFDIRI 120

Query: 179 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNG 238
           G  + GRI ++LR D+VPRTAENFR LCT E+GFGY    FHR+IP FMCQGGDF   +G
Sbjct: 121 GNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDG 180

Query: 239 TGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           TGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTTK +W
Sbjct: 181 TGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDW 229

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Schistosoma mansoni (taxid: 6183)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P29117|PPIF_RAT Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 105/122 (86%)

Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
           + +NP VY+D+    Q +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP 
Sbjct: 41  SSQNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPA 100

Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
           FMCQ GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT
Sbjct: 101 FMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKT 160

Query: 286 EW 287
           +W
Sbjct: 161 DW 162

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q99KR7|PPIF_MOUSE Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Mus musculus GN=Ppif PE=1 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 104/122 (85%)

Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
           +  NP VY+D+    Q +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP 
Sbjct: 41  SSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPA 100

Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
           FMCQ GDFTNHNGTGG+SIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT
Sbjct: 101 FMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKT 160

Query: 286 EW 287
           +W
Sbjct: 161 DW 162

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30405|PPIF_HUMAN Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 103/119 (86%)

Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP VY+D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 45  NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 104

Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 105 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 163

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
189242406	302	PREDICTED: similar to putative peptidyl-	0.754	0.721	0.685	3e-94
357617301	303	putative peptidyl-prolyl cis-trans isome	0.754	0.719	0.668	1e-93
307189573	293	Peptidyl-prolyl cis-trans isomerase E [C	0.743	0.733	0.681	8e-93
156540750	247	PREDICTED: peptidyl-prolyl cis-trans iso	0.737	0.862	0.670	9e-93
350410727	361	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.740	0.592	0.674	2e-92
332028166	293	Peptidyl-prolyl cis-trans isomerase E [A	0.743	0.733	0.673	3e-92
328782599	331	PREDICTED: peptidyl-prolyl cis-trans iso	0.799	0.697	0.634	1e-91
383862957	326	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.743	0.659	0.657	2e-91
340720106	331	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.743	0.649	0.661	3e-91
380015375	293	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.740	0.730	0.666	3e-90

>gi|189242406|ref|XP_001810193.1| PREDICTED: similar to putative peptidyl-prolyl cis-trans isomerase E [Tribolium castaneum] gi|270016278|gb|EFA12724.1| hypothetical protein TcasGA2_TC002359 [Tribolium castaneum]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 170/248 (68%), Positives = 193/248 (77%), Gaps = 30/248 (12%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVDDKVLNAAFIPFGD+VDIQ+PLDYETEKH                       
Sbjct: 11  VGGLAEEVDDKVLNAAFIPFGDIVDIQIPLDYETEKHRGFAFIEFESAEDAAAAIDNMND 70

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETL-----DPENQIDPA-EKLA 159
            +LFGR IRVNLAKPQ++++ S++PVW+ DTWLQ+HAGET+     DP++    A +  A
Sbjct: 71  SELFGRTIRVNLAKPQRIKEGSTRPVWSEDTWLQQHAGETIGKTINDPDDGTKEATDNDA 130

Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
              D K  KNPQVY DIKIGK EVGRIT+ LR D+VPRTAENFRCLCTHEKG+G+QGS+F
Sbjct: 131 DKSDSKKVKNPQVYFDIKIGKTEVGRITMLLRADVVPRTAENFRCLCTHEKGYGFQGSTF 190

Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF 279
           HRIIPDFMCQGGDFTNHNGTGGKSIYG KF DENF LKH GPG LSMANSGPNTNGSQFF
Sbjct: 191 HRIIPDFMCQGGDFTNHNGTGGKSIYGRKFVDENFELKHVGPGTLSMANSGPNTNGSQFF 250

Query: 280 LCTTKTEW 287
           +CT KT+W
Sbjct: 251 ICTAKTDW 258

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617301|gb|EHJ70708.1| putative peptidyl-prolyl cis-trans isomerase E [Danaus plexippus]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 165/247 (66%), Positives = 194/247 (78%), Gaps = 29/247 (11%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVD+K+LNAAFIPFGDLVD+Q+PLDYE+EKH                       
Sbjct: 13  VGGLAEEVDEKILNAAFIPFGDLVDVQIPLDYESEKHRGFAFIEFENAEDAAAAIDNMND 72

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETL--DPENQIDPAEKLAASID 163
            +LFGR IRVN+A PQ++++ S++PVW+ D+WLQKHAG TL  D E+  +  EK  AS +
Sbjct: 73  SELFGRTIRVNIAAPQRIKEGSTRPVWSEDSWLQKHAGGTLNVDKEDSNNAKEKTEASNE 132

Query: 164 PKT---KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFH 220
           P     K+NPQVY DI +GKQE+GRI + LR D+VP+TAENF+ LCTHEKGFGYQGSSFH
Sbjct: 133 PAKPIEKRNPQVYFDISVGKQEIGRIIMMLRADVVPKTAENFKALCTHEKGFGYQGSSFH 192

Query: 221 RIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 280
           RIIPDFMCQGGDFTN+NGTGGKSIYG KFEDENF LKHTGPG+LSMANSGPNTNGSQFFL
Sbjct: 193 RIIPDFMCQGGDFTNNNGTGGKSIYGRKFEDENFTLKHTGPGILSMANSGPNTNGSQFFL 252

Query: 281 CTTKTEW 287
           CT KT+W
Sbjct: 253 CTAKTDW 259

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189573|gb|EFN73937.1| Peptidyl-prolyl cis-trans isomerase E [Camponotus floridanus]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 165/242 (68%), Positives = 191/242 (78%), Gaps = 27/242 (11%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVD+KVL+AAFIPFG++VD+Q+PLDYE+EKH                       
Sbjct: 11  VGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFEMAEDAAAAIDNMND 70

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPK 165
            +LFGR IRVN+AKPQK+++ SSKPVWA D WLQ+HAGETL  +   D A+    +   K
Sbjct: 71  SELFGRTIRVNIAKPQKIKEGSSKPVWADDAWLQEHAGETLKND---DNAKTNDVTQPKK 127

Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
            K+NPQVY DI IGKQEVGRI + LR D+VP+TAENFR LCTHEKG+GYQGS+FHRIIPD
Sbjct: 128 AKQNPQVYFDISIGKQEVGRIIMMLRADIVPKTAENFRALCTHEKGYGYQGSTFHRIIPD 187

Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
           FMCQGGDFTNHNGTGGKSIYGNKF+DENF LKHTGPG LSMANSGPNTNGSQFFLCT +T
Sbjct: 188 FMCQGGDFTNHNGTGGKSIYGNKFDDENFELKHTGPGTLSMANSGPNTNGSQFFLCTART 247

Query: 286 EW 287
           +W
Sbjct: 248 DW 249

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156540750|ref|XP_001599717.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like, partial [Nasonia vitripennis]

 Score =  345 bits (886), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 163/243 (67%), Positives = 193/243 (79%), Gaps = 30/243 (12%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------------ 106
           GGLAEEVD+K+LNAAFIPFG++VD+Q+PLDYE+EKH                        
Sbjct: 1   GGLAEEVDEKILNAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFEAAEDAASAIDNMNDS 60

Query: 107 QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDP-- 164
           +LFGR IRVN+AKPQK+++ SSKPVWA D WLQ+HAGETL+  ++   ++      DP  
Sbjct: 61  ELFGRTIRVNIAKPQKIKEGSSKPVWADDVWLQEHAGETLNTGDETSASK----DDDPNK 116

Query: 165 KTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIP 224
           K K+NPQVY DI +GKQE+GRI + LR D+VP+TAENFRCLCTHEKG+GYQGS+FHRIIP
Sbjct: 117 KGKQNPQVYFDISVGKQELGRIIMMLRADIVPKTAENFRCLCTHEKGYGYQGSTFHRIIP 176

Query: 225 DFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
           +FMCQGGDFTNHNGTGGKSIYGNKFEDENF LKHTGPG LSMANSGPNTNGSQFF+CT +
Sbjct: 177 EFMCQGGDFTNHNGTGGKSIYGNKFEDENFELKHTGPGTLSMANSGPNTNGSQFFMCTAR 236

Query: 285 TEW 287
           T+W
Sbjct: 237 TDW 239

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410727|ref|XP_003489121.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase E-like [Bombus impatiens]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 193/243 (79%), Gaps = 29/243 (11%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVD+KVL+AAFIPFG++VD+Q+PLDYE+EKH                       
Sbjct: 79  VGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFESAEDAAAAIDNMND 138

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPK 165
            +LFGR IRVN+AKPQK+++ SSKPVWA D WLQ+HAGETL    + D   K + ++ PK
Sbjct: 139 SELFGRTIRVNIAKPQKIKEGSSKPVWADDVWLQEHAGETL----KNDDNTKSSDTVQPK 194

Query: 166 T-KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIP 224
             K+NPQVY DI IGKQEVGRI + LR D+VP+TAENFR LCTHEKG+GYQGS+FHRIIP
Sbjct: 195 KGKQNPQVYFDISIGKQEVGRIIMMLRADIVPKTAENFRALCTHEKGYGYQGSTFHRIIP 254

Query: 225 DFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
           +FMCQGGDFTNHNGTGGKSIYGNKF+DENF LKHTGPG LSMANSGPNTNGSQFF+CT +
Sbjct: 255 EFMCQGGDFTNHNGTGGKSIYGNKFDDENFELKHTGPGTLSMANSGPNTNGSQFFICTAR 314

Query: 285 TEW 287
           T+W
Sbjct: 315 TDW 317

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028166|gb|EGI68217.1| Peptidyl-prolyl cis-trans isomerase E [Acromyrmex echinatior]

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 163/242 (67%), Positives = 190/242 (78%), Gaps = 27/242 (11%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVD+KVL+AAFIPFG++VD+Q+PLDYE+EKH                       
Sbjct: 11  VGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFETAEDAAAAIDNMND 70

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPK 165
            +LFGR IRVN+AKPQK+++ SSKPVWA D WLQ+HAGETL  +   D  +    +   K
Sbjct: 71  SELFGRTIRVNIAKPQKIKEGSSKPVWADDAWLQEHAGETLKND---DNTKTNDVAQSKK 127

Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
           +K+NPQVY DI IGKQEVGRI + LR D+VP+TAENFR LCTHEKG+GYQGS+ HRIIPD
Sbjct: 128 SKQNPQVYFDISIGKQEVGRIIMMLRADIVPKTAENFRALCTHEKGYGYQGSTLHRIIPD 187

Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
           FMCQGGDFTNHNGTGGKSIYGNKF+DENF LKHTGPG LSMANSGPNTNGSQFFLCT +T
Sbjct: 188 FMCQGGDFTNHNGTGGKSIYGNKFDDENFELKHTGPGTLSMANSGPNTNGSQFFLCTART 247

Query: 286 EW 287
           +W
Sbjct: 248 DW 249

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782599|ref|XP_003250169.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1 [Apis mellifera]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/260 (63%), Positives = 197/260 (75%), Gaps = 29/260 (11%)

Query: 53  FVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------ 106
           ++S +    +   R   +GGLAEEVD+KVL+AAFIPFG++VD+Q+PLDYE+EKH      
Sbjct: 32  YISILYIMSTNTKRTIYVGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFI 91

Query: 107 ------------------QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDP 148
                             +LFGR IRVN+AKPQK+++ SSKPVWA D WLQ+HAGETL  
Sbjct: 92  EFESAEDAAAAIDNMNDSELFGRTIRVNIAKPQKIKEGSSKPVWADDVWLQEHAGETL-- 149

Query: 149 ENQIDPAEKLAASIDPKT-KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCT 207
             + D   K    + PK  K+NPQVY DI IGKQE+GRI + LR D+VP+TAENFR LCT
Sbjct: 150 --KNDDNTKSNDMVQPKKGKQNPQVYFDISIGKQELGRIIMMLRADIVPKTAENFRALCT 207

Query: 208 HEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA 267
           HEKG+GYQGS+FHRIIP+FMCQGGDFTNHNGTGGKSIYGNKF+DENF LKHTGPG LSMA
Sbjct: 208 HEKGYGYQGSTFHRIIPEFMCQGGDFTNHNGTGGKSIYGNKFDDENFELKHTGPGTLSMA 267

Query: 268 NSGPNTNGSQFFLCTTKTEW 287
           NSGPNTNGSQFF+CT +T+W
Sbjct: 268 NSGPNTNGSQFFICTARTDW 287

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862957|ref|XP_003706949.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase E-like, partial [Megachile rotundata]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/242 (65%), Positives = 190/242 (78%), Gaps = 27/242 (11%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVD+K+L+AAFIPFG++VD+Q+PLDYE+EKH                       
Sbjct: 44  VGGLAEEVDEKILHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFESAEDAATAIDNMND 103

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPK 165
            +LFGR IRVN+AKPQK+++ SSKPVWA D WLQ+HAGETL  ++     + +      K
Sbjct: 104 SELFGRTIRVNIAKPQKIKEGSSKPVWADDAWLQEHAGETLKSDDNGKSGDTVQCK---K 160

Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
            K+NPQVY D+ IGKQEVGRI + LR D+VP+TAENFR LCTHEKG+GYQGS+FHRIIP+
Sbjct: 161 GKQNPQVYFDVTIGKQEVGRIIMMLRADIVPKTAENFRALCTHEKGYGYQGSTFHRIIPE 220

Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
           FMCQGGDFTNHNGTGGKSIYGNKF+DENF LKHTGPG LSMANSGPNTNGSQFF+CT +T
Sbjct: 221 FMCQGGDFTNHNGTGGKSIYGNKFDDENFELKHTGPGTLSMANSGPNTNGSQFFICTART 280

Query: 286 EW 287
           +W
Sbjct: 281 DW 282

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720106|ref|XP_003398484.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase E-like [Bombus terrestris]

 Score =  340 bits (873), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/242 (66%), Positives = 190/242 (78%), Gaps = 27/242 (11%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVD+KVL+AAFIPFG++VD+Q+PLDYE+EKH                       
Sbjct: 49  VGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFESAEDAAAAIDNMND 108

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPK 165
            +LFGR IRVN+AKPQK+++ SSKPVWA D WLQ+HAGETL  ++    ++ +      K
Sbjct: 109 SELFGRTIRVNIAKPQKIKEGSSKPVWADDVWLQEHAGETLKNDDNTKSSDTMQPK---K 165

Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
            K+NPQVY DI IGKQEVGRI + LR D+VP+TAENFR LCTHEKG+GYQGS+FHRIIP+
Sbjct: 166 GKQNPQVYFDISIGKQEVGRIIMMLRADIVPKTAENFRALCTHEKGYGYQGSTFHRIIPE 225

Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
           FMCQGGDFTNHNGTGGKSIYGNKF+DENF LKHTGPG LSMANSGPNTNGSQFF+ T +T
Sbjct: 226 FMCQGGDFTNHNGTGGKSIYGNKFDDENFELKHTGPGTLSMANSGPNTNGSQFFISTART 285

Query: 286 EW 287
           +W
Sbjct: 286 DW 287

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015375|ref|XP_003691678.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase E-like [Apis florea]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 162/243 (66%), Positives = 190/243 (78%), Gaps = 29/243 (11%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVD+KVL+AAFIPFG++VD+Q+PLDYE+EKH                       
Sbjct: 11  VGGLAEEVDEKVLHAAFIPFGEIVDVQIPLDYESEKHRGFAFIEFESAEDAAAAIDNMND 70

Query: 107 -QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPK 165
            +LFGR IRVN+AKPQK+++ SSKPVWA D WLQ+HAGETL    + D   K    + PK
Sbjct: 71  SELFGRTIRVNIAKPQKIKEGSSKPVWADDVWLQEHAGETL----KNDDNAKSNDIVQPK 126

Query: 166 T-KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIP 224
             K+NPQVY DI IGKQE+GRI + LR D+VP+TAENFR LCTHEKG+GYQGS+FHRIIP
Sbjct: 127 KGKQNPQVYFDISIGKQELGRIIMMLRADIVPKTAENFRALCTHEKGYGYQGSTFHRIIP 186

Query: 225 DFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
           +FMCQGGDFTNHNGTGGKSIYG KF+DENF LKHTGPG LSMANSGPNTNGSQFF+CT +
Sbjct: 187 EFMCQGGDFTNHNGTGGKSIYGXKFDDENFELKHTGPGTLSMANSGPNTNGSQFFICTAR 246

Query: 285 TEW 287
           T+W
Sbjct: 247 TDW 249

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
UNIPROTKB|E9PEQ6	250	PPIE "Peptidyl-prolyl cis-tran	0.543	0.628	0.693	9.7e-74
MGI|MGI:1917118	301	Ppie "peptidylprolyl isomerase	0.698	0.671	0.645	1.4e-69
UNIPROTKB|F1SV03	301	PPIE "Uncharacterized protein"	0.698	0.671	0.645	1.8e-69
UNIPROTKB|Q5TGA3	314	PPIE "Peptidyl-prolyl cis-tran	0.698	0.643	0.641	3e-69
UNIPROTKB|Q9UNP9	301	PPIE "Peptidyl-prolyl cis-tran	0.698	0.671	0.641	3e-69
UNIPROTKB|A4FV72	301	PPIE "Peptidyl-prolyl cis-tran	0.698	0.671	0.641	3.8e-69
UNIPROTKB|G3MZS9	301	PPIE "Peptidyl-prolyl cis-tran	0.698	0.671	0.641	3.8e-69
UNIPROTKB|E2QVB5	301	PPIE "Uncharacterized protein"	0.698	0.671	0.641	3.8e-69
UNIPROTKB|J9P7U8	343	PPIE "Uncharacterized protein"	0.698	0.588	0.641	3.8e-69
UNIPROTKB|E9PKY5	213	PPIE "Peptidyl-prolyl cis-tran	0.626	0.849	0.684	4.4e-68

UNIPROTKB|E9PEQ6 PPIE "Peptidyl-prolyl cis-trans isomerase" [Homo sapiens (taxid:9606)]

 Score = 607 (218.7 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
 Identities = 113/163 (69%), Positives = 130/163 (79%)

Query:   131 VWASDTWLQKHAGETLDPENQIDPAEKLAASI---DPKTKK---NPQVYMDIKIGKQEVG 184
             VW+ D WL+K +G+TL+   + + +E   A     +P  KK   NPQVYMDIKIG +  G
Sbjct:    44 VWSDDDWLKKFSGKTLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAG 103

Query:   185 RITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSI 244
             RI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSI
Sbjct:   104 RIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSI 163

Query:   245 YGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             YG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   164 YGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 206

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

MGI|MGI:1917118 Ppie "peptidylprolyl isomerase E (cyclophilin E)" [Mus musculus (taxid:10090)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 135/209 (64%), Positives = 159/209 (76%)

Query:    85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGE 144
             AF+ F    D    +D   E  +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+
Sbjct:    50 AFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK 108

Query:   145 TLDP---ENQIDPAEKLAASIDPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRT 198
             TL+    E   +P +  A   +P  KK   NPQVYMDIKIG +  GRI + LR D+VP T
Sbjct:   109 TLEENKEEEGPEPPKAEAQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT 168

Query:   199 AENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH 258
             AENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKH
Sbjct:   169 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH 228

Query:   259 TGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             TGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   229 TGPGLLSMANSGPNTNGSQFFLTCDKTDW 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|F1SV03 PPIE "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 135/209 (64%), Positives = 158/209 (75%)

Query:    85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGE 144
             AF+ F    D    +D   E  +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+
Sbjct:    50 AFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK 108

Query:   145 TLDP---ENQIDPAEKLAASIDPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRT 198
             TL+    E   +P +      +P  KK   NPQVYMDIKIG +  GRI I LR D+VP T
Sbjct:   109 TLEENKEEEGSEPPKGETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMT 168

Query:   199 AENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH 258
             AENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKH
Sbjct:   169 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH 228

Query:   259 TGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             TGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   229 TGPGLLSMANSGPNTNGSQFFLTCDKTDW 257

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5TGA3 PPIE "Peptidyl-prolyl cis-trans isomerase E" [Homo sapiens (taxid:9606)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 134/209 (64%), Positives = 159/209 (76%)

Query:    85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGE 144
             AF+ F    D    +D   E  +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+
Sbjct:    50 AFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK 108

Query:   145 TLDPENQIDPAEKLAASI---DPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRT 198
             TL+   + + +E   A     +P  KK   NPQVYMDIKIG +  GRI + LR D+VP T
Sbjct:   109 TLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT 168

Query:   199 AENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH 258
             AENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKH
Sbjct:   169 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH 228

Query:   259 TGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             TGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   229 TGPGLLSMANSGPNTNGSQFFLTCDKTDW 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9UNP9 PPIE "Peptidyl-prolyl cis-trans isomerase E" [Homo sapiens (taxid:9606)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 134/209 (64%), Positives = 159/209 (76%)

Query:    85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGE 144
             AF+ F    D    +D   E  +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+
Sbjct:    50 AFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK 108

Query:   145 TLDPENQIDPAEKLAASI---DPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRT 198
             TL+   + + +E   A     +P  KK   NPQVYMDIKIG +  GRI + LR D+VP T
Sbjct:   109 TLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT 168

Query:   199 AENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH 258
             AENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKH
Sbjct:   169 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH 228

Query:   259 TGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             TGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   229 TGPGLLSMANSGPNTNGSQFFLTCDKTDW 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=TAS

UNIPROTKB|A4FV72 PPIE "Peptidyl-prolyl cis-trans isomerase E" [Bos taurus (taxid:9913)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 134/209 (64%), Positives = 160/209 (76%)

Query:    85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGE 144
             AF+ F    D    +D   E  +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+
Sbjct:    50 AFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK 108

Query:   145 TLDPENQIDPAE--KLAASI-DPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRT 198
             TL+   + + +E  K+     +P  KK   NPQVYMDIKIG +  GRI + LR D+VP T
Sbjct:   109 TLEENKEEEGSEPPKVETQEGEPAVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT 168

Query:   199 AENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH 258
             AENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKH
Sbjct:   169 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH 228

Query:   259 TGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             TGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   229 TGPGLLSMANSGPNTNGSQFFLTCDKTDW 257

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|G3MZS9 PPIE "Peptidyl-prolyl cis-trans isomerase E" [Bos taurus (taxid:9913)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 134/209 (64%), Positives = 160/209 (76%)

Query:    85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGE 144
             AF+ F    D    +D   E  +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+
Sbjct:    50 AFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK 108

Query:   145 TLDPENQIDPAE--KLAASI-DPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRT 198
             TL+   + + +E  K+     +P  KK   NPQVYMDIKIG +  GRI + LR D+VP T
Sbjct:   109 TLEENKEEEGSEPPKVETQEGEPTVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT 168

Query:   199 AENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH 258
             AENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKH
Sbjct:   169 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH 228

Query:   259 TGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             TGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   229 TGPGLLSMANSGPNTNGSQFFLTCDKTDW 257

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QVB5 PPIE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 134/209 (64%), Positives = 160/209 (76%)

Query:    85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGE 144
             AF+ F    D    +D   E  +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+
Sbjct:    50 AFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK 108

Query:   145 TLDPENQIDPAE--KLAASI-DPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRT 198
             TL+   + + +E  K+     +P  KK   NPQVYMDIKIG +  GRI + LR D+VP T
Sbjct:   109 TLEENKEEEGSEPPKVETQEGEPAAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT 168

Query:   199 AENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH 258
             AENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKH
Sbjct:   169 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH 228

Query:   259 TGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             TGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   229 TGPGLLSMANSGPNTNGSQFFLTCDKTDW 257

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P7U8 PPIE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 134/209 (64%), Positives = 160/209 (76%)

Query:    85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGE 144
             AF+ F    D    +D   E  +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+
Sbjct:    50 AFVEFELAEDAAAAIDNMNES-ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK 108

Query:   145 TLDPENQIDPAE--KLAASI-DPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRT 198
             TL+   + + +E  K+     +P  KK   NPQVYMDIKIG +  GRI + LR D+VP T
Sbjct:   109 TLEENKEEEGSEPPKVETQEGEPAAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMT 168

Query:   199 AENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH 258
             AENFRCLCTHEKGFG++GSSFHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKH
Sbjct:   169 AENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKH 228

Query:   259 TGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
             TGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct:   229 TGPGLLSMANSGPNTNGSQFFLTCDKTDW 257

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E9PKY5 PPIE "Peptidyl-prolyl cis-trans isomerase" [Homo sapiens (taxid:9606)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 128/187 (68%), Positives = 151/187 (80%)

Query:   107 QLFGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASI---D 163
             +LFGR IRVNLAKP ++++ SS+PVW+ D WL+K +G+TL+   + + +E   A     +
Sbjct:     5 ELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAETQEGE 64

Query:   164 PKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFH 220
             P  KK   NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFH
Sbjct:    65 PIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFH 124

Query:   221 RIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 280
             RIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL
Sbjct:   125 RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 184

Query:   281 CTTKTEW 287
                KT+W
Sbjct:   185 TCDKTDW 191

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34791	CP20C_ARATH	5, ., 2, ., 1, ., 8	0.6825	0.4359	0.4846	yes	N/A
A4FV72	PPIE_BOVIN	5, ., 2, ., 1, ., 8	0.6349	0.7681	0.7375	yes	N/A
Q5R723	PPIE_PONAB	5, ., 2, ., 1, ., 8	0.625	0.7543	0.7242	yes	N/A
Q9QZH3	PPIE_MOUSE	5, ., 2, ., 1, ., 8	0.6388	0.7681	0.7375	yes	N/A
Q9V3G3	PPIE_DROME	5, ., 2, ., 1, ., 8	0.5927	0.7508	0.7233	yes	N/A
Q54SM3	PPIA_DICDI	5, ., 2, ., 1, ., 8	0.6044	0.4394	0.7094	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.921
4th Layer	5.2.1.8	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	289
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	2e-81
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	3e-63
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	8e-58
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	8e-42
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	3e-41
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	3e-38
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	6e-37
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	4e-34
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	1e-32
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	4e-32
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	3e-23
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	4e-23
cd12347	73	cd12347, RRM_PPIE, RNA recognition motif in cyclop	2e-19
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	2e-16
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	8e-13
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	1e-12
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	2e-12
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	7e-12
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	1e-11
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	3e-11
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	1e-09
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	9e-07
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	8e-06
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	1e-05
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	1e-05
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	2e-05
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	3e-05
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	5e-05
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	7e-05
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	1e-04
cd12334	74	cd12334, RRM1_SF3B4, RNA recognition motif 1 in sp	8e-04
smart00360	73	smart00360, RRM, RNA recognition motif	0.003

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  242 bits (620), Expect = 2e-81
 Identities = 86/123 (69%), Positives = 99/123 (80%), Gaps = 5/123 (4%)

Query: 170 PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIP 224
           P+V+ DI IG +  GRI ++L  D+VP+TAENFR LCT EKG     FGY+GS+FHR+IP
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIP 60

Query: 225 DFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
           DFM QGGDFT  NGTGGKSIYG KF DENF LKHTGPG+LSMAN+GPNTNGSQFF+ T K
Sbjct: 61  DFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVK 120

Query: 285 TEW 287
           T W
Sbjct: 121 TPW 123

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  196 bits (501), Expect = 3e-63
 Identities = 78/130 (60%), Positives = 90/130 (69%), Gaps = 6/130 (4%)

Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE------KGFGYQGS 217
           P+  K P+V+ DI I     GRI  +L  D+ P+TAENFR LC  +      K   Y+GS
Sbjct: 10  PEMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGS 69

Query: 218 SFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQ 277
            FHRIIP FMCQGGD TNHNGTGG+SIYG KF DENF LKH  PG+LSMAN+GPNTNGSQ
Sbjct: 70  IFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQ 129

Query: 278 FFLCTTKTEW 287
           FF+ T    W
Sbjct: 130 FFITTVPCPW 139

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  183 bits (465), Expect = 8e-58
 Identities = 77/129 (59%), Positives = 90/129 (69%), Gaps = 5/129 (3%)

Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---KGF--GYQGSS 218
           P   KNP V+ D+ IG    GRI ++L  D+ P+TAENFR  CT E    G   GY+G  
Sbjct: 13  PPNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQ 72

Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
           FHR+I DFM QGGDF   +GTG  SIYG+KFEDENFI KHTGPG+LSMANSGPNTNG QF
Sbjct: 73  FHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQF 132

Query: 279 FLCTTKTEW 287
           F+   K +W
Sbjct: 133 FITCAKCDW 141

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  140 bits (356), Expect = 8e-42
 Identities = 59/106 (55%), Positives = 66/106 (62%), Gaps = 6/106 (5%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
            GRI I+L  D  P+T ENF  L     GF Y G++FHR+IP FM QGGD T   G  G 
Sbjct: 6   KGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGG--GG 60

Query: 243 SIYGNKFEDENFILK-HTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           S  G KF DENF LK H   G LSMAN+GPNTNGSQFF+ T  T  
Sbjct: 61  SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPH 106

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  139 bits (353), Expect = 3e-41
 Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 9/113 (7%)

Query: 178 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHN 237
           I +   G ITI+L  D  P+T  NF  L     GF Y G+ FHR+IP FM QGGD T  +
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLVKE--GF-YDGTIFHRVIPGFMIQGGDPTGGD 59

Query: 238 GTGGKSIYGNKFEDENFILKH--TGPGVLSMANSG-PNTNGSQFFLCTTKTEW 287
           GTGG       F+DENF L       G LSMA +G PN+NGSQFF+      +
Sbjct: 60  GTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPF 109

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  131 bits (332), Expect = 3e-38
 Identities = 51/115 (44%), Positives = 61/115 (53%), Gaps = 11/115 (9%)

Query: 173 YMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGD 232
           ++DI       GRI I+L  D  P+T ENF  LC  +KGF Y G+ FHR+IP FM QGGD
Sbjct: 1   FLDITTNL---GRIVIELFGDEAPKTVENFLSLC--KKGF-YDGTIFHRVIPGFMIQGGD 54

Query: 233 FTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
            T     G +SI      DE         G LSMA SGPN+ GSQFF+       
Sbjct: 55  PTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPH 104

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  128 bits (323), Expect = 6e-37
 Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 5/106 (4%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G IT++L ++  P+T +NF  L    +G+ Y G+ FHR+I DFM QGGD T   G GG 
Sbjct: 6   MGEITLELYWNHAPKTCKNFYELAK--RGY-YNGTIFHRLIKDFMIQGGDPTG-TGRGGA 61

Query: 243 SIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           SIYG KFEDE +  LKHTG G+LSMAN+GPNTNGSQFF+    T W
Sbjct: 62  SIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPW 107

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  121 bits (304), Expect = 4e-34
 Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 5/105 (4%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G I I+L  +  P+T ENF    TH +   Y  + FHR+I  FM Q GD T  +GTGG+S
Sbjct: 7   GDIHIRLFPEEAPKTVENF---TTHARNGYYNNTIFHRVIKGFMIQTGDPTG-DGTGGES 62

Query: 244 IYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           I+G +FEDE +  LKH  P  LSMAN+GPNTNGSQFF+ T  T W
Sbjct: 63  IWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPW 107

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  117 bits (295), Expect = 1e-32
 Identities = 54/98 (55%), Positives = 66/98 (67%), Gaps = 5/98 (5%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G + ++L  D  P+  ENF  LC  +KG+ Y G+ FHR I +FM QGGD T   G GG+S
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTG-TGRGGES 64

Query: 244 IYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 280
           I+G  F+DE    L H G GVLSMANSGPNTNGSQFF+
Sbjct: 65  IWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFI 102

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  115 bits (291), Expect = 4e-32
 Identities = 54/99 (54%), Positives = 63/99 (63%), Gaps = 5/99 (5%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G I I+L  D  P+  ENF  LC    G+ Y G  FHR I  FM Q GD T   G GG+
Sbjct: 9   LGDIKIELFCDDCPKACENFLALCA--SGY-YNGCIFHRNIKGFMVQTGDPTG-TGKGGE 64

Query: 243 SIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFL 280
           SI+G KFEDE    LKH   GV+SMAN+GPNTNGSQFF+
Sbjct: 65  SIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFI 103

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score = 93.2 bits (232), Expect = 3e-23
 Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 5/106 (4%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
            G I I+L     P+   NF  LC   +G+ Y  + FHR++P F+ QGGD T   GTGG+
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCL--EGY-YDNTIFHRVVPGFIIQGGDPTG-TGTGGE 69

Query: 243 SIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           SIYG  F+DE +  L+    G++ MAN+G ++NGSQFF    K + 
Sbjct: 70  SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADE 115

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score = 92.7 bits (231), Expect = 4e-23
 Identities = 35/58 (60%), Positives = 43/58 (74%), Gaps = 5/58 (8%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDF 53
           DI IG +  GRI ++L  D+VP+TAENFR LCT EKG     FGY+GS+FHR+IPDF
Sbjct: 5  FDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDF 62

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240793 cd12347, RRM_PPIE, RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins

 Score = 79.6 bits (197), Expect = 2e-19
 Identities = 38/71 (53%), Positives = 45/71 (63%), Gaps = 24/71 (33%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH----------------------- 106
           +GGLAEEVD+KVL+AAFIPFGD+ DIQ+PLDYET+KH                       
Sbjct: 3   VGGLAEEVDEKVLHAAFIPFGDIKDIQIPLDYETQKHRGFAFVEFEEPEDAAAAIDNMNE 62

Query: 107 -QLFGRIIRVN 116
            +LFGR IRVN
Sbjct: 63  SELFGRTIRVN 73

This subfamily corresponds to the RRM of Cyp33, also termed peptidyl-prolyl cis-trans isomerase E (PPIase E), or cyclophilin E, or rotamase E. Cyp33 is a nuclear RNA-binding cyclophilin with an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal PPIase domain. Cyp33 possesses RNA-binding activity and preferentially binds to polyribonucleotide polyA and polyU, but hardly to polyG and polyC. It binds specifically to mRNA, which can stimulate its PPIase activity. Moreover, Cyp33 interacts with the third plant homeodomain (PHD3) zinc finger cassette of the mixed lineage leukemia (MLL) proto-oncoprotein and a poly-A RNA sequence through its RRM domain. It further mediates downregulation of the expression of MLL target genes HOXC8, HOXA9, CDKN1B, and C-MYC, in a proline isomerase-dependent manner. Cyp33 also possesses a PPIase activity that catalyzes cis-trans isomerization of the peptide bond preceding a proline, which has been implicated in the stimulation of folding and conformational changes in folded and unfolded proteins. The PPIase activity can be inhibited by the immunosuppressive drug cyclosporin A. . Length = 73

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G + I L  D  P    NF  LC   K   Y    F+ +  DF+ Q GD T   G GG+
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLC---KLKYYNFCLFYNVQKDFIAQTGDPTG-TGAGGE 61

Query: 243 SIYGNK-------FEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
           SIY          FE E   +LKH+  G +SM N+G N NGSQF++   
Sbjct: 62  SIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLG 110

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score = 65.3 bits (159), Expect = 8e-13
 Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 2  DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE------KGFGYQGSSFHRIIPDFV 54
          DI I     GRI  +L  D+ P+TAENFR LC  +      K   Y+GS FHRIIP F+
Sbjct: 21 DISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFM 79

Length = 183

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 6/54 (11%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +DI       GRI I+L  D  P+T ENF  LC  +KGF Y G+ FHR+IP F+
Sbjct: 2  LDITTNL---GRIVIELFGDEAPKTVENFLSLC--KKGF-YDGTIFHRVIPGFM 49

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 5/58 (8%)

Query: 2  DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---KGF--GYQGSSFHRIIPDFV 54
          D+ IG    GRI ++L  D+ P+TAENFR  CT E    G   GY+G  FHR+I DF+
Sbjct: 24 DVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFM 81

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score = 61.5 bits (150), Expect = 7e-12
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
           GRI I+L  D  P+T ENF  L     GF Y G++FHR+IP F+
Sbjct: 6  KGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFM 47

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 13/117 (11%)

Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG--------FGYQGSSFHRI 222
           + ++DI IG    GR+  +L  D+VP T ENFR L T   G          Y  +  H +
Sbjct: 54  RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Query: 223 IPDF-MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
             +  +   G+  + N     S  G    DE +  +HT  G+L+M + GP+T+GS F
Sbjct: 114 DRNNNIIVLGELDSFN----VSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVF 166

Length = 249

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 5  IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          I +   G ITI+L  D  P+T  NF  L     GF Y G+ FHR+IP F+
Sbjct: 3  ILETNKGDITIELYPDKAPKTVANFLQLVKE--GF-YDGTIFHRVIPGFM 49

Length = 158

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G I ++L  D  P T ENF       KGF Y  + FHR+I  F+ QGG FT         
Sbjct: 7   GDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFT----PDLAQ 59

Query: 244 IYGNK--FEDENFILKHTGPGVLSMANSG-PNTNGSQFFL 280
               K    +    L +T  G ++MA +  P++  SQFF+
Sbjct: 60  KETLKPIKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFI 98

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G I I+   D  P T +NF   C   +GF Y  + FHR+I  FM QGG F    G   K+
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKA 63

Query: 244 IYGNKFEDENFILKHTGPGVLSMANSG-PNTNGSQFFL 280
                  + N  LK+T  G L+MA +  P++  +QFF+
Sbjct: 64  TKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFI 100

Length = 164

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 32/144 (22%)

Query: 10  VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV--------------S 55
           +G IT++L ++  P+T +NF  L    +G+ Y G+ FHR+I DF+              S
Sbjct: 6   MGEITLELYWNHAPKTCKNFYELAK--RGY-YNGTIFHRLIKDFMIQGGDPTGTGRGGAS 62

Query: 56  FMTK------HQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLF 109
              K      H  LK   + +  +A    +   +  FI          P  +   KH +F
Sbjct: 63  IYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLA-------PTPWLDGKHTIF 115

Query: 110 GRIIR--VNLAKPQKVQQTSSKPV 131
           GR+ +    +    +VQ  + +P+
Sbjct: 116 GRVSKGMKVIENMVEVQTQTDRPI 139

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +G I I+L  D  P+  ENF  LC    G+ Y G  FHR I  F+
Sbjct: 9  LGDIKIELFCDDCPKACENFLALCA--SGY-YNGCIFHRNIKGFM 50

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 39/123 (31%), Positives = 49/123 (39%), Gaps = 30/123 (24%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTG--- 240
           G ITI L     P TA NF  L   E+GF Y G  FHR+   F+ Q GD    N      
Sbjct: 7   GTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDP 63

Query: 241 -----------------GKSIYGNKFE-----DENFILKHTGPGVLSMANS--GPNTNGS 276
                             + +YG   E     DE  +L     G ++MA +   PN+  S
Sbjct: 64  ETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASS 123

Query: 277 QFF 279
           QFF
Sbjct: 124 QFF 126

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I ++L  D  P T ENF       KGF Y  + FHR+I  FV
Sbjct: 7  GDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFV 47

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFT 234
            G I ++L     P + +NF  +     GF Y  ++FHR+IP FM QGG FT
Sbjct: 37  AGNIELELNSQKAPVSVKNF--VDYVNSGF-YNNTTFHRVIPGFMIQGGGFT 85

Length = 190

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          G I I+L  +  P+T ENF    TH +   Y  + FHR+I  F
Sbjct: 7  GDIHIRLFPEEAPKTVENF---TTHARNGYYNNTIFHRVIKGF 46

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G + ++L  D  P+  ENF  LC  +KG+ Y G+ FHR I +F+
Sbjct: 9  GDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFM 49

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG--------FGYQGSSFHRI 49
           +DI IG    GR+  +L  D+VP T ENFR L T   G          Y  +  H +
Sbjct: 57  LDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Length = 249

>gnl|CDD|240780 cd12334, RRM1_SF3B4, RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 24/71 (33%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQ---------------------- 107
           +G L E+V +++L   FI  G +V++ +P D  T+ HQ                      
Sbjct: 3   VGNLDEKVTEELLWELFIQAGPVVNVHIPKDRVTQAHQGYGFVEFLSEEDADYAIKIMNM 62

Query: 108 --LFGRIIRVN 116
             L+G+ IRVN
Sbjct: 63  IKLYGKPIRVN 73

This subfamily corresponds to the RRM1 of SF3B4, also termed pre-mRNA-splicing factor SF3b 49 kDa (SF3b50), or spliceosome-associated protein 49 (SAP 49). SF3B4 a component of the multiprotein complex splicing factor 3b (SF3B), an integral part of the U2 small nuclear ribonucleoprotein (snRNP) and the U11/U12 di-snRNP. SF3B is essential for the accurate excision of introns from pre-messenger RNA, and is involved in the recognition of the pre-mRNA's branch site within the major and minor spliceosomes. SF3B4 functions to tether U2 snRNP with pre-mRNA at the branch site during spliceosome assembly. It is an evolutionarily highly conserved protein with orthologs across diverse species. SF3B4 contains two closely adjacent N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It binds directly to pre-mRNA and also interacts directly and highly specifically with another SF3B subunit called SAP 145. . Length = 74

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRI 112
           +G L  +  ++ L   F  FG +  +++  D ET K + F  +
Sbjct: 4   VGNLPPDTTEEELRELFSKFGKVESVRLVRDKETGKSKGFAFV 46

Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG0111|consensus	298		100.0
KOG0546|consensus	372		100.0
KOG0880|consensus	217		100.0
KOG0546|consensus	372		100.0
KOG0880|consensus	217		100.0
KOG0879|consensus	177		100.0
KOG0881|consensus	164		100.0
KOG0882|consensus	558		100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
KOG0879|consensus	177		100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
KOG0881|consensus	164		100.0
PTZ00060	183	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0111|consensus	298		100.0
PTZ00221	249	cyclophilin; Provisional	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	99.98
KOG0883|consensus	518		99.97
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	99.97
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	99.97
KOG0884|consensus	161		99.97
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	99.97
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	99.97
PTZ00221	249	cyclophilin; Provisional	99.97
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	99.97
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	99.97
KOG0882|consensus	558		99.97
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	99.97
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	99.97
PTZ00060	183	cyclophilin; Provisional	99.97
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	99.97
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	99.97
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	99.97
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	99.96
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	99.96
KOG0885|consensus	439		99.96
KOG0865|consensus	167		99.96
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	99.96
KOG0883|consensus	518		99.96
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	99.96
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.96
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	99.96
KOG0884|consensus	161		99.95
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	99.95
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	99.95
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.95
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	99.95
KOG0865|consensus	167		99.95
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	99.94
KOG0885|consensus	439		99.94
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	99.93
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	99.93
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	99.92
KOG0415|consensus	479		99.9
KOG0415|consensus	479		99.87
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	97.61
PRK00969	508	hypothetical protein; Provisional	97.53
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.7
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.37
PRK00969	508	hypothetical protein; Provisional	95.57
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.39

>KOG0111|consensus

Probab=100.00  E-value=1.5e-52  Score=352.79  Aligned_cols=224  Identities=67%  Similarity=1.136  Sum_probs=205.5

Q ss_pred             CCcccCCCCCccccchhhhhcccCCCCCeEEecCCCCCCCCCCC------------------------ccceEEEecccc
Q psy10327         64 KSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQ------------------------LFGRIIRVNLAK  119 (289)
Q Consensus        64 ~g~~~~~~~~~~e~~~g~~~~~~~~~Gs~fii~~~~p~ldg~~~------------------------vFG~Vi~mdvv~  119 (289)
                      ..+.+|.+.+.+|.+..+||.||+|+|.+..|..|+++-.++|.                        +|||+|.++.++
T Consensus         9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak   88 (298)
T KOG0111|consen    9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK   88 (298)
T ss_pred             cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence            35678999999999999999999999999999999988888887                        899999999999


Q ss_pred             CcccccCCCcccccchhhhhhccCCCCCCCCCCChhhhhhccCCCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhH
Q psy10327        120 PQKVQQTSSKPVWASDTWLQKHAGETLDPENQIDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTA  199 (289)
Q Consensus       120 ~i~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~  199 (289)
                      ..++++++.+|+|.|++||++++. ++.++..+++..++.++- ..++.+|+||++++|.+...|+|+++|..|..|+|+
T Consensus        89 P~kikegsqkPvWADDdWlkk~~g-~~q~E~e~eaeK~et~s~-kaa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmta  166 (298)
T KOG0111|consen   89 PEKIKEGSQKPVWADDDWLKKQQG-EAQAEKEIEAEKAETESK-KAAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTA  166 (298)
T ss_pred             CccccCCCCCCcccCcHHHHHhcc-ccccccccchhhhcCccc-hhhhhChHhhhheeecccccceEEEeecccCChhhh
Confidence            999999999999999999999994 333555555444433322 466889999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEE
Q psy10327        200 ENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF  279 (289)
Q Consensus       200 ~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFf  279 (289)
                      +||..||+|++||+|+|++||||||.||+||||++.++|+||.|+||.+|.||++.|+|+.+|+|||||+|+|+||||||
T Consensus       167 enfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf~lkht~pgtlsmansgantngsqff  246 (298)
T KOG0111|consen  167 ENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFF  246 (298)
T ss_pred             hhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccceeeecCCCceeeccccCCCCCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCC
Q psy10327        280 LCTTKTEWNI  289 (289)
Q Consensus       280 I~l~~~~~LD  289 (289)
                      ||+....|||
T Consensus       247 ict~ktdwld  256 (298)
T KOG0111|consen  247 ICTEKTDWLD  256 (298)
T ss_pred             EEeccccccc
Confidence            9999999998

>KOG0546|consensus

Probab=100.00  E-value=2.1e-43  Score=318.00  Aligned_cols=122  Identities=62%  Similarity=1.012  Sum_probs=119.5

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCc--------cccCCceEEEecCcEEEeCCCCCCCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPDFMCQGGDFTNHNGT  239 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~--------~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~  239 (289)
                      .+|+|||||+|++.+.|+|+||||.|.||+||+||+.||+|++|.        +|+|+.|||||++|||||||++.++|+
T Consensus         7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt   86 (372)
T KOG0546|consen    7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT   86 (372)
T ss_pred             CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence            689999999999999999999999999999999999999999874        599999999999999999999999999


Q ss_pred             CCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ||.||||..|+||+|.++|+++++|||||.||||||||||||+.++||||
T Consensus        87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLd  136 (372)
T KOG0546|consen   87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLD  136 (372)
T ss_pred             CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcC
Confidence            99999999999999999999999999999999999999999999999998

>KOG0880|consensus

Probab=100.00  E-value=9.1e-42  Score=283.34  Aligned_cols=127  Identities=64%  Similarity=1.072  Sum_probs=124.5

Q ss_pred             CCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhh-ccCCccccCCceEEEecCcEEEeCCCCCCCCCCC
Q psy10327        163 DPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCT-HEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGG  241 (289)
Q Consensus       163 ~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~-g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~  241 (289)
                      .|.++.+.+|||||.+.+...|+|+|+||+..+|+||+||..||+ +.++++|.+++||||+|+|||||||++.++|+|+
T Consensus        33 ~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg  112 (217)
T KOG0880|consen   33 EPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGG  112 (217)
T ss_pred             CCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCC
Confidence            678889999999999999999999999999999999999999999 8899999999999999999999999999999999


Q ss_pred             cccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        242 KSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       242 ~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .++||..|+||++.++|+++|.|||||.|||+||||||||+...||||
T Consensus       113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLD  160 (217)
T KOG0880|consen  113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLD  160 (217)
T ss_pred             eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCcccc
Confidence            999999999999999999999999999999999999999999999998

>KOG0546|consensus

Probab=100.00  E-value=3.8e-42  Score=309.83  Aligned_cols=126  Identities=33%  Similarity=0.474  Sum_probs=115.7

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCc--------ccCCCeeeeecccceecccccccc---CCcccC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPDFVSFMTKHQSL---KSRFSN   69 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~--------~Y~g~~f~rv~~~~~iq~Gd~~~~---~g~~~~   69 (289)
                      |||+|++.+.|||+||||.|.||+||+||++||||+.|.        +|+|+.|||||++|||||||++.+   ||+|||
T Consensus        13 fDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIY   92 (372)
T KOG0546|consen   13 FDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIY   92 (372)
T ss_pred             EEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCccccc
Confidence            799999999999999999999999999999999999984        499999999999999999999854   589999


Q ss_pred             CCCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         70 LGGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        70 ~~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      |+.|+||+      .+++|+||+   .+||| |||++.|+|||||+|+|||+||+ +.||+.|+....
T Consensus        93 G~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~  160 (372)
T KOG0546|consen   93 GEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLET  160 (372)
T ss_pred             ccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhcccc
Confidence            99999998      379999994   67898 66777899999999999999998 999999987444

>KOG0880|consensus

Probab=100.00  E-value=2.8e-40  Score=274.50  Aligned_cols=130  Identities=33%  Similarity=0.515  Sum_probs=118.5

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhc-cCCCcccCCCeeeeecccceecccccccc---CCcccCCCCCccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCT-HEKGFGYQGSSFHRIIPDFVSFMTKHQSL---KSRFSNLGGLAEE   76 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~-g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~---~g~~~~~~~~~~e   76 (289)
                      |||.++++..|||+|+||++.+|+||+||++||+ ++++++|++++||||+|+|||||||++.+   +|.||||+.|+||
T Consensus        44 fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DE  123 (217)
T KOG0880|consen   44 FDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDE  123 (217)
T ss_pred             EEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCc
Confidence            7999999999999999999999999999999998 89999999999999999999999999865   5799999999999


Q ss_pred             c------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC--CCcc
Q psy10327         77 V------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT--SSKP  130 (289)
Q Consensus        77 ~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~--~~~~  130 (289)
                      +      .+|.++||+   .+||| |||++...|||||+|+|||||++ ||+|.+|+..+.  ..+|
T Consensus       124 Nf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP  190 (217)
T KOG0880|consen  124 NFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKP  190 (217)
T ss_pred             cceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCc
Confidence            8      379999996   78999 55557789999999999999998 999999987655  3444

>KOG0879|consensus

Probab=100.00  E-value=3.7e-38  Score=246.71  Aligned_cols=125  Identities=57%  Similarity=0.987  Sum_probs=119.2

Q ss_pred             CCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccC-----CccccCCceEEEecCcEEEeCCCCCCCCC
Q psy10327        165 KTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-----GFGYQGSSFHRIIPDFMCQGGDFTNHNGT  239 (289)
Q Consensus       165 ~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~-----g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~  239 (289)
                      ++..+|.|||||++++.+.|+|+||||.|.+|+|++||++.|+|+-     ..+|+++.|||||++|||||||+..++|+
T Consensus         6 r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt   85 (177)
T KOG0879|consen    6 RSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT   85 (177)
T ss_pred             cCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCc
Confidence            4456999999999999999999999999999999999999999863     24699999999999999999999999999


Q ss_pred             CCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |-.++|+..|+||++.++|+.+|+|||||+|+++||+|||||..++.|||
T Consensus        86 G~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD  135 (177)
T KOG0879|consen   86 GVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLD  135 (177)
T ss_pred             eEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEeccccccc
Confidence            99999999999999999999999999999999999999999999999998

>KOG0881|consensus

Probab=100.00  E-value=8.8e-38  Score=241.91  Aligned_cols=118  Identities=54%  Similarity=0.932  Sum_probs=110.0

Q ss_pred             CCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCc
Q psy10327        163 DPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK  242 (289)
Q Consensus       163 ~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~  242 (289)
                      +|..-.-+.|+++     |++|.|++|||-+.||+||.||..|+  +.|| |+|+.||||+++||||||||+ ++|.||.
T Consensus         3 ~~~~~q~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPT-GTGRGGa   73 (164)
T KOG0881|consen    3 APPEWQPPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPT-GTGRGGA   73 (164)
T ss_pred             CCccCCCCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCC-CCCCCcc
Confidence            3444556678888     99999999999999999999999999  8999 999999999999999999997 6899999


Q ss_pred             ccCCCCCCCCcC-CCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        243 SIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       243 ~~~~~~~~~e~~-~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |+||.+|+||.. .++|...|.|||||.|||+|+|||||||.+.+|||
T Consensus        74 SIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LD  121 (164)
T KOG0881|consen   74 SIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLD  121 (164)
T ss_pred             ccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccC
Confidence            999999999954 79999999999999999999999999999999998

>KOG0882|consensus

Probab=100.00  E-value=1e-36  Score=279.79  Aligned_cols=116  Identities=46%  Similarity=0.721  Sum_probs=107.5

Q ss_pred             CeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCC
Q psy10327        170 PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKF  249 (289)
Q Consensus       170 ~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~  249 (289)
                      +++.=+-+|..|+.|+|.|.||++.||+||+||...|  +.|| |||..|||||++||||+|||. ++|+||.|+||..|
T Consensus       400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~df  475 (558)
T KOG0882|consen  400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDF  475 (558)
T ss_pred             ceecccceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCC-CCCCCCcccccccc
Confidence            3344444555699999999999999999999999999  8999 999999999999999999997 79999999999999


Q ss_pred             CCCcC-CCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        250 EDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       250 ~~e~~-~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +||.. .|+|+++-+|||||.|||+||||||||+.++||||
T Consensus       476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld  516 (558)
T KOG0882|consen  476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLD  516 (558)
T ss_pred             hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccC
Confidence            99965 79999999999999999999999999999999998

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.9e-36  Score=246.32  Aligned_cols=105  Identities=49%  Similarity=0.798  Sum_probs=97.9

Q ss_pred             CcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcCCCCC
Q psy10327        179 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH  258 (289)
Q Consensus       179 ~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~~~~~  258 (289)
                      ..|+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+||||||||..+.+.++.+   .+|++|++...|
T Consensus         4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~~   77 (158)
T COG0652           4 LETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALNG   77 (158)
T ss_pred             eeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccccccccc
Confidence            3499999999999999999999999999  7999 999999999999999999998776777774   689999888878


Q ss_pred             CC--CcEEEEecCC-CCCCCceEEEEcCCCCCCC
Q psy10327        259 TG--PGVLSMANSG-PNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       259 ~~--~G~v~ma~~~-~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++  +|+|||||++ ||||+||||||+.++||||
T Consensus        78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld  111 (158)
T COG0652          78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLD  111 (158)
T ss_pred             ccCCcceEeEcccCCcCCccCeEEEEecCCcccC
Confidence            77  9999999999 9999999999999999998

>KOG0879|consensus

Probab=100.00  E-value=6.2e-36  Score=234.21  Aligned_cols=126  Identities=32%  Similarity=0.466  Sum_probs=113.6

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCC-----cccCCCeeeeecccceeccccccccCC---cccCCCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFVSFMTKHQSLKS---RFSNLGG   72 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g-----~~Y~g~~f~rv~~~~~iq~Gd~~~~~g---~~~~~~~   72 (289)
                      |||+|++.+.|||.||||.|.+|+|+|||+++|||+..     .+|+++.|||||++|||||||+..++|   .|||+..
T Consensus        15 ~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~   94 (177)
T KOG0879|consen   15 FDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGST   94 (177)
T ss_pred             EEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCC
Confidence            79999999999999999999999999999999999753     469999999999999999999887654   7899999


Q ss_pred             Ccccc------chhhhhcccC---CCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         73 LAEEV------DDKVLNAAFI---PFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        73 ~~~e~------~~g~~~~~~~---~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      |+||+      .+|+++||+.   +||- |||+..+.+||||||+|||||++ |.++++|+..+.
T Consensus        95 F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~  159 (177)
T KOG0879|consen   95 FPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPT  159 (177)
T ss_pred             CCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCC
Confidence            99998      3799999964   6776 66667789999999999999998 999999998665

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=2e-34  Score=241.83  Aligned_cols=119  Identities=71%  Similarity=1.184  Sum_probs=112.4

Q ss_pred             CeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCC------ccccCCceEEEecCcEEEeCCCCCCCCCCCcc
Q psy10327        170 PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG------FGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS  243 (289)
Q Consensus       170 ~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g------~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~  243 (289)
                      |+|||||++++++.|+|+||||.+.||++|+||++||++.++      + |+++.||||+|+|+||+||+..++++++.+
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~-Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~   79 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFG-YKGSTFHRVIPDFMIQGGDFTRGNGTGGKS   79 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccc-cCCCEEEEEeCCcEEEcCCccCCCCCCCCc
Confidence            679999999999999999999999999999999999976566      6 999999999999999999987777888889


Q ss_pred             cCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        244 IYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       244 ~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +++..+++|...++|+++|+||||+.++++++|||||+++++|+||
T Consensus        80 ~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld  125 (164)
T cd01926          80 IYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLD  125 (164)
T ss_pred             ccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccC
Confidence            9999999998899999999999999999999999999999999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-35  Score=243.38  Aligned_cols=119  Identities=26%  Similarity=0.353  Sum_probs=103.0

Q ss_pred             eCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc-------
Q psy10327          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV-------   77 (289)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~-------   77 (289)
                      +..|..|+|+||||++.||+||+||+.||  +.|| |+|+.||||||+|||||||+.++.+..-.+..|++|+       
T Consensus         3 ~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~~~f~~E~~~~~~~~   79 (158)
T COG0652           3 ILETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPGPPFKDENFALNGDR   79 (158)
T ss_pred             eeeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCCCCCCccccccccccc
Confidence            45789999999999999999999999999  8999 9999999999999999999987744333347788883       


Q ss_pred             -chhhhhccc----CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -DDKVLNAAF----IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -~~g~~~~~~----~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                       .+|+++||.    .++|| |||++.+.||||++|+|||+|++ ||+|++|+....
T Consensus        80 ~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~  135 (158)
T COG0652          80 HKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDT  135 (158)
T ss_pred             CCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCc
Confidence             379999994    35777 66667899999999999999998 999999988543

>KOG0881|consensus

Probab=100.00  E-value=5.5e-36  Score=231.93  Aligned_cols=117  Identities=27%  Similarity=0.457  Sum_probs=106.0

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC--CcccCCCCCccccc------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK--SRFSNLGGLAEEVD------   78 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~--g~~~~~~~~~~e~~------   78 (289)
                      .|++|.|++|||-+.||+||+||.+|+  ++|| |+|..|||||++|||||||+++++  |.||||.+|+||..      
T Consensus        15 eTsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dLkhT   91 (164)
T KOG0881|consen   15 ETSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDLKHT   91 (164)
T ss_pred             eecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhhccc
Confidence            589999999999999999999999999  9999 999999999999999999999875  89999999999974      


Q ss_pred             -hhhhhcc---cCCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 -DKVLNAA---FIPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 -~g~~~~~---~~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                       .|+++||   ..+||| |||++.|.+||||||++||||.. |+|+++|-..+.
T Consensus        92 GAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~T  145 (164)
T KOG0881|consen   92 GAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVET  145 (164)
T ss_pred             chhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceec
Confidence             5788888   457898 56667799999999999999997 999999966444

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=7.4e-34  Score=242.05  Aligned_cols=125  Identities=62%  Similarity=1.071  Sum_probs=115.9

Q ss_pred             CCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhc-------cCCccccCCceEEEecCcEEEeCCCCCC
Q psy10327        164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTH-------EKGFGYQGSSFHRIIPDFMCQGGDFTNH  236 (289)
Q Consensus       164 ~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g-------~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~  236 (289)
                      |.+..+++||||+++.+++.|+|+||||.+.||++|+||++||+|       +.++ |+++.||||+|+|+||+||+..+
T Consensus        10 ~~~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~   88 (183)
T PTZ00060         10 PEMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNH   88 (183)
T ss_pred             cccCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCC
Confidence            445568899999999999999999999999999999999999974       3567 99999999999999999998877


Q ss_pred             CCCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        237 NGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       237 ~g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +++++.++|+..+++|...++|+++|+|||++.++++++||||||++++|+||
T Consensus        89 ~g~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ld  141 (183)
T PTZ00060         89 NGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLD  141 (183)
T ss_pred             CCCCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccC
Confidence            78888999999999998899999999999999999999999999999999998

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=9.8e-34  Score=241.66  Aligned_cols=127  Identities=61%  Similarity=1.040  Sum_probs=116.3

Q ss_pred             CCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccC---C--ccccCCceEEEecCcEEEeCCCCCCC
Q psy10327        163 DPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK---G--FGYQGSSFHRIIPDFMCQGGDFTNHN  237 (289)
Q Consensus       163 ~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~---g--~~Y~g~~f~Rv~~~f~iq~Gd~~~~~  237 (289)
                      .|....+++|||||++++++.|+|+||||.+.||+||+||++||+++.   |  .+|+++.||||+|+|+|||||+..++
T Consensus        12 ~~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~   91 (186)
T PLN03149         12 RPPNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGD   91 (186)
T ss_pred             cCCCCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCC
Confidence            455566889999999999999999999999999999999999997542   2  24999999999999999999987778


Q ss_pred             CCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        238 GTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       238 g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++++.++|+..|++|.+.++|+++|+||||++++++++||||||+.++||||
T Consensus        92 g~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ld  143 (186)
T PLN03149         92 GTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLD  143 (186)
T ss_pred             CCCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccC
Confidence            8889999999999998889999999999999999999999999999999998

>KOG0111|consensus

Probab=100.00  E-value=5.5e-35  Score=246.54  Aligned_cols=124  Identities=40%  Similarity=0.602  Sum_probs=114.7

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc---CCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL---KSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~---~g~~~~~~~~~~e~   77 (289)
                      +||.|+....|||+++|..|.+|+|++||++||||++||+|+|++||||||.||+||||++..   +|+||||.+|.||+
T Consensus       141 ~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdden  220 (298)
T KOG0111|consen  141 HDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDEN  220 (298)
T ss_pred             hheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999854   58999999999998


Q ss_pred             c------hhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccc
Q psy10327         78 D------DKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQ  124 (289)
Q Consensus        78 ~------~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~  124 (289)
                      .      +|+++|++   .+||| |||++...+||||+|+|||.|++ |+||++++++
T Consensus       221 f~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~q  278 (298)
T KOG0111|consen  221 FTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQ  278 (298)
T ss_pred             eeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhc
Confidence            3      79999995   47898 56667789999999999999998 9999999874

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=1.1e-32  Score=242.90  Aligned_cols=120  Identities=30%  Similarity=0.447  Sum_probs=108.9

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCc--------cccCCceEEEecC-cEEEeCCCCCC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPD-FMCQGGDFTNH  236 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~--------~Y~g~~f~Rv~~~-f~iq~Gd~~~~  236 (289)
                      ...+++||||+++++.+.|+|+||||.+.||+||+||++||+|..++        +|+++.||||+++ |+||+||+.. 
T Consensus        49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-  127 (249)
T PTZ00221         49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-  127 (249)
T ss_pred             CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence            36688999999999999999999999999999999999999876532        3999999999986 8999999853 


Q ss_pred             CCCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        237 NGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       237 ~g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                         .+.+++|..|++|++.++|+++|+||||+.+||+++|||||||.++||||
T Consensus       128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LD  177 (249)
T PTZ00221        128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLD  177 (249)
T ss_pred             ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccC
Confidence               24567888999999999999999999999999999999999999999998

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=99.98  E-value=3.1e-32  Score=224.68  Aligned_cols=106  Identities=51%  Similarity=0.806  Sum_probs=99.4

Q ss_pred             cEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcC-CCCC
Q psy10327        180 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKH  258 (289)
Q Consensus       180 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~-~~~~  258 (289)
                      .|+.|+|+||||.+.||++|+||++||  +.+| |+++.||||+|+|+||+||+. +++.++.++|+..+++|.. .++|
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h   78 (148)
T cd01927           3 HTTKGDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKH   78 (148)
T ss_pred             EeccccEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCc
Confidence            489999999999999999999999999  7889 999999999999999999986 5778888899989999875 7889


Q ss_pred             CCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        259 TGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       259 ~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +++|+||||+.++++++|||||+++++|+||
T Consensus        79 ~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ld  109 (148)
T cd01927          79 DRPYTLSMANAGPNTNGSQFFITTVATPWLD  109 (148)
T ss_pred             CCCeEEEEeeCCCCCCCceEEEEcCCCcccC
Confidence            9999999999999999999999999999998

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>KOG0883|consensus

Probab=99.97  E-value=7.8e-33  Score=249.85  Aligned_cols=105  Identities=50%  Similarity=0.855  Sum_probs=102.1

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcC-CCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~-~~~~~  259 (289)
                      |+.|+|-|||+.|.+|++|+||++||  ++|| |+|+.|||.|++||||||||+ ++|.||.|+||.+|.||.. .+.|+
T Consensus       284 Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf~~~l~H~  359 (518)
T KOG0883|consen  284 TNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFCSNLSHD  359 (518)
T ss_pred             ccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccccCCCCCcC
Confidence            99999999999999999999999999  9999 999999999999999999997 7899999999999999965 79999


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .||+|||||+|||+|||||||+..++-|||
T Consensus       360 gRGvlSMANsGpnTNgSQFFItyrsckhLd  389 (518)
T KOG0883|consen  360 GRGVLSMANSGPNTNGSQFFITYRSCKHLD  389 (518)
T ss_pred             CcceEeeccCCCCCCCceEEEEecchhhcc
Confidence            999999999999999999999999999998

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=99.97  E-value=7e-32  Score=222.05  Aligned_cols=106  Identities=56%  Similarity=0.954  Sum_probs=98.8

Q ss_pred             cEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCc-CCCCC
Q psy10327        180 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKH  258 (289)
Q Consensus       180 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~-~~~~~  258 (289)
                      .|+.|+|+||||.+.||++|+||++||  +.|| |+++.||||+|+|+|||||+. +++.++.++++..+++|. ..++|
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h   78 (146)
T cd01922           3 ETTMGEITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKH   78 (146)
T ss_pred             EeccccEEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCC
Confidence            389999999999999999999999999  7899 999999999999999999986 567778888999999884 57899


Q ss_pred             CCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        259 TGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       259 ~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +++|+||||+.++++++|||||+++++|+||
T Consensus        79 ~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld  109 (146)
T cd01922          79 TGAGILSMANAGPNTNGSQFFITLAPTPWLD  109 (146)
T ss_pred             CCCeEEEEeeCCCCCCccEEEEEcCCCcccC
Confidence            9999999999999999999999999999998

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=99.97  E-value=1.3e-31  Score=222.10  Aligned_cols=105  Identities=52%  Similarity=0.835  Sum_probs=98.5

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcC-CCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~-~~~~~  259 (289)
                      |+.|+|+||||++.||++|+||++||  +.+| |+++.||||+|+|+||+||+. ++++++.++|+..+++|.. .++|+
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~~   82 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKHD   82 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCcC
Confidence            99999999999999999999999999  7789 999999999999999999986 5677888889999999875 57898


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+||||++++++++|||||+++++||||
T Consensus        83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld  112 (153)
T cd01928          83 SRGVVSMANNGPNTNGSQFFITYAKQPHLD  112 (153)
T ss_pred             CCcEEEEeeCCCCCcccEEEEEeCCCcccC
Confidence            999999999999999999999999999998

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>KOG0884|consensus

Probab=99.97  E-value=3.1e-32  Score=209.91  Aligned_cols=105  Identities=52%  Similarity=0.835  Sum_probs=101.0

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcC-CCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~-~~~~~  259 (289)
                      |..|+|.||||.+.+|++|+||+.||  ...| |+++.|||-+|+|++|+||++ ..|.||.|+||.+|+||.. -++|+
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh~   82 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKHN   82 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhhc
Confidence            88999999999999999999999999  8888 999999999999999999997 6899999999999999976 58999


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .||+|||||.|||+|+||||||.+.+||||
T Consensus        83 ~rg~vsmanngp~tn~sqffity~kq~hld  112 (161)
T KOG0884|consen   83 VRGVVSMANNGPNTNGSQFFITYGKQPHLD  112 (161)
T ss_pred             cceeEEcccCCCCCCCceEEEEecCCCccc
Confidence            999999999999999999999999999998

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=99.97  E-value=2.5e-31  Score=221.82  Aligned_cols=105  Identities=51%  Similarity=0.856  Sum_probs=98.8

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCc-CCCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~-~~~~~~  259 (289)
                      |+.|+|+||||.+.||++|+||++||  +.|| |+++.||||+|+|+||+||+. +++.++.++++..+++|. ..++|+
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h~   81 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHD   81 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCcC
Confidence            99999999999999999999999999  7899 999999999999999999986 577888899999999885 467899


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+||||++++++++|||||+++++||||
T Consensus        82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld  111 (159)
T cd01923          82 GRGVLSMANSGPNTNGSQFFITYRSCKHLD  111 (159)
T ss_pred             CCcEEEEeeCCCCCcccEEEEECCCCcccC
Confidence            999999999999999999999999999998

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=99.97  E-value=3.5e-31  Score=223.47  Aligned_cols=111  Identities=41%  Similarity=0.748  Sum_probs=102.3

Q ss_pred             CeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCC
Q psy10327        170 PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKF  249 (289)
Q Consensus       170 ~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~  249 (289)
                      .+|.++     |+.|+|+||||.+.||+||+||++||  +.+| |+++.||||+|+|+|||||+. ++++++.++|+..+
T Consensus         6 ~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~   76 (171)
T cd01925           6 GKVILK-----TTAGDIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPF   76 (171)
T ss_pred             cEEEEE-----EccccEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCcEEEccccC-CCCccCcccCCCcc
Confidence            456666     89999999999999999999999999  7889 999999999999999999986 57888889999999


Q ss_pred             CCCcC-CCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        250 EDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       250 ~~e~~-~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|.. .++|+++|+||||++++++++|||||+++++|+||
T Consensus        77 ~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ld  117 (171)
T cd01925          77 KDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELN  117 (171)
T ss_pred             CcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccC
Confidence            98865 57899999999999999999999999999999998

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PTZ00221 cyclophilin; Provisional

Probab=99.97  E-value=1.3e-31  Score=236.06  Aligned_cols=125  Identities=25%  Similarity=0.291  Sum_probs=108.1

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCc--------ccCCCeeeeeccc-ceeccccccccCCcccCCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPD-FVSFMTKHQSLKSRFSNLG   71 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~--------~Y~g~~f~rv~~~-~~iq~Gd~~~~~g~~~~~~   71 (289)
                      |||+|+++..|||+||||.+.||+||+||++||+|+.+.        +|+++.||||+|+ |+||+||+.. .+.++||.
T Consensus        57 ldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-~g~s~~G~  135 (249)
T PTZ00221         57 LDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-FNVSSTGT  135 (249)
T ss_pred             EEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-CCccCCCC
Confidence            699999999999999999999999999999999877642        2999999999986 8999999764 46778888


Q ss_pred             CCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         72 GLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        72 ~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .|++|+      .+|+++|+.   .++|| |||++.++|+||++|+|||||++ ||||++|+..+.
T Consensus       136 ~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~  201 (249)
T PTZ00221        136 PIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPL  201 (249)
T ss_pred             cccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCc
Confidence            898885      368999984   45677 66667789999999999999998 999999986543

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=99.97  E-value=1.9e-31  Score=223.77  Aligned_cols=125  Identities=34%  Similarity=0.533  Sum_probs=107.7

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCC------cccCCCeeeeecccceecccccc---ccCCcccCCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG------FGYQGSSFHRIIPDFVSFMTKHQ---SLKSRFSNLG   71 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g------~~Y~g~~f~rv~~~~~iq~Gd~~---~~~g~~~~~~   71 (289)
                      |||+++++++|+|+||||.+.||+||+||++||++.++      + |+++.||||+|+|+||+||+.   +.++.++|+.
T Consensus         5 ~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~-Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~   83 (164)
T cd01926           5 FDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFG-YKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGE   83 (164)
T ss_pred             EEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccc-cCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCC
Confidence            79999999999999999999999999999999987666      6 999999999999999999965   2346788888


Q ss_pred             CCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         72 GLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        72 ~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .+++|.      ..|+++|+.   .++|| |||++.++|+||++|+|||||++ ||||++|+..+.
T Consensus        84 ~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~  149 (164)
T cd01926          84 KFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGS  149 (164)
T ss_pred             ccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCC
Confidence            888774      368888873   34556 67777799999999999999998 999999987554

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=99.97  E-value=1.9e-31  Score=219.97  Aligned_cols=117  Identities=22%  Similarity=0.347  Sum_probs=101.4

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCccccc------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEVD------   78 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~~------   78 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|++||||+.+.  ++.++|+..+++|..      
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~   79 (148)
T cd01927           3 HTTKGDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHD   79 (148)
T ss_pred             EeccccEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcC
Confidence            578999999999999999999999999  7889 99999999999999999998654  467888888888753      


Q ss_pred             -hhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 -DKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 -~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                       +|+++|+.   .++|| |||++.++|+||++|+|||||++ ||+|++|+....
T Consensus        80 ~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~  133 (148)
T cd01927          80 RPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKT  133 (148)
T ss_pred             CCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCC
Confidence             48888873   34566 67777799999999999999998 999999987544

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>KOG0882|consensus

Probab=99.97  E-value=9.2e-32  Score=247.20  Aligned_cols=120  Identities=23%  Similarity=0.342  Sum_probs=107.0

Q ss_pred             eeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCccccchh-
Q psy10327          4 KIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEVDDK-   80 (289)
Q Consensus         4 ~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~~~g-   80 (289)
                      +|.-|++|+|.|.||+++||+||+||...|  +.|| |+|..|||||++||||+||+.+.  ||+||||+.|+||..+. 
T Consensus       407 aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~l  483 (558)
T KOG0882|consen  407 AIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNL  483 (558)
T ss_pred             eEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCccc
Confidence            456689999999999999999999999999  9999 99999999999999999999865  58999999999998654 


Q ss_pred             ------hhhcc---cCCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         81 ------VLNAA---FIPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        81 ------~~~~~---~~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                            .++||   ..+||| |||++.|.|||||||+|||||++ ||||++|+....
T Consensus       484 rhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t  540 (558)
T KOG0882|consen  484 RHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKT  540 (558)
T ss_pred             ccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhccc
Confidence                  45566   457998 66667899999999999999998 999999987554

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=99.97  E-value=2.3e-30  Score=221.58  Aligned_cols=114  Identities=28%  Similarity=0.503  Sum_probs=97.0

Q ss_pred             CCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCccc
Q psy10327        165 KTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSI  244 (289)
Q Consensus       165 ~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~  244 (289)
                      +++..++|.++     |+.|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|+||||++....+   ...
T Consensus        24 ~~~~~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~   92 (190)
T PRK10903         24 AAKGDPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKK   92 (190)
T ss_pred             ccCCCcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCC---CCC
Confidence            44566677666     89999999999999999999999999  8899 9999999999999999999764321   123


Q ss_pred             CCCCCCCCcCCCCCCCCcEEEEecCC-CCCCCceEEEEcCCCCCCC
Q psy10327        245 YGNKFEDENFILKHTGPGVLSMANSG-PNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       245 ~~~~~~~e~~~~~~~~~G~v~ma~~~-~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++.++.+|.....|+++|+|||||.+ +|+++|||||+++++|+||
T Consensus        93 ~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld  138 (190)
T PRK10903         93 PNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLD  138 (190)
T ss_pred             CCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCccccc
Confidence            45677888665567789999999976 9999999999999999997

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=99.97  E-value=4.4e-31  Score=217.29  Aligned_cols=117  Identities=26%  Similarity=0.435  Sum_probs=101.0

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV-------   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~-------   77 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|++||||+.+.  ++.++|+..|++|.       
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~   79 (146)
T cd01922           3 ETTMGEITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHT   79 (146)
T ss_pred             EeccccEEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCC
Confidence            489999999999999999999999999  7889 99999999999999999998644  36788888888774       


Q ss_pred             chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .+|+++|+.   .+++| |||++.++|+||++|+|||||++ ||||++|+....
T Consensus        80 ~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~  133 (146)
T cd01922          80 GAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQT  133 (146)
T ss_pred             CCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCC
Confidence            258888873   34565 67777899999999999999998 999999987544

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>PTZ00060 cyclophilin; Provisional

Probab=99.97  E-value=6.2e-31  Score=224.08  Aligned_cols=124  Identities=30%  Similarity=0.481  Sum_probs=106.4

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhcc-------CCCcccCCCeeeeecccceeccccccc---cCCcccCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTH-------EKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNL   70 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g-------~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~   70 (289)
                      ||+++++++.|+|+||||.+.||+||+||++||+|       +.++ |+++.||||+|+++||+||+..   .++.++|+
T Consensus        20 ~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g   98 (183)
T PTZ00060         20 FDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGGESIYG   98 (183)
T ss_pred             EEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCCCcccc
Confidence            69999999999999999999999999999999975       3457 9999999999999999999753   35678888


Q ss_pred             CCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         71 GGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        71 ~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                      ..+++|.      .+|+++|+.   .+++| |||++.+.|+||++|+|||||++ ||||++|+...
T Consensus        99 ~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~  164 (183)
T PTZ00060         99 RKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEG  164 (183)
T ss_pred             cccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccC
Confidence            8887774      258899973   34555 67777899999999999999998 99999998643

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=99.97  E-value=5.3e-31  Score=224.87  Aligned_cols=126  Identities=31%  Similarity=0.449  Sum_probs=106.5

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCC---C--cccCCCeeeeecccceecccccc---ccCCcccCCCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK---G--FGYQGSSFHRIIPDFVSFMTKHQ---SLKSRFSNLGG   72 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~---g--~~Y~g~~f~rv~~~~~iq~Gd~~---~~~g~~~~~~~   72 (289)
                      |||+++++..|||+||||.+.||+||+||++||+|+.   |  .+|+++.||||+|+|+|||||+.   +.++.++|+..
T Consensus        23 ~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~  102 (186)
T PLN03149         23 FDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSK  102 (186)
T ss_pred             EEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCc
Confidence            6899999999999999999999999999999997653   2  24999999999999999999974   23467888888


Q ss_pred             Ccccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEE-E-eccccCcccccC
Q psy10327         73 LAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRII-R-VNLAKPQKVQQT  126 (289)
Q Consensus        73 ~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi-~-mdvv~~i~~~~~  126 (289)
                      |++|.      .+|+++|+.   .+++| |||++.+.|+||++|+|||||+ + ||||++|+....
T Consensus       103 f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~  168 (186)
T PLN03149        103 FEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVAT  168 (186)
T ss_pred             cCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCC
Confidence            88774      368999984   34566 6666779999999999999999 6 999999986444

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=99.97  E-value=1.2e-30  Score=216.43  Aligned_cols=117  Identities=23%  Similarity=0.319  Sum_probs=100.7

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV-------   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~-------   77 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|++|+||+...  ++.++|+..+++|.       
T Consensus         6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~~   82 (153)
T cd01928           6 HTNLGDIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKHD   82 (153)
T ss_pred             EEccccEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCcC
Confidence            489999999999999999999999999  7789 99999999999999999998754  35778888888775       


Q ss_pred             chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .+|+++|+.   .++|| |||++.+.|+||++|+|||||++ ||+|++|+..+.
T Consensus        83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~  136 (153)
T cd01928          83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPV  136 (153)
T ss_pred             CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCC
Confidence            258888873   34566 66667789999999999999998 999999987544

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=99.97  E-value=4.3e-30  Score=215.94  Aligned_cols=106  Identities=38%  Similarity=0.596  Sum_probs=93.8

Q ss_pred             cEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCC-------CCCCCC
Q psy10327        180 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG-------NKFEDE  252 (289)
Q Consensus       180 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~-------~~~~~e  252 (289)
                      +|+.|+|+||||.+.||+||+||++||  +.+| |+++.||||+|+|+|||||+. .++.++.++++       ..+++|
T Consensus         3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e   78 (166)
T cd01921           3 ETTLGDLVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPE   78 (166)
T ss_pred             EeccCCEEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCcc
Confidence            489999999999999999999999999  7889 999999999999999999986 56667766664       245666


Q ss_pred             c-CCCCCCCCcEEEEecCCCCCCCceEEEEcCC-CCCCC
Q psy10327        253 N-FILKHTGPGVLSMANSGPNTNGSQFFLCTTK-TEWNI  289 (289)
Q Consensus       253 ~-~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~-~~~LD  289 (289)
                      . ..++|+++|+||||+.++++++||||||+++ +||||
T Consensus        79 ~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ld  117 (166)
T cd01921          79 ILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLD  117 (166)
T ss_pred             cCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccC
Confidence            5 4689999999999999999999999999976 79997

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=99.96  E-value=2.2e-30  Score=216.19  Aligned_cols=117  Identities=24%  Similarity=0.363  Sum_probs=101.3

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV-------   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~-------   77 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|++|+||+..+  ++.++|+..+++|.       
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~   81 (159)
T cd01923           5 HTNKGDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSHD   81 (159)
T ss_pred             EEccccEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCcC
Confidence            489999999999999999999999999  7899 99999999999999999998754  46788888888774       


Q ss_pred             chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .+|+++|+.   .++|| |||++.++|+||++|+|||||++ ||+|++|+..+.
T Consensus        82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~  135 (159)
T cd01923          82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPD  135 (159)
T ss_pred             CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCC
Confidence            257888873   34555 67777899999999999999998 999999987543

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=99.96  E-value=7.7e-30  Score=212.02  Aligned_cols=103  Identities=31%  Similarity=0.463  Sum_probs=90.3

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcCCCCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTG  260 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~~~~~~~  260 (289)
                      |+.|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|+|||||+....+.   ..++.++.+|.....|++
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~   77 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT   77 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence            89999999999999999999999999  7899 99999999999999999998643322   234556777766666788


Q ss_pred             CcEEEEecCC-CCCCCceEEEEcCCCCCCC
Q psy10327        261 PGVLSMANSG-PNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       261 ~G~v~ma~~~-~~s~~sqFfI~l~~~~~LD  289 (289)
                      +|+||||+++ |++++|||||+++++|+||
T Consensus        78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld  107 (155)
T cd01920          78 RGTIAMARTNAPDSATSQFFINLKDNASLD  107 (155)
T ss_pred             ceEEEECCCCCCCCccceEEEECCCchhcC
Confidence            9999999976 9999999999999999997

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0885|consensus

Probab=99.96  E-value=2.4e-30  Score=232.80  Aligned_cols=112  Identities=41%  Similarity=0.720  Sum_probs=104.8

Q ss_pred             CCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCC
Q psy10327        169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNK  248 (289)
Q Consensus       169 ~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~  248 (289)
                      +.+|.+.     |+.|+|-||||+..||++|.||++||  -.|| |+|+.|||++|+|++|||||+ ++|+||.+|||.+
T Consensus        12 tgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f~~Qggdp~-~~gtGgesiyg~~   82 (439)
T KOG0885|consen   12 TGKVILK-----TTKGDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGFLVQGGDPT-GTGTGGESIYGRP   82 (439)
T ss_pred             cceEEEE-----eccCceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccchhcccCCCC-CCCCCcccccccc
Confidence            3456665     88999999999999999999999999  8899 999999999999999999997 7899999999999


Q ss_pred             CCCCcC-CCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        249 FEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       249 ~~~e~~-~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |.+|.. +++++++|+|+|||.+.+.||||||+||+++||||
T Consensus        83 fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~  124 (439)
T KOG0885|consen   83 FADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELN  124 (439)
T ss_pred             chhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhc
Confidence            999964 79999999999999999999999999999999986

>KOG0865|consensus

Probab=99.96  E-value=3e-30  Score=214.15  Aligned_cols=122  Identities=74%  Similarity=1.287  Sum_probs=117.7

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEE---EecCcEEEeCCCCCCCCCCCccc
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHR---IIPDFMCQGGDFTNHNGTGGKSI  244 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~R---v~~~f~iq~Gd~~~~~g~~~~~~  244 (289)
                      .+++||+|+++.++++|+++++||.|..|+|++||..||+|+++++|++..|||   .+++|++||||.+..+++++.++
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi   81 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI   81 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence            578999999999999999999999999999999999999999999999999999   33479999999999999999999


Q ss_pred             CCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        245 YGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       245 ~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |+++|+||++.++|..+|.|||||.+||+|+|||||++....|||
T Consensus        82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLd  126 (167)
T KOG0865|consen   82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLD  126 (167)
T ss_pred             cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEcccccccc
Confidence            999999999999999999999999999999999999999999998

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=99.96  E-value=1.5e-29  Score=211.82  Aligned_cols=103  Identities=30%  Similarity=0.498  Sum_probs=87.9

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcCCCCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTG  260 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~~~~~~~  260 (289)
                      |+.|+|+|+||.+.||+||+||++||  +.+| |+++.||||+|+|+||||++..+.+.   ..++..+++|.....++.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~~~~   79 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGLKNT   79 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccccCC
Confidence            99999999999999999999999999  7899 99999999999999999997533222   223556777754444457


Q ss_pred             CcEEEEecCC-CCCCCceEEEEcCCCCCCC
Q psy10327        261 PGVLSMANSG-PNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       261 ~G~v~ma~~~-~~s~~sqFfI~l~~~~~LD  289 (289)
                      +|+||||+.+ |++++|||||+++++++||
T Consensus        80 ~G~lsma~~~~p~s~~SQFfI~~~~~~~ld  109 (164)
T PRK10791         80 RGTLAMARTQAPHSATAQFFINVVDNDFLN  109 (164)
T ss_pred             CcEEEECCCCCcCCccceEEEEecCchhhc
Confidence            9999999986 9999999999999999886

>KOG0883|consensus

Probab=99.96  E-value=1e-30  Score=236.12  Aligned_cols=116  Identities=24%  Similarity=0.356  Sum_probs=105.5

Q ss_pred             eeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC--CcccCCCCCccccc-------
Q psy10327          8 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK--SRFSNLGGLAEEVD-------   78 (289)
Q Consensus         8 t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~--g~~~~~~~~~~e~~-------   78 (289)
                      |..|++-|||++|.+|++|+||+.||  +.|| |+|+.|||.|.+|||||||++++|  |+||||..|.||..       
T Consensus       284 Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~g  360 (518)
T KOG0883|consen  284 TNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCSNLSHDG  360 (518)
T ss_pred             ccCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccCCCCCcCC
Confidence            78899999999999999999999999  9999 999999999999999999999874  89999999999973       


Q ss_pred             hhhhhccc---CCCCCe-EEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 DKVLNAAF---IPFGDL-VDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 ~g~~~~~~---~~~Gs~-fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      +|+++||+   .+|||| ||+..++-+||++|++||||++ +|+|.+|+..+.
T Consensus       361 RGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~  413 (518)
T KOG0883|consen  361 RGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVET  413 (518)
T ss_pred             cceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCC
Confidence            68888985   579995 5556689999999999999998 999999987655

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=99.96  E-value=1.6e-29  Score=212.40  Aligned_cols=117  Identities=20%  Similarity=0.262  Sum_probs=95.6

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC--CcccCC-------CCCcccc
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK--SRFSNL-------GGLAEEV   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~--g~~~~~-------~~~~~e~   77 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.+| |+++.||||+|+|+|||||+...+  +.++|+       ..+++|.
T Consensus         3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~   79 (166)
T cd01921           3 ETTLGDLVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEI   79 (166)
T ss_pred             EeccCCEEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCccc
Confidence            489999999999999999999999999  7889 999999999999999999987543  455543       2344443


Q ss_pred             -------chhhhhccc---CCCCCeEEe-cCC-CCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -------DDKVLNAAF---IPFGDLVDI-QMP-LDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -------~~g~~~~~~---~~~Gs~fii-~~~-~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                             .+|+++|+.   .++||+|+| +.+ +|+||++|+|||||++ ||||++|+..+.
T Consensus        80 ~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~  141 (166)
T cd01921          80 LPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIV  141 (166)
T ss_pred             CCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCC
Confidence                   368888983   346775544 544 7999999999999998 999999987544

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.96  E-value=7.5e-29  Score=209.85  Aligned_cols=107  Identities=36%  Similarity=0.529  Sum_probs=90.2

Q ss_pred             cEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCC--------------------C
Q psy10327        180 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNG--------------------T  239 (289)
Q Consensus       180 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g--------------------~  239 (289)
                      .|+.|+|+||||++.||+||+||++||  +.+| |+++.||||+|+|||||||+...+.                    .
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~   79 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG   79 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence            488999999999999999999999999  8899 9999999999999999999864310                    1


Q ss_pred             CCcccCCCCC-----CCCcCCCCCCCCcEEEEecCC--CCCCCceEEEEcC-------CCCCCC
Q psy10327        240 GGKSIYGNKF-----EDENFILKHTGPGVLSMANSG--PNTNGSQFFLCTT-------KTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~-----~~e~~~~~~~~~G~v~ma~~~--~~s~~sqFfI~l~-------~~~~LD  289 (289)
                      .+.++++..+     .++...+.|+++|+|||||++  ||+++|||||+++       ++||||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ld  143 (176)
T cd01924          80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLD  143 (176)
T ss_pred             CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccC
Confidence            1234555443     245567788899999999988  7999999999998       789997

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=99.96  E-value=2.8e-29  Score=208.64  Aligned_cols=117  Identities=21%  Similarity=0.252  Sum_probs=98.0

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc------chh
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV------DDK   80 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~------~~g   80 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+||+||||+....+...++..+++|.      .+|
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~~~~~~~~~e~~~~~~~~~G   79 (155)
T cd01920           3 QTSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQKETLKPIKNEAGNGLSNTRG   79 (155)
T ss_pred             EecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCccccCCcccCcccccccCCce
Confidence            378999999999999999999999999  8899 9999999999999999999876554444455555553      468


Q ss_pred             hhhccc----CCCCC-eEEecCCCCCCCC-----CCCccceEEE-eccccCcccccC
Q psy10327         81 VLNAAF----IPFGD-LVDIQMPLDYETE-----KHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        81 ~~~~~~----~~~Gs-~fii~~~~p~ldg-----~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      +++|+.    .++|| |||++.+.|+||+     +|+|||||++ ||||++|+..+.
T Consensus        80 ~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~  136 (155)
T cd01920          80 TIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVET  136 (155)
T ss_pred             EEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCc
Confidence            999984    34566 6666778999995     7999999998 999999987555

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0884|consensus

Probab=99.95  E-value=3.3e-29  Score=193.13  Aligned_cols=116  Identities=22%  Similarity=0.286  Sum_probs=102.1

Q ss_pred             eeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCccccc-------
Q psy10327          8 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEVD-------   78 (289)
Q Consensus         8 t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~~-------   78 (289)
                      |..|+|.||||.+.+|+||+||+.||  ...| |++++|||-+|+|++|+||++.+  ||.||||.+|+||..       
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh~~   83 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKHNV   83 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhhcc
Confidence            67899999999999999999999999  7788 99999999999999999998765  589999999999973       


Q ss_pred             hhhhhccc---CCCCCe-EEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 DKVLNAAF---IPFGDL-VDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 ~g~~~~~~---~~~Gs~-fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      +|+++||+   .+|||+ ||+-..+||||.||+|||+||. ++.++.|+.-+.
T Consensus        84 rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v  136 (161)
T KOG0884|consen   84 RGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPV  136 (161)
T ss_pred             ceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhccc
Confidence            67888884   468885 5556689999999999999997 999888876544

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=99.95  E-value=8.9e-29  Score=211.73  Aligned_cols=117  Identities=18%  Similarity=0.281  Sum_probs=97.8

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc------chh
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV------DDK   80 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~------~~g   80 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|++|||++....+...++..+++|.      .+|
T Consensus        34 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~~~~~~~~~~~e~~~~l~~~~G  110 (190)
T PRK10903         34 TTSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRG  110 (190)
T ss_pred             EeccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCCCCCCCCcccCcccccCcCCCc
Confidence            489999999999999999999999999  8899 9999999999999999999765544344455566653      368


Q ss_pred             hhhccc----CCCCC-eEEecCCCCCCCC-----CCCccceEEE-eccccCcccccC
Q psy10327         81 VLNAAF----IPFGD-LVDIQMPLDYETE-----KHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        81 ~~~~~~----~~~Gs-~fii~~~~p~ldg-----~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      +++|+.    .++|| |||++.+.|+||+     +|+|||||++ ||||++|+....
T Consensus       111 ~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~  167 (190)
T PRK10903        111 TIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  167 (190)
T ss_pred             EEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCC
Confidence            999984    34667 6666778999984     9999999998 999999987544

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=99.95  E-value=1.1e-28  Score=206.70  Aligned_cols=117  Identities=21%  Similarity=0.267  Sum_probs=94.5

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc------chh
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV------DDK   80 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~------~~g   80 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|+|||||...+.+...++..+++|.      .+|
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~~~~~~~~~~e~~~~~~~~~G   81 (164)
T PRK10791          5 HTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRG   81 (164)
T ss_pred             EEccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCcEEEeCCcCCCCCcCCCCCCcCCcccccccCCCc
Confidence            589999999999999999999999999  8899 9999999999999999998754433333444555553      368


Q ss_pred             hhhccc----CCCCC-eEEecCCCCCCC-------C-CCCccceEEE-eccccCcccccC
Q psy10327         81 VLNAAF----IPFGD-LVDIQMPLDYET-------E-KHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        81 ~~~~~~----~~~Gs-~fii~~~~p~ld-------g-~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      +++|+.    .++|| |||++.+.++||       + +|+|||||++ ||||++|+....
T Consensus        82 ~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~  141 (164)
T PRK10791         82 TLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVAT  141 (164)
T ss_pred             EEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcC
Confidence            999984    34677 556566777776       3 7999999998 999999987443

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.95  E-value=1.4e-28  Score=208.16  Aligned_cols=115  Identities=25%  Similarity=0.271  Sum_probs=94.5

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC----------------------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK----------------------   64 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~----------------------   64 (289)
                      .|+.|+|+||||.+.||+||+||+.||  +.+| |+++.||||+|+||+||||+...+                      
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~   79 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG   79 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence            578999999999999999999999999  8999 999999999999999999986442                      


Q ss_pred             -CcccCCCCCc-----cc------cchhhhhccc-----CCCCC-eEEecC-------CCCCCCCCCCccceEEE-eccc
Q psy10327         65 -SRFSNLGGLA-----EE------VDDKVLNAAF-----IPFGD-LVDIQM-------PLDYETEKHQLFGRIIR-VNLA  118 (289)
Q Consensus        65 -g~~~~~~~~~-----~e------~~~g~~~~~~-----~~~Gs-~fii~~-------~~p~ldg~~~vFG~Vi~-mdvv  118 (289)
                       +.++|+..+.     ++      ..+|+++|+.     .++|| |||++.       +.|+||++|+|||||++ ||||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl  159 (176)
T cd01924          80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL  159 (176)
T ss_pred             CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence             2345544332     22      1469999983     34566 566666       78999999999999998 9999


Q ss_pred             cCcccc
Q psy10327        119 KPQKVQ  124 (289)
Q Consensus       119 ~~i~~~  124 (289)
                      ++|+..
T Consensus       160 ~~I~~g  165 (176)
T cd01924         160 RELKVG  165 (176)
T ss_pred             HhhcCC
Confidence            999864

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=99.95  E-value=2.5e-28  Score=206.10  Aligned_cols=117  Identities=23%  Similarity=0.324  Sum_probs=99.5

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV-------   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~-------   77 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.+| |+++.||||+|+|++||||+.+.  ++.++|+..+++|.       
T Consensus        11 ~Ts~G~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~~~~~~   87 (171)
T cd01925          11 KTTAGDIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHSRLRFN   87 (171)
T ss_pred             EEccccEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccccCcCCC
Confidence            589999999999999999999999999  8889 99999999999999999998644  46788888888774       


Q ss_pred             chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE--eccccCcccccC
Q psy10327         78 DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR--VNLAKPQKVQQT  126 (289)
Q Consensus        78 ~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~--mdvv~~i~~~~~  126 (289)
                      .+|+++|+.   .+++| |||++.+.|+||++|+|||||++  |+++++|+..+.
T Consensus        88 ~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~  142 (171)
T cd01925          88 RRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVET  142 (171)
T ss_pred             CCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCc
Confidence            258888883   34566 66667789999999999999995  677888876444

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0865|consensus

Probab=99.95  E-value=2e-28  Score=203.17  Aligned_cols=123  Identities=33%  Similarity=0.543  Sum_probs=111.5

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeee---cccceeccccccc---cCCcccCCCCCc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRI---IPDFVSFMTKHQS---LKSRFSNLGGLA   74 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv---~~~~~iq~Gd~~~---~~g~~~~~~~~~   74 (289)
                      ||+++.++++||++++||.|..|+|++||..||||+++++|+++.|||+   +++||+||||++.   ++|+|||+++|+
T Consensus         8 ~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~   87 (167)
T KOG0865|consen    8 FDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFD   87 (167)
T ss_pred             eeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccC
Confidence            7999999999999999999999999999999999999999999999993   3479999999864   468999999999


Q ss_pred             ccc------chhhhhcc---cCCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccc
Q psy10327         75 EEV------DDKVLNAA---FIPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKV  123 (289)
Q Consensus        75 ~e~------~~g~~~~~---~~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~  123 (289)
                      ||+      .+|+|+|+   +.++|| |||++....||||+|+|||+|.+ |+++++|+.
T Consensus        88 DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~  147 (167)
T KOG0865|consen   88 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMER  147 (167)
T ss_pred             CcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhc
Confidence            998      36999998   457888 56667778999999999999998 999999987

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=99.94  E-value=1.4e-26  Score=190.56  Aligned_cols=104  Identities=57%  Similarity=0.850  Sum_probs=92.5

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcCCCC-CC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILK-HT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~~~~-~~  259 (289)
                      |+.|+|+||||.+.||++|+||++||  +.++ |+++.||||+|+++||+|++......+  +.++..+++|..... |+
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~   78 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH   78 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence            78899999999999999999999999  6778 999999999999999999987543322  455678888877655 89


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+|+|++.++++++|||||+++++|+||
T Consensus        79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld  108 (146)
T cd00317          79 RRGTLSMANAGPNTNGSQFFITTAPTPHLD  108 (146)
T ss_pred             CCcEEEEeeCCCCCcccEEEEECCCCcccC
Confidence            999999999999999999999999999997

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0885|consensus

Probab=99.94  E-value=2.6e-27  Score=213.37  Aligned_cols=112  Identities=23%  Similarity=0.337  Sum_probs=98.9

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc------
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV------   77 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~------   77 (289)
                      -.|..|+|.||||+..||++|.||++||  -.|| |+|+.|||++|+|++||||++++  ||+||||..|.+|.      
T Consensus        17 l~TT~G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~h~Rlrf   93 (439)
T KOG0885|consen   17 LKTTKGDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEFHPRLRF   93 (439)
T ss_pred             EEeccCceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccchhcccCCCCCCCCCccccccccchhhcCcceee
Confidence            3578999999999999999999999999  8999 99999999999999999999865  58999999999997      


Q ss_pred             -chhhhhcccC---CCCC-eEEecCCCCCCCCCCCccceEEE---eccccCc
Q psy10327         78 -DDKVLNAAFI---PFGD-LVDIQMPLDYETEKHQLFGRIIR---VNLAKPQ  121 (289)
Q Consensus        78 -~~g~~~~~~~---~~Gs-~fii~~~~p~ldg~~~vFG~Vi~---mdvv~~i  121 (289)
                       .+|++.|++.   .||| ||+++.+.|||+++|++||+|++   ++++ +|
T Consensus        94 ~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~l-ri  144 (439)
T KOG0885|consen   94 NRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNML-RI  144 (439)
T ss_pred             eccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhh-hh
Confidence             3699999854   4677 66667799999999999999996   4544 44

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=99.93  E-value=1.8e-26  Score=189.87  Aligned_cols=117  Identities=27%  Similarity=0.401  Sum_probs=97.7

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCc-ccCCCCCccccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSR-FSNLGGLAEEVD-------   78 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~-~~~~~~~~~e~~-------   78 (289)
                      .|+.|+|+||||.+.||++|+||++||  +.++ |+++.|||++|++++|+||+...++. +.++..+++|..       
T Consensus         3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~E~~~~~~~~~   79 (146)
T cd00317           3 DTTKGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGGGGSGPGYKFPDENFPLKYHHR   79 (146)
T ss_pred             EeccCcEEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCCeEEECCCCCCCCCCCcCCCccCCccccCcCcCC
Confidence            467899999999999999999999999  7778 99999999999999999998765432 455666777653       


Q ss_pred             hhhhhcccC---CCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 DKVLNAAFI---PFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 ~g~~~~~~~---~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .|+++|+..   .+++ |||++.+.|+||++|+|||||++ |++|++|+..+.
T Consensus        80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~  132 (146)
T cd00317          80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDT  132 (146)
T ss_pred             CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCC
Confidence            477777733   2355 66767789999999999999998 999999988666

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=99.93  E-value=4e-26  Score=189.60  Aligned_cols=121  Identities=30%  Similarity=0.439  Sum_probs=98.7

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCC----cccCCCCCccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKS----RFSNLGGLAEE   76 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g----~~~~~~~~~~e   76 (289)
                      |||+.++  +|+|+||||.+.||++|+||++||  ..++ |+++.|||++|++++|+|++...+.    ....+..+++|
T Consensus         2 ~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E   76 (155)
T PF00160_consen    2 VDIETSG--LGRIVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDE   76 (155)
T ss_dssp             EEEEETT--EEEEEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSS
T ss_pred             EEEEeCC--ccCEEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccceeeeeeccCCCCcccccccCccccccc
Confidence            3566544  999999999999999999999999  6778 9999999999999999999765432    12233456666


Q ss_pred             c-------chhhhhcccC-----CCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         77 V-------DDKVLNAAFI-----PFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        77 ~-------~~g~~~~~~~-----~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .       .+|+++|+..     .+|| |||++.+.|+||++|+|||||++ |++|++|+..+.
T Consensus        77 ~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~  140 (155)
T PF00160_consen   77 FNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPT  140 (155)
T ss_dssp             GBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBB
T ss_pred             cccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCC
Confidence            5       4688888843     3455 77777788999999999999999 999999988655

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=99.92  E-value=3.7e-25  Score=183.77  Aligned_cols=112  Identities=46%  Similarity=0.751  Sum_probs=91.4

Q ss_pred             EEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCC-cccCCCCCCC
Q psy10327        173 YMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGG-KSIYGNKFED  251 (289)
Q Consensus       173 ~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~-~~~~~~~~~~  251 (289)
                      |++|+.++  +|+|+||||.+.||++|+||++||  ..++ |+++.|||++|+++||+|++......+. ....+..+++
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~   75 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLC--TSGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPD   75 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHH--HTTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSS
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhh--cccc-cCCceeecccccceeeeeeccCCCCcccccccCcccccc
Confidence            67777432  999999999999999999999999  6778 9999999999999999999865433111 1223446888


Q ss_pred             CcC-CCCCCCCcEEEEecCC--CCCCCceEEEEcCCCCCCC
Q psy10327        252 ENF-ILKHTGPGVLSMANSG--PNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       252 e~~-~~~~~~~G~v~ma~~~--~~s~~sqFfI~l~~~~~LD  289 (289)
                      |.. ...++++|+|+|++.+  +++++|||||+|+++||||
T Consensus        76 E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld  116 (155)
T PF00160_consen   76 EFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLD  116 (155)
T ss_dssp             SGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGT
T ss_pred             ccccccccccceeeeecccccCCCCCCceEEeeccCCCccc
Confidence            874 3344479999999986  8999999999999999987

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415|consensus

Probab=99.90  E-value=3.6e-24  Score=191.86  Aligned_cols=106  Identities=41%  Similarity=0.612  Sum_probs=96.2

Q ss_pred             cEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCC-------CCCCC
Q psy10327        180 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGN-------KFEDE  252 (289)
Q Consensus       180 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~-------~~~~e  252 (289)
                      +|++|+|+|+||.+.+|.+|.||++||  +..| |+.+.||.|..+|++|+|||+ ++|.||.++|+.       .|+.|
T Consensus         6 eTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE   81 (479)
T KOG0415|consen    6 ETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAE   81 (479)
T ss_pred             EeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhh
Confidence            399999999999999999999999999  8889 999999999999999999998 589999999874       34555


Q ss_pred             c-CCCCCCCCcEEEEecCCCCCCCceEEEEcCCC-CCCC
Q psy10327        253 N-FILKHTGPGVLSMANSGPNTNGSQFFLCTTKT-EWNI  289 (289)
Q Consensus       253 ~-~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~-~~LD  289 (289)
                      . +.++|.+.|+|||++.|.|-+||||||||+++ .+||
T Consensus        82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLD  120 (479)
T KOG0415|consen   82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLD  120 (479)
T ss_pred             hcccccccccceEEeecCCcccccceEEEEccccccccc
Confidence            4 47999999999999999999999999999886 5776

>KOG0415|consensus

Probab=99.87  E-value=5.2e-23  Score=184.48  Aligned_cols=115  Identities=22%  Similarity=0.241  Sum_probs=97.2

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC--CcccCCC-------CCccc
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK--SRFSNLG-------GLAEE   76 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~--g~~~~~~-------~~~~e   76 (289)
                      ..|.+|+|+|.||.+.+|+||.||+.||  +..| |+.|.||.|..+|++|+||++++|  |.|||+-       .|..|
T Consensus         5 ieTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE   81 (479)
T KOG0415|consen    5 IETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE   81 (479)
T ss_pred             EEeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence            4689999999999999999999999999  8889 999999999999999999999874  7888862       24555


Q ss_pred             cc-------hhhhhcccC---CCCCeEEecC--CCCCCCCCCCccceEEE-eccccCccc
Q psy10327         77 VD-------DKVLNAAFI---PFGDLVDIQM--PLDYETEKHQLFGRIIR-VNLAKPQKV  123 (289)
Q Consensus        77 ~~-------~g~~~~~~~---~~Gs~fii~~--~~p~ldg~~~vFG~Vi~-mdvv~~i~~  123 (289)
                      ..       .|+++|+..   .+||||++++  .+..|||+|+|||+|++ ||++.+|+.
T Consensus        82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNe  141 (479)
T KOG0415|consen   82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINE  141 (479)
T ss_pred             hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHH
Confidence            42       477777632   4688666655  48899999999999998 999999864

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=97.61  E-value=0.0019  Score=62.08  Aligned_cols=98  Identities=15%  Similarity=0.194  Sum_probs=59.5

Q ss_pred             eeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc----chhhhhc
Q psy10327          9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV----DDKVLNA   84 (289)
Q Consensus         9 ~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~----~~g~~~~   84 (289)
                      -.=.+.+||..+ +|++++.|+++.  +.|. +   ...+...-|+   +|      .+..+...+.|+    .+|.+..
T Consensus       199 IfTy~evE~~~~-~p~s~EH~la~~--~~G~-~---~Vd~~tsTfi---~d------~~L~g~~~p~En~~~R~rGtVTV  262 (503)
T TIGR03268       199 IFTYVEVELDPN-APVSVEHFLALM--EDGT-F---RVDYRTSTFI---SD------DSLRGLDKPEENIEKRRRGAVTV  262 (503)
T ss_pred             EEEEEEEEEcCC-CChhHHHHHHHH--hCCe-E---EEeeeecceE---ec------ccccCccCCccccCcccceeEEE
Confidence            344678887665 999999999999  7775 1   1111111111   11      111222334443    3677777


Q ss_pred             ccCCCCC--eEEecCCCCCCCCCCCccceEEE-eccccCccc
Q psy10327         85 AFIPFGD--LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKV  123 (289)
Q Consensus        85 ~~~~~Gs--~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~  123 (289)
                      .+.-.|+  .||-..+.+. .-.|+|+|||++ |+.++--+.
T Consensus       263 Rn~G~G~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       263 RNSGVGEGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             EeeccCceeEEEEcCCCCC-CcccceeEEEecceeeeecccC
Confidence            6665555  8888765443 246999999997 988865444

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=97.53  E-value=0.0029  Score=60.93  Aligned_cols=98  Identities=16%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             eeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc----chhhhhc
Q psy10327          9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV----DDKVLNA   84 (289)
Q Consensus         9 ~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~----~~g~~~~   84 (289)
                      -.=.+.+||..+ +|++++.|+++.  +.|. ++   ..+....|+   +|.      +..+...+.|+    .+|.+..
T Consensus       202 IfTy~eve~~~~-~p~s~EH~la~~--~~G~-f~---Vd~~tstfI---~d~------~L~g~~~p~En~~~R~~GtVTV  265 (508)
T PRK00969        202 IFTYVEVELDPG-APKSVEHFLALL--EDGT-FE---VDFETSTFI---ADD------RLQGLKIPEENFEPRRRGTVTV  265 (508)
T ss_pred             EEEEEEEEEcCC-CCchHHHHHHHH--hCCe-EE---EeeeecceE---eec------cccCccCCccccCccccceEEE
Confidence            344677888776 999999999999  7775 11   111111111   111      11222334443    3577776


Q ss_pred             ccCCCCC--eEEecCCCCCCCCCCCccceEEE-eccccCccc
Q psy10327         85 AFIPFGD--LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKV  123 (289)
Q Consensus        85 ~~~~~Gs--~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~  123 (289)
                      .+.-.|+  .||-..+.|. .-.|+|.|+|++ |+.++--+.
T Consensus       266 Rt~G~g~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        266 RTAGVGVGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             EeeccCceeEEEECCCCCC-CccceeEEEEecceeeeecccC
Confidence            6655544  8888765443 246999999997 988865444

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0052  Score=57.33  Aligned_cols=93  Identities=18%  Similarity=0.285  Sum_probs=55.5

Q ss_pred             eeeEEEEEEcCCCChHHHHHHHHhhccCCCc---ccCCCeeeeecccceeccccccccCCcccCCCCCcccc----chhh
Q psy10327          9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGF---GYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV----DDKV   81 (289)
Q Consensus         9 ~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~---~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~----~~g~   81 (289)
                      -.=.+.+||-.+ +|++++.|++|.  +.|.   .|.-++|-          ++.      +....+.+.|+    ..|.
T Consensus       201 ifTy~eve~s~n-sP~saEH~lalm--edG~lri~~~tntfi----------s~~------~lq~~~~~~en~d~RerG~  261 (512)
T COG4070         201 IFTYFEVELSRN-SPKSAEHFLALM--EDGTLRIDVTTNTFI----------SDD------TLQEEKVPEENFDLRERGA  261 (512)
T ss_pred             EEEEEEEEeCCC-CchhHHHHHHHh--hcceEEEEEecccee----------ecc------ccccccCChhhhhhhhcce
Confidence            445678888886 999999999999  7764   12222221          111      11223444444    2455


Q ss_pred             hhcccCCCCC--eEEecCCCCCCCCCCCccceEEE-eccccCc
Q psy10327         82 LNAAFIPFGD--LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQ  121 (289)
Q Consensus        82 ~~~~~~~~Gs--~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i  121 (289)
                      +...+...|+  .+|-.-+.+. .-.|.|.|||++ |+.++--
T Consensus       262 iTvRn~GvgeGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a  303 (512)
T COG4070         262 ITVRNVGVGEGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLA  303 (512)
T ss_pred             EEEEeeecccceEEEEecCCCC-ccccceeeeeecceEEEEec
Confidence            5554444444  6776554333 235889999997 8777543

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.37  E-value=0.0069  Score=58.31  Aligned_cols=101  Identities=22%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             EEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc-ch---hhhhcc--
Q psy10327         12 RITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV-DD---KVLNAA--   85 (289)
Q Consensus        12 ~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~-~~---g~~~~~--   85 (289)
                      -|.|+||++.||+|+.-|+++. |-.-..---..+|-..++.++.=|+...  ...+..+..|... ..   |+-.|+  
T Consensus       376 vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG~L~v~F~~~d~~mFk~~~~~--~k~LiPEN~P~~~V~ag~IgvTN~a~k  452 (503)
T TIGR03268       376 VIEIELYDDNAPRSVWYFRKFT-GLKTKPVGRLPVHFAFKEMIMFKGNKEL--AKGLIPENTPEDKVEAGVIGVTNQACK  452 (503)
T ss_pred             EEEEEEcccCCchHHHHHHHhc-CCcccccceeEEEEEeCCeeEeccCchh--ccccCCCCCCCCccccceEeeechhhh
Confidence            5899999999999999999876 1110001113445455554333222111  1122222222221 12   233333  


Q ss_pred             --------------cCCCCCeEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         86 --------------FIPFGDLVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        86 --------------~~~~Gs~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                                    |.|+|         ..++|.++| |||++ ++.|++++.++
T Consensus       453 ~~G~IGVRl~d~defGPTG---------E~F~gTNIi-G~Vv~~~e~Lk~~KeGd  497 (503)
T TIGR03268       453 HVGMIGVRLEDSDEFGPTG---------EPFSGTNII-GRVVEGMERLKGLKEGD  497 (503)
T ss_pred             cCceEEEEccCCcccCCCC---------CCccCcceE-EEecCChhHhcccccCc
Confidence                          33333         235666655 99997 99999988754

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=95.57  E-value=0.45  Score=46.28  Aligned_cols=216  Identities=16%  Similarity=0.212  Sum_probs=105.9

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCccccchhhhhcc-
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAA-   85 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~~~g~~~~~-   85 (289)
                      .|+.|.|+|||.  ....++.-++.-+  +.   |.|...|=-.++-+..| -+. .+   +-...-+.+..++-+.+. 
T Consensus        56 kTtkG~i~Iel~--~~~~~~~~w~e~y--k~---~e~~~i~W~s~~~vAfG-p~~-s~---l~p~~~~~~y~r~DV~lg~  123 (508)
T PRK00969         56 KTTKGEIVIELT--EENESVDFWLENY--KE---FEGKSLRWTSRSAVAFG-PFE-SD---LEPSREEYEYERWDVVLSL  123 (508)
T ss_pred             EccCceEEEEEc--cCcchhhHHHHhH--Hh---hcCCceEeccccceeEc-ccc-cC---cccccCcceeecccEEEEc
Confidence            478999999999  3555666666655  33   56666654444433332 111 10   000000111112222221 


Q ss_pred             --cCCCCCeEEecCCCCCCC--C--CCCccceEEE-eccccCcccccC--CCcccccchhhhhhccCCCCCCCCCCChhh
Q psy10327         86 --FIPFGDLVDIQMPLDYET--E--KHQLFGRIIR-VNLAKPQKVQQT--SSKPVWASDTWLQKHAGETLDPENQIDPAE  156 (289)
Q Consensus        86 --~~~~Gs~fii~~~~p~ld--g--~~~vFG~Vi~-mdvv~~i~~~~~--~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~  156 (289)
                        |.+--+.+|+. ..+|..  |  .--+||+|+. ..+++++...+.  +-.||....+.........+          
T Consensus       124 ~G~dp~~thLIfs-k~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~D~I~sIEPVie~~e~~~~~~TtDl----------  192 (508)
T PRK00969        124 SGFDPSETHLIFS-KRDHSADYGAPNDGVIGRVVGGKRVLDRLTDGDRIISIEPVIEWKETSDYLVTTDL----------  192 (508)
T ss_pred             cCCCCCCceEEEE-ecchhhhhCCCCCCceEEEccchhhHhhccCCCeEEEEeeeEEehhcccceEEecC----------
Confidence              33322222221 111110  1  1279999997 999999887655  33333332222111111111          


Q ss_pred             hhhccCCCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCC
Q psy10327        157 KLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNH  236 (289)
Q Consensus       157 ~~~~~~~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~  236 (289)
                            .-......++|-.          +.+|| ...||.+++.|+.+.  +.|. +   .+-+....|+.        
T Consensus       193 ------~~~LEdG~~IfTy----------~eve~-~~~~p~s~EH~la~~--~~G~-f---~Vd~~tstfI~--------  241 (508)
T PRK00969        193 ------STVLEDGMKIFTY----------VEVEL-DPGAPKSVEHFLALL--EDGT-F---EVDFETSTFIA--------  241 (508)
T ss_pred             ------CccccCCCEEEEE----------EEEEE-cCCCCchHHHHHHHH--hCCe-E---EEeeeecceEe--------
Confidence                  1112333444544          33577 668999999999999  6775 1   11112112221        


Q ss_pred             CCCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCC
Q psy10327        237 NGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK  284 (289)
Q Consensus       237 ~g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~  284 (289)
                          ..+..|...+.|++..  .++|+|.+-+.|.++..  -||-..+
T Consensus       242 ----d~~L~g~~~p~En~~~--R~~GtVTVRt~G~g~G~--vYIyred  281 (508)
T PRK00969        242 ----DDRLQGLKIPEENFEP--RRRGTVTVRTAGVGVGK--VYIYRED  281 (508)
T ss_pred             ----eccccCccCCccccCc--cccceEEEEeeccCcee--EEEECCC
Confidence                1223344555665533  34799999887765443  5665443

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.07  Score=50.03  Aligned_cols=22  Identities=36%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCChHHHHHHHHhh
Q psy10327         12 RITIQLRYDLVPRTAENFRCLC   33 (289)
Q Consensus        12 ~i~ieL~~~~aP~t~~nF~~l~   33 (289)
                      -|+||||.+.||+++.-|+++.
T Consensus       377 iieIELyed~APrSv~yFRr~t  398 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRST  398 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhc
Confidence            4899999999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		6e-58
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		7e-57
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		5e-55
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-51
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-51
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		2e-51
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		2e-51
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		2e-51
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		3e-51
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		3e-51
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		3e-51
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		3e-51
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		3e-51
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		3e-51
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		3e-51
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		6e-51
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		7e-51
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		8e-51
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		9e-51
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		1e-50
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		2e-50
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-49
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		2e-49
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		3e-48
1dyw_A	173	Biochemical And Structural Characterization Of A Di		2e-43
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		6e-43
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		3e-41
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		3e-41
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-40
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		5e-40
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		5e-40
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		6e-40
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		7e-40
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-39
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		2e-39
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		3e-39
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		9e-39
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		1e-38
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		2e-38
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		9e-38
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		1e-37
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		1e-36
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		3e-36
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		7e-36
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		8e-36
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		1e-35
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		1e-35
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-35
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		8e-35
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		2e-33
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		2e-32
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		5e-32
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-31
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-31
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		2e-24
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		2e-24
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		2e-24
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		1e-21
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		8e-20
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		8e-19
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		8e-19
2cqb_A	102	Solution Structure Of The Rna Recognition Motif In		2e-18
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		2e-18
2kyx_A	83	Solution Structure Of The Rrm Domain Of Cyp33 Lengt		6e-17
3mdf_A	85	Crystal Structure Of The Rrm Domain Of Cyclophilin		9e-17
3lpy_A	79	Crystal Structure Of The Rrm Domain Of Cyp33 Length		3e-16
2ku7_A	140	Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric		1e-15
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		8e-14
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		3e-13
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		2e-11
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		6e-11
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		4e-09
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		6e-08
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		1e-04
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		1e-04
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		1e-04
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		1e-04
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		7e-04
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		7e-04
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		8e-04

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 111/129 (86%)
Query: 159 AASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSS 218
            + I  K + NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSS
Sbjct: 1   GSPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSS 60
Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
           FHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQF
Sbjct: 61  FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120
Query: 279 FLCTTKTEW 287
           FL   KT+W
Sbjct: 121 FLTCDKTDW 129

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  217 bits (552), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 99/121 (81%), Positives = 108/121 (89%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
           + NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F
Sbjct: 1   RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQF 60
Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
           MCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL   KT+
Sbjct: 61  MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 120
Query: 287 W 287
           W
Sbjct: 121 W 121

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  211 bits (536), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 98/126 (77%), Positives = 106/126 (84%)
Query: 162 IDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHR 221
           I  K + NPQVY DIKIG +  GRI   LR D+VP TAENFRCLCTHEKGFG++GSSFHR
Sbjct: 5   IAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHR 64
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
           IIP F CQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LS ANSGPNTNGSQFFL 
Sbjct: 65  IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLT 124
Query: 282 TTKTEW 287
             KT+W
Sbjct: 125 CDKTDW 130

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 103/119 (86%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP VY+D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 3   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 63  QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 121

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 103/119 (86%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP VY+D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 4   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 63
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 64  QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 122

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 103/119 (86%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP VY+D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 3   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 63  QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 121

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 103/119 (86%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP VY+D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 2   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 62  QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 120

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 103/124 (83%)
Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRII 223
           P+   NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRII
Sbjct: 6   PEFMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRII 65
Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
           P FMCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT 
Sbjct: 66  PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 125
Query: 284 KTEW 287
           KTEW
Sbjct: 126 KTEW 129

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 102/119 (85%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT+HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 62  QGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 62  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 22  NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 81
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 82  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 140

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  197 bits (501), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+L+MAN+GPNTNGSQFF+CT KTEW
Sbjct: 63  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEW 121

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FH+IIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  196 bits (499), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 62  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 120

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  196 bits (499), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 63  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 121

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 102/119 (85%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGG+FT+HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63  QGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 7   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 66
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 67  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 125

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 99/119 (83%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F C
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LS AN+GPNTNGSQFF+CT KTEW
Sbjct: 62  QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEW 120

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGG+FT+ NGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63  QGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 101/124 (81%), Gaps = 1/124 (0%)
Query: 165 KTKKN-PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRII 223
           K K+N P+V+ DI+IG  + GRI ++LR D+VPRTAENFR LCT E+GFGY    FHR+I
Sbjct: 5   KQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVI 64
Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
           P FMCQGGDF   +GTGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTT
Sbjct: 65  PQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Query: 284 KTEW 287
           K +W
Sbjct: 125 KCDW 128

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/124 (66%), Positives = 95/124 (76%), Gaps = 7/124 (5%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRII 223
           +V+ DI IG +  GRI ++L  D+VP+TA NFR LCT E G G       ++GS FHRII
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
           P+FM QGGDFT  NGTGG+SIYG KF DENF  KHTGPGVLSMAN+GPNTNGSQFFLCT 
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 284 KTEW 287
           KTEW
Sbjct: 125 KTEW 128

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  170 bits (431), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 89/117 (76%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
           QVY D++   Q +GR+  +L  D+VP+TAENFR LCT EKGFGY GS FHR+IPDFM QG
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQG 62
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFT  NGTGGKSIYG KF DENF   H  PG+LSMAN+GPNTNGSQFF+ T    W
Sbjct: 63  GDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPW 119

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 94/118 (79%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP V+ D+    + +GRIT++L  ++VPRTAENFR LCT EKGFG++ S FHR+IPDF+C
Sbjct: 6   NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVC 65
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
           QGGD T H+GTGG+SIYG+KFEDENF +KHTGPG+LSMAN G NTN SQF +   K E
Sbjct: 66  QGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAE 123

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 87/117 (74%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
            V+ DI      +G I  +L  D+VP+TA NFR LCT EKGFGY GS FHR+IPDFM QG
Sbjct: 3   NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQG 62
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFT  NGTGGKSIYG KF DENF LKH  PG+LSMAN+GPNTNGSQFF+ T  T W
Sbjct: 63  GDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSW 119

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 92/130 (70%), Gaps = 8/130 (6%)
Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQ 215
           P    NP+V+ D+ IG + VGRI ++L  D+VP+TAENFR LCT EKG G        ++
Sbjct: 10  PSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFK 69
Query: 216 GSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNG 275
           G  FHRII  FM QGGDF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN+G NTNG
Sbjct: 70  GCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNG 129
Query: 276 SQFFLCTTKT 285
           SQFF+ T  T
Sbjct: 130 SQFFITTVPT 139

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  161 bits (407), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 90/116 (77%)
Query: 172 VYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGG 231
           VY D+   ++ +GRI ++L  D+VP+TA+NFR LC   KG GY+GS+FHRIIP FM QGG
Sbjct: 30  VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGG 89
Query: 232 DFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           D+T HNGTGG+SIYG KF DENF LKHT  G+LSMAN G +TNGSQFF+   KT+W
Sbjct: 90  DYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQW 145

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 93/134 (69%), Gaps = 10/134 (7%)
Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQG 216
           P +  NP+V+ DI I  +  GRI ++L  D VP+TAENFR LCT EKG G       Y+ 
Sbjct: 2   PGSMTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKS 61
Query: 217 SSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILK---HTGPGVLSMANSGPNT 273
           S FHR+IP+FM QGGDFT  NGTGG+SIYG  F DE+F  K   HTG G LSMAN+GPNT
Sbjct: 62  SVFHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNT 121
Query: 274 NGSQFFLCTTKTEW 287
           NGSQFF+CT  T W
Sbjct: 122 NGSQFFICTAATPW 135

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  160 bits (406), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/130 (57%), Positives = 95/130 (73%), Gaps = 3/130 (2%)
Query: 161 SIDPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGS 217
           ++D K K+     +VY D++IG +++GR+ I L    VP+T +NF  L T EKGFGY+ S
Sbjct: 1   AMDEKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDS 60
Query: 218 SFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQ 277
            FHR+I DFM QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQ
Sbjct: 61  KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 120
Query: 278 FFLCTTKTEW 287
           FF+ T KT W
Sbjct: 121 FFITTVKTAW 130

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 4/125 (3%)
Query: 167 KKNPQV----YMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRI 222
           KK P+V    Y D++IG +++GR+ I L    VP+T +NF  L T EKGFGY+ S FHR+
Sbjct: 6   KKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRV 65
Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 282
           I DFM QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 283 TKTEW 287
            KT W
Sbjct: 126 VKTAW 130

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 7/126 (5%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHR 221
           NP VY DI IG+   GRIT++L  D VP TAENFR LCT EKG G       Y GS FHR
Sbjct: 19  NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHR 78
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
           IIP FM QGGDFT  +GTGG+SIYG+KF DENF+  H  P +LSMAN+GPNTNGSQFF+ 
Sbjct: 79  IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 282 TTKTEW 287
           T    W
Sbjct: 139 TVPCPW 144

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 91/125 (72%), Gaps = 4/125 (3%)
Query: 167 KKNPQV----YMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRI 222
           KK P+V    Y D++IG ++VGR+   L    VP+T +NF  L T EKGFGY+ S FHR+
Sbjct: 9   KKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRV 68
Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 282
           I DFM QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T
Sbjct: 69  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 283 TKTEW 287
            KT W
Sbjct: 129 VKTAW 133

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 88/117 (75%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
           +VY D++IG ++VGR+   L    VP+T +NF  L T EKGFGY+ S FHR+I DFM QG
Sbjct: 7   KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQG 66
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T KT W
Sbjct: 67  GDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 123

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  157 bits (396), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 87/117 (74%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
            V+ +I I  +  GRI  +L  + VP+TA+NFR L T + GFGY+ S FHR+IP FM QG
Sbjct: 4   NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQG 63
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T  T W
Sbjct: 64  GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSW 120

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 87/117 (74%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
            V+ +I I  +  GRI  +L  + VP+TA+NFR L T + GFGY+ S FHR+IP FM QG
Sbjct: 5   NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQG 64
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T  T W
Sbjct: 65  GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSW 121

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 89/117 (76%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
           +V+ D++IG ++VGRI I L  ++VP+T ENF  L T EKG+GY+GS FHR+I DFM QG
Sbjct: 9   KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQG 68
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFT  +GTGG SIYG  F DENF LKH G G +SMAN+GP+TNGSQFF+  TK  W
Sbjct: 69  GDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 125

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  153 bits (387), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 90/124 (72%), Gaps = 5/124 (4%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRII 223
           NP V+ D+ IG QEVGR+ I+L  D+VP+TAENFR  CT E        GY+GS+FHR+I
Sbjct: 10  NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 69
Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
            DFM QGGDF N +GTG  SIY   F DENF L+H+ PG+LSMANSGP+TNG QFF+  +
Sbjct: 70  KDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCS 129
Query: 284 KTEW 287
           K +W
Sbjct: 130 KCDW 133

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 87/117 (74%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
           +V+ D++IG ++VGRI I L   +VP+T ENF  L T EKG+GY+GS FHR+I DFM QG
Sbjct: 17  KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQG 76
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GD T  +GTGG SIYG  F DENF LKH G G +SMAN+GP+TNGSQFF+  TK  W
Sbjct: 77  GDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 133

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 85/121 (70%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
           K   +VY D++IG + +GRI I L    VP+TA NF  L    KG GY GS FHR+I DF
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63
Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
           M QGGDFT  +GTGG+SIYG KF DENF LKH G G LSMAN+G +TNGSQFF+ T KT 
Sbjct: 64  MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTP 123
Query: 287 W 287
           W
Sbjct: 124 W 124

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
           +VY DI IG + VGR+ I L  + VP+T ENF+ L + E GFGY+GS FHR+I +FM QG
Sbjct: 7   KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQG 66
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFTN +GTGGKSIYG +F+DEN  +KH   G +SMAN+GPN+NGSQFF+ T  T W
Sbjct: 67  GDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPW 122

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  147 bits (371), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
           +VY D+ I  + +GRITI L     P T ENFR LCT E GFGY+ S FHR+I +FM QG
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQG 72
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFTN +GTGGKSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF+ T  T W
Sbjct: 73  GDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPW 128

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  147 bits (370), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
           +VY D+ I  + +GRITI L     P T ENFR LCT E GFGY+ S FHR+I +FM QG
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQG 72
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GDFTN +GTGGKSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF+ T  T W
Sbjct: 73  GDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPW 128

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 149 ENQIDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTH 208
           EN I P        +P    NP V+MDI +G   +G+   +L  ++VP+T+ENFR  CT 
Sbjct: 42  ENTIIPYYLSNLLTNPS---NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTG 98
Query: 209 EKGF-----GYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGV 263
           E        GY+ + FHR+I +FM QGGDF NHNG+G  SIYG KF+DENF +KH   G+
Sbjct: 99  EYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGL 158
Query: 264 LSMANSGPNTNGSQFFLCTTKTEW 287
           LSMANSGPNTNG QFF+ T K EW
Sbjct: 159 LSMANSGPNTNGCQFFITTKKCEW 182

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 87/122 (71%), Gaps = 5/122 (4%)
Query: 171 QVYMDIK---IGKQE--VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
           QV+ D++   +G  E  VGRI   L    VP+TA+NFR LC    G GY+ S+FHRIIP+
Sbjct: 4   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPN 63
Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
           FM QGGDFT  NGTGG+SIYG+KF DENF  KH   G+LSMAN+GPNTNGSQFF+ T  T
Sbjct: 64  FMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVT 123
Query: 286 EW 287
            W
Sbjct: 124 SW 125

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK------GFGYQGSSFHR 221
           K  +V+ DI I     GRI  +L  D+ PRT ENFR LCT EK         Y+ S FHR
Sbjct: 2   KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
           IIP FMCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQFF+ 
Sbjct: 62  IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121
Query: 282 TTKTEW 287
                W
Sbjct: 122 LVPCPW 127

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK------GFGYQGSSFHR 221
           K  +V+ DI I     GRI  +L  D+ PRT ENFR LCT EK         Y+ S FHR
Sbjct: 2   KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
           IIP FMCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQF + 
Sbjct: 62  IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLIT 121
Query: 282 TTKTEW 287
                W
Sbjct: 122 LVPCPW 127

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSS 218
           + +PQ + DI+I ++ VGRI  QL  D+ P+T +NF CLC+ EKG G        Y+GS+
Sbjct: 17  RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76
Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
           FHR++ +FM QGGDF+  NG GG+SIYG  F+DENFILKH    +LSMAN G +TNGSQF
Sbjct: 77  FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136
Query: 279 FLCT 282
           F+ T
Sbjct: 137 FITT 140

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 84/125 (67%), Gaps = 8/125 (6%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSS 218
           K   +V++D+ I     GRI ++L  D+ PRT  NF  LCT   G G        Y+GS+
Sbjct: 4   KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 63
Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
           FHR+I +FM QGGDFT  +GTGG+SIYG  F+DE F++KH  P V+SMAN GPNTNGSQF
Sbjct: 64  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 123
Query: 279 FLCTT 283
           F+ TT
Sbjct: 124 FITTT 128

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 8/126 (6%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSF 219
           + P+ + DI I  Q  GR+  +L  D+ P+T ENFRCLCT EKG G        Y+   F
Sbjct: 25  QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 84
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF 279
           HR++ DFM QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNGSQFF
Sbjct: 85  HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFF 144
Query: 280 LCTTKT 285
           + T  T
Sbjct: 145 ITTKPT 150

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 8/126 (6%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSF 219
           + P+ + DI I  Q  GR+  +L  D+ P+T ENFRCLCT EKG G        Y+   F
Sbjct: 8   QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLF 67
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF 279
           HR++ DFM QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNGSQFF
Sbjct: 68  HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 280 LCTTKT 285
           + T  T
Sbjct: 128 ITTKPT 133

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 8/126 (6%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSF 219
           + P+ + DI I  Q  GR+  +L  D+ P+T ENFRCLCT EKG G        Y+   F
Sbjct: 8   QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 67
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF 279
           HR++ DFM QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNGSQFF
Sbjct: 68  HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 280 LCTTKT 285
           + T  T
Sbjct: 128 ITTKPT 133

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 10/129 (7%)
Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
           A+I P + + P VY++  +G      I ++L +   P+T +NF  L    +G+ Y G+ F
Sbjct: 2   AAIPPDSWQPPNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRGY-YNGTKF 53
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
           HRII DFM QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54  HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
Query: 279 FLCTTKTEW 287
           F+    T+W
Sbjct: 113 FVTLAPTQW 121

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 10/129 (7%)
Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
           A+I P + + P VY++  +G      I ++L +   P+T +NF  L    +G+ Y G+ F
Sbjct: 2   AAIPPDSWQPPNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRGY-YNGTKF 53
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
           HRII DFM QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54  HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
Query: 279 FLCTTKTEW 287
           F+    T+W
Sbjct: 113 FVTLAPTQW 121

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 10/129 (7%)
Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
           A+I P + + P VY++  +G      I ++L +   P+T +NF  L    +G+ Y G+ F
Sbjct: 2   AAIPPDSWQPPNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRGY-YNGTKF 53
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
           HRII DFM QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54  HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
Query: 279 FLCTTKTEW 287
           F+    T+W
Sbjct: 113 FVTLAPTQW 121

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G   ++L +   P+T  NF  LC  E GF Y  + FHR+IP+F+ QGGD T   G GGK
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGK 102
Query: 243 SIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 280
           SIYG  FEDE N  LKHTG G+LSM+N+GPNTN SQFF+
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFI 141

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFM 227
           + P+   D  I    +G I  +L     P+T ENF   C H +   Y G +FHRII  FM
Sbjct: 15  EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFM 71
Query: 228 CQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
            Q GD T   G GG+SI+G +FEDE +  L+H  P  LSMAN+G NTNGSQFF+    T 
Sbjct: 72  IQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP 130
Query: 287 W 287
           W
Sbjct: 131 W 131

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 182 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGG 241
           +VG I I++  +  P+T ENF  LC       Y G  FHR I  FM Q GD T   G GG
Sbjct: 14  DVGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGG 69
Query: 242 KSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
            SI+G KFEDE +  LKH   GV+SMAN+GPNTNGSQFF+   K
Sbjct: 70  NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 113

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 182 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGG 241
           +VG I I++  +  P+T ENF  LC       Y G  FHR I  FM Q GD T   G GG
Sbjct: 8   DVGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGG 63
Query: 242 KSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
            SI+G KFEDE +  LKH   GV+SMAN+GPNTNGSQFF+   K
Sbjct: 64  NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 107

>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In Peptidyl- Prolyl Cis-Trans Isomerase E Length = 102

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 24/85 (28%)
Query: 66  RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
           R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH                   
Sbjct: 13  RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 72
Query: 107 -----QLFGRIIRVNLAKPQKVQQT 126
                +LFGR IRVNLAKP +++++
Sbjct: 73  NMNESELFGRTIRVNLAKPMRIKES 97

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G I I L Y    +T +NF     H     Y    FHR+I  FM Q GD  + +GTGG+
Sbjct: 14  MGDIHISLFYKECKKTVQNFS---VHSINGYYNNCIFHRVIKHFMVQTGD-PSGDGTGGE 69
Query: 243 SIYGNKFEDENFI-LKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           SI+GN+FEDE F  L H+ P ++SMAN GPNTNGSQFF+ T    W
Sbjct: 70  SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPW 115

>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33 Length = 83

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 50/82 (60%), Gaps = 24/82 (29%)
Query: 62  SLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH--------------- 106
           S   R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH               
Sbjct: 2   STTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61
Query: 107 ---------QLFGRIIRVNLAK 119
                    +LFGR IRVNLAK
Sbjct: 62  AAIDNMNESELFGRTIRVNLAK 83

>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33 Length = 85

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 49/78 (62%), Gaps = 24/78 (30%)
Query: 66  RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
           R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH                   
Sbjct: 8   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67
Query: 107 -----QLFGRIIRVNLAK 119
                +LFGR IRVNLAK
Sbjct: 68  NMNESELFGRTIRVNLAK 85

>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33 Length = 79

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 48/77 (62%), Gaps = 24/77 (31%)
Query: 66  RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
           R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH                   
Sbjct: 3   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 62
Query: 107 -----QLFGRIIRVNLA 118
                +LFGR IRVNLA
Sbjct: 63  NMNESELFGRTIRVNLA 79

>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein Length = 140

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 48/77 (62%), Gaps = 24/77 (31%)
Query: 66  RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
           R   +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH                   
Sbjct: 64  RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 123
Query: 107 -----QLFGRIIRVNLA 118
                +LFGR IRVNLA
Sbjct: 124 NMNESELFGRTIRVNLA 140

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 180 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGT 239
           K   G I I+L     P+   NF  LC       Y  + FHR++P F+ QGGD T   G+
Sbjct: 30  KTTAGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPTG-TGS 85
Query: 240 GGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
           GG+SIYG  F+DE +  L+    G+++MAN+G + NGSQFF    + +
Sbjct: 86  GGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRAD 133

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G + ++L  DL P+T ENF  LC   K   Y G+ FHR I +F+ QGGD     GTGG+S
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGD-PTGTGTGGES 84
Query: 244 IYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 280
            +G  F+DE    L HTG G+LSMANSGPN+N SQFF+
Sbjct: 85  YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFI 122

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G +  +L     P+  +NF  L     G+ Y+ + FH+ I  F+ QGGD T   G GG+S
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGES 81
Query: 244 IYGNKFEDENFI-LKHTGPGVLSMANSG----PNTNGSQFFL 280
           IYG  F+DE +  LK+   G+LSMA+ G    PNTNGSQFF+
Sbjct: 82  IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFI 123

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDFMCQGG 231
           G I I L  +  P+T  NF  L    K +             Y G+ FHR+I  FM QGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 232 DFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
           D T     G    + ++F  E   L+   P +L+MAN+GP TNGSQFF+   KT
Sbjct: 93  DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKT 143

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G + I+L  D+ PR  ++F  LC  +    +  + FHR I +FM QGG       +  K 
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 244 IY-----------GNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
           +            G  FEDE +  L H G GVLSMAN G ++N S+FF+     E
Sbjct: 73  VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCE 127

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLC------THEKGFG---- 213
           P + KNP+VYMDI +  + +GR+ I+L  D  P   ENF  L        +  G G    
Sbjct: 9   PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKY 68
Query: 214 -------YQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNK-----FEDENFILKHTGP 261
                  Y+G  FH ++ +     GD  N NG+   ++Y ++     F D  +   H   
Sbjct: 69  NRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESK 126
Query: 262 GVLSMA 267
           G+LS+ 
Sbjct: 127 GLLSLV 132

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G I I+   D  P T +NF   C   +GF Y  + FHR+I  FM QGG F    G   K+
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKA 63
Query: 244 IYGNKFEDENFILKHTGPGVLSMANS-GPNTNGSQFFLCTTKTEW 287
                  + N  LK+T  G L+MA +  P++  +QFF+     ++
Sbjct: 64  TKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDF 107

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G I I+   D  P T +NF   C   +GF Y  + FHR+I  FM QGG F    G   K+
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKA 63
Query: 244 IYGNKFEDENFILKHTGPGVLSMANS-GPNTNGSQFFLCTTKTEW 287
                  + N  LK+T  G L+MA +  P++  +QFF+     ++
Sbjct: 64  TKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDF 107

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G + ++L     P    NF  LC   +G+ Y  + FHR++ DF+ QGGD T     G  
Sbjct: 30  LGDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGAD 86
Query: 243 SIY-GNKFEDENFI-LKHTGPGVLSMANSGPN--------------TNGSQFFLCTTKTE 286
           + + G  F+ E    LK    G++ +AN G +              TNG+QFF+   + +
Sbjct: 87  TTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARAD 146

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDF 233
           G IT++L  D  P TA NF       K   Y G+ FHR+I  FM QGG F
Sbjct: 9   GTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQGGGF 55

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 182 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFT 234
             G I ++L     P + +NF        GF Y  ++FHR+IP FM QGG FT
Sbjct: 12  SAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT 61

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 182 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFT 234
             G I ++L     P + +NF        GF Y  ++FHR+IP FM QGG FT
Sbjct: 12  SAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT 61

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G I ++L     P+T ENF  L   +KG  Y G+ FHR+I  FM QGG F    G   K 
Sbjct: 13  GVIKLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQGGGF--EPGLKQKP 67
Query: 244 IYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
                  + N  LK+    +     + P++  +QFF+     E+
Sbjct: 68  TDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEF 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1z81_A	229	Cyclophilin; structural genomics, structural genom	2e-96
1z81_A	229	Cyclophilin; structural genomics, structural genom	3e-25
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	2e-95
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-27
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	7e-95
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	8e-28
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	4e-94
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-27
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	5e-94
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	3e-27
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-93
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	3e-27
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-93
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-27
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	3e-93
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	3e-27
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	9e-93
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-25
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	4e-92
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	5e-26
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	6e-92
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-25
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	2e-91
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-25
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	3e-91
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	4e-26
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	3e-91
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-25
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	4e-91
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	9e-28
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	2e-90
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	4e-26
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	3e-90
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	3e-26
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	9e-25
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-79
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	9e-23
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	1e-54
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	3e-11
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	1e-54
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	5e-11
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	3e-54
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	8e-11
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	7e-53
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	5e-11
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-50
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-10
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	1e-46
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-09
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	2e-46
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	3e-09
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-45
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-08
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	2e-45
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	3e-09
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	1e-44
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	2e-10
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	6e-40
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	8e-08
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	8e-37
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	4e-08
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	5e-27
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	6e-08
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	3e-26
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	7e-08
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	1e-25
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	8e-08
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	5e-24
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	4e-05
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	2e-14
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	6e-14
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	4e-13
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	2e-12
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	7e-08
1x5p_A	97	Negative elongation factor E; structure genomics,	2e-07
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	2e-07
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	3e-07
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	3e-07
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	4e-07
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	5e-07
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	5e-07
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	7e-07
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	7e-07
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	2e-06
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	2e-06
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	3e-06
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	3e-06
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	3e-06
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	3e-06
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	4e-06
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	5e-06
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	6e-06
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	7e-06
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	1e-05
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	1e-05
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	2e-05
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	5e-05
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	2e-05
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	3e-05
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	4e-05
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	2e-04
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	4e-05
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	4e-05
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	4e-05
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	4e-05
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	4e-05
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	4e-05
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	5e-05
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	5e-05
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	5e-05
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	5e-05
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	5e-05
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	6e-05
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	6e-05
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	7e-05
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	1e-04
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	1e-04
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	2e-04
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	2e-04
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	2e-04
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	2e-04
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	3e-04
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	3e-04
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	3e-04
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	4e-04
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	4e-04
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	5e-04
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	5e-04
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	5e-04
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	6e-04
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	7e-04
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	7e-04
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	7e-04
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	8e-04

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  282 bits (723), Expect = 2e-96
 Identities = 74/180 (41%), Positives = 96/180 (53%), Gaps = 19/180 (10%)

Query: 127 SSKPVWASDTWLQKHAGETLDP--------------ENQIDPAEKLAASIDPKTKKNPQV 172
           SS       + L        +               +N  +       S       NP V
Sbjct: 3   SSHHHHHHSSGLVPRGSMKSNSKDSENKKVENLVLDDNDENTIIPYYLSNLLTNPSNPVV 62

Query: 173 YMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-----GYQGSSFHRIIPDFM 227
           +MDI +G   +G+   +L  ++VP+T+ENFR  CT E        GY+ + FHR+I +FM
Sbjct: 63  FMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFM 122

Query: 228 CQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
            QGGDF NHNG+G  SIYG KF+DENF +KH   G+LSMANSGPNTNG QFF+ T K EW
Sbjct: 123 IQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEW 182

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score = 99.8 bits (249), Expect = 3e-25
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 1   MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-----GYQGSSFHRIIPDF 53
           MDI +G   +G+   +L  ++VP+T+ENFR  CT E        GY+ + FHR+I +F
Sbjct: 64  MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  277 bits (712), Expect = 2e-95
 Identities = 101/129 (78%), Positives = 111/129 (86%)

Query: 159 AASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSS 218
            + I  K + NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSS
Sbjct: 1   GSPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSS 60

Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
           FHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQF
Sbjct: 61  FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120

Query: 279 FLCTTKTEW 287
           FL   KT+W
Sbjct: 121 FLTCDKTDW 129

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  104 bits (261), Expect = 1e-27
 Identities = 40/53 (75%), Positives = 45/53 (84%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          MDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F
Sbjct: 16 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQF 68

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  276 bits (708), Expect = 7e-95
 Identities = 83/127 (65%), Positives = 99/127 (77%)

Query: 161 SIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFH 220
               + +  P+V+ DI+IG  + GRI ++LR D+VPRTAENFR LCT E+GFGY    FH
Sbjct: 2   RTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFH 61

Query: 221 RIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 280
           R+IP FMCQGGDF   +GTGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+
Sbjct: 62  RVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFI 121

Query: 281 CTTKTEW 287
           CTTK +W
Sbjct: 122 CTTKCDW 128

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  104 bits (262), Expect = 8e-28
 Identities = 33/53 (62%), Positives = 40/53 (75%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           DI+IG  + GRI ++LR D+VPRTAENFR LCT E+GFGY    FHR+IP F
Sbjct: 15 FDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQF 67

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  275 bits (705), Expect = 4e-94
 Identities = 75/134 (55%), Positives = 91/134 (67%), Gaps = 2/134 (1%)

Query: 154 PAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG 213
           P         PK     +VY D++IG ++VGR+   L    VP+T +NF  L T EKGFG
Sbjct: 2   PLGSDEKKKGPKV--TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG 59

Query: 214 YQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNT 273
           Y+ S FHR+I DFM QGGDFT  +GTGGKSIYG +F DENF LKH GPG +SMAN+G +T
Sbjct: 60  YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDT 119

Query: 274 NGSQFFLCTTKTEW 287
           NGSQFF+ T KT W
Sbjct: 120 NGSQFFITTVKTAW 133

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  104 bits (262), Expect = 1e-27
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           D++IG ++VGR+   L    VP+T +NF  L T EKGFGY+ S FHR+I DF
Sbjct: 20 FDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF 72

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  274 bits (703), Expect = 5e-94
 Identities = 89/134 (66%), Positives = 104/134 (77%)

Query: 154 PAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG 213
                  ++  +   NP V+ DI +  + +GR++ +L  D VP+TAENFR L T EKGFG
Sbjct: 7   HHSSGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG 66

Query: 214 YQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNT 273
           Y+GS FHRIIP FMCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNT
Sbjct: 67  YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNT 126

Query: 274 NGSQFFLCTTKTEW 287
           NGSQFF+CT KTEW
Sbjct: 127 NGSQFFICTAKTEW 140

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  103 bits (260), Expect = 3e-27
 Identities = 31/53 (58%), Positives = 39/53 (73%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           DI +  + +GR++ +L  D VP+TAENFR L T EKGFGY+GS FHRIIP F
Sbjct: 27 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 79

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  274 bits (702), Expect = 1e-93
 Identities = 73/133 (54%), Positives = 93/133 (69%)

Query: 155 AEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGY 214
             +         + +  VY D+   ++ +GRI ++L  D+VP+TA+NFR LC   KG GY
Sbjct: 13  EAQTQGPGSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGY 72

Query: 215 QGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN 274
           +GS+FHRIIP FM QGGD+T HNGTGG+SIYG KF DENF LKHT  G+LSMAN G +TN
Sbjct: 73  KGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTN 132

Query: 275 GSQFFLCTTKTEW 287
           GSQFF+   KT+W
Sbjct: 133 GSQFFITLGKTQW 145

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  103 bits (260), Expect = 3e-27
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           D+   ++ +GRI ++L  D+VP+TA+NFR LC   KG GY+GS+FHRIIP F
Sbjct: 32 FDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGF 84

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  272 bits (699), Expect = 1e-93
 Identities = 85/119 (71%), Positives = 103/119 (86%)

Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP VY+D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 3   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 62

Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 63  QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 121

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  103 bits (259), Expect = 2e-27
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F
Sbjct: 8  LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSF 60

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  271 bits (696), Expect = 3e-93
 Identities = 73/119 (61%), Positives = 87/119 (73%)

Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
              V+ +I I  +  GRI  +L  + VP+TA+NFR L T + GFGY+ S FHR+IP FM 
Sbjct: 2   MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFML 61

Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T  T W
Sbjct: 62  QGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSW 120

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  102 bits (258), Expect = 3e-27
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           +I I  +  GRI  +L  + VP+TA+NFR L T + GFGY+ S FHR+IP F
Sbjct: 7  FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQF 59

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  271 bits (695), Expect = 9e-93
 Identities = 79/139 (56%), Positives = 92/139 (66%), Gaps = 7/139 (5%)

Query: 156 EKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-- 213
              +   +   + NP VY DI IG+   GRIT++L  D VP TAENFR LCT EKG G  
Sbjct: 6   HHSSGRENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQS 65

Query: 214 -----YQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMAN 268
                Y GS FHRIIP FM QGGDFT  +GTGG+SIYG+KF DENF+  H  P +LSMAN
Sbjct: 66  GKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMAN 125

Query: 269 SGPNTNGSQFFLCTTKTEW 287
           +GPNTNGSQFF+ T    W
Sbjct: 126 AGPNTNGSQFFITTVPCPW 144

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score = 98.8 bits (247), Expect = 2e-25
 Identities = 35/60 (58%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
           DI IG+   GRIT++L  D VP TAENFR LCT EKG G       Y GS FHRIIP F
Sbjct: 24 FDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQF 83

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  269 bits (691), Expect = 4e-92
 Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 5/132 (3%)

Query: 161 SIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQ 215
           ++   +  NP V+ D+ IG QEVGR+ I+L  D+VP+TAENFR  CT E        GY+
Sbjct: 2   AVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYK 61

Query: 216 GSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNG 275
           GS+FHR+I DFM QGGDF N +GTG  SIY   F DENF L+H+ PG+LSMANSGP+TNG
Sbjct: 62  GSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNG 121

Query: 276 SQFFLCTTKTEW 287
            QFF+  +K +W
Sbjct: 122 CQFFITCSKCDW 133

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  100 bits (251), Expect = 5e-26
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 5/59 (8%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDFV 54
           D+ IG QEVGR+ I+L  D+VP+TAENFR  CT E        GY+GS+FHR+I DF+
Sbjct: 15 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFM 73

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  268 bits (689), Expect = 6e-92
 Identities = 71/126 (56%), Positives = 82/126 (65%), Gaps = 6/126 (4%)

Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK------GFGYQGSSFHR 221
           K  +V+ DI I     GRI  +L  D+ PRT ENFR LCT EK         Y+ S FHR
Sbjct: 2   KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61

Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
           IIP FMCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQFF+ 
Sbjct: 62  IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121

Query: 282 TTKTEW 287
                W
Sbjct: 122 LVPCPW 127

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score = 98.0 bits (245), Expect = 2e-25
 Identities = 29/59 (49%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK------GFGYQGSSFHRIIPDF 53
           DI I     GRI  +L  D+ PRT ENFR LCT EK         Y+ S FHRIIP F
Sbjct: 8  FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQF 66

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  267 bits (686), Expect = 2e-91
 Identities = 83/126 (65%), Positives = 95/126 (75%), Gaps = 7/126 (5%)

Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHR 221
             +V+ DI IG +  GRI ++L  D+VP+TA NFR LCT E G G       ++GS FHR
Sbjct: 3   RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62

Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
           IIP+FM QGGDFT  NGTGG+SIYG KF DENF  KHTGPGVLSMAN+GPNTNGSQFFLC
Sbjct: 63  IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLC 122

Query: 282 TTKTEW 287
           T KTEW
Sbjct: 123 TVKTEW 128

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score = 98.7 bits (247), Expect = 1e-25
 Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 7/60 (11%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
           DI IG +  GRI ++L  D+VP+TA NFR LCT E G G       ++GS FHRIIP+F
Sbjct: 8  FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNF 67

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  267 bits (686), Expect = 3e-91
 Identities = 68/143 (47%), Positives = 89/143 (62%), Gaps = 8/143 (5%)

Query: 153 DPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF 212
                   S     + +PQ + DI+I ++ VGRI  QL  D+ P+T +NF CLC+ EKG 
Sbjct: 3   SSHHHHHHSSGLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGL 62

Query: 213 G--------YQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVL 264
           G        Y+GS+FHR++ +FM QGGDF+  NG GG+SIYG  F+DENFILKH    +L
Sbjct: 63  GKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLL 122

Query: 265 SMANSGPNTNGSQFFLCTTKTEW 287
           SMAN G +TNGSQFF+ T     
Sbjct: 123 SMANRGKHTNGSQFFITTKPAPH 145

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  100 bits (252), Expect = 4e-26
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 8/61 (13%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
           DI+I ++ VGRI  QL  D+ P+T +NF CLC+ EKG G        Y+GS+FHR++ +
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83

Query: 53 F 53
          F
Sbjct: 84 F 84

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  267 bits (684), Expect = 3e-91
 Identities = 71/124 (57%), Positives = 86/124 (69%), Gaps = 5/124 (4%)

Query: 169 NPQVYMDIK-----IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRII 223
             QV+ D++       + +VGRI   L    VP+TA+NFR LC    G GY+ S+FHRII
Sbjct: 2   MSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRII 61

Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
           P+FM QGGDFT  NGTGG+SIYG+KF DENF  KH   G+LSMAN+GPNTNGSQFF+ T 
Sbjct: 62  PNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTA 121

Query: 284 KTEW 287
            T W
Sbjct: 122 VTSW 125

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score = 98.8 bits (247), Expect = 1e-25
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 2  DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           +   + +VGRI   L    VP+TA+NFR LC    G GY+ S+FHRIIP+F
Sbjct: 13 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNF 64

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  266 bits (683), Expect = 4e-91
 Identities = 73/124 (58%), Positives = 86/124 (69%), Gaps = 1/124 (0%)

Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRII 223
            + +   +VY D+ I  + +GRITI L     P T ENFR LCT E GFGY+ S FHR+I
Sbjct: 6   HEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVI 65

Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
            +FM QGGDFTN +GTGGKSIYG KF DEN  +KH   G LSMAN+GPNTNGSQFF+ T 
Sbjct: 66  QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124

Query: 284 KTEW 287
            T W
Sbjct: 125 PTPW 128

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  104 bits (262), Expect = 9e-28
 Identities = 28/53 (52%), Positives = 34/53 (64%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           D+ I  + +GRITI L     P T ENFR LCT E GFGY+ S FHR+I +F
Sbjct: 16 FDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNF 68

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  265 bits (679), Expect = 2e-90
 Identities = 66/129 (51%), Positives = 84/129 (65%), Gaps = 8/129 (6%)

Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSS 218
           K   +V++D+ I     GRI ++L  D+ PRT  NF  LCT   G G        Y+GS+
Sbjct: 4   KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 63

Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
           FHR+I +FM QGGDFT  +GTGG+SIYG  F+DE F++KH  P V+SMAN GPNTNGSQF
Sbjct: 64  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 123

Query: 279 FLCTTKTEW 287
           F+ TT    
Sbjct: 124 FITTTPAPH 132

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  100 bits (251), Expect = 4e-26
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
          +D+ I     GRI ++L  D+ PRT  NF  LCT   G G        Y+GS+FHR+I +
Sbjct: 11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 70

Query: 53 F 53
          F
Sbjct: 71 F 71

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  264 bits (678), Expect = 3e-90
 Identities = 65/132 (49%), Positives = 82/132 (62%), Gaps = 8/132 (6%)

Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQ 215
               + P+ + DI I  Q  GR+  +L  D+ P+T ENFRCLCT EKG G        Y+
Sbjct: 4   GIKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYK 63

Query: 216 GSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNG 275
              FHR++ DFM QGGDF+  NG GG+SIYG  FEDE+F +KH    +LSMAN G +TNG
Sbjct: 64  SCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNG 123

Query: 276 SQFFLCTTKTEW 287
           SQFF+ T  T  
Sbjct: 124 SQFFITTKPTPH 135

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  100 bits (252), Expect = 3e-26
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 8/61 (13%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
           DI I  Q  GR+  +L  D+ P+T ENFRCLCT EKG G        Y+   FHR++ D
Sbjct: 14 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKD 73

Query: 53 F 53
          F
Sbjct: 74 F 74

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  260 bits (666), Expect = 7e-86
 Identities = 77/137 (56%), Positives = 93/137 (67%), Gaps = 8/137 (5%)

Query: 159 AASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG----- 213
           +    P    NP+V+ D+ IG + VGRI ++L  D+VP+TAENFR LCT EKG G     
Sbjct: 5   SPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGK 64

Query: 214 ---YQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSG 270
              ++G  FHRII  FM QGGDF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN+G
Sbjct: 65  PLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAG 124

Query: 271 PNTNGSQFFLCTTKTEW 287
            NTNGSQFF+ T  T  
Sbjct: 125 SNTNGSQFFITTVPTPH 141

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  100 bits (252), Expect = 9e-25
 Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
           D+ IG + VGRI ++L  D+VP+TAENFR LCT EKG G        ++G  FHRII  
Sbjct: 20 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKK 79

Query: 53 FV 54
          F+
Sbjct: 80 FM 81

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  240 bits (613), Expect = 1e-79
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 30/154 (19%)

Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG------------ 211
           P + KNP+VYMDI +  + +GR+ I+L  D  P   ENF  L   +              
Sbjct: 9   PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKY 68

Query: 212 -----FGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFED---ENFILKHTGPGV 263
                  Y+G  FH ++ +     GD  N NG+   ++Y ++       ++   H   G+
Sbjct: 69  NRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGL 128

Query: 264 LSMA----NSGPNTNGSQFFLC------TTKTEW 287
           LS+      SG     S F +       +   + 
Sbjct: 129 LSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDE 162

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score = 92.9 bits (231), Expect = 9e-23
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 17/70 (24%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----------------FGYQG 43
          MDI +  + +GR+ I+L  D  P   ENF  L   +                     Y+G
Sbjct: 19 MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEG 78

Query: 44 SSFHRIIPDF 53
            FH ++ + 
Sbjct: 79 CKFHNVLHNN 88

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  174 bits (443), Expect = 1e-54
 Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 5/123 (4%)

Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
             + P+   D  I    +G I  +L     P+T ENF        G+ Y G +FHRII  
Sbjct: 13  QAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKG 69

Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
           FM Q GD T   G GG+SI+G +FEDE +  L+H  P  LSMAN+G NTNGSQFF+    
Sbjct: 70  FMIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVP 128

Query: 285 TEW 287
           T W
Sbjct: 129 TPW 131

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 2  DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          D  I    +G I  +L     P+T ENF        G+ Y G +FHRII  F
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGF 70

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  174 bits (444), Expect = 1e-54
 Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 10/129 (7%)

Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
           A+I P + + P VY++       +G I ++L +   P+T +NF  L    +G+ Y G+ F
Sbjct: 2   AAIPPDSWQPPNVYLET-----SMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKF 53

Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
           HRII DFM QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54  HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112

Query: 279 FLCTTKTEW 287
           F+    T+W
Sbjct: 113 FVTLAPTQW 121

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +G I ++L +   P+T +NF  L    +G+ Y G+ FHRII DF
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF 60

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  172 bits (439), Expect = 3e-54
 Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 10/129 (7%)

Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
           A+I P + + P VY++       +G I ++L +   P+T +NF  L    +G+ Y G+ F
Sbjct: 2   AAIPPDSWQPPNVYLET-----SMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKF 53

Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
           HRII DFM QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54  HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112

Query: 279 FLCTTKTEW 287
           F+    T+W
Sbjct: 113 FVTLAPTQW 121

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score = 58.4 bits (142), Expect = 8e-11
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +G I ++L +   P+T +NF  L    +G+ Y G+ FHRII DF
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDF 60

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  168 bits (429), Expect = 7e-53
 Identities = 51/106 (48%), Positives = 65/106 (61%), Gaps = 5/106 (4%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G I I L Y    +T +NF        G+ Y    FHR+I  FM Q GD +  +GTGG+
Sbjct: 14  MGDIHISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHFMVQTGDPSG-DGTGGE 69

Query: 243 SIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           SI+GN+FEDE F  L H+ P ++SMAN GPNTNGSQFF+ T    W
Sbjct: 70  SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPW 115

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score = 58.7 bits (143), Expect = 5e-11
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +G I I L Y    +T +NF        G+ Y    FHR+I  F
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHSI--NGY-YNNCIFHRVIKHF 54

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  164 bits (416), Expect = 2e-50
 Identities = 55/106 (51%), Positives = 68/106 (64%), Gaps = 5/106 (4%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G   ++L +   P+T  NF  LC  E GF Y  + FHR+IP+F+ QGGD T   G GGK
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGK 102

Query: 243 SIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           SIYG  FEDE N  LKHTG G+LSM+N+GPNTN SQFF+       
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPH 148

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          +G   ++L +   P+T  NF  LC  E GF Y  + FHR+IP+F
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNF 87

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  153 bits (389), Expect = 1e-46
 Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 9/128 (7%)

Query: 165 KTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIP 224
            +     +Y          G +  +L     P+  +NF  L     G+ Y+ + FH+ I 
Sbjct: 7   HSSGRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIK 63

Query: 225 DFMCQGGDFTNHNGTGGKSIYGNKFEDENFI-LKHTGPGVLSMANSG----PNTNGSQFF 279
            F+ QGGD T   G GG+SIYG  F+DE +  LK+   G+LSMA+ G    PNTNGSQFF
Sbjct: 64  GFIIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFF 122

Query: 280 LCTTKTEW 287
           +  +    
Sbjct: 123 ITYSSLPQ 130

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           G +  +L     P+  +NF  L     G+ Y+ + FH+ I  F
Sbjct: 25 YGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGF 65

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  152 bits (387), Expect = 2e-46
 Identities = 54/106 (50%), Positives = 64/106 (60%), Gaps = 5/106 (4%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           VG I I++  +  P+T ENF  LC     + Y G  FHR I  FM Q GD T   G GG 
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTG-TGRGGN 64

Query: 243 SIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           SI+G KFEDE +  LKH   GV+SMAN+GPNTNGSQFF+   K   
Sbjct: 65  SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPH 110

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          VG I I++  +  P+T ENF  LC     + Y G  FHR I  F
Sbjct: 9  VGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGF 49

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  151 bits (383), Expect = 1e-45
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 156 EKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQ 215
               +S        P     + + K   G I I+L     P+   NF  LC   + + Y 
Sbjct: 7   HHHHSSGLVPRGSEPPTNGKVLL-KTTAGDIDIELWSKEAPKACRNFIQLC--LEAY-YD 62

Query: 216 GSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTN 274
            + FHR++P F+ QGGD T   G+GG+SIYG  F+DE +  L+    G+++MAN+G + N
Sbjct: 63  NTIFHRVVPGFIVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDN 121

Query: 275 GSQFFLCTTKTEW 287
           GSQFF    + + 
Sbjct: 122 GSQFFFTLGRADE 134

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
           G I I+L     P+   NF  LC   + + Y  + FHR++P F+
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFI 74

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  150 bits (382), Expect = 2e-45
 Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 5/106 (4%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
            G + ++L  DL P+T ENF  LC  +K + Y G+ FHR I +F+ QGGD T   GTGG+
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTG-TGTGGE 83

Query: 243 SIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           S +G  F+DE    L HTG G+LSMANSGPN+N SQFF+      +
Sbjct: 84  SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAY 129

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           G + ++L  DL P+T ENF  LC  +K + Y G+ FHR I +F
Sbjct: 28 KGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNF 68

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  149 bits (377), Expect = 1e-44
 Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 15/117 (12%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNH----NG 238
            G + I+L  D+ PR  ++F  LC     + +  + FHR I +FM QGG           
Sbjct: 15  QGSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSKKK 71

Query: 239 TGGKSIY-------GNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
              +S         G  FEDE +  L H G GVLSMAN G ++N S+FF+     E 
Sbjct: 72  EVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEH 128

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           G + I+L  D+ PR  ++F  LC     + +  + FHR I +F
Sbjct: 15 QGSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNF 55

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  136 bits (345), Expect = 6e-40
 Identities = 49/148 (33%), Positives = 63/148 (42%), Gaps = 22/148 (14%)

Query: 153 DPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF 212
             +     S+           +         G I I L  +  P+T  NF  L    K +
Sbjct: 7   HHSGADCDSVTNSPLATATATL-----HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDY 61

Query: 213 G------------YQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHT 259
                        Y G+ FHR+I  FM QGGD T   G GG    G KF DE +  L+  
Sbjct: 62  STQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYKFADEFHPELQFD 117

Query: 260 GPGVLSMANSGPNTNGSQFFLCTTKTEW 287
            P +L+MAN+GP TNGSQFF+   KT  
Sbjct: 118 KPYLLAMANAGPGTNGSQFFITVGKTPH 145

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 12/55 (21%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDF 53
          G I I L  +  P+T  NF  L    K +             Y G+ FHR+I  F
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGF 87

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  129 bits (327), Expect = 8e-37
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 21/122 (17%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G + ++L     P    NF  LC   +G+ Y  + FHR++ DF+ QGGD T   G GG 
Sbjct: 30  LGDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPTG-TGRGGA 85

Query: 243 --SIYGNKFEDE-NFILKHTGPGVLSMANSGPN--------------TNGSQFFLCTTKT 285
             +  G  F+ E +  LK    G++ +AN G +              TNG+QFF+   + 
Sbjct: 86  DTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARA 145

Query: 286 EW 287
           + 
Sbjct: 146 DV 147

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +G + ++L     P    NF  LC   +G+ Y  + FHR++ DF+
Sbjct: 30 LGDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFI 71

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  102 bits (257), Expect = 5e-27
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFM 227
               V +         G I ++L     P+T ENF      +KG  Y G+ FHR+I  FM
Sbjct: 2   PGSMVEL-----HTNHGVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFM 53

Query: 228 CQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMA-NSGPNTNGSQFF 279
            QGG F         +       +E N  LK+     ++MA  + P++  +QFF
Sbjct: 54  IQGGGFE-PGLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFF 103

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I ++L     P+T ENF      +KG  Y G+ FHR+I  F+
Sbjct: 13 GVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFM 53

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  100 bits (251), Expect = 3e-26
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G I I+   D  P T +NF   C   +GF Y  + FHR+I  FM QGG F        + 
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFE---PGMKQK 62

Query: 244 IYGNKFEDE--NFILKHTGPGVLSMA-NSGPNTNGSQFF 279
                 ++E  N  LK+T  G L+MA    P++  +QFF
Sbjct: 63  ATKEPIKNEANNG-LKNT-RGTLAMARTQAPHSATAQFF 99

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score = 50.2 bits (121), Expect = 7e-08
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I I+   D  P T +NF   C   +GF Y  + FHR+I  F+
Sbjct: 9  GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFM 49

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 98.8 bits (247), Expect = 1e-25
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 12/114 (10%)

Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
           K +P V +         G I ++L     P + +NF        GF Y  ++FHR+IP F
Sbjct: 2   KGDPHVLLTT-----SAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGF 53

Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMA-NSGPNTNGSQFF 279
           M QGG FT       K     K E +N  L++T  G ++MA  +  ++  SQFF
Sbjct: 54  MIQGGGFTE-QMQQKKPNPPIKNEADNG-LRNT-RGTIAMARTADKDSATSQFF 104

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I ++L     P + +NF        GF Y  ++FHR+IP F+
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFM 54

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 99.0 bits (246), Expect = 5e-24
 Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 38/171 (22%)

Query: 145 TLDPENQIDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRC 204
            +  E +  P  K  AS+D K K      ++            I L     P TA NF  
Sbjct: 156 EVPEEYRNMPLLKGRASVDMKVKIKDNPNIED-------CVFRIVLDGYNAPVTAGNFVD 208

Query: 205 LCTHEKGFGYQGSSFHRIIPDFMCQGGD-------FTNHNGTGGKSI------------- 244
           L   E+ F Y G    R    F+ Q GD       F + +    +++             
Sbjct: 209 LV--ERHF-YDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPF 264

Query: 245 YGNKFED-----ENFILKHTGPGVLSMANSG--PNTNGSQFFLCTTKTEWN 288
           YG+  E+        ++     G ++MA      ++  SQ F    ++E  
Sbjct: 265 YGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELT 315

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 11  GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
               I L     P TA NF  L   E+ F Y G    R    FV
Sbjct: 188 CVFRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQR-SDGFV 227

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 24/82 (29%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQ----------------------- 107
           GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH+                       
Sbjct: 18  GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77

Query: 108 -LFGRIIRVNLAKPQKVQQTSS 128
            LFGR IRVNLAKP +++++  
Sbjct: 78  ELFGRTIRVNLAKPMRIKESGP 99

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ALT splicing, mRNA processing, mRNA splicing; 1.85A {Homo sapiens} PDB: 2kyx_A 3lpy_A* Length = 85

 Score = 64.9 bits (159), Expect = 6e-14
 Identities = 43/73 (58%), Positives = 47/73 (64%), Gaps = 24/73 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQ----------------------- 107
           GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH+                       
Sbjct: 13  GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72

Query: 108 -LFGRIIRVNLAK 119
            LFGR IRVNLAK
Sbjct: 73  ELFGRTIRVNLAK 85

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Length = 140

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 42/72 (58%), Positives = 46/72 (63%), Gaps = 24/72 (33%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQ----------------------- 107
           GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH+                       
Sbjct: 69  GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128

Query: 108 -LFGRIIRVNLA 118
            LFGR IRVNLA
Sbjct: 129 ELFGRTIRVNLA 140

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 105

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQ----------------------- 107
           GGL E+V + +L   F+  G +V+  MP D  T +HQ                       
Sbjct: 21  GGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80

Query: 108 -LFGRIIRVNLAKPQK 122
            L+G+ IRVN A    
Sbjct: 81  KLYGKPIRVNKASAHN 96

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 25/92 (27%)

Query: 64  KSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD------------YETEK---- 105
                 L  GGL  E ++K+L A F   G + ++ +  D            +E       
Sbjct: 4   ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63

Query: 106 -------HQLFGRIIRVNLAKPQKVQQTSSKP 130
                    L G+ I+V  AK    Q    + 
Sbjct: 64  AAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRR 95

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 20/76 (26%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD-------YETEKH-----------QLFGRI 112
            G   ++   +L  AF PFG+++D+ M          YE  +            Q+    
Sbjct: 21  YGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78

Query: 113 IRVNLAKPQKVQQTSS 128
           ++VN+A+ Q +  +  
Sbjct: 79  LKVNIARKQPMLDSGP 94

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Length = 106

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
            G+ EE  ++ ++  F  +G++ +I + LD  T                           
Sbjct: 29  TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 88

Query: 107 QLFGRIIRVNLAKPQK 122
            L G+ I V+    + 
Sbjct: 89  DLMGQPISVDWCFVRG 104

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 18/87 (20%)

Query: 61  QSLKSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDY----------------E 102
            S  ++   L    LA  V +++L  AF  FG L  ++   DY                E
Sbjct: 5   SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64

Query: 103 TEKHQLFGRIIRVNLAKPQKVQQTSSK 129
                L G  I +  AKP   ++   K
Sbjct: 65  MNGKDLEGENIEIVFAKPPDQKRKERK 91

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
             L        L   F  +G + D+ +P +  T+                          
Sbjct: 19  DNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA 78

Query: 107 QLFGRIIRVNLAKPQK 122
           +L GR +RV +A+  +
Sbjct: 79  ELDGRELRVQVARYGR 94

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Length = 165

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------------ 106
             + EE  +  +   F  +G++ +I + LD  T                           
Sbjct: 78  TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137

Query: 107 QLFGRIIRVNLAKPQK 122
           ++ G+ I+V+    + 
Sbjct: 138 EIMGQTIQVDWCFVKG 153

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 22/78 (28%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK----------------------HQL 108
           G L+ +V + ++   F   G     +M  ++ +                         ++
Sbjct: 21  GNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI 80

Query: 109 FGRIIRVNLAKPQKVQQT 126
            G+ ++VN A     Q++
Sbjct: 81  LGKEVKVNWATTPSSQKS 98

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Length = 110

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
             + EE  +  +   F  +G++ +I + LD  T                           
Sbjct: 32  TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91

Query: 107 QLFGRIIRVNLAKPQK 122
           ++ G+ I+V+    + 
Sbjct: 92  EIMGQTIQVDWCFVKG 107

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
             L+E+  +  L   F PFG +  I +  D  T +                         
Sbjct: 21  TNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80

Query: 107 QLFGRIIRVNLAKPQK 122
                I+ V  AKP  
Sbjct: 81  GYDHLILNVEWAKPST 96

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Length = 129

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
            GL+    ++ L   F  +G + D+ +  D ++ +                         
Sbjct: 52  FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111

Query: 107 QLFGRIIRVNLAKPQK 122
           +L GR IRV+ +  ++
Sbjct: 112 ELDGRRIRVDFSITKR 127

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 23/81 (28%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
           GG+     +  L   F  FG + ++ M  D E ++                       H 
Sbjct: 16  GGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHD 75

Query: 108 LFGRIIRVNLAKPQKVQQTSS 128
           + G+ + V  A+P+  + +  
Sbjct: 76  IMGKKVEVKRAEPRDSKSSGP 96

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Length = 135

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
             L        L   F  +G + D+ +P D  T++                         
Sbjct: 53  DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 112

Query: 107 QLFGRIIRVNLAKPQK 122
            L GR +RV +A+  +
Sbjct: 113 VLDGRELRVQMARYGR 128

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Length = 88

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 25/77 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD-YETEKH----------------------- 106
           G L   V    +   F  +G +  I MP++                              
Sbjct: 10  GRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 69

Query: 107 -QLFGRIIRVNLAKPQK 122
            Q+ G+ I         
Sbjct: 70  GQIDGQEITATAVLAPW 86

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 24/75 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYET------------------------EKH 106
           GGL+ + +++ L   F  +G + ++ +  D ET                           
Sbjct: 18  GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77

Query: 107 QLFGRIIRVNLAKPQ 121
            + GR IRV+ A   
Sbjct: 78  SVDGRQIRVDQAGKS 92

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Length = 126

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
            G+ EE  ++ ++  F  +G++ +I + LD  T                           
Sbjct: 28  TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 87

Query: 107 QLFGRIIRVNLAKPQK 122
            L G+ I V+    + 
Sbjct: 88  DLMGQPISVDWCFVRG 103

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
             L        L   F  +G + D+ +P D  T++                         
Sbjct: 76  DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135

Query: 107 QLFGRIIRVNLAKPQK 122
            L GR +RV +A+  +
Sbjct: 136 VLDGRELRVQMARYGR 151

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD-------YETEKH-----------QLFGRI 112
           GG+A  + D+++   F PFG +++I++  +       + T +             + G +
Sbjct: 31  GGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90

Query: 113 IRVNLAKPQ--KVQQTSS 128
           ++    K         SS
Sbjct: 91  VKCYWGKESPDMTSGPSS 108

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 24/75 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
           G L   + + +L   F PFG + +I +  D +T +                         
Sbjct: 11  GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70

Query: 107 QLFGRIIRVNLAKPQ 121
           +L GR +RV     +
Sbjct: 71  ELAGRPMRVGHVTER 85

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 95

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 24/73 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
            GL+    ++ L   F  +G + D+ +  D ++ +                         
Sbjct: 21  FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 80

Query: 107 QLFGRIIRVNLAK 119
           +L GR IRV+   
Sbjct: 81  ELDGRRIRVSGPS 93

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 26/91 (28%)

Query: 64  KSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK---------------- 105
           KS    L    +     D  L   F  FG ++D+++  +    K                
Sbjct: 12  KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 71

Query: 106 ------HQLFGRIIRVNLAKPQKVQQTSSKP 130
                   + GR I VN A  +    T+S P
Sbjct: 72  REKLHGTVVEGRKIEVNNATAR--VMTNSGP 100

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 115

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------------ 106
             L+  V ++ L + F  F +     +     T +                         
Sbjct: 31  KNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90

Query: 107 QLFGRIIRVNLAKPQK 122
           +L+G+I+ +   K +K
Sbjct: 91  KLYGKILVIEFGKNKK 106

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 60/348 (17%), Positives = 98/348 (28%), Gaps = 104/348 (29%)

Query: 1   MDIKIGKQEVGRITIQLRY-DLVPRTAENFR--CLCTH----EKGFGYQGSSFHRII--P 51
           MD + G+        Q +Y D++    + F     C       K           II   
Sbjct: 7   MDFETGEH-------QYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSK 58

Query: 52  D--------FVSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFI--PFGDLVDIQMPLD- 100
           D        F + ++K + +  +F       EEV     N  F+  P       Q  +  
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKF------VEEVLRI--NYKFLMSPIKT-EQRQPSMMT 109

Query: 101 --YETEKHQLFG---RIIRVNLAKPQKVQQT--------------------SSKPVWASD 135
             Y  ++ +L+       + N+++ Q   +                     S K   A D
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 136 T---------------WLQKHAGETLDPENQIDPAEKLAASIDPKTKKNPQVYMDIKI-- 178
                           WL  +      PE  ++  +KL   IDP          +IK+  
Sbjct: 170 VCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 179 --GKQEVGRITIQLRYD---LV------PRTAE--NFRC---LCTHEKGFGYQGSSFHRI 222
              + E+ R+     Y+   LV       +     N  C   L T  K      S+    
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKH----TGPGVLSM 266
                      T       KS+     +     L      T P  LS+
Sbjct: 288 HISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 24/77 (31%)

Query: 70  LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------ 105
           +  L+    ++ L   F  +G L ++  P+D  T+K                        
Sbjct: 13  VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72

Query: 106 HQLFGRIIRVNLAKPQK 122
               GR++ V  +  +K
Sbjct: 73  QVFQGRMLHVLPSTIKK 89

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 27/93 (29%)

Query: 65  SRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFG------------ 110
             F+ +    + +++ D  + + F  FG +    +  D  T KH+ +G            
Sbjct: 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182

Query: 111 ------------RIIRVNLA-KPQKVQQTSSKP 130
                       + +RV  A  P     T + P
Sbjct: 183 AVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 215

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 24/88 (27%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQ----------------------- 107
           G +  E+ +  +  AF PFG +  I M  D  T KH+                       
Sbjct: 34  GSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV 93

Query: 108 -LFGRIIRVNLAKPQKVQQTSSKPVWAS 134
            L GR I+V         Q     +   
Sbjct: 94  MLGGRNIKVGRPSNIGQAQPIIDQLAEE 121

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Length = 101

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 18/69 (26%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD-------YETE-----------KHQLFGRI 112
           G +     +  L   F  FG ++D +   +       Y+T                 GR 
Sbjct: 33  GNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92

Query: 113 IRVNLAKPQ 121
           +R    K +
Sbjct: 93  LRTGWGKER 101

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 94

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 24/72 (33%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
             L   + +  L   F  +G +V + +  D +T K                         
Sbjct: 22  SNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81

Query: 107 QLFGRIIRVNLA 118
           QLFGR+I+ ++A
Sbjct: 82  QLFGRVIKASIA 93

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 22/81 (27%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYET----------------------EKHQL 108
           GGL  +  +  L   F  +G + D+++  D  T                       +H L
Sbjct: 9   GGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHIL 68

Query: 109 FGRIIRVNLAKPQKVQQTSSK 129
            G++I    A P+  Q  + K
Sbjct: 69  DGKVIDPKRAIPRDEQDKTGK 89

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Length = 167

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 23/73 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
           GG+  +V  K     F  +G ++D Q+ LD +T +                         
Sbjct: 93  GGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFID 152

Query: 108 LFGRIIRVNLAKP 120
              R I +  A+P
Sbjct: 153 FKDRKIEIKRAEP 165

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 93

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 21/79 (26%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVD-----------IQMPLDYETE--------KHQLFGR 111
           G L+  V    L   F      +            +  P              K +L G+
Sbjct: 14  GNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73

Query: 112 IIRVNLAKPQKVQQTSSKP 130
           I+ V+ +  +K    SS P
Sbjct: 74  IMEVDYSVSKK--LRSSGP 90

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Length = 156

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
           G L+    ++ +   F   GD+  I M LD   +                          
Sbjct: 45  GNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 104

Query: 107 QLFGRIIRVNLAKPQK 122
           +L  RIIR +     K
Sbjct: 105 RLDDRIIRTDWDAGFK 120

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 24/74 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
           G L   VDD+ L  AF  F   +   +  D +T                           
Sbjct: 7   GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 66

Query: 107 QLFGRIIRVNLAKP 120
            L GR +R+N A  
Sbjct: 67  DLNGRPLRINWAAK 80

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 20/85 (23%)

Query: 58  TKHQSLKSRFSNL--GGLAEEVDDKVLNAAFIPFGDL--VDIQMPLDY------------ 101
           +  +   S    L    L     ++++   F          ++   DY            
Sbjct: 6   SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAV 65

Query: 102 ----ETEKHQLFGRIIRVNLAKPQK 122
                     L G  I V LAKP  
Sbjct: 66  EAMKALNGKVLDGSPIEVTLAKPVD 90

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Length = 198

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 24/74 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------------ 106
           GGL   ++D  +      FG L    +  D  T                           
Sbjct: 120 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 179

Query: 107 QLFGRIIRVNLAKP 120
           QL  + + V  A  
Sbjct: 180 QLGDKKLLVQRASV 193

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 24/99 (24%)

Query: 47  HRIIPDFVSFMTKHQSLKSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETE 104
           H            +   KS+   L    +     D  L   F  FG ++D+++  +    
Sbjct: 9   HHSSGLVPRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 68

Query: 105 K----------------------HQLFGRIIRVNLAKPQ 121
           K                        + GR I VN A  +
Sbjct: 69  KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Length = 96

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 24/83 (28%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------------ 106
           G +  +  ++ +       G +++++M  D +T +                         
Sbjct: 8   GSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67

Query: 107 QLFGRIIRVNLAKPQKVQQTSSK 129
           QL  R ++   +    +   S +
Sbjct: 68  QLGSRFLKCGYSSNSDISGVSLE 90

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Length = 108

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLF--------------------- 109
           G L   + + +L   F PFG +  IQ+ +D ET + + +                     
Sbjct: 32  GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91

Query: 110 ---GRIIRVNLAKPQK 122
              GR ++V     + 
Sbjct: 92  ELAGRPMKVGHVTERT 107

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Length = 89

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 17/72 (23%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD--------YETE---------KHQLFGRII 113
           G   E++  + L   F  +G++VD+ +P          +  +            + G  +
Sbjct: 17  GRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGISV 76

Query: 114 RVNLAKPQKVQQ 125
            ++ A+P+  + 
Sbjct: 77  HISNAEPKHNKL 88

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 22/80 (27%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYET----------------------EKHQL 108
            GL  +  ++ L   F  FG+++ +Q+  D +T                      ++H +
Sbjct: 21  LGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMI 80

Query: 109 FGRIIRVNLAKPQKVQQTSS 128
            GR     L   ++ Q +  
Sbjct: 81  DGRWCDCKLPNSKQSQDSGP 100

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 24/82 (29%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
           G L+ E+  + + AAF PFG + D ++  D  T K                         
Sbjct: 21  GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80

Query: 107 QLFGRIIRVNLAKPQKVQQTSS 128
            L GR IR N A  +     S+
Sbjct: 81  WLGGRQIRTNWATRKPPAPKST 102

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 23/71 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD------------YETEK-----------HQ 107
           G L   V +++L   F+  G L  + +  D            ++  +            +
Sbjct: 22  GNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIR 81

Query: 108 LFGRIIRVNLA 118
           L+GR I V+  
Sbjct: 82  LYGRPINVSGP 92

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Length = 87

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 24/74 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
           G L+ E+    + AAF PFG + D ++  D  T K                         
Sbjct: 12  GDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71

Query: 107 QLFGRIIRVNLAKP 120
            L GR IR N A  
Sbjct: 72  WLGGRQIRTNWATR 85

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 24/74 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------------ 106
             L + V +  L      +G++ ++++ L   T KH                        
Sbjct: 12  ARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT 71

Query: 107 QLFGRIIRVNLAKP 120
            + G II   L   
Sbjct: 72  SVMGNIIHAQLDIK 85

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 107

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 28/100 (28%)

Query: 58  TKHQSLKSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYE-TEKH-------- 106
           +     K   S +    +  + + + +   F  FG+L  +++P     T  H        
Sbjct: 6   SGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF 65

Query: 107 -----------------QLFGRIIRVNLAKPQKVQQTSSK 129
                             L+GR + +  A  +   Q+   
Sbjct: 66  ITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQSGPS 105

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Length = 172

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 24/72 (33%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
           GGL   ++D  +      FG L    +  D  T                           
Sbjct: 100 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 159

Query: 107 QLFGRIIRVNLA 118
           QL  + + V  A
Sbjct: 160 QLGDKKLLVQRA 171

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 11/94 (11%), Positives = 21/94 (22%), Gaps = 26/94 (27%)

Query: 62  SLKSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------- 106
            L+   + L    L   +  +       PFG L    +     T +              
Sbjct: 90  QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149

Query: 107 -----------QLFGRIIRVNLAKPQKVQQTSSK 129
                       L  R + V+     ++      
Sbjct: 150 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLH 183

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 24/91 (26%)

Query: 59  KHQSLKSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVD---------------IQMPLDY 101
             +  + +  NL    L + +DD+ L  AF PFG +                 +      
Sbjct: 7   GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPE 66

Query: 102 ETEK-------HQLFGRIIRVNLAKPQKVQQ 125
           E  K         +  + + V LA+ ++ +Q
Sbjct: 67  EATKAVTEMNGRIVATKPLYVALAQRKEERQ 97

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 88

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD--------YETE---------KHQLFGRII 113
           G    ++ +  L   F  +GD++D+ +P          +  +            + G  +
Sbjct: 11  GRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISV 70

Query: 114 RVNLAKPQKVQQTSS 128
            ++ A+P+    +  
Sbjct: 71  HISNAEPKHNSNSGP 85

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Length = 196

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 23/83 (27%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
           GG+ E+ ++  L   F  +G +  I++  D  + K                       H 
Sbjct: 110 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT 169

Query: 108 LFGRIIRVNLAKPQKVQQTSSKP 130
           + G    V  A  ++   ++S  
Sbjct: 170 VNGHNCEVRKALSKQEMASASSS 192

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Length = 109

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 23/78 (29%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYET-----------------------EKHQ 107
           GGL+ +   + L   F  FG++ +  +  D  T                        +H+
Sbjct: 31  GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHE 90

Query: 108 LFGRIIRVNLAKPQKVQQ 125
           L  + I   +A P++ Q 
Sbjct: 91  LDSKTIDPKVAFPRRAQP 108

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Length = 75

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFG 110
           GGL+ +  ++ +   F  FG++  I++P+D +T K + F 
Sbjct: 5   GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC 44

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 111

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 30/80 (37%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------------ 106
             L+ + +++ L      FGDL  +++ L  +TE                          
Sbjct: 21  RNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLE 80

Query: 107 ------QLFGRIIRVNLAKP 120
                 +L GR ++V+LA  
Sbjct: 81  AEGGGLKLDGRQLKVDLAVT 100

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Length = 75

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 23/71 (32%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
           GGL+     + +   F  FG + D  +  D  T +                       H+
Sbjct: 5   GGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHE 64

Query: 108 LFGRIIRVNLA 118
           +  +++    A
Sbjct: 65  INNKMVECKKA 75

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Length = 90

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 23/75 (30%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
           G L      + +   F  FG + ++++  D ET+K                         
Sbjct: 7   GNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTD 66

Query: 108 LFGRIIRVNLAKPQK 122
             GR IRV  A P+K
Sbjct: 67  FMGRTIRVTEANPKK 81

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 23/75 (30%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD------------YETEK-----------HQ 107
            GL      + L       G + D+++  +            YE E              
Sbjct: 23  SGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMT 82

Query: 108 LFGRIIRVNLAKPQK 122
           +   II+V ++    
Sbjct: 83  IKENIIKVAISNSGP 97

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 23/81 (28%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
           GGL      + L + F  +G++VD  +  D  T +                       H 
Sbjct: 22  GGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHT 81

Query: 108 LFGRIIRVNLAKPQKVQQTSS 128
           L GR I      P+ +Q +  
Sbjct: 82  LDGRNIDPKPCTPRGMQPSGP 102

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 99

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 18/68 (26%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD-------YETEKH-----------QLFGRI 112
           G L  ++ ++ +   F  +G   ++ +  D        ET               L G+ 
Sbjct: 21  GNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80

Query: 113 IRVNLAKP 120
           +RV  A  
Sbjct: 81  LRVRFACH 88

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 104

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 24/76 (31%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
           G +  E  ++ L   F   G +V  ++  D ET K                         
Sbjct: 14  GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 73

Query: 107 QLFGRIIRVNLAKPQK 122
           +  GR +RV+ A  +K
Sbjct: 74  EFSGRALRVDNAASEK 89

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 18/86 (20%)

Query: 55  SFMTKHQSLKSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDY---ETEKH--- 106
           S M   Q  +   + L       +V +  LN  F PFG + ++++   +   E E+    
Sbjct: 19  SHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESA 78

Query: 107 ----------QLFGRIIRVNLAKPQK 122
                         + + V  +K   
Sbjct: 79  AKAIEEVHGKSFANQPLEVVYSKLPA 104

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Length = 168

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 26/91 (28%)

Query: 65  SRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQ--------------- 107
           +  +NL    L +++ D+ L A F   G +   ++  DY+T                   
Sbjct: 1   ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQR 60

Query: 108 ---------LFGRIIRVNLAKPQKVQQTSSK 129
                    +  + ++V+ A+P       + 
Sbjct: 61  AIKVLNGITVRNKRLKVSYARPGGESIKDTN 91

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Length = 102

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 11/95 (11%), Positives = 35/95 (36%), Gaps = 26/95 (27%)

Query: 64  KSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD------------YETE----- 104
           K   + +  GG+   +D+  + + F  +G + ++++  D            +  +     
Sbjct: 6   KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQK 65

Query: 105 ----KHQLFGRIIRVNLAKPQKVQQT---SSKPVW 132
               +    G+ +++  A  ++   T     +P+ 
Sbjct: 66  IVESQINFHGKKLKLGPAIRKQNLSTYHVQPRPLI 100

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 116

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 23/82 (28%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
           GGL     D  L   F  FGD+ +  +  D +T K                         
Sbjct: 23  GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI 82

Query: 108 LFGRIIRVNLAKPQKVQQTSSK 129
           + GR   VNLA      ++   
Sbjct: 83  IDGRKANVNLAYLGAKPRSLQT 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	99.98
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	99.98
2b71_A	196	Cyclophilin-like protein; structural genomics, str	99.97
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.97
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	99.97
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	99.97
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	99.97
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	99.97
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	99.97
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	99.97
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	99.97
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	99.97
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	99.96
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	99.95

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=1.3e-40  Score=279.67  Aligned_cols=126  Identities=79%  Similarity=1.353  Sum_probs=118.3

Q ss_pred             CCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcc
Q psy10327        164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS  243 (289)
Q Consensus       164 ~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~  243 (289)
                      +....+++|||++++++|+.|+|+||||++.||+||+||++||+|++||+|+|+.||||+|+|||||||+..++|+++.+
T Consensus         6 ~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~s   85 (173)
T 2r99_A            6 KKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS   85 (173)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCB
T ss_pred             ccccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCc
Confidence            34567899999999999999999999999999999999999999888988999999999999999999998888999999


Q ss_pred             cCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        244 IYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       244 ~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +|+..|++|++.++|+++|+|||||++||+++||||||+.++||||
T Consensus        86 i~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LD  131 (173)
T 2r99_A           86 IYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLD  131 (173)
T ss_dssp             TTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             cCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccC
Confidence            9999999999999999999999999999999999999999999998

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=2.5e-40  Score=277.54  Aligned_cols=124  Identities=67%  Similarity=1.232  Sum_probs=117.8

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY  245 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~  245 (289)
                      ...+++|||||++++|+.|+|+||||++.||+||+||++||++++||+|+|+.||||+|+|||||||+..++|+++.++|
T Consensus         7 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~   86 (172)
T 2cmt_A            7 KRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIY   86 (172)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccC
Confidence            46689999999999999999999999999999999999999877888899999999999999999999888899999999


Q ss_pred             CCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        246 GNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 ~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +..|++|++.++|+++|+|||||++||+++|||||+++++||||
T Consensus        87 g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LD  130 (172)
T 2cmt_A           87 GRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLD  130 (172)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccC
Confidence            99999999999999999999999999999999999999999998

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=2.7e-40  Score=275.87  Aligned_cols=122  Identities=70%  Similarity=1.278  Sum_probs=117.6

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGN  247 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~  247 (289)
                      .+++||||+++++|+.|+|+||||++.||+||+||++||+|++||+|+|+.||||+|+|||||||+..++|+++.++|+.
T Consensus         2 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~   81 (165)
T 2z6w_A            2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS   81 (165)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCC
Confidence            47899999999999999999999999999999999999988799999999999999999999999987889999999999


Q ss_pred             CCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        248 KFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       248 ~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .|++|++.++|+++|+|||||.+||+++|||||+++++||||
T Consensus        82 ~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ld  123 (165)
T 2z6w_A           82 RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD  123 (165)
T ss_dssp             CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             cccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccC
Confidence            999999999999999999999999999999999999999998

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=5e-40  Score=275.41  Aligned_cols=123  Identities=59%  Similarity=0.963  Sum_probs=118.3

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY  245 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~  245 (289)
                      +..+++|||||++.+|+.|+|+||||++.||+||+||++||+|++||+|+|+.||||+|+|||||||+..++|+++.++|
T Consensus         8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~   87 (172)
T 2haq_A            8 PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIY   87 (172)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSS
T ss_pred             CCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCcccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999998778899999999


Q ss_pred             CCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        246 GNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 ~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |..|++|++.++|+ +|+|||||.+||+++||||||++++||||
T Consensus        88 g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LD  130 (172)
T 2haq_A           88 GEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLD  130 (172)
T ss_dssp             SSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccC
Confidence            99999999999999 99999999999999999999999999998

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=4.1e-40  Score=279.87  Aligned_cols=126  Identities=58%  Similarity=0.981  Sum_probs=119.9

Q ss_pred             CCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcc
Q psy10327        164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS  243 (289)
Q Consensus       164 ~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~  243 (289)
                      ..+..+++|||||++++|+.|+|+||||.+.||+||+||++||+|++||+|+|+.||||+|+|||||||+..++|+++.+
T Consensus        10 ~~p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~s   89 (188)
T 3ich_A           10 KGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS   89 (188)
T ss_dssp             CSCEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred             CCCCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCcc
Confidence            34567889999999999999999999999999999999999999888989999999999999999999977788999999


Q ss_pred             cCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        244 IYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       244 ~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +||..|++|++.++|+++|+|||||.+||+++||||||++++||||
T Consensus        90 i~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LD  135 (188)
T 3ich_A           90 IYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLD  135 (188)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             ccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccC
Confidence            9999999999999999999999999999999999999999999998

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=8.7e-40  Score=274.80  Aligned_cols=121  Identities=68%  Similarity=1.153  Sum_probs=116.2

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCC--------ccccCCceEEEecCcEEEeCCCCCCCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG--------FGYQGSSFHRIIPDFMCQGGDFTNHNGT  239 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g--------~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~  239 (289)
                      .+++||||+++++++.|+|+||||++.||+||+||++||++++|        | |+|+.||||+|+|||||||+..++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~G~   80 (173)
T 2igv_A            2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNFMIQGGDFTRGNGT   80 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccce-ECCCEEEEEECCCEEEcCCCCCCCCC
Confidence            47899999999999999999999999999999999999987667        5 99999999999999999999888899


Q ss_pred             CCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++.++|+..|++|++.++|+++|+|||||++||+++||||||+.++||||
T Consensus        81 gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LD  130 (173)
T 2igv_A           81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLD  130 (173)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             CCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccC
Confidence            99999999999999999999999999999999999999999999999998

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=1.2e-39  Score=271.85  Aligned_cols=122  Identities=60%  Similarity=1.006  Sum_probs=117.8

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGN  247 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~  247 (289)
                      .+|+|||||.+++|+.|+|+||||++.||+||+||++||+|++||+|+|+.||||+|+|||||||+..++++++.++|+.
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~   80 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGE   80 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCc
Confidence            37899999999999999999999999999999999999988799999999999999999999999877889999999999


Q ss_pred             CCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        248 KFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       248 ~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .+++|++.++|+++|+|||||.+|++++|||||+++++||||
T Consensus        81 ~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld  122 (164)
T 3pmp_A           81 KFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLD  122 (164)
T ss_dssp             CBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGT
T ss_pred             cccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhC
Confidence            999999999999999999999999999999999999999998

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.3e-39  Score=274.66  Aligned_cols=122  Identities=53%  Similarity=0.925  Sum_probs=115.6

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCC---------ccccCCceEEEecCcEEEeCCCCCCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG---------FGYQGSSFHRIIPDFMCQGGDFTNHN  237 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g---------~~Y~g~~f~Rv~~~f~iq~Gd~~~~~  237 (289)
                      ..+++|||||++++|+.|+|+||||++.||+||+||++||+++++         | |+|+.||||+|+|||||||+..++
T Consensus         4 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~   82 (177)
T 1a58_A            4 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGD   82 (177)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCCSSSS
T ss_pred             CCCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcce-eCCCEEEEEECCCEEEeCCccCCC
Confidence            357899999999999999999999999999999999999986432         6 999999999999999999998788


Q ss_pred             CCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        238 GTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       238 g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |+++.++||..|++|++.++|+++|+|||||++||+++||||||++++||||
T Consensus        83 g~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LD  134 (177)
T 1a58_A           83 GTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLN  134 (177)
T ss_dssp             SSCCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCCCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccC
Confidence            9999999999999999999999999999999999999999999999999998

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=2e-39  Score=273.87  Aligned_cols=122  Identities=51%  Similarity=0.871  Sum_probs=115.6

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhcc---------CCccccCCceEEEecCcEEEeCCCCCCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFMCQGGDFTNHN  237 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~---------~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~  237 (289)
                      ..+++|||||++.+|+.|+|+||||++.||+||+||++||+|+         .+| |+|+.||||+|+|||||||+..++
T Consensus         7 ~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~   85 (179)
T 2wfi_A            7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH-YKSCLFHRVVKDFMVQGGDFSEGN   85 (179)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCe-ECCCEEEEEECCCEEEcccccCCC
Confidence            3588999999999999999999999999999999999999765         456 999999999999999999998788


Q ss_pred             CCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        238 GTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       238 g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |+++.++||..|++|++.++|+++|+|||||.+||+++||||||++++||||
T Consensus        86 g~gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LD  137 (179)
T 2wfi_A           86 GRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLD  137 (179)
T ss_dssp             SSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCCCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccC
Confidence            9999999999999999999999999999999999999999999999999998

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=2e-39  Score=274.98  Aligned_cols=126  Identities=63%  Similarity=1.025  Sum_probs=116.9

Q ss_pred             CCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCcc-------ccCCceEEEecCcEEEeCCCCCC
Q psy10327        164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFMCQGGDFTNH  236 (289)
Q Consensus       164 ~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~-------Y~g~~f~Rv~~~f~iq~Gd~~~~  236 (289)
                      .....+++||||+++++|+.|+|+||||++.||+||+||++||++++||+       |+|+.||||+|+|||||||+..+
T Consensus        14 ~~~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~   93 (186)
T 2poy_A           14 LYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG   93 (186)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS
T ss_pred             cccCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCC
Confidence            45577899999999999999999999999999999999999998878875       99999999999999999999888


Q ss_pred             CCCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        237 NGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       237 ~g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +|+++.++|+..|++|++.++|+++|+|||||.+||+++||||||++++||||
T Consensus        94 ~G~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LD  146 (186)
T 2poy_A           94 DGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLD  146 (186)
T ss_dssp             SSSCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCCCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccC
Confidence            89999999999999999999999999999999999999999999999999998

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=3.3e-39  Score=273.56  Aligned_cols=128  Identities=70%  Similarity=1.192  Sum_probs=118.8

Q ss_pred             CCCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCC
Q psy10327        162 IDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGG  241 (289)
Q Consensus       162 ~~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~  241 (289)
                      +.++...+++||||+++++++.|+|+||||++.||+||+||++||+++.||+|+|+.||||+|+|||||||+..++++++
T Consensus        15 ~~~~~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg   94 (184)
T 3rdd_A           15 LYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG   94 (184)
T ss_dssp             ------CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCcccCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCC
Confidence            35566789999999999999999999999999999999999999998889899999999999999999999888889999


Q ss_pred             cccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        242 KSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       242 ~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .++|+..|++|++.++|+++|+|||||.+||+++|||||+++++||||
T Consensus        95 ~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LD  142 (184)
T 3rdd_A           95 KSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLD  142 (184)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             cccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhC
Confidence            999999999999999999999999999999999999999999999998

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.3e-39  Score=274.27  Aligned_cols=125  Identities=52%  Similarity=0.871  Sum_probs=115.3

Q ss_pred             CCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhcc---------CCccccCCceEEEecCcEEEeCCCC
Q psy10327        164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFMCQGGDFT  234 (289)
Q Consensus       164 ~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~---------~g~~Y~g~~f~Rv~~~f~iq~Gd~~  234 (289)
                      .....+++|||||++.+|++|+|+||||++.||+||+||++||+|+         .+| |+|+.||||+|+|||||||+.
T Consensus        14 ~~~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~-Y~g~~FhRVi~~fmiQgGd~~   92 (192)
T 2he9_A           14 LVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC-YKGSTFHRVVKNFMIQGGDFS   92 (192)
T ss_dssp             -----CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTT
T ss_pred             ccccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCe-ECCCEEEEEECCCEEEcCccc
Confidence            3557799999999999999999999999999999999999999764         456 999999999999999999998


Q ss_pred             CCCCCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        235 NHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       235 ~~~g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .++|+++.++||..|++|++.++|+++|+|||||.+||+++||||||+.++||||
T Consensus        93 ~~~G~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LD  147 (192)
T 2he9_A           93 EGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLD  147 (192)
T ss_dssp             TSSSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCCCCCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccC
Confidence            7889999999999999999999999999999999999999999999999999998

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=3.3e-39  Score=270.52  Aligned_cols=121  Identities=59%  Similarity=1.032  Sum_probs=115.2

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCcc-------ccCCceEEEecCcEEEeCCCCCCCCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFMCQGGDFTNHNGTG  240 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~-------Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~  240 (289)
                      .+++||||+++++++.|+|+||||++.||+||+||++||+++ ||+       |+|+.||||+|+|||||||+..++|++
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   80 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence            578999999999999999999999999999999999999754 664       999999999999999999998788999


Q ss_pred             CcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        241 GKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       241 ~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +.++|+..|++|++.++|+++|+|||||.+||+++||||||++++||||
T Consensus        81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ld  129 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLD  129 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccC
Confidence            9999999999999999999999999999999999999999999999998

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=4e-39  Score=273.64  Aligned_cols=124  Identities=59%  Similarity=1.010  Sum_probs=118.3

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY  245 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~  245 (289)
                      +..+++|||||+++++++|+|+||||++.||+||+||++||++++|++|+|+.||||+|+|||||||+..++++++.++|
T Consensus         9 p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~   88 (185)
T 4fru_A            9 PKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIY   88 (185)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCcccc
Confidence            45688999999999999999999999999999999999999887784499999999999999999999888999999999


Q ss_pred             CCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        246 GNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 ~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +..|++|++.++|+++|+|||||.+|++++|||||+++++||||
T Consensus        89 g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld  132 (185)
T 4fru_A           89 GERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLD  132 (185)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccC
Confidence            99999999999999999999999999999999999999999998

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.7e-38  Score=270.88  Aligned_cols=123  Identities=59%  Similarity=1.042  Sum_probs=118.2

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG  246 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~  246 (289)
                      ..+++|||||++++|+.|+|+||||++.||+||+||++||++++||+|+|+.||||+|+|||||||+..++++++.++|+
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g  104 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYG  104 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCC
Confidence            67899999999999999999999999999999999999998778888999999999999999999988888999999999


Q ss_pred             CCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        247 NKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       247 ~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ..|++|++.++|+++|+|||||.+|++++|||||+++++||||
T Consensus       105 ~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LD  147 (193)
T 3k2c_A          105 EKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLD  147 (193)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccC
Confidence            9999999999999999999999999999999999999999998

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=2.1e-38  Score=267.22  Aligned_cols=125  Identities=58%  Similarity=1.007  Sum_probs=116.5

Q ss_pred             CCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCC-----ccccCCceEEEecCcEEEeCCCCCCCCC
Q psy10327        165 KTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFMCQGGDFTNHNGT  239 (289)
Q Consensus       165 ~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g-----~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~  239 (289)
                      ....+++||||+++.+|+.|+|+||||++.||+||+||++||++..+     ++|+|+.||||+|+|||||||+..++|+
T Consensus         6 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   85 (177)
T 1mzw_A            6 SSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   85 (177)
T ss_dssp             CCCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             cCCCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCC
Confidence            34568999999999999999999999999999999999999965442     1399999999999999999999878899


Q ss_pred             CCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++.++||..|++|++.++|+++|+|||||.+||+++|||||+++++||||
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LD  135 (177)
T 1mzw_A           86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLD  135 (177)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccC
Confidence            99999999999999999999999999999999999999999999999998

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=9.7e-38  Score=271.72  Aligned_cols=123  Identities=55%  Similarity=0.963  Sum_probs=116.1

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCC------ccccCCceEEEecCcEEEeCCCCCCCCC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG------FGYQGSSFHRIIPDFMCQGGDFTNHNGT  239 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g------~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~  239 (289)
                      ...+++||||+++++|+.|+|+||||.+.||+||+||++||++.++      + |+|+.||||+|+|||||||+..++|+
T Consensus        56 ~~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~-Y~gt~FHRVi~~FmiQgGD~~~g~G~  134 (229)
T 1z81_A           56 NPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVG-YKNTIFHRVIKEFMIQGGDFINHNGS  134 (229)
T ss_dssp             STTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCS-STTEECCEEETTTEEEECCTTTSSSC
T ss_pred             CCCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCce-ECCCEEEEEeCCCEEEcCCCcCCCCC
Confidence            3458899999999999999999999999999999999999976543      5 99999999999999999999878899


Q ss_pred             CCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++.++||..|++|++.++|+++|+|||||.+||+++||||||+.++||||
T Consensus       135 Gg~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LD  184 (229)
T 1z81_A          135 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLD  184 (229)
T ss_dssp             CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGB
T ss_pred             CCCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccC
Confidence            99999999999999999999999999999999999999999999999998

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=1.8e-38  Score=266.34  Aligned_cols=119  Identities=60%  Similarity=0.996  Sum_probs=84.6

Q ss_pred             eEEEEEEEC--c---EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccC
Q psy10327        171 QVYMDIKIG--K---QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY  245 (289)
Q Consensus       171 ~v~~~i~v~--~---t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~  245 (289)
                      +|||||+++  +   |++|+|+||||++.||+||+||++||+|++|++|+++.||||+|+|||||||+..++|+++.++|
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~   83 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIY   83 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-------------
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccC
Confidence            899999998  4   77799999999999999999999999888888899999999999999999997667889999999


Q ss_pred             CCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        246 GNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 ~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |..|++|++.++|+++|+|||||.+||+++|||||+++++||||
T Consensus        84 g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LD  127 (172)
T 2c3b_A           84 GDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLD  127 (172)
T ss_dssp             ---------CHHHHHTCEEEEC---------CEEEECSCCTTCC
T ss_pred             CCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccC
Confidence            99999999999999999999999999999999999999999998

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=7.6e-37  Score=267.75  Aligned_cols=126  Identities=30%  Similarity=0.515  Sum_probs=112.0

Q ss_pred             CCCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhcc-----------C----C--ccccCCceEEEec
Q psy10327        162 IDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----------K----G--FGYQGSSFHRIIP  224 (289)
Q Consensus       162 ~~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~-----------~----g--~~Y~g~~f~Rv~~  224 (289)
                      ..|....+++|||+|++.+|+.|+|+||||.+.||+||+||++||+++           +    |  |+|+|+.||||+|
T Consensus         7 ~~p~~~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~   86 (234)
T 2ose_A            7 DLPNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLH   86 (234)
T ss_dssp             SCCCCCSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEET
T ss_pred             ccCcCCCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEEC
Confidence            357778899999999999999999999999999999999999999865           4    5  6799999999999


Q ss_pred             CcEEEeCCCCCCCCCCCcccCCCC-----CCCCcCCCCCCCCcEEEEec----CCCCCCCceEEEEcCC------CCCCC
Q psy10327        225 DFMCQGGDFTNHNGTGGKSIYGNK-----FEDENFILKHTGPGVLSMAN----SGPNTNGSQFFLCTTK------TEWNI  289 (289)
Q Consensus       225 ~f~iq~Gd~~~~~g~~~~~~~~~~-----~~~e~~~~~~~~~G~v~ma~----~~~~s~~sqFfI~l~~------~~~LD  289 (289)
                      +|||||||+..++|+++.++||..     |+  ++.++|+++|+|||||    ++||+++||||||+++      +||||
T Consensus        87 ~FmiQgGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LD  164 (234)
T 2ose_A           87 NNYIVSGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELD  164 (234)
T ss_dssp             TTEEEECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSC
T ss_pred             CCEEEcCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccC
Confidence            999999998778899999999987     66  5689999999999999    8999999999999999      99998

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=2e-36  Score=283.05  Aligned_cols=122  Identities=61%  Similarity=1.032  Sum_probs=115.8

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCc--------cccCCceEEEecCcEEEeCCCCCCCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPDFMCQGGDFTNHNGT  239 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~--------~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~  239 (289)
                      .+++||||+++++++.|+|+||||++.||+||+||++||++++|+        +|+|+.||||+|+|||||||+..++|+
T Consensus        14 ~~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~   93 (370)
T 1ihg_A           14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGT   93 (370)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCC
Confidence            489999999999999999999999999999999999999875432        399999999999999999999988999


Q ss_pred             CCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |+.++||..|++|++.++|+++|+|||||.+|||++||||||++++||||
T Consensus        94 g~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld  143 (370)
T 1ihg_A           94 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLD  143 (370)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccC
Confidence            99999999999999999999999999999999999999999999999998

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=5.5e-37  Score=255.87  Aligned_cols=124  Identities=34%  Similarity=0.600  Sum_probs=111.9

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccc---cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~~~~e~   77 (289)
                      |||++++|++|+|+||||.+.||+||+||++||+|++||+|+|+.||||+|+|||||||+..   .++.++|+..|++|+
T Consensus         8 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~   87 (165)
T 2z6w_A            8 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDEN   87 (165)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCcc
Confidence            69999999999999999999999999999999988899999999999999999999999853   357899999999985


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccc
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQ  124 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~  124 (289)
                            .+|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+..
T Consensus        88 ~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~  145 (165)
T 2z6w_A           88 FTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESF  145 (165)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHT
T ss_pred             cccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhC
Confidence                  269999984   35666 67778899999999999999998 9999999874

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=4.8e-37  Score=257.30  Aligned_cols=126  Identities=30%  Similarity=0.437  Sum_probs=113.2

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccc---cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~~~~e~   77 (289)
                      |||++++|++|+|+||||.+.||+||+||++||+|++||+|+|+.||||+|+|||||||+..   .++.++|+..|++|+
T Consensus        16 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~   95 (172)
T 2haq_A           16 FDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADEN   95 (172)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCBCCCC
T ss_pred             EEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcccCcC
Confidence            79999999999999999999999999999999999999999999999999999999999542   347899999999985


Q ss_pred             -----chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -----DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -----~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                           .+|+++||.   .++|| |||++.+.|+||++|+|||||++ ||||++|+..+.
T Consensus        96 ~~l~h~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t  154 (172)
T 2haq_A           96 LNVKHFVGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKT  154 (172)
T ss_dssp             CCSCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             CCcccCceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCc
Confidence                 379999984   35676 67778899999999999999998 999999987554

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=9.1e-37  Score=255.92  Aligned_cols=126  Identities=37%  Similarity=0.587  Sum_probs=112.6

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccc---cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~~~~e~   77 (289)
                      |||++++|++|+|+||||.+.||+||+||++||++++||+|+|+.||||+|+|||||||+..   .++.++|+..|++|+
T Consensus        15 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~   94 (172)
T 2cmt_A           15 FDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDEN   94 (172)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCcccccc
Confidence            68999999999999999999999999999999988889889999999999999999999863   357899999999986


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                            .+|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+....
T Consensus        95 ~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~  154 (172)
T 2cmt_A           95 FQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS  154 (172)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCC
T ss_pred             cCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCC
Confidence                  369999984   35676 67778899999999999999998 999999987443

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=1.1e-36  Score=255.71  Aligned_cols=125  Identities=40%  Similarity=0.633  Sum_probs=112.0

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccc---cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~~~~e~   77 (289)
                      |||++++|++|+|+||||.+.||+||+||++||+|++||+|+|+.||||+|+|||||||+..   .++.++|+..|++|+
T Consensus        16 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~   95 (173)
T 2r99_A           16 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN   95 (173)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCcccCcc
Confidence            68999999999999999999999999999999999899889999999999999999999863   347899999999986


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                            .+|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+...
T Consensus        96 ~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~  154 (173)
T 2r99_A           96 FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG  154 (173)
T ss_dssp             CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             cCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCC
Confidence                  269999984   35666 67778899999999999999998 99999998743

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=4.6e-36  Score=250.37  Aligned_cols=114  Identities=51%  Similarity=0.908  Sum_probs=107.2

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG  246 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~  246 (289)
                      ..+++|.|+     |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++++++.++|+
T Consensus         9 ~~~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g   79 (166)
T 2x7k_A            9 WQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYG   79 (166)
T ss_dssp             CCCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTTEEEECCTT-SSSSCCCCTTS
T ss_pred             cCCCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHH--hcCC-CCCCEEEEEECCCEEEcCCCC-CCCCCCCccCC
Confidence            456788888     89999999999999999999999999  7899 999999999999999999987 67888999999


Q ss_pred             CCCCCCc-CCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        247 NKFEDEN-FILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       247 ~~~~~e~-~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ..|++|. ..++|+++|+|||||++||+++|||||+++++||||
T Consensus        80 ~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ld  123 (166)
T 2x7k_A           80 KQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD  123 (166)
T ss_dssp             SCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGT
T ss_pred             CccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccC
Confidence            9999998 589999999999999999999999999999999998

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=2.3e-36  Score=252.01  Aligned_cols=126  Identities=29%  Similarity=0.466  Sum_probs=112.5

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccc---cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~~~~e~   77 (289)
                      |||++++|++|+|+||||.+.||+||+||++||+|++||+|+|+.||||+|+||+||||+..   .++.++|+..+++|.
T Consensus         7 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE~   86 (164)
T 3pmp_A            7 FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADEN   86 (164)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCccccccc
Confidence            79999999999999999999999999999999988899999999999999999999999543   357899999999986


Q ss_pred             c------hhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 D------DKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ~------~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .      +|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+....
T Consensus        87 ~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~  146 (164)
T 3pmp_A           87 FQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGS  146 (164)
T ss_dssp             CCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC
T ss_pred             cccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCC
Confidence            2      59999984   35666 77777899999999999999998 999999987443

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=1.8e-36  Score=254.63  Aligned_cols=125  Identities=34%  Similarity=0.552  Sum_probs=110.8

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcc-------cCCCeeeeecccceeccccccc---cCCcccCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFVSFMTKHQS---LKSRFSNL   70 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~-------Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~   70 (289)
                      |||+++++++|+|+||||.+.||+||+||++||++++|++       |+|+.||||+|+|||||||+..   .++.++|+
T Consensus         8 ~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg   87 (173)
T 2igv_A            8 FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYG   87 (173)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred             EEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCC
Confidence            7999999999999999999999999999999998877732       9999999999999999999863   35789999


Q ss_pred             CCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         71 GGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        71 ~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                      ..|++|+      .+|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+...
T Consensus        88 ~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~  153 (173)
T 2igv_A           88 EKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNG  153 (173)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             CcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCC
Confidence            9999986      269999984   35677 67778899999999999999998 99999998643

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2e-36  Score=257.18  Aligned_cols=126  Identities=28%  Similarity=0.461  Sum_probs=112.8

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccc-c--cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQ-S--LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~-~--~~g~~~~~~~~~~e~   77 (289)
                      |||++++|++|+|+||||.+.||+||+||++||+|++||+|+|+.||||+|+|||||||+. +  .++.++|+..|++|+
T Consensus        20 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~   99 (188)
T 3ich_A           20 FDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDEN   99 (188)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCcccccc
Confidence            6899999999999999999999999999999999999999999999999999999999954 2  357899999999985


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                            .+|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+....
T Consensus       100 ~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~  159 (188)
T 3ich_A          100 FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKT  159 (188)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCc
Confidence                  379999984   35676 67778899999999999999998 999999987554

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=2.6e-36  Score=254.49  Aligned_cols=125  Identities=27%  Similarity=0.426  Sum_probs=110.7

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCC---------cccCCCeeeeecccceeccccccc---cCCccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG---------FGYQGSSFHRIIPDFVSFMTKHQS---LKSRFS   68 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g---------~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~   68 (289)
                      |||+|+++++|+|+||||.+.||+||+||++||++++|         | |+|+.||||+|+|||||||++.   .++.++
T Consensus        11 ~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si   89 (177)
T 1a58_A           11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDGTGGESI   89 (177)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCCSSSSSSCCCCT
T ss_pred             EEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcce-eCCCEEEEEECCCEEEeCCccCCCCCCCCcc
Confidence            79999999999999999999999999999999987543         6 9999999999999999999862   347899


Q ss_pred             CCCCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         69 NLGGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        69 ~~~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      |+..|++|+      .+|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus        90 ~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~  158 (177)
T 1a58_A           90 YGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKT  158 (177)
T ss_dssp             TSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCC
Confidence            999999986      379999984   35676 67778899999999999999998 999999987554

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=2.9e-36  Score=254.49  Aligned_cols=125  Identities=30%  Similarity=0.463  Sum_probs=110.7

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCC---------CcccCCCeeeeecccceeccccccc---cCCccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK---------GFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFS   68 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~---------g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~   68 (289)
                      |||+|.+|++|+|+||||.+.||+||+||++||+|++         +| |+|+.||||+|+|||||||++.   .++.++
T Consensus        14 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si   92 (179)
T 2wfi_A           14 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH-YKSCLFHRVVKDFMVQGGDFSEGNGRGGESI   92 (179)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTSSSSCCCCT
T ss_pred             EEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCe-ECCCEEEEEECCCEEEcccccCCCCCCCCcc
Confidence            7999999999999999999999999999999998764         46 9999999999999999999863   347899


Q ss_pred             CCCCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         69 NLGGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        69 ~~~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      |+..|++|+      .+|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus        93 ~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t  161 (179)
T 2wfi_A           93 YGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKT  161 (179)
T ss_dssp             TSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCB
T ss_pred             cCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCC
Confidence            999999985      368999984   35676 67778899999999999999998 999999987554

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=2.7e-36  Score=255.80  Aligned_cols=126  Identities=36%  Similarity=0.531  Sum_probs=111.6

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcc-------cCCCeeeeecccceeccccccc---cCCcccCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFVSFMTKHQS---LKSRFSNL   70 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~-------Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~   70 (289)
                      |||+++++++|+|+||||.+.||+||+||++||+|++||+       |+|+.||||+|+|||||||+..   .++.++|+
T Consensus        24 ~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~si~g  103 (186)
T 2poy_A           24 FDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYG  103 (186)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCCTTC
T ss_pred             EEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCccCC
Confidence            6999999999999999999999999999999999888885       9999999999999999999863   35789999


Q ss_pred             CCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         71 GGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        71 ~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      ..|++|+      .+|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+....
T Consensus       104 ~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  170 (186)
T 2poy_A          104 SKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS  170 (186)
T ss_dssp             -CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC
T ss_pred             CcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC
Confidence            9999986      269999994   35676 67778899999999999999998 999999987443

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=1.5e-35  Score=245.92  Aligned_cols=112  Identities=46%  Similarity=0.760  Sum_probs=104.4

Q ss_pred             CCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCC
Q psy10327        169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNK  248 (289)
Q Consensus       169 ~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~  248 (289)
                      .+.|.|+     |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++|+++.++||..
T Consensus         5 ~~~v~~~-----T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~   75 (160)
T 2fu0_A            5 PKSAIIY-----TTMGDIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNE   75 (160)
T ss_dssp             CCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSC
T ss_pred             CCEEEEE-----ecCccEEEEEeCCCChHHHHHHHHHh--ccCc-cCCCEEEEEECCCEEEeCCcC-CCCCCCCcccCCC
Confidence            3455665     99999999999999999999999999  7899 999999999999999999986 6788999999999


Q ss_pred             CCCCcC-CCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        249 FEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       249 ~~~e~~-~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |++|.. .++|+++|+|||||.+||+++|||||++.++||||
T Consensus        76 ~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ld  117 (160)
T 2fu0_A           76 FEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLD  117 (160)
T ss_dssp             BCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             ccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccC
Confidence            999987 69999999999999999999999999999999998

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-36  Score=254.70  Aligned_cols=125  Identities=30%  Similarity=0.443  Sum_probs=110.8

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCC---------CcccCCCeeeeecccceeccccccc---cCCccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK---------GFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFS   68 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~---------g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~   68 (289)
                      |||+|.+|++|+|+||||.+.||+||+||++||+|++         +| |+|+.||||+|+|||||||+..   .++.++
T Consensus        24 ~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~-Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~si  102 (192)
T 2he9_A           24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC-YKGSTFHRVVKNFMIQGGDFSEGNGKGGESI  102 (192)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTSSSSCCCCT
T ss_pred             EEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCe-ECCCEEEEEECCCEEEcCcccCCCCCCCCcc
Confidence            6999999999999999999999999999999998754         46 9999999999999999999863   357899


Q ss_pred             CCCCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         69 NLGGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        69 ~~~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      |+..|++|+      .+|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus       103 yg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  171 (192)
T 2he9_A          103 YGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKT  171 (192)
T ss_dssp             TSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCc
Confidence            999999986      368999984   45676 67778899999999999999998 999999987544

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=4.6e-36  Score=251.41  Aligned_cols=125  Identities=31%  Similarity=0.497  Sum_probs=110.4

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcc-------cCCCeeeeecccceeccccccc---cCCcccCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDFVSFMTKHQS---LKSRFSNL   70 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~-------Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~   70 (289)
                      |||+|+++++|+|+||||.+.||+||+||++||+++ ||+       |+|+.||||+|+|||||||+..   .++.++|+
T Consensus         8 ~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g   86 (170)
T 1qng_A            8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYG   86 (170)
T ss_dssp             EEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred             EEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCccccC
Confidence            799999999999999999999999999999999765 664       9999999999999999999853   34789999


Q ss_pred             CCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         71 GGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        71 ~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      +.|++|+      .+|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+....
T Consensus        87 ~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t  153 (170)
T 1qng_A           87 RSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA  153 (170)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC
T ss_pred             CcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC
Confidence            9999986      379999994   35676 67777899999999999999998 999999987544

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=4.2e-35  Score=246.50  Aligned_cols=111  Identities=46%  Similarity=0.739  Sum_probs=103.7

Q ss_pred             CeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCC
Q psy10327        170 PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKF  249 (289)
Q Consensus       170 ~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~  249 (289)
                      ..|.++     |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++|+++.++||..|
T Consensus        22 ~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~   92 (176)
T 2a2n_A           22 DSAIIH-----TSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEF   92 (176)
T ss_dssp             SEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCB
T ss_pred             CEEEEE-----ecCccEEEEEeCCCChHHHHHHHHHh--hcCc-cCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCcc
Confidence            345555     99999999999999999999999999  7899 999999999999999999986 67889999999999


Q ss_pred             CCCcC-CCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        250 EDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       250 ~~e~~-~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|.. .++|+++|+|||||.+||+++|||||+++++||||
T Consensus        93 ~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LD  133 (176)
T 2a2n_A           93 EDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLD  133 (176)
T ss_dssp             CCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             ccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccC
Confidence            99987 69999999999999999999999999999999998

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=249.00  Aligned_cols=115  Identities=38%  Similarity=0.706  Sum_probs=107.1

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY  245 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~  245 (289)
                      +..+++|+|+     |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++|+++.++|
T Consensus        21 ~~~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~   91 (185)
T 2hq6_A           21 PPTNGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPT-GTGSGGESIY   91 (185)
T ss_dssp             CCCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEECCTT-SSSSCCCCTT
T ss_pred             CCCCCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEECCCEEEcCCCC-CCCCCCCccc
Confidence            3456788888     88999999999999999999999999  7899 999999999999999999986 6788899999


Q ss_pred             CCCCCCCcC-CCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        246 GNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 ~~~~~~e~~-~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      |..|++|.. .++|+++|+|||||++||+++|||||+++++||||
T Consensus        92 g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LD  136 (185)
T 2hq6_A           92 GAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELN  136 (185)
T ss_dssp             SSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccC
Confidence            999999985 68999999999999999999999999999999998

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=5.9e-35  Score=250.05  Aligned_cols=114  Identities=51%  Similarity=0.908  Sum_probs=107.2

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG  246 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~  246 (289)
                      ..+++|.|+     |++|+|+||||++.||+||+||++||  +.|| |+++.||||+|+|||||||+. ++++++.++|+
T Consensus         9 ~~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~F~iQgGd~~-~~g~gg~si~g   79 (203)
T 2k7n_A            9 WQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYG   79 (203)
T ss_dssp             CCCSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHH--HHTC-GGGCEEEEEETTTEEEEECSS-SSSSCCCTTSC
T ss_pred             cCCCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHH--hcCc-cCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCC
Confidence            466788888     89999999999999999999999999  7899 999999999999999999987 67888999999


Q ss_pred             CCCCCCc-CCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        247 NKFEDEN-FILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       247 ~~~~~e~-~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ..|++|. ..++|+++|+|||||.+||+++|||||++.++||||
T Consensus        80 ~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LD  123 (203)
T 2k7n_A           80 KQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD  123 (203)
T ss_dssp             SCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSST
T ss_pred             CcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccC
Confidence            9999998 589999999999999999999999999999999998

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=1.2e-35  Score=252.18  Aligned_cols=126  Identities=28%  Similarity=0.470  Sum_probs=111.8

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccc---cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~~~~e~   77 (289)
                      |||+++++++|+|+||||.+.||+||+||++||++++|++|+|+.||||+|+|||||||+..   .++.++|+..|++|+
T Consensus        17 ~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~de~   96 (185)
T 4fru_A           17 FDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDEN   96 (185)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCccCccc
Confidence            69999999999999999999999999999999998888449999999999999999999863   357899999999986


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                            .+|+++|+.   .++|| |||++.+.||||++|+|||||++ ||||++|+....
T Consensus        97 ~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t  156 (185)
T 4fru_A           97 FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKT  156 (185)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCC
Confidence                  279999984   35666 67777899999999999999998 999999987544

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=4.1e-35  Score=243.68  Aligned_cols=105  Identities=51%  Similarity=0.813  Sum_probs=100.3

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcC-CCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~-~~~~~  259 (289)
                      |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++++++.++|+..+++|.. .++|+
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~   82 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKHN   82 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCTTCCSC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHh--hhcc-cCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccccCcCcCcC
Confidence            99999999999999999999999999  7789 999999999999999999987 6788899999999999975 78999


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+|||||++||+++|||||+++++||||
T Consensus        83 ~~G~lsma~~gp~s~~SQFfI~~~~~~~Ld  112 (161)
T 2ok3_A           83 VRGVVSMANNGPNTNGSQFFITYGKQPHLD  112 (161)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCeEEEEecCCCCCcceEEEEEcCCCCccC
Confidence            999999999999999999999999999998

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=7.8e-35  Score=248.41  Aligned_cols=114  Identities=46%  Similarity=0.789  Sum_probs=105.1

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG  246 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~  246 (289)
                      +....|.|+     |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++|+++.++||
T Consensus        17 ~~~~~v~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g   87 (197)
T 1zkc_A           17 RGSGYVRLH-----TNKGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWG   87 (197)
T ss_dssp             CSCEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEECCTT-SSSSCCCBTTB
T ss_pred             CCCcEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCC
Confidence            334455555     99999999999999999999999999  7899 999999999999999999987 67888999999


Q ss_pred             CCCCCC-cCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        247 NKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       247 ~~~~~e-~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ..|++| ...++|+++|+|||||++||+++|||||+++++||||
T Consensus        88 ~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LD  131 (197)
T 1zkc_A           88 KPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLD  131 (197)
T ss_dssp             SCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccC
Confidence            999999 4789999999999999999999999999999999998

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=5.2e-35  Score=249.51  Aligned_cols=114  Identities=47%  Similarity=0.791  Sum_probs=106.7

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG  246 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~  246 (289)
                      ..+++|.|+     |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++|+++.++||
T Consensus        36 ~~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRVi~~f~iQgGd~~-~~g~gg~si~g  106 (196)
T 2b71_A           36 TERGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYG  106 (196)
T ss_dssp             HHSCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETT-SSSSCCCBTTB
T ss_pred             CCCcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCC
Confidence            346788888     89999999999999999999999999  7899 999999999999999999987 67889999999


Q ss_pred             CCCCCCc-CCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        247 NKFEDEN-FILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       247 ~~~~~e~-~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ..|++|. ..++|+++|+||||+.+||+++|||||+++++||||
T Consensus       107 ~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LD  150 (196)
T 2b71_A          107 EYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLD  150 (196)
T ss_dssp             SCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             CcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccC
Confidence            9999995 578999999999999999999999999999999998

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=249.69  Aligned_cols=125  Identities=32%  Similarity=0.504  Sum_probs=112.0

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccc---cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~~~~e~   77 (289)
                      ||++++++++|+|+||||.+.||+||+||++||+++.|++|+|+.||||+|+|||||||+..   .++.++|+..|++|+
T Consensus        27 ~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~de~  106 (184)
T 3rdd_A           27 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDEN  106 (184)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCcccCcc
Confidence            68999999999999999999999999999999999999999999999999999999999653   357889999999885


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                            .+|+++|+.   .++|| |||++.+.|+||++|+|||||++ ||||++|+...
T Consensus       107 ~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~  165 (184)
T 3rdd_A          107 FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG  165 (184)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             cccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcC
Confidence                  379999984   35666 77778899999999999999998 99999997643

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=3.1e-35  Score=250.81  Aligned_cols=126  Identities=30%  Similarity=0.504  Sum_probs=112.3

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccc---cCCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~~~~e~   77 (289)
                      |||++++|++|+|+||||.+.||+||+||++||+|++|++|+|+.||||+|+|||||||+..   .++.++|+..|++|+
T Consensus        32 ~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~  111 (193)
T 3k2c_A           32 FDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDEN  111 (193)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCCC
T ss_pred             EEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCcccccc
Confidence            69999999999999999999999999999999988899999999999999999999999653   347899999999985


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                            .+|+++|+.   .++|| |||++.+.|+||++|+|||||++ ||||++|+....
T Consensus       112 ~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  171 (193)
T 3k2c_A          112 FELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGS  171 (193)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC
T ss_pred             cccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCC
Confidence                  379999984   35666 77778899999999999999998 999999976443

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=7.1e-35  Score=246.99  Aligned_cols=105  Identities=42%  Similarity=0.692  Sum_probs=100.8

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCc-CCCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~-~~~~~~  259 (289)
                      |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++|+++.++||..|++|. ..++|+
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~   98 (185)
T 2poe_A           23 TNYGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYD   98 (185)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCCCCTTSCCC
T ss_pred             ecCccEEEEEeCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCcccccccCCCccC
Confidence            99999999999999999999999999  7899 999999999999999999987 678889999999999997 789999


Q ss_pred             CCcEEEEecCC----CCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSG----PNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~----~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+|||||.+    |+|++||||||++++||||
T Consensus        99 ~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LD  132 (185)
T 2poe_A           99 RRGILSMASKGASKKPNTNGSQFFITYSSLPQLN  132 (185)
T ss_dssp             STTEEEECCSCC-CCCSCBCSCEEEESSCCGGGT
T ss_pred             CCeEEEEecCCCCCCCCCccceEEEECCCCCccC
Confidence            99999999999    9999999999999999998

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=3.3e-35  Score=247.63  Aligned_cols=126  Identities=37%  Similarity=0.496  Sum_probs=110.1

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCc-----ccCCCeeeeecccceeccccccc---cCCcccCCCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-----GYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGG   72 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~-----~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~   72 (289)
                      ||+++++|+.|+|+||||.+.||+||+||++||+++.|.     +|+|+.||||+|+|||||||+..   .++.++|+..
T Consensus        15 ~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~   94 (177)
T 1mzw_A           15 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGP   94 (177)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSC
T ss_pred             EEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCc
Confidence            689999999999999999999999999999999665532     39999999999999999999863   3578999999


Q ss_pred             Ccccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         73 LAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        73 ~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      |++|+      .+|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus        95 f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t  159 (177)
T 1mzw_A           95 FADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPT  159 (177)
T ss_dssp             BCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             ccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCc
Confidence            99986      379999994   35676 67778899999999999999998 999999987544

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=2.1e-34  Score=245.00  Aligned_cols=112  Identities=43%  Similarity=0.641  Sum_probs=99.9

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhcc-------------CCccccCCceEEEecCcEEEeCCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------------KGFGYQGSSFHRIIPDFMCQGGDFT  234 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~-------------~g~~Y~g~~f~Rv~~~f~iq~Gd~~  234 (289)
                      .+.+|.|+     |+.|+|+||||++.||+||+||++||+|+             .+| |+|+.||||+|+|||||||+.
T Consensus        22 ~~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~-Y~g~~FhRVi~~fmiQgGd~~   95 (191)
T 1w74_A           22 ATATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPT   95 (191)
T ss_dssp             CSEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTT
T ss_pred             CCeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCc-cCCCEEEEEeCCCEEecCCCC
Confidence            34566666     99999999999999999999999999764             357 999999999999999999985


Q ss_pred             CCCCCCCcccCCCCCCCC-cCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        235 NHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       235 ~~~g~~~~~~~~~~~~~e-~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                       ++|+++   +|..|++| ++.++|+++|+|||||.+||+++||||||+.++||||
T Consensus        96 -g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LD  147 (191)
T 1w74_A           96 -GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN  147 (191)
T ss_dssp             -SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             -CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccC
Confidence             466665   57889999 4689999999999999999999999999999999998

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=3.7e-34  Score=239.14  Aligned_cols=112  Identities=29%  Similarity=0.509  Sum_probs=99.7

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG  246 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~  246 (289)
                      +.+++|+|+     |+.|+|+||||++.||+||+||++||  ++|| |+|+.||||+|+|||||||+....   +.+.++
T Consensus         2 ~~~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~---~~~~~g   70 (166)
T 1v9t_A            2 KGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQM---QQKKPN   70 (166)
T ss_dssp             CCSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEESSBCTTC---CBCCCC
T ss_pred             CCCeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCcEEEcCCcCcCC---CCCCCC
Confidence            567889998     89999999999999999999999999  7899 999999999999999999986533   233457


Q ss_pred             CCCCCCcCCCCCCCCcEEEEecC-CCCCCCceEEEEcCCCCCCC
Q psy10327        247 NKFEDENFILKHTGPGVLSMANS-GPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       247 ~~~~~e~~~~~~~~~G~v~ma~~-~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .+|++|.....|+++|+|||||+ +|||++|||||++.++||||
T Consensus        71 ~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld  114 (166)
T 1v9t_A           71 PPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLD  114 (166)
T ss_dssp             CCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGS
T ss_pred             CcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccC
Confidence            78999987656677999999997 59999999999999999998

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=3.6e-34  Score=245.99  Aligned_cols=112  Identities=36%  Similarity=0.549  Sum_probs=97.9

Q ss_pred             CCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeC-----CCCCCCCCCCcc
Q psy10327        169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGG-----DFTNHNGTGGKS  243 (289)
Q Consensus       169 ~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~G-----d~~~~~g~~~~~  243 (289)
                      +.+|.|+     |+.|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+||||||     |+. ++|+++.+
T Consensus         6 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g~gg~s   76 (201)
T 3bo7_A            6 KGYLRIV-----TTQGSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPS-KKKEVQQS   76 (201)
T ss_dssp             CEEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEECCGGGCCC--------CC
T ss_pred             ceEEEEE-----eCCCCEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCCEEEEeeCCCEEEcCcccccCCC-CCCCCCcc
Confidence            4455555     99999999999999999999999999  7899 999999999999999999     986 67888999


Q ss_pred             cC-------CCCCCCCc-CCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        244 IY-------GNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       244 ~~-------~~~~~~e~-~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +|       +..|++|. ..++|+++|+|||||++||+++||||||++++||||
T Consensus        77 i~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LD  130 (201)
T 3bo7_A           77 PRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLN  130 (201)
T ss_dssp             SSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             ccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccC
Confidence            99       88999994 789999999999999999999999999999999998

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=7.5e-34  Score=248.27  Aligned_cols=114  Identities=33%  Similarity=0.605  Sum_probs=104.4

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccC-
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY-  245 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~-  245 (289)
                      ..+.+|.|+     |++|+|+||||++.||+||+||++||  +.|| |+|+.||||+|+|||||||+. ++|+++.++| 
T Consensus        19 ~~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydgt~FhRVi~~FmiQgGdp~-~~G~Gg~si~~   89 (232)
T 3bkp_A           19 STRGKVVLH-----TSLGDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPT-GTGRGGADTTF   89 (232)
T ss_dssp             SCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHH--HHTT-TTTCBEEEEETTTEEEECCTT-SSSSCCCCCTT
T ss_pred             CCCCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEeCCCEEEcCCCC-CCCCCCCcccc
Confidence            446678888     88999999999999999999999999  6789 999999999999999999987 6788999999 


Q ss_pred             -CCCCCCCcC-CCCCCCCcEEEEecCCC--------------CCCCceEEEEcCCCCCCC
Q psy10327        246 -GNKFEDENF-ILKHTGPGVLSMANSGP--------------NTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 -~~~~~~e~~-~~~~~~~G~v~ma~~~~--------------~s~~sqFfI~l~~~~~LD  289 (289)
                       |..|++|.. .++|+.+|+|||||.++              ++++||||||++++||||
T Consensus        90 ~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LD  149 (232)
T 3bkp_A           90 DGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLN  149 (232)
T ss_dssp             TTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGT
T ss_pred             CCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccC
Confidence             889999975 78999999999999996              699999999999999998

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-34  Score=243.43  Aligned_cols=126  Identities=29%  Similarity=0.427  Sum_probs=92.9

Q ss_pred             CceeeC--c---eeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccc-c--cCCcccCCCC
Q psy10327          1 MDIKIG--K---QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQ-S--LKSRFSNLGG   72 (289)
Q Consensus         1 ~di~i~--~---t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~-~--~~g~~~~~~~   72 (289)
                      |||+++  +   |++|+|+||||.+.||+||+||++||+|++|++|+|+.||||+|+|||||||+. +  .++.++|+..
T Consensus         7 ~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~   86 (172)
T 2c3b_A            7 FDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDK   86 (172)
T ss_dssp             EEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------------
T ss_pred             EEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCc
Confidence            689998  6   555999999999999999999999998889989999999999999999999943 3  3478999999


Q ss_pred             Ccccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE---eccccCcccccC
Q psy10327         73 LAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR---VNLAKPQKVQQT  126 (289)
Q Consensus        73 ~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~---mdvv~~i~~~~~  126 (289)
                      |++|+      .+|+++||.   .++|| |||++.+.||||++|+|||||++   ||||++|+....
T Consensus        87 f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t  153 (172)
T 2c3b_A           87 FADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGS  153 (172)
T ss_dssp             ------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCC
T ss_pred             ccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCC
Confidence            99996      368999984   35676 67778899999999999999996   999999987544

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2e-34  Score=250.86  Aligned_cols=126  Identities=29%  Similarity=0.409  Sum_probs=110.5

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCc-----ccCCCeeeeecccceeccccccc---cCCcccCCCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-----GYQGSSFHRIIPDFVSFMTKHQS---LKSRFSNLGG   72 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~-----~Y~g~~f~rv~~~~~iq~Gd~~~---~~g~~~~~~~   72 (289)
                      ||++++++++|+|+||||.+.||+||+||++||+++++.     .|+|+.||||+|+|||||||+..   .++.++|+..
T Consensus        64 ~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~  143 (229)
T 1z81_A           64 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEK  143 (229)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSC
T ss_pred             EEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCc
Confidence            689999999999999999999999999999999776541     29999999999999999999853   3468999999


Q ss_pred             Ccccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEE--E-eccccCcccccC
Q psy10327         73 LAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRII--R-VNLAKPQKVQQT  126 (289)
Q Consensus        73 ~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi--~-mdvv~~i~~~~~  126 (289)
                      |++|+      .+|+++||.   .++|| |||++.+.|+||++|+|||||+  + ||||++|+....
T Consensus       144 f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t  210 (229)
T 1z81_A          144 FDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSV  210 (229)
T ss_dssp             CCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCB
T ss_pred             ccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCC
Confidence            99996      379999984   45777 6777889999999999999999  8 999999987554

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=3.5e-34  Score=250.82  Aligned_cols=125  Identities=18%  Similarity=0.231  Sum_probs=106.5

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccC-----------C----C--cccCCCeeeeecccceecccccc-c
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----------K----G--FGYQGSSFHRIIPDFVSFMTKHQ-S   62 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~-----------~----g--~~Y~g~~f~rv~~~~~iq~Gd~~-~   62 (289)
                      |||+|++|++|+|+||||.+.||+||+||++||+|+           +    |  |+|+|+.||||+|+|||||||+. +
T Consensus        19 ~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g   98 (234)
T 2ose_A           19 MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNS   98 (234)
T ss_dssp             EEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC--
T ss_pred             EEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCC
Confidence            689999999999999999999999999999999876           4    5  77999999999999999999954 2


Q ss_pred             --cCCcccCCCC-----Ccccc-----chhhhhccc----C---CCCC-eEEecCC------CCCCCCCCCccceEEE-e
Q psy10327         63 --LKSRFSNLGG-----LAEEV-----DDKVLNAAF----I---PFGD-LVDIQMP------LDYETEKHQLFGRIIR-V  115 (289)
Q Consensus        63 --~~g~~~~~~~-----~~~e~-----~~g~~~~~~----~---~~Gs-~fii~~~------~p~ldg~~~vFG~Vi~-m  115 (289)
                        .+|.++|+..     |+ +.     .+|+++||.    .   ++|| |||++.+      .||||++|+|||||++ |
T Consensus        99 ~G~Gg~siyg~~~~p~~f~-~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~Gm  177 (234)
T 2ose_A           99 NGSSAGTVYCDEPIPPVFG-DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGL  177 (234)
T ss_dssp             --CCCCCTTTTCCBCCCCC-SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECH
T ss_pred             CCCCCccccCCccCccccc-CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCH
Confidence              3577899887     65 32     379999997    3   4677 6666778      8999999999999998 9


Q ss_pred             ccccCcccccC
Q psy10327        116 NLAKPQKVQQT  126 (289)
Q Consensus       116 dvv~~i~~~~~  126 (289)
                      |||++|+....
T Consensus       178 dVv~~I~~~~t  188 (234)
T 2ose_A          178 DVLDKINSMIK  188 (234)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHhCCc
Confidence            99999987544

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=6.8e-34  Score=235.88  Aligned_cols=119  Identities=21%  Similarity=0.281  Sum_probs=104.8

Q ss_pred             eCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCccccc----
Q psy10327          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEVD----   78 (289)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~~----   78 (289)
                      +..|+.|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+.+.  ++.++|+..|++|..    
T Consensus         9 ~~~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~   85 (160)
T 2fu0_A            9 IIYTTMGDIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHLN   85 (160)
T ss_dssp             EEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTBC
T ss_pred             EEEecCccEEEEEeCCCChHHHHHHHHHh--ccCc-cCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCCccccccCCcc
Confidence            34688999999999999999999999999  8899 99999999999999999998754  478899999999863    


Q ss_pred             ---hhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 ---DKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 ---~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                         +|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus        86 h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t  141 (160)
T 2fu0_A           86 HSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRT  141 (160)
T ss_dssp             SSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCc
Confidence               47888984   35666 67777899999999999999998 999999987554

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=7.5e-34  Score=240.70  Aligned_cols=121  Identities=17%  Similarity=0.261  Sum_probs=106.4

Q ss_pred             ceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc--
Q psy10327          2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV--   77 (289)
Q Consensus         2 di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~--   77 (289)
                      ++.+. |++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+.+.  +|.++|+..|++|.  
T Consensus        18 ~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~   93 (185)
T 2poe_A           18 GVRII-TNYGDLKFELFCSQCPKACKNFLALS--ASGY-YKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYP   93 (185)
T ss_dssp             EEEEE-ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSCBCCCCCT
T ss_pred             EEEEE-ecCccEEEEEeCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccccC
Confidence            45665 89999999999999999999999999  7899 99999999999999999998754  46889999999986  


Q ss_pred             -----chhhhhcccC-------CCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -----DDKVLNAAFI-------PFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -----~~g~~~~~~~-------~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                           .+|+++||..       ++|| |||++.+.|+||++|+|||||++ ||||++|+..+.
T Consensus        94 ~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  156 (185)
T 2poe_A           94 ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPS  156 (185)
T ss_dssp             TSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCB
T ss_pred             CCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCc
Confidence                 3689999843       3566 77778899999999999999998 999999987554

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=7.3e-34  Score=236.16  Aligned_cols=121  Identities=21%  Similarity=0.291  Sum_probs=105.7

Q ss_pred             ceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc--
Q psy10327          2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV--   77 (289)
Q Consensus         2 di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~--   77 (289)
                      .+.+. |++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+||+||||+.+.  ++.++|+..|++|.  
T Consensus         2 ~v~~~-T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~   77 (161)
T 2ok3_A            2 SVTLH-TDVGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSE   77 (161)
T ss_dssp             EEEEE-ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCT
T ss_pred             EEEEE-eCCccEEEEEcCCCCcHHHHHHHHHh--hhcc-cCCCEEEEEECCCEEecCCCCCCCCCCCcccCCccccccCc
Confidence            34454 89999999999999999999999999  7789 99999999999999999998754  46899999999885  


Q ss_pred             -----chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -----DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -----~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                           .+|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus        78 ~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~  136 (161)
T 2ok3_A           78 YLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPV  136 (161)
T ss_dssp             TCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCB
T ss_pred             CcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCc
Confidence                 368888984   35666 77778899999999999999998 999999987655

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=2e-33  Score=234.34  Aligned_cols=102  Identities=32%  Similarity=0.557  Sum_probs=92.8

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcCC-CCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFI-LKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~~-~~~~  259 (289)
                      |+.|+|+||||++.||+||+||++||  ++|| |+|+.||||+|+|||||||+..+.   +.++++..|++|... ++| 
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~~~~l~~-   78 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEANNGLKN-   78 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCCCSSCCC-
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccccccccc-
Confidence            99999999999999999999999999  7899 999999999999999999986432   456788899999875 555 


Q ss_pred             CCcEEEEecC-CCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANS-GPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~-~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+|||||+ +|||++|||||+++++||||
T Consensus        79 ~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld  109 (164)
T 1lop_A           79 TRGTLAMARTQAPHSATAQFFINVVDNDFLN  109 (164)
T ss_dssp             CTTEEEECCCSSTTCBCSCEEEESSCCGGGS
T ss_pred             CccEEEEeecCCCCCccceEEEEcCCccccC
Confidence            6999999975 69999999999999999998

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=8.9e-34  Score=238.45  Aligned_cols=121  Identities=24%  Similarity=0.349  Sum_probs=106.4

Q ss_pred             eeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCccccc--
Q psy10327          3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEVD--   78 (289)
Q Consensus         3 i~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~~--   78 (289)
                      ..+..|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+.+.  ++.++|+..|++|..  
T Consensus        23 ~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~   99 (176)
T 2a2n_A           23 SAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHST   99 (176)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTT
T ss_pred             EEEEEecCccEEEEEeCCCChHHHHHHHHHh--hcCc-cCCCEEEEEECCcEEEccCCCCCCCCCCcccCCccccccccc
Confidence            4566789999999999999999999999999  7899 99999999999999999998754  478899999999863  


Q ss_pred             -----hhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 -----DKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 -----~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                           +|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus       100 l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  157 (176)
T 2a2n_A          100 LRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKV  157 (176)
T ss_dssp             CCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCc
Confidence                 48888984   35666 67777899999999999999998 999999987544

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=9.4e-34  Score=236.40  Aligned_cols=118  Identities=25%  Similarity=0.421  Sum_probs=104.6

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCccccc-----
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEVD-----   78 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~~-----   78 (289)
                      -.|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+.+.  ++.++|+..|++|..     
T Consensus        16 l~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h   92 (166)
T 2x7k_A           16 LETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKF   92 (166)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTSCC
T ss_pred             EEeCCCcEEEEEccCCCCHHHHHHHHHH--hcCC-CCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCccccccccccCC
Confidence            3578999999999999999999999999  7899 99999999999999999998754  478999999999962     


Q ss_pred             --hhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 --DKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 --~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                        +|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus        93 ~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t  147 (166)
T 2x7k_A           93 TGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVET  147 (166)
T ss_dssp             CSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCB
T ss_pred             CCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCc
Confidence              68999984   35666 77778899999999999999998 999999987554

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=99.98  E-value=8.3e-33  Score=231.35  Aligned_cols=110  Identities=28%  Similarity=0.439  Sum_probs=95.4

Q ss_pred             CCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCC
Q psy10327        169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNK  248 (289)
Q Consensus       169 ~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~  248 (289)
                      ++.|.|+     |+.|+|+||||++.||+||+||++||  +.+| |+++.||||+|+|||||||+....   +.+.++..
T Consensus         3 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~---~~~~~~~~   71 (167)
T 3s6m_A            3 GSMVELH-----TNHGVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFEPGL---KQKPTDAP   71 (167)
T ss_dssp             CCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTTEEEESSEETTT---EECCCCCC
T ss_pred             CcEEEEE-----eCCceEEEEEeCCCCcHHHHHHHHHh--hhcc-cCCCEeEEecCCcEEEeccccCCC---CCCCCCCc
Confidence            4567776     99999999999999999999999999  7889 999999999999999999986432   23456778


Q ss_pred             CCCCcCCCCCCCCcEEEEec-CCCCCCCceEEEEcCCCCCCC
Q psy10327        249 FEDENFILKHTGPGVLSMAN-SGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       249 ~~~e~~~~~~~~~G~v~ma~-~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +++|.....++++|+||||| .+|||++|||||++.++||||
T Consensus        72 ~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld  113 (167)
T 3s6m_A           72 IANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLN  113 (167)
T ss_dssp             BCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGS
T ss_pred             cCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcC
Confidence            88886544445799999999 569999999999999999998

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=99.98  E-value=2.7e-33  Score=233.49  Aligned_cols=118  Identities=20%  Similarity=0.230  Sum_probs=104.6

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc------ch
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV------DD   79 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~------~~   79 (289)
                      -.|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+....|.++++..|++|.      .+
T Consensus         4 l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~g~~~~g~~~~dE~~~~l~~~~   80 (164)
T 1lop_A            4 FHTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTR   80 (164)
T ss_dssp             EEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTTEECCCCCCBCCCCCSSCCCCT
T ss_pred             EEeCCCCEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCceEecCCcccCCCcCCCCCccccccccccccCc
Confidence            3588999999999999999999999999  8899 9999999999999999999986667888999999986      36


Q ss_pred             hhhhccc----CCCCC-eEEecCCCCCCCCC--------CCccceEEE-eccccCcccccC
Q psy10327         80 KVLNAAF----IPFGD-LVDIQMPLDYETEK--------HQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        80 g~~~~~~----~~~Gs-~fii~~~~p~ldg~--------~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      |+++||.    .++|| |||++.+.||||++        |+|||||++ ||||++|+..+.
T Consensus        81 G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t  141 (164)
T 1lop_A           81 GTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVAT  141 (164)
T ss_dssp             TEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             cEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCc
Confidence            8999994    24666 67777899999998        999999998 999999987554

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=99.97  E-value=5.2e-33  Score=237.14  Aligned_cols=117  Identities=25%  Similarity=0.381  Sum_probs=104.0

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV-------   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~-------   77 (289)
                      .|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+.+.  +|.++|+..|++|.       
T Consensus        44 ~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~  120 (196)
T 2b71_A           44 YTNLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHT  120 (196)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTTCCCC
T ss_pred             EeCCCCEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccCCcCcC
Confidence            578999999999999999999999999  7899 99999999999999999998754  46899999999984       


Q ss_pred             chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .+|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus       121 ~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  174 (196)
T 2b71_A          121 GAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQT  174 (196)
T ss_dssp             STTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             CCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCc
Confidence            378999984   35666 77778899999999999999998 999999987554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.97  E-value=7.5e-33  Score=258.83  Aligned_cols=125  Identities=34%  Similarity=0.527  Sum_probs=110.8

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCc--------ccCCCeeeeecccceecccccc---ccCCcccC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF--------GYQGSSFHRIIPDFVSFMTKHQ---SLKSRFSN   69 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~--------~Y~g~~f~rv~~~~~iq~Gd~~---~~~g~~~~   69 (289)
                      ||++|++++.|+|+||||.+.||+||+||+.||++++|+        .|+|+.||||+|+|||||||++   +++|.++|
T Consensus        20 ~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~~~~~   99 (370)
T 1ihg_A           20 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIY   99 (370)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             EEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCCCCCC
Confidence            689999999999999999999999999999999886643        2999999999999999999987   34578999


Q ss_pred             CCCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         70 LGGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        70 ~~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                      +..|++|+      .+|+++|++   .++|| |||++.+.|||||+|+|||+|++ |+||++|+...
T Consensus       100 ~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~  166 (370)
T 1ihg_A          100 GEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVE  166 (370)
T ss_dssp             BSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCC
Confidence            99999996      369999984   35677 77778899999999999999998 99999998643

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=99.97  E-value=5.2e-33  Score=237.16  Aligned_cols=118  Identities=25%  Similarity=0.378  Sum_probs=104.7

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc------
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV------   77 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~------   77 (289)
                      -.|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+.+.  ++.++|+..|++|.      
T Consensus        24 l~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~f~dE~~~~l~h  100 (197)
T 1zkc_A           24 LHTNKGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSH  100 (197)
T ss_dssp             EEETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCCCCTTCCS
T ss_pred             EEeCCccEEEEEcCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCccccccCcCcCC
Confidence            4588999999999999999999999999  8899 99999999999999999998754  47899999999984      


Q ss_pred             -chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                       .+|+++||.   .++|| |||++.+.|+||++|+|||||++ ||||++|+..+.
T Consensus       101 ~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  155 (197)
T 1zkc_A          101 TGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVES  155 (197)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCB
T ss_pred             CCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCC
Confidence             378999984   35666 77778899999999999999998 999999987544

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=99.97  E-value=7.3e-33  Score=231.33  Aligned_cols=117  Identities=18%  Similarity=0.281  Sum_probs=103.4

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc------chh
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV------DDK   80 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~------~~g   80 (289)
                      .|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+...++.+.++..|++|.      .+|
T Consensus        10 ~t~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~~~~~~g~~~~dE~~~~l~~~~G   86 (166)
T 1v9t_A           10 TTSAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRG   86 (166)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEESSBCTTCCBCCCCCCBCCCGGGSCCCCTT
T ss_pred             EeCCccEEEEEcCCCCcHHHHHHHHHh--ccCC-CCCCEEEEEECCcEEEcCCcCcCCCCCCCCCcccccccccccCCce
Confidence            488999999999999999999999999  8899 9999999999999999999987766667788888886      368


Q ss_pred             hhhccc----CCCCC-eEEecCCCCCCCCC-----CCccceEEE-eccccCcccccC
Q psy10327         81 VLNAAF----IPFGD-LVDIQMPLDYETEK-----HQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        81 ~~~~~~----~~~Gs-~fii~~~~p~ldg~-----~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      +++||.    .++|| |||++.+.||||++     |+|||||++ ||||++|+..+.
T Consensus        87 ~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~  143 (166)
T 1v9t_A           87 TIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             EEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             EEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCC
Confidence            999985    24666 67777899999998     999999998 999999987554

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=99.97  E-value=1.9e-32  Score=229.21  Aligned_cols=117  Identities=21%  Similarity=0.299  Sum_probs=103.0

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc------chh
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV------DDK   80 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~------~~g   80 (289)
                      .|++|+|+||||.+.||+||+||++||  +.+| |+++.||||+|+|||||||+....+.+.++..+++|.      .+|
T Consensus         9 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~~~~~~~~~~~~~E~~~~l~~~~G   85 (167)
T 3s6m_A            9 HTNHGVIKLELDEAKAPKTVENFLNYV--KKGH-YDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIANEANNGLKNDTY   85 (167)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHH--HHTT-TTTEECCEEETTTEEEESSEETTTEECCCCCCBCCCGGGCCCCCTT
T ss_pred             EeCCceEEEEEeCCCCcHHHHHHHHHh--hhcc-cCCCEeEEecCCcEEEeccccCCCCCCCCCCccCCcccccccCCcc
Confidence            589999999999999999999999999  7889 9999999999999999999987766667777788875      368


Q ss_pred             hhhccc----CCCCC-eEEecCCCCCCCCC--------CCccceEEE-eccccCcccccC
Q psy10327         81 VLNAAF----IPFGD-LVDIQMPLDYETEK--------HQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        81 ~~~~~~----~~~Gs-~fii~~~~p~ldg~--------~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      +++||.    .++|| |||++.+.||||++        |+|||||++ ||||++|+..+.
T Consensus        86 ~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t  145 (167)
T 3s6m_A           86 TIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKT  145 (167)
T ss_dssp             EEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCB
T ss_pred             EEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCc
Confidence            999985    24676 67777789999998        999999998 999999987554

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=99.97  E-value=1.2e-32  Score=235.82  Aligned_cols=118  Identities=25%  Similarity=0.421  Sum_probs=103.9

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCccccc-----
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEVD-----   78 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~~-----   78 (289)
                      -.|++|+|+||||.+.||+||+||++||  +.|| |+++.||||+|+|||||||+...  ++.++|+..|++|..     
T Consensus        16 l~T~~G~I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~f~dE~~~~l~h   92 (203)
T 2k7n_A           16 LETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKF   92 (203)
T ss_dssp             EEESSCEEEEEECTTTCTTHHHHHHHHH--HHTC-GGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSCBCCCCCCSSCC
T ss_pred             EEeCCCcEEEEEccCCCcHHHHHHHHHH--hcCc-cCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccccccC
Confidence            3578999999999999999999999999  7889 99999999999999999998754  478999999999962     


Q ss_pred             --hhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 --DKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 --~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                        +|+++||+   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus        93 ~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t  147 (203)
T 2k7n_A           93 TGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVET  147 (203)
T ss_dssp             CSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCE
T ss_pred             CCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCc
Confidence              68899984   34566 67777899999999999999998 999999987544

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=99.97  E-value=3.7e-32  Score=233.39  Aligned_cols=118  Identities=20%  Similarity=0.309  Sum_probs=101.0

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccc-----ccccc--CCcccC-------CC
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMT-----KHQSL--KSRFSN-------LG   71 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~G-----d~~~~--~g~~~~-------~~   71 (289)
                      ..|+.|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+||||||     |+.++  +|.++|       +.
T Consensus        11 l~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~~~~g~   87 (201)
T 3bo7_A           11 IVTTQGSLNIELHADMAPRACDSFLRLC--AVKY-FDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGA   87 (201)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCSSTTCC
T ss_pred             EEeCCCCEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccccccCCC
Confidence            3588999999999999999999999999  7899 999999999999999999     88754  478899       78


Q ss_pred             CCcccc-------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         72 GLAEEV-------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        72 ~~~~e~-------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .|++|.       .+|+++||.   .++|| |||++.+.||||++|+|||||++ ||||++|+..+.
T Consensus        88 ~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  154 (201)
T 3bo7_A           88 PFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET  154 (201)
T ss_dssp             CBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCB
T ss_pred             cccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCc
Confidence            898884       378999984   35666 77778899999999999999998 999999987554

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=99.97  E-value=4.3e-32  Score=230.70  Aligned_cols=119  Identities=24%  Similarity=0.270  Sum_probs=101.1

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCC-------------CcccCCCeeeeecccceeccccccccCCcccCCCC
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-------------GFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGG   72 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~-------------g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~   72 (289)
                      -.|++|+|+||||.+.||+||+||++||+|++             +| |+|+.||||+|+|||||||+.+.+ ...|+..
T Consensus        28 l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~-Y~g~~FhRVi~~fmiQgGd~~g~G-~gg~g~~  105 (191)
T 1w74_A           28 LHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPTGTG-RGGPGYK  105 (191)
T ss_dssp             EEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTTSSS-SCCSSCC
T ss_pred             EEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCc-cCCCEEEEEeCCCEEecCCCCCCC-CCCCCCc
Confidence            45889999999999999999999999998754             56 999999999999999999976443 3337788


Q ss_pred             Ccccc-------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE---eccccCcccccC
Q psy10327         73 LAEEV-------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR---VNLAKPQKVQQT  126 (289)
Q Consensus        73 ~~~e~-------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~---mdvv~~i~~~~~  126 (289)
                      |++|.       .+|+++||+   .++|| |||++.+.||||++|+|||||++   ||||++|+..+.
T Consensus       106 f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t  173 (191)
T 1w74_A          106 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT  173 (191)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCB
T ss_pred             cccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCc
Confidence            88884       368999984   35676 67778899999999999999994   999999987554

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=99.97  E-value=2.2e-31  Score=225.45  Aligned_cols=115  Identities=21%  Similarity=0.291  Sum_probs=98.9

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc------
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV------   77 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~------   77 (289)
                      -.|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+.+.  +|.++|+..|++|.      
T Consensus        29 l~T~~G~I~ieL~~~~aP~tv~NF~~L~--~~g~-Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h  105 (185)
T 2hq6_A           29 LKTTAGDIDIELWSKEAPKACRNFIQLC--LEAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRF  105 (185)
T ss_dssp             EEETTEEEEEEEBTTTCHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTBCS
T ss_pred             EEeCCccEEEEEeCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCccccccccCccc
Confidence            3478999999999999999999999999  7889 99999999999999999998754  46899999999985      


Q ss_pred             -chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEEeccc--cCccc
Q psy10327         78 -DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIRVNLA--KPQKV  123 (289)
Q Consensus        78 -~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~mdvv--~~i~~  123 (289)
                       .+|+++||.   .++|| |||++.+.|+||++|+|||||++|+++  ++|+.
T Consensus       106 ~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~G~~v~~~~~i~~  158 (185)
T 2hq6_A          106 NRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSE  158 (185)
T ss_dssp             CSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEECGGGHHHHHHTTC
T ss_pred             CCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEEeCeeehhhHHhh
Confidence             268899984   35666 677788999999999999999987775  45544

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=3.6e-31  Score=231.29  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=100.9

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccC--CCCCcccc----
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSN--LGGLAEEV----   77 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~--~~~~~~e~----   77 (289)
                      -.|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|+|||||||+.+.  +|.++|  +..|++|.    
T Consensus        26 l~T~~G~I~ieL~~d~aP~tv~NF~~L~--~~g~-Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f~dE~~~~l  102 (232)
T 3bkp_A           26 LHTSLGDLDVELWARECPLACRNFVQLC--LEGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRL  102 (232)
T ss_dssp             EEETTEEEEEEEBTTTCHHHHHHHHHHH--HHTT-TTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCBCCCCCTTC
T ss_pred             EEECCCcEEEEEcCCCCcHHHHHHHHHh--hcCc-cCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCccCCccccCc
Confidence            3578999999999999999999999999  7789 99999999999999999998754  478899  88899885    


Q ss_pred             ---chhhhhccc-----------------CCCCC-eEEecCCCCCCCCCCCccceEEEecc--ccCcccccC
Q psy10327         78 ---DDKVLNAAF-----------------IPFGD-LVDIQMPLDYETEKHQLFGRIIRVNL--AKPQKVQQT  126 (289)
Q Consensus        78 ---~~g~~~~~~-----------------~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~mdv--v~~i~~~~~  126 (289)
                         .+|+++||.                 .++|| |||++.+.||||++|+|||||++|++  +++|+..+.
T Consensus       103 ~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vvg~~v~~v~kI~~~~t  174 (232)
T 3bkp_A          103 KFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEV  174 (232)
T ss_dssp             CCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEECGGGHHHHHHHTTSCB
T ss_pred             CcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEEeCchHHHHHHHcCCc
Confidence               268999983                 35677 67777899999999999999998765  778876433

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=99.96  E-value=1.4e-30  Score=240.13  Aligned_cols=124  Identities=27%  Similarity=0.360  Sum_probs=104.8

Q ss_pred             cCCCCCCCCCeEEEEEEECc---EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCC
Q psy10327        161 SIDPKTKKNPQVYMDIKIGK---QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHN  237 (289)
Q Consensus       161 ~~~~~~~~~~~v~~~i~v~~---t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~  237 (289)
                      ...|+.+.+..|.|++.+..   ++.|+|+||||++.||+||+||++||  +.|| |||+.|||| ++|||||||+.. +
T Consensus       162 ~~~P~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~--~~Gf-YdGt~FHRV-~gFmIQgGDp~g-~  236 (369)
T 3rfy_A          162 RNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFVVQTGDPEG-P  236 (369)
T ss_dssp             TTSCEECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHH--HTTT-TTTEECEEE-EEEEECCCCCCC-C
T ss_pred             ccCccCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCeeeee-CCeeEecCCCCC-C
Confidence            34566677777888766543   36999999999999999999999999  7899 999999999 999999999973 4


Q ss_pred             CCC---------------------CcccCCCCCCCCcC-----CCCCCCCcEEEEecC--CCCCCCceEEEEc-------
Q psy10327        238 GTG---------------------GKSIYGNKFEDENF-----ILKHTGPGVLSMANS--GPNTNGSQFFLCT-------  282 (289)
Q Consensus       238 g~~---------------------~~~~~~~~~~~e~~-----~~~~~~~G~v~ma~~--~~~s~~sqFfI~l-------  282 (289)
                      ++|                     +.++|+..+++|++     .++|+++|+|||||+  +|||++||||||+       
T Consensus       237 G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~  316 (369)
T 3rfy_A          237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTP  316 (369)
T ss_dssp             CSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECS
T ss_pred             CCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCC
Confidence            444                     35677777777753     688999999999998  7999999999999       


Q ss_pred             CCCCCCC
Q psy10327        283 TKTEWNI  289 (289)
Q Consensus       283 ~~~~~LD  289 (289)
                      +++||||
T Consensus       317 ~~~~~LD  323 (369)
T 3rfy_A          317 SNSNILD  323 (369)
T ss_dssp             CCCSSSC
T ss_pred             CCCcccC
Confidence            4689998

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=99.95  E-value=2.5e-29  Score=231.85  Aligned_cols=115  Identities=21%  Similarity=0.092  Sum_probs=97.8

Q ss_pred             eeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC-----------------------
Q psy10327          8 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK-----------------------   64 (289)
Q Consensus         8 t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~-----------------------   64 (289)
                      ++.|+|+||||.+.||+||+||++||  +.|| |+|+.|||| |+|||||||+.+.+                       
T Consensus       185 ~~~G~I~IeL~~d~AP~Tv~NFl~L~--~~Gf-YdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g~~~~iP~E~~~~G~  260 (369)
T 3rfy_A          185 IEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF-YDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGE  260 (369)
T ss_dssp             CSEEEEEEEEETTTCHHHHHHHHHHH--HTTT-TTTEECEEE-EEEEECCCCCCCCCSCCCSCCCCCCCSSSSSSCSSSS
T ss_pred             ccceEEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCCeeeee-CCeeEecCCCCCCCCCccCcccCcCcccCccccccCC
Confidence            35899999999999999999999999  8899 999999999 99999999987542                       


Q ss_pred             CcccCCCCCcccc-----------chhhhhcccC-----CCCCeEEe-c-------CCCCCCCCCCCccceEEE-ecccc
Q psy10327         65 SRFSNLGGLAEEV-----------DDKVLNAAFI-----PFGDLVDI-Q-------MPLDYETEKHQLFGRIIR-VNLAK  119 (289)
Q Consensus        65 g~~~~~~~~~~e~-----------~~g~~~~~~~-----~~Gs~fii-~-------~~~p~ldg~~~vFG~Vi~-mdvv~  119 (289)
                      +.++|+..+++|.           .+|+++||..     ++||+|+| +       .+.||||++|+|||||++ ||||+
T Consensus       261 g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVd  340 (369)
T 3rfy_A          261 KTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLA  340 (369)
T ss_dssp             CCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGG
T ss_pred             CCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEEEEEecCHHHHH
Confidence            3577888787762           4799999964     46775555 4       378999999999999998 99999


Q ss_pred             CcccccC
Q psy10327        120 PQKVQQT  126 (289)
Q Consensus       120 ~i~~~~~  126 (289)
                      +|+..+.
T Consensus       341 kI~~GD~  347 (369)
T 3rfy_A          341 DLKVGDV  347 (369)
T ss_dssp             GCCTTCE
T ss_pred             HHhCCCc
Confidence            9988644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	1e-42
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	8e-13
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	4e-40
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	6e-13
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	1e-37
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	2e-12
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	4e-37
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	2e-07
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	7e-37
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-08
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	5e-36
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	8e-11
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	4e-35
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	1e-11
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	8e-35
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	7e-12
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	8e-35
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	6e-10
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	3e-34
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	1e-10
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-33
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	8e-08
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	6e-33
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	1e-04
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	7e-32
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	2e-07
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	5e-31
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	5e-08
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	6e-28
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	5e-07
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	2e-25
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	4e-05
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-24
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-07
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	3e-21
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	2e-05
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	5e-18
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-17
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-06
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	7e-17
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	1e-04
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-15
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-04
d2cqba1	89	d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer	3e-04
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	0.001
d2cq4a1	101	d.58.7.1 (A:132-232) RNA binding protein 23 {Human	0.002
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	0.003
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	0.003

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  142 bits (358), Expect = 1e-42
 Identities = 78/118 (66%), Positives = 87/118 (73%)

Query: 170 PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQ 229
             V+ DI      +G I  +L  D+VP+TA NFR LCT EKGFGY GS FHR+IPDFM Q
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61

Query: 230 GGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           GGDFT  NGTGGKSIYG KF DENF LKH  PG+LSMAN+GPNTNGSQFF+ T  T W
Sbjct: 62  GGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSW 119

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score = 62.8 bits (152), Expect = 8e-13
 Identities = 31/53 (58%), Positives = 36/53 (67%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           DI      +G I  +L  D+VP+TA NFR LCT EKGFGY GS FHR+IPDF
Sbjct: 6  FDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDF 58

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  135 bits (341), Expect = 4e-40
 Identities = 66/129 (51%), Positives = 84/129 (65%), Gaps = 8/129 (6%)

Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSS 218
           K   +V++D+ I     GRI ++L  D+ PRT  NF  LCT   G G        Y+GS+
Sbjct: 1   KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60

Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
           FHR+I +FM QGGDFT  +GTGG+SIYG  F+DE F++KH  P V+SMAN GPNTNGSQF
Sbjct: 61  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120

Query: 279 FLCTTKTEW 287
           F+ TT    
Sbjct: 121 FITTTPAPH 129

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score = 63.7 bits (154), Expect = 6e-13
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
          +D+ I     GRI ++L  D+ PRT  NF  LCT   G G        Y+GS+FHR+I +
Sbjct: 8  LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 67

Query: 53 FV 54
          F+
Sbjct: 68 FM 69

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-37
 Identities = 85/120 (70%), Positives = 103/120 (85%)

Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NP VY+D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 2   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 61

Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWN 288
           Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W 
Sbjct: 62  QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 121

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 30/54 (55%), Positives = 44/54 (81%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          +D+    + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 7  LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 60

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  128 bits (321), Expect = 4e-37
 Identities = 71/126 (56%), Positives = 82/126 (65%), Gaps = 6/126 (4%)

Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE------KGFGYQGSSFHR 221
           K  +V+ DI I     GRI  +L  D+ PRT ENFR LCT E      K   Y+ S FHR
Sbjct: 2   KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61

Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
           IIP FMCQGGD TN NG+GG+SIYG  F DENF +KH  PG+LSMAN+GPNTN SQFF+ 
Sbjct: 62  IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121

Query: 282 TTKTEW 287
                W
Sbjct: 122 LVPCPW 127

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLC------THEKGFGYQGSSFHRIIPDF 53
           DI I     GRI  +L  D+ PRT ENFR LC      +  K   Y+ S FHRIIP F
Sbjct: 8  FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQF 66

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  127 bits (319), Expect = 7e-37
 Identities = 82/127 (64%), Positives = 94/127 (74%), Gaps = 7/127 (5%)

Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------KGFGYQGSSFHR 221
             +V+ DI IG +  GRI ++L  D+VP+TA NFR LCT E       K   ++GS FHR
Sbjct: 3   RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62

Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
           IIP+FM QGGDFT  NGTGG+SIYG KF DENF  KHTGPGVLSMAN+GPNTNGSQFFLC
Sbjct: 63  IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLC 122

Query: 282 TTKTEWN 288
           T KTEW 
Sbjct: 123 TVKTEWL 129

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 7/60 (11%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------KGFGYQGSSFHRIIPDF 53
           DI IG +  GRI ++L  D+VP+TA NFR LCT E       K   ++GS FHRIIP+F
Sbjct: 8  FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNF 67

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  125 bits (314), Expect = 5e-36
 Identities = 74/125 (59%), Positives = 91/125 (72%), Gaps = 4/125 (3%)

Query: 167 KKNPQ----VYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRI 222
           K+ P     V+ D++IG ++VGRI I L  ++VP+T ENF  L T EKG+GY+GS FHR+
Sbjct: 1   KRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRV 60

Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 282
           I DFM QGGDFT  +GTGG SIYG  F DENF LKH G G +SMAN+GP+TNGSQFF+  
Sbjct: 61  IKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120

Query: 283 TKTEW 287
           TK  W
Sbjct: 121 TKPTW 125

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 57.5 bits (138), Expect = 8e-11
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           D++IG ++VGRI I L  ++VP+T ENF  L T EKG+GY+GS FHR+I DF
Sbjct: 12 FDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDF 64

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  123 bits (308), Expect = 4e-35
 Identities = 73/121 (60%), Positives = 85/121 (70%)

Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
           K   +VY D++IG + +GRI I L    VP+TA NF  L    KG GY GS FHR+I DF
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63

Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
           M QGGDFT  +GTGG+SIYG KF DENF LKH G G LSMAN+G +TNGSQFF+ T KT 
Sbjct: 64  MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTP 123

Query: 287 W 287
           W
Sbjct: 124 W 124

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 27/53 (50%), Positives = 33/53 (62%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           D++IG + +GRI I L    VP+TA NF  L    KG GY GS FHR+I DF
Sbjct: 11 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 8e-35
 Identities = 99/119 (83%), Positives = 107/119 (89%)

Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
           NPQVYMDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP FMC
Sbjct: 1   NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 60

Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           QGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL   KT+W
Sbjct: 61  QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 119

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 7e-12
 Identities = 40/53 (75%), Positives = 45/53 (84%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
          MDIKIG +  GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F
Sbjct: 6  MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQF 58

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  122 bits (307), Expect = 8e-35
 Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 8/133 (6%)

Query: 163 DPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------Y 214
            P    NP+V+ D+ IG + VGRI ++L  D+VP+TAENFR LCT EKG G        +
Sbjct: 8   KPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHF 67

Query: 215 QGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN 274
           +G  FHRII  FM QGGDF+N NGTGG+SIYG KFEDENF  KH   G+LSMAN+G NTN
Sbjct: 68  KGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTN 127

Query: 275 GSQFFLCTTKTEW 287
           GSQFF+ T  T  
Sbjct: 128 GSQFFITTVPTPH 140

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (133), Expect = 6e-10
 Identities = 31/61 (50%), Positives = 39/61 (63%), Gaps = 8/61 (13%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
           D+ IG + VGRI ++L  D+VP+TAENFR LCT EKG G        ++G  FHRII  
Sbjct: 19 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKK 78

Query: 53 F 53
          F
Sbjct: 79 F 79

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  120 bits (301), Expect = 3e-34
 Identities = 70/121 (57%), Positives = 88/121 (72%), Gaps = 1/121 (0%)

Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
               +VY DI IG + VGR+ I L  + VP+T ENF+ L + E GFGY+GS FHR+I +F
Sbjct: 3   VVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNF 62

Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
           M QGGDFTN +GTGGKSIYG +F+DEN  +KH   G +SMAN+GPN+NGSQFF+ T  T 
Sbjct: 63  MIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTP 121

Query: 287 W 287
           W
Sbjct: 122 W 122

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 56.8 bits (136), Expect = 1e-10
 Identities = 28/53 (52%), Positives = 37/53 (69%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           DI IG + VGR+ I L  + VP+T ENF+ L + E GFGY+GS FHR+I +F
Sbjct: 10 FDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNF 62

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  118 bits (297), Expect = 1e-33
 Identities = 71/123 (57%), Positives = 86/123 (69%), Gaps = 5/123 (4%)

Query: 170 PQVYMDIK-----IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIP 224
            QV+ D++       + +VGRI   L    VP+TA+NFR LC    G GY+ S+FHRIIP
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 61

Query: 225 DFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
           +FM QGGDFT  NGTGG+SIYG+KF DENF  KH   G+LSMAN+GPNTNGSQFF+ T  
Sbjct: 62  NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 121

Query: 285 TEW 287
           T W
Sbjct: 122 TSW 124

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 49.1 bits (116), Expect = 8e-08
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 2  DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
           +   + +VGRI   L    VP+TA+NFR LC    G GY+ S+FHRIIP+F
Sbjct: 12 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNF 63

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 6e-33
 Identities = 59/129 (45%), Positives = 79/129 (61%), Gaps = 10/129 (7%)

Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
           A+I P + + P VY++  +G      I ++L +   P+T +NF  L       G +   F
Sbjct: 2   AAIPPDSWQPPNVYLETSMG-----IIVLELYWKHAPKTCKNFAELARRGYYNGTK---F 53

Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
           HRII DFM QGGD T   G GG SIYG +FEDE +  LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54  HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112

Query: 279 FLCTTKTEW 287
           F+    T+W
Sbjct: 113 FVTLAPTQW 121

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G I ++L +   P+T +NF  L       G +   FHRII DF+
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELARRGYYNGTK---FHRIIKDFM 61

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  114 bits (285), Expect = 7e-32
 Identities = 73/128 (57%), Positives = 91/128 (71%), Gaps = 5/128 (3%)

Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFH 220
           +  NP V+ D+ IG QEVGR+ I+L  D+VP+TAENFR  CT E        GY+GS+FH
Sbjct: 3   SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFH 62

Query: 221 RIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 280
           R+I DFM QGGDF N +GTG  SIY   F DENF L+H+ PG+LSMANSGP+TNG QFF+
Sbjct: 63  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 122

Query: 281 CTTKTEWN 288
             +K +W 
Sbjct: 123 TCSKCDWL 130

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 5/58 (8%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDF 53
           D+ IG QEVGR+ I+L  D+VP+TAENFR  CT E        GY+GS+FHR+I DF
Sbjct: 11 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 68

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 5e-31
 Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G + ++L  DL P+T ENF  LC   K   Y G+ FHR I +F+ QGGD T   GTGG+S
Sbjct: 10  GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGES 65

Query: 244 IYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
            +G  F+DE    L HTG G+LSMANSGPN+N SQFF+      +
Sbjct: 66  YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAY 110

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          G + ++L  DL P+T ENF  LC   K   Y G+ FHR I +FV
Sbjct: 10 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFV 50

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  104 bits (260), Expect = 6e-28
 Identities = 68/125 (54%), Positives = 86/125 (68%), Gaps = 5/125 (4%)

Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-----YQGSSFHRI 222
            NP V+MDI +G   +G+   +L  ++VP+T+ENFR  CT E         Y+ + FHR+
Sbjct: 15  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRV 74

Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 282
           I +FM QGGDF NHNG+G  SIYG KF+DENF +KH   G+LSMANSGPNTNG QFF+ T
Sbjct: 75  IKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITT 134

Query: 283 TKTEW 287
            K EW
Sbjct: 135 KKCEW 139

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 46.8 bits (110), Expect = 5e-07
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-----YQGSSFHRIIPDF 53
          MDI +G   +G+   +L  ++VP+T+ENFR  CT E         Y+ + FHR+I +F
Sbjct: 21 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 78

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (241), Expect = 2e-25
 Identities = 53/115 (46%), Positives = 65/115 (56%), Gaps = 6/115 (5%)

Query: 174 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDF 233
           M + +   +VG I I++  +  P+T ENF  LC      G     FHR I  FM Q GD 
Sbjct: 1   MSVTL-HTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI---FHRNIKGFMVQTGDP 56

Query: 234 TNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
               G GG SI+G KFEDE +  LKH   GV+SMAN+GPNTNGSQFF+   K   
Sbjct: 57  -TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPH 110

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
          M + +   +VG I I++  +  P+T ENF  LC      G     FHR I  F+
Sbjct: 1  MSVTL-HTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI---FHRNIKGFM 50

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 94.2 bits (233), Expect = 3e-24
 Identities = 42/116 (36%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDFMCQGG 231
           G I I L  +  P+T  NF  L    K +             Y G+ FHR+I  FM QGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 232 DFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           D     GTG         ++ +  L+   P +L+MAN+GP TNGSQFF+   KT  
Sbjct: 73  DP---TGTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 125

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDFV 54
          G I I L  +  P+T  NF  L    K +             Y G+ FHR+I  F+
Sbjct: 13 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 68

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 3e-21
 Identities = 47/120 (39%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFM 227
           + P+   D  I    +G I  +L     P+T ENF   C H +   Y G +FHRII  FM
Sbjct: 3   EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFM 59

Query: 228 CQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
            Q GD T     G     G   ++ +  L+H  P  LSMAN+G NTNGSQFF+    T W
Sbjct: 60  IQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPW 119

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 1  MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKH 60
           D  I    +G I  +L     P+T ENF   C H +   Y G +FHRII  F+      
Sbjct: 9  SDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDP 65

Query: 61 Q 61
           
Sbjct: 66 T 66

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 77.6 bits (190), Expect = 5e-18
 Identities = 43/122 (35%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
               + Y+ I       G   ++L +   P+T  NF  LC                +   
Sbjct: 12  GHTERGYITIYTNL---GDFEVELYWYHSPKTCLNFYTLCEMGFYDNTI----FHRVIPN 64

Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
               G      G GGKSIYG  FEDE N  LKHTG G+LSM+N+GPNTN SQFF+     
Sbjct: 65  FVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPL 124

Query: 286 EW 287
             
Sbjct: 125 PH 126

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 74.6 bits (182), Expect = 4e-17
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
           G I I+   D  P T +NF   C   +   Y  + FHR+I  FM Q        G   K+
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQ--GGGFEPGMKQKA 63

Query: 244 IYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWN 288
                  + N  LK+T   +       P++  +QFF+     ++ 
Sbjct: 64  TKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFL 108

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKH 60
          G I I+   D  P T +NF   C   +   Y  + FHR+I  F+      
Sbjct: 9  GDIVIKTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQGGGF 55

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 73.8 bits (180), Expect = 7e-17
 Identities = 49/106 (46%), Positives = 62/106 (58%), Gaps = 5/106 (4%)

Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
           +G I I L Y    +T +NF     +          FHR+I  FM Q GD +   GTGG+
Sbjct: 10  MGDIHISLFYKECKKTVQNFSVHSINGYYNNCI---FHRVIKHFMVQTGDPSGD-GTGGE 65

Query: 243 SIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
           SI+GN+FEDE F  L H+ P ++SMAN GPNTNGSQFF+ T    W
Sbjct: 66  SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPW 111

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 8/51 (15%), Positives = 14/51 (27%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKH 60
          +G I I L Y    +T +NF     +            +         +  
Sbjct: 10 MGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD 60

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 70.7 bits (172), Expect = 1e-15
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
           K +P V +         G I ++L     P + +NF                FHR+IP F
Sbjct: 2   KGDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSGFYNNTT---FHRVIPGF 53

Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
           M QGG FT        +       D    L++T   +     +  ++  SQFF+      
Sbjct: 54  MIQGGGFTEQMQQKKPNPPIKNEADNG--LRNTRGTIAMARTADKDSATSQFFINVADNA 111

Query: 287 W 287
           +
Sbjct: 112 F 112

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSN 69
           G I ++L     P + +NF                FHR+IP F+           +   
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVNSGFYNNTT---FHRVIPGFMIQGGGFTEQMQQKKP 69

Query: 70 LGGLAEEVDDK 80
             +  E D+ 
Sbjct: 70 NPPIKNEADNG 80

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 42/79 (53%), Positives = 51/79 (64%), Gaps = 24/79 (30%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETE------------------------KH 106
           GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETE                        + 
Sbjct: 11  GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 70

Query: 107 QLFGRIIRVNLAKPQKVQQ 125
           +LFGR IRVNLAKP ++++
Sbjct: 71  ELFGRTIRVNLAKPMRIKE 89

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 18/69 (26%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDY------------------ETEKHQLFGRI 112
           GG+A  + D+++   F PFG +++I++  +                         + G +
Sbjct: 24  GGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 83

Query: 113 IRVNLAKPQ 121
           ++    K  
Sbjct: 84  VKCYWGKES 92

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 23/75 (30%)

Query: 71  GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
             LA  +  + L   F   G + D+++  D  + +                        +
Sbjct: 24  MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQR 83

Query: 108 LFGRIIRVNLAKPQK 122
           L G  I V  ++ +K
Sbjct: 84  LLGVPIIVQASQAEK 98

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 24/84 (28%)

Query: 65  SRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYET------------------- 103
            + S+L   GL  +  ++ L   F  FG+++ +Q+  D +T                   
Sbjct: 6   QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65

Query: 104 ---EKHQLFGRIIRVNLAKPQKVQ 124
              ++H + GR     L   ++ Q
Sbjct: 66  VMSQRHMIDGRWCDCKLPNSKQSQ 89

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 17/73 (23%)

Query: 71  GGLA-EEVDDKVLNAAFIPFGDLVDIQMPLDY----------------ETEKHQLFGRII 113
           G L    V    + A F  +G +V   +   +                  +   + G+++
Sbjct: 21  GNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVL 80

Query: 114 RVNLAKPQKVQQT 126
            +NLA   KV ++
Sbjct: 81  DINLAAEPKVNRS 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.98
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	99.97
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	99.97
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	99.97
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.97
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	99.97
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	99.97
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	99.97
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	99.97
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	99.97
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.97
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.96
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	99.96
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	99.96
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.96
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	99.96
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	99.96
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	99.96
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	99.96
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	99.96
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	99.96
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	99.95
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	99.95
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	99.95
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	99.95
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	99.95
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	99.95
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	99.95
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	99.95
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	99.95
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	99.94
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	99.94
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	99.94
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.94
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.94
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	99.94
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.94
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	99.94
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	99.93
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	99.93

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=233.03  Aligned_cols=120  Identities=80%  Similarity=1.319  Sum_probs=113.0

Q ss_pred             CCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccC-CccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCC
Q psy10327        169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-GFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGN  247 (289)
Q Consensus       169 ~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~-g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~  247 (289)
                      ||+|||||+++++++|+|+||||.+.||+||+||++||++.+ ++ |+++.||||+|+|++|+|++...++.++.+.++.
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~   79 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGK   79 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccc-cCCcEEEEEEEeeeEEeeeccCCCCCCCccccCc
Confidence            689999999999999999999999999999999999997755 56 9999999999999999999987778888888888


Q ss_pred             CCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        248 KFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       248 ~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .+.++....+|+.+|+|+|++.+|++++|||||+++++|+||
T Consensus        80 ~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ld  121 (161)
T d2r99a1          80 KFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLD  121 (161)
T ss_dssp             CBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             cccccccccccccceeeeecccCCCCcCcceEeccCCccccC
Confidence            888889999999999999999999999999999999999998

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=3.3e-33  Score=233.04  Aligned_cols=121  Identities=67%  Similarity=1.119  Sum_probs=114.6

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhcc--------CCccccCCceEEEecCcEEEeCCCCCCCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE--------KGFGYQGSSFHRIIPDFMCQGGDFTNHNGT  239 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~--------~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~  239 (289)
                      .+++|||||+|+++++|+|+||||.+.||+||+||++||+++        .++ |+++.||||++++++|+|++..++++
T Consensus         2 ~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~i~~G~~~~~~~~   80 (172)
T d2igva1           2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNFMIQGGDFTRGNGT   80 (172)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccc-cCCcceeEEEecceEEcCCccCCCCC
Confidence            578999999999999999999999999999999999999763        467 99999999999999999999888888


Q ss_pred             CCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++..+++.++++|.....|+.+|+||||+++|++++|||||+++++|+||
T Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld  130 (172)
T d2igva1          81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLD  130 (172)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             CCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccC
Confidence            88999999999999999999999999999999999999999999999998

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=4.4e-33  Score=231.88  Aligned_cols=121  Identities=58%  Similarity=1.004  Sum_probs=113.9

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhcc-------CCccccCCceEEEecCcEEEeCCCCCCCCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------KGFGYQGSSFHRIIPDFMCQGGDFTNHNGTG  240 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~-------~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~  240 (289)
                      .+++|||||+|++|++|+|+||||.+.||++|+||++||++.       .++ |+++.||||++++++|+|+...+++.+
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~g~~~~~~~~~   80 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLH-YKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEEC-CTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCc-cCcccceEEEeCceEEecCccCCCCCC
Confidence            578999999999999999999999999999999999999753       467 999999999999999999998888888


Q ss_pred             CcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        241 GKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       241 ~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +...++..++++...+.|+++|+||||+.++++++|||||+++++|+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld  129 (170)
T d1qnga_          81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLD  129 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCccccc
Confidence            8888898999999999999999999999999999999999999999998

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=8.3e-33  Score=228.46  Aligned_cols=120  Identities=65%  Similarity=1.087  Sum_probs=112.7

Q ss_pred             CeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCC
Q psy10327        170 PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKF  249 (289)
Q Consensus       170 ~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~  249 (289)
                      ..|||||+++++++|+|+||||.+.||+||+||++||+++.+++|+++.||||+|++++|+|++...++.++.+.+..++
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~   81 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKF   81 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCcc
Confidence            46899999999999999999999999999999999997666656999999999999999999998888888888888899


Q ss_pred             CCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        250 EDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       250 ~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .+|+..++|+++|+|||++.++++++|||||++++.|+||
T Consensus        82 ~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld  121 (162)
T d2cfea1          82 ADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLD  121 (162)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             ccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCcccc
Confidence            9999999999999999999999999999999999999997

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.6e-32  Score=227.17  Aligned_cols=122  Identities=70%  Similarity=1.278  Sum_probs=113.2

Q ss_pred             CCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCC
Q psy10327        168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGN  247 (289)
Q Consensus       168 ~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~  247 (289)
                      .||+|||||++.++++|+|+||||.+.||+||+||++||++.++..|+++.||||++++++|+|++...++.++...++.
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~   80 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS   80 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCCCCccccCC
Confidence            48999999999999999999999999999999999999965444349999999999999999999987788888888898


Q ss_pred             CCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        248 KFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       248 ~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .++++...+.|+.+|+||||+.++++++|||||++.++|+||
T Consensus        81 ~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ld  122 (164)
T d2z6wa1          81 RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLD  122 (164)
T ss_dssp             CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             cCCccccccccCCccEEEEecCCCCCCCcceeccccCCCccc
Confidence            898888889999999999999999999999999999999997

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=99.97  E-value=3.9e-32  Score=228.49  Aligned_cols=123  Identities=59%  Similarity=1.000  Sum_probs=114.1

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYG  246 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~  246 (289)
                      +.+.+|||||+++++++|+|+||||.+.||++|+||++||++.++..|+++.|||+++++++|+|++...++.++.+.++
T Consensus         5 ~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~   84 (182)
T d2rmca_           5 SVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYG   84 (182)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSSCCCBTTB
T ss_pred             ccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCCCCCCCcC
Confidence            44678999999999999999999999999999999999997655434999999999999999999998778888888999


Q ss_pred             CCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        247 NKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       247 ~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ..+++++....|+.+|+||||+.++++++|||||+++++++||
T Consensus        85 ~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld  127 (182)
T d2rmca_          85 ETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLD  127 (182)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CcccccccccccCCCccEehhhcCCCccCccccccccCCchhc
Confidence            8899999999999999999999999999999999999999997

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.97  E-value=1e-31  Score=222.67  Aligned_cols=123  Identities=55%  Similarity=0.929  Sum_probs=110.0

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY  245 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~  245 (289)
                      ++.+++|||||+++++++|+|+||||.+.||++|+||++||++..+.+|+++.|||++|++++|+|++...++.++...+
T Consensus         2 p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~   81 (166)
T d1xo7a_           2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIY   81 (166)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCC
Confidence            46788999999999999999999999999999999999999776666699999999999999999999877788777777


Q ss_pred             CCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        246 GNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 ~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +..++++... .|+.+|+|+||+.+||+++|||||+++++|+||
T Consensus        82 ~~~~~~~~~~-~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld  124 (166)
T d1xo7a_          82 GTRFDDENLK-IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLD  124 (166)
T ss_dssp             BSCBCCCCCC-SCCCTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             Cccccccccc-ccccccceeecccCCCCCCCeeEEccCCccccC
Confidence            7666666554 455699999999999999999999999999997

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.5e-31  Score=227.17  Aligned_cols=126  Identities=59%  Similarity=0.983  Sum_probs=116.0

Q ss_pred             CCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhcc---------CCccccCCceEEEecCcEEEeCCC
Q psy10327        163 DPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFMCQGGDF  233 (289)
Q Consensus       163 ~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~---------~g~~Y~g~~f~Rv~~~f~iq~Gd~  233 (289)
                      .|....||+|||||+|+++++|+|+||||.+.||+||+||++||+++         .++ |+++.||||++++++|+|++
T Consensus         8 ~~~~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~-y~g~~f~rv~~~~~i~~G~~   86 (195)
T d1ihga2           8 KPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLH-FKGCPFHRIIKKFMIQGGDF   86 (195)
T ss_dssp             SSSCTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSC-CTTCBEEEEETTTEEEECCT
T ss_pred             CCCCCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccc-cCCceeeEEEcCceeecCCc
Confidence            44555689999999999999999999999999999999999999754         346 99999999999999999998


Q ss_pred             CCCCCCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        234 TNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       234 ~~~~g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ....+.++...++..+++|....+|+.+|+|+|++.++++++|||||+|+++|+||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LD  142 (195)
T d1ihga2          87 SNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLD  142 (195)
T ss_dssp             TTSSSSCCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             cCCCCCCCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccC
Confidence            87778888888888899999999999999999999999999999999999999998

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=99.97  E-value=7.8e-32  Score=226.64  Aligned_cols=122  Identities=58%  Similarity=0.921  Sum_probs=113.4

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccC-CccccCCceEEEecCcEEEeCCCCCCCCCCCcccC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-GFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY  245 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~-g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~  245 (289)
                      +.+.+|||||+++++++|+|+||||.+.||+||+||++||++.+ ++ |+++.||||+|+|++|+|++..+++.++.+.+
T Consensus         4 ~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~-y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~~   82 (182)
T d1h0pa_           4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIY   82 (182)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-STTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCC-cCCceEEEEEecceEEcCCCCCCCCCCCCCCC
Confidence            34668999999999999999999999999999999999996543 35 99999999999999999999888888888899


Q ss_pred             CCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        246 GNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 ~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +..+.++.....|+.+|+++|++.++++++|||||+++++|+||
T Consensus        83 ~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ld  126 (182)
T d1h0pa_          83 GEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLD  126 (182)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCccCcccccccccCCceeeecccCCCCcCcccccccccccccc
Confidence            98899999999999999999999999999999999999999997

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=99.97  E-value=2.9e-31  Score=221.53  Aligned_cols=122  Identities=52%  Similarity=0.895  Sum_probs=113.0

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhcc---------CCccccCCceEEEecCcEEEeCCCCCCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFMCQGGDFTNHN  237 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~---------~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~  237 (289)
                      +.+++|||||+++++++|+|+||||.+.||++|+||++||++.         .++ |+++.||||++++++|+|+...++
T Consensus         1 ~~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~-Y~~~~f~Rv~~~~~iq~g~~~~~~   79 (174)
T d1a33a_           1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGD   79 (174)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccce-eCCceeeEEEeCCEEeeCCCCCCC
Confidence            4578999999999999999999999999999999999999763         357 999999999999999999998878


Q ss_pred             CCCCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        238 GTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       238 g~~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +.++.+.++....++....+|+++|+|+|++.+|++++|||||+++++|+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld  131 (174)
T d1a33a_          80 GTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLN  131 (174)
T ss_dssp             SSCCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCCCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCccccc
Confidence            8888888887778888899999999999999999999999999999999997

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=99.97  E-value=4.5e-31  Score=220.20  Aligned_cols=121  Identities=60%  Similarity=1.046  Sum_probs=110.4

Q ss_pred             CCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCc-------cccCCceEEEecCcEEEeCCCCCCCCC
Q psy10327        167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-------GYQGSSFHRIIPDFMCQGGDFTNHNGT  239 (289)
Q Consensus       167 ~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~-------~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~  239 (289)
                      ..||+|||||++.++++|+|+||||.+.||+||+||++||  +.+|       +|+++.||||++++++|+|++..+.+.
T Consensus         4 ~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~--~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~   81 (173)
T d1qoia_           4 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFC--TGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   81 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHH--HSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhh--cccccccCCCCCcCCcccceeccceeeccCCcccCCcc
Confidence            4789999999999999999999999999999999999999  5555       499999999999999999998766666


Q ss_pred             CCcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .....++.++.++.....|+++|+|+||+++|++++|||||++++.|+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ld  131 (173)
T d1qoia_          82 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLD  131 (173)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             eeecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCC
Confidence            66666777788888888899999999999999999999999999999997

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.97  E-value=5.8e-31  Score=222.02  Aligned_cols=124  Identities=56%  Similarity=0.988  Sum_probs=113.4

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCC-----ccccCCceEEEecCcEEEeCCCCCCCCCC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFMCQGGDFTNHNGTG  240 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g-----~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~  240 (289)
                      ...||+|||||+++++++|+|+||||.+.||+||+||++||+++.+     ++|+++.|||+++++++|+|+.....+.+
T Consensus        13 ~~~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~   92 (186)
T d1z81a1          13 NPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG   92 (186)
T ss_dssp             STTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCcc
Confidence            3458999999999999999999999999999999999999965432     24999999999999999999988777777


Q ss_pred             CcccCCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        241 GKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       241 ~~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ....++..++++....+|+++|+++|++.+|++++|||||+++++|+||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ld  141 (186)
T d1z81a1          93 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLD  141 (186)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGB
T ss_pred             cccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccC
Confidence            7888888899999999999999999999999999999999999999997

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=99.97  E-value=8.1e-32  Score=224.38  Aligned_cols=120  Identities=59%  Similarity=0.996  Sum_probs=82.3

Q ss_pred             CeEEEEEE-----ECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCccc
Q psy10327        170 PQVYMDIK-----IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSI  244 (289)
Q Consensus       170 ~~v~~~i~-----v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~  244 (289)
                      ++|||||+     +.+|++|+|+||||.+.||+||+||++||++..+.+|+++.||||+|++++|+|++...++.++.+.
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~   81 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSI   81 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC------------
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCCCCCcC
Confidence            58999998     6679999999999999999999999999965443359999999999999999999988888888888


Q ss_pred             CCCCCCCCcCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        245 YGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       245 ~~~~~~~e~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++..+.++...++|+++|+||||+++|++++|||||++++.|+||
T Consensus        82 ~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld  126 (171)
T d2c3ba1          82 YGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLD  126 (171)
T ss_dssp             ----------CHHHHHTCEEEEC---------CEEEECSCCTTCC
T ss_pred             CCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccC
Confidence            888888888899999999999999999999999999999999998

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-31  Score=217.94  Aligned_cols=119  Identities=50%  Similarity=0.906  Sum_probs=107.2

Q ss_pred             CCCCCCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCC
Q psy10327        162 IDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGG  241 (289)
Q Consensus       162 ~~~~~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~  241 (289)
                      ++|.+...|+|+|+     |++|+|+||||.+.||+||+||++||  +.|| |+++.||||+++|+||+||+. ..+.++
T Consensus         4 ~p~~~~~~p~v~~~-----T~~G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~   74 (166)
T d1xwna1           4 IPPDSWQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPT-GTGRGG   74 (166)
T ss_dssp             CSSCCCCCCEEEEE-----ESSCEEEEEECTTTCHHHHHHHHHHH--HHTS-STTCCEEEEETTTEEEECCST-TTTSSC
T ss_pred             CCCCCCCCCEEEEE-----ECceeEEEEEcCCCChHHHHHHHHHH--hcCC-cCceeeeEEcccEEEEeCCCC-CCCCCC
Confidence            35555667899999     88999999999999999999999999  7899 999999999999999999985 566677


Q ss_pred             cccCCCCCCCCc-CCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        242 KSIYGNKFEDEN-FILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       242 ~~~~~~~~~~e~-~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .+.++..+++|. ..+.|+++|+|+|+++++|+++|||||++++.|+||
T Consensus        75 ~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld  123 (166)
T d1xwna1          75 ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD  123 (166)
T ss_dssp             CCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTT
T ss_pred             ccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhcc
Confidence            778888888774 568899999999999999999999999999999997

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.8e-31  Score=217.09  Aligned_cols=123  Identities=38%  Similarity=0.567  Sum_probs=104.2

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCC-CcccCCCeeeeecccceeccccccccC---CcccCCCCCccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK-GFGYQGSSFHRIIPDFVSFMTKHQSLK---SRFSNLGGLAEE   76 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~-g~~Y~g~~f~rv~~~~~iq~Gd~~~~~---g~~~~~~~~~~e   76 (289)
                      |||+|+++.+|+|+||||.+.||+||+||++||++++ ++ |+++.||||+|++++|+|+....+   +.+.++..++++
T Consensus         6 ~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~   84 (161)
T d2r99a1           6 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE   84 (161)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC
T ss_pred             EEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccc-cCCcEEEEEEEeeeEEeeeccCCCCCCCccccCcccccc
Confidence            7999999999999999999999999999999998755 55 999999999999999999987543   455666555555


Q ss_pred             c------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccc
Q psy10327         77 V------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQ  124 (289)
Q Consensus        77 ~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~  124 (289)
                      .      ..|+++|+.   .+++| |||++.++|+||++|+|||||++ ||||++|+..
T Consensus        85 ~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~  143 (161)
T d2r99a1          85 NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ  143 (161)
T ss_dssp             CCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTT
T ss_pred             ccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHcc
Confidence            4      368888873   23444 88888899999999999999998 9999999764

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=99.96  E-value=5.3e-31  Score=219.61  Aligned_cols=124  Identities=32%  Similarity=0.494  Sum_probs=106.8

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccC--------CCcccCCCeeeeecccceecccccccc---CCcccC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE--------KGFGYQGSSFHRIIPDFVSFMTKHQSL---KSRFSN   69 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~--------~g~~Y~g~~f~rv~~~~~iq~Gd~~~~---~g~~~~   69 (289)
                      |||+|+++++|+|+||||.+.||+||+||++||+++        .++ |+++.||||+|++++|+|+....   ++..++
T Consensus         8 ~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~i~~G~~~~~~~~~~~~~~   86 (172)
T d2igva1           8 FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNFMIQGGDFTRGNGTGGESIY   86 (172)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             EEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccc-cCCcceeEEEecceEEcCCccCCCCCCCcccC
Confidence            799999999999999999999999999999999764        467 99999999999999999987643   356677


Q ss_pred             CCCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         70 LGGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        70 ~~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                      +..+++|.      .+|+++|+.   ..+++ |||++.+.|+||++|+|||||++ ||+|++|+...
T Consensus        87 ~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~  153 (172)
T d2igva1          87 GEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNG  153 (172)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             CCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCC
Confidence            78888875      368999984   33454 77778899999999999999999 99999997643

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=99.96  E-value=9.1e-31  Score=216.11  Aligned_cols=125  Identities=34%  Similarity=0.532  Sum_probs=106.3

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC---CcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK---SRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~---g~~~~~~~~~~e~   77 (289)
                      |||+++++++|+|+||||.+.||+||+||++||+++.+++|+++.||||+|++++|+|+.....   +.+.+...+.+|.
T Consensus         6 fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   85 (162)
T d2cfea1           6 FDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADEN   85 (162)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCcccccc
Confidence            7999999999999999999999999999999997766655999999999999999999977543   4556667777664


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                            .+|+++|+.   .+++| |||++.+.|+||++|+|||||++ ||||++|+...
T Consensus        86 ~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~  144 (162)
T d2cfea1          86 FQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEG  144 (162)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             CCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCC
Confidence                  368888872   33455 77778899999999999999998 99999997643

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-30  Score=215.13  Aligned_cols=126  Identities=33%  Similarity=0.595  Sum_probs=105.6

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc---CCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL---KSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~---~g~~~~~~~~~~e~   77 (289)
                      |||+++++++|+|+||||.+.||+||+||++||++.++..|+++.||||+|++++|+|+....   ++...++..++++.
T Consensus         7 ~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~~   86 (164)
T d2z6wa1           7 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDEN   86 (164)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCCCCccccCCcCCccc
Confidence            799999999999999999999999999999999665553499999999999999999998754   34666676666654


Q ss_pred             ------chhhhhcccC---CCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 ------DDKVLNAAFI---PFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ------~~g~~~~~~~---~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                            .+|+++|+..   ++++ |||++.+.|+||++|+|||||++ ||+|++|+..+.
T Consensus        87 ~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~  146 (164)
T d2z6wa1          87 FTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS  146 (164)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC
T ss_pred             cccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCC
Confidence                  3688999832   3455 77777889999999999999998 999999976443

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.2e-29  Score=210.09  Aligned_cols=113  Identities=28%  Similarity=0.503  Sum_probs=98.7

Q ss_pred             CCCCCeEEEEEEECcEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccC
Q psy10327        166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIY  245 (289)
Q Consensus       166 ~~~~~~v~~~i~v~~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~  245 (289)
                      ++.+++|.|+     |++|+|+||||.+.||+||+||++||  +.+| |+|+.||||+++|++|+|++....+.   ..+
T Consensus         1 ~~g~~~V~l~-----T~~G~i~ieL~~~~aP~tv~nF~~L~--~~~~-Y~g~~fhRv~~~~~iq~G~~~~~~~~---~~~   69 (166)
T d1v9ta_           1 AKGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQ---KKP   69 (166)
T ss_dssp             CCCSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEESSBCTTCCB---CCC
T ss_pred             CCCCCEEEEE-----ECCeeEEEEEeCCCChHHHHHHHHHh--hCCc-cccceeeEEEEEeecccCCcCCcccc---cCC
Confidence            3678899998     89999999999999999999999999  7889 99999999999999999998654333   345


Q ss_pred             CCCCCCCcCCCCCCCCcEEEEecCC-CCCCCceEEEEcCCCCCCC
Q psy10327        246 GNKFEDENFILKHTGPGVLSMANSG-PNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       246 ~~~~~~e~~~~~~~~~G~v~ma~~~-~~s~~sqFfI~l~~~~~LD  289 (289)
                      +..+++|.....|+.+|+|+|++.+ +++++|||||++++.|+||
T Consensus        70 ~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld  114 (166)
T d1v9ta_          70 NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLD  114 (166)
T ss_dssp             CCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGS
T ss_pred             CCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccc
Confidence            6678888776666679999999855 9999999999999999987

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.96  E-value=4.8e-30  Score=212.55  Aligned_cols=126  Identities=29%  Similarity=0.480  Sum_probs=105.2

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC---CcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK---SRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~---g~~~~~~~~~~e~   77 (289)
                      |||+++++++|+|+||||.+.||+||+||++||++..+.+|+++.|||++|++++|+|+.....   +...++..++++.
T Consensus        10 ~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~   89 (166)
T d1xo7a_          10 FDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDEN   89 (166)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCCCccccccc
Confidence            7999999999999999999999999999999997777767999999999999999999876432   3444444444443


Q ss_pred             -----chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -----DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -----~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                           .+|+++|+.   .+++| |||++.++|+||++|+|||||++ ||+|++|+..+.
T Consensus        90 ~~~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~  148 (166)
T d1xo7a_          90 LKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKT  148 (166)
T ss_dssp             CCSCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             ccccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCC
Confidence                 478899983   33455 77888899999999999999998 999999987544

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=99.96  E-value=5.8e-30  Score=215.13  Aligned_cols=126  Identities=31%  Similarity=0.473  Sum_probs=107.0

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc---CCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL---KSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~---~g~~~~~~~~~~e~   77 (289)
                      |||+|+++++|+|+||||.+.||+||+||++||+++++.+|+++.|||++|++++|+|+....   ++.++++..++++.
T Consensus        12 ~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~   91 (182)
T d2rmca_          12 FDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDEN   91 (182)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCCCCCCCcCCcccccc
Confidence            799999999999999999999999999999999876654599999999999999999997643   35666777776664


Q ss_pred             ------chhhhhcccC---CCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 ------DDKVLNAAFI---PFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ------~~g~~~~~~~---~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                            .+|+++|+..   +++| |||++.+.++||++|+|||||++ ||+|++|+..+.
T Consensus        92 ~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~  151 (182)
T d2rmca_          92 FKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQAT  151 (182)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCc
Confidence                  3788999842   3444 78888899999999999999998 999999987544

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.96  E-value=3.5e-30  Score=214.20  Aligned_cols=124  Identities=31%  Similarity=0.471  Sum_probs=105.5

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccC-------CCcccCCCeeeeecccceeccccccccC---CcccCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------KGFGYQGSSFHRIIPDFVSFMTKHQSLK---SRFSNL   70 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~-------~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~---g~~~~~   70 (289)
                      |||+|++|++|+|+||||.+.||+||+||++||+++       .++ |+++.||||+|++++|+|+.....   +...++
T Consensus         8 ~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~g~~~~~~~~~~~~~~~   86 (170)
T d1qnga_           8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLH-YKNSIFHRIIPQFMCQGGDITNGNGSGGESIYG   86 (170)
T ss_dssp             EEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEEC-CTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred             EEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCc-cCcccceEEEeCceEEecCccCCCCCCCcccCC
Confidence            799999999999999999999999999999999753       467 999999999999999999876543   456667


Q ss_pred             CCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         71 GGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        71 ~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                      ..++++.      .+|+++|+.   .++|| |||++.+.|+||++|+|||||++ ||+|++|+...
T Consensus        87 ~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~  152 (170)
T d1qnga_          87 RSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEG  152 (170)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC
T ss_pred             CccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcC
Confidence            6676653      469999983   34555 78888899999999999999998 99999997643

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=99.96  E-value=4.9e-30  Score=215.57  Aligned_cols=126  Identities=29%  Similarity=0.419  Sum_probs=106.1

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc---CCcccCCCCCcccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL---KSRFSNLGGLAEEV   77 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~---~g~~~~~~~~~~e~   77 (289)
                      |||+|+++++|+|+||||.+.||+||+||++||++.++..|+++.|||++|+|++|+|+....   ++.+.++..+.++.
T Consensus        11 ~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~~~~~~~~~~   90 (182)
T d1h0pa_          11 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADEN   90 (182)
T ss_dssp             EEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred             EEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCCCCCCCCCCCCCCCccCccc
Confidence            799999999999999999999999999999999664432399999999999999999997654   34566666666654


Q ss_pred             ------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 ------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                            ..|+++|+.   .++|| |||++.+.|+||++|+|||||++ ||+|++|+..+.
T Consensus        91 ~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~  150 (182)
T d1h0pa_          91 FKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEK  150 (182)
T ss_dssp             CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCE
T ss_pred             ccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCC
Confidence                  368888883   34555 77778899999999999999998 999999988554

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-29  Score=206.13  Aligned_cols=105  Identities=51%  Similarity=0.812  Sum_probs=93.9

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCc-CCCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~-~~~~~~  259 (289)
                      |++|+|+||||.+.||++|+||++||  +.+| |+++.||||+++|+||+||+... +.++...++..++.|. ..++|+
T Consensus         7 T~~G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e~~~~~~~~   82 (159)
T d2ok3a1           7 TDVGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDEYSEYLKHN   82 (159)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCCCCTTCCSC
T ss_pred             eCCeEEEEEEcCCCChHHHHHHHHHH--hhhc-ccceeEecccCCeEEEeCCcccc-CCCCcccCCCccccccccCCCCC
Confidence            99999999999999999999999999  7788 99999999999999999998643 3445556677777664 468999


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+||||+.++++++|||||++++.|+||
T Consensus        83 ~~G~lsma~~~~~s~~sqFfIt~~~~p~ld  112 (159)
T d2ok3a1          83 VRGVVSMANNGPNTNGSQFFITYGKQPHLD  112 (159)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCeEEEEeeCCCCCcCcceEeeeccCcccc
Confidence            999999999999999999999999999997

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=99.96  E-value=2.3e-29  Score=209.90  Aligned_cols=125  Identities=26%  Similarity=0.392  Sum_probs=103.0

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccC---------CCcccCCCeeeeecccceeccccccccC---Cccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFVSFMTKHQSLK---SRFS   68 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~---------~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~---g~~~   68 (289)
                      |||+|+++.+|+|+||||.+.||+||+||++||+++         .++ |+++.||||+|++++|+|+.....   +.+.
T Consensus         8 ~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~-Y~~~~f~Rv~~~~~iq~g~~~~~~~~~~~~~   86 (174)
T d1a33a_           8 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDGTGGESI   86 (174)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCTTTSSSSCCCCT
T ss_pred             EEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccce-eCCceeeEEEeCCEEeeCCCCCCCCCCCCCc
Confidence            799999999999999999999999999999999764         356 999999999999999999986543   3455


Q ss_pred             CCCCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         69 NLGGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        69 ~~~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      ++....++.      ..|+++|+.   .++++ |||++.+.|+||++|+|||||++ ||||++|+..+.
T Consensus        87 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t  155 (174)
T d1a33a_          87 YGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKT  155 (174)
T ss_dssp             TSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCc
Confidence            544444433      357777872   33444 88888899999999999999998 999999977544

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.95  E-value=1e-28  Score=202.22  Aligned_cols=105  Identities=49%  Similarity=0.818  Sum_probs=96.6

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcC-CCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENF-ILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~-~~~~~  259 (289)
                      |++|+|+||||.+.||++|+||++||  +.|| |+|+.||||++++++|+||+. +.+.++.+.++..++++.. .+.|.
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~~~   83 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDHLNHS   83 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTTBCSS
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHh--hCCc-cccceeeeeeecceeeccCCC-CCCcCCcccCCCccccccccccccC
Confidence            99999999999999999999999999  7789 999999999999999999986 4556677888888888765 57888


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+++|++.++++++|||||++++.|+||
T Consensus        84 ~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld  113 (155)
T d2fu0a1          84 KPFMVSMANCGPNTNGSQFFITTVPCPWLD  113 (155)
T ss_dssp             SSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CccEEEecccCCCCCCccceecccCccccc
Confidence            899999999999999999999999999997

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-28  Score=206.65  Aligned_cols=105  Identities=50%  Similarity=0.833  Sum_probs=97.4

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCc-CCCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~-~~~~~~  259 (289)
                      |++|+|+||||.+.||++|+||++||  +.++ |+|+.||||+|++++|+|++. .++.++.+.++..+++|. ..++|+
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~--~~~~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~~~~l~~~   82 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSHT   82 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCCCTTCCSC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHH--hcCC-cCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCccccccCCC
Confidence            99999999999999999999999999  7888 999999999999999999986 467777888888888885 468999


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+|||+++++++++|||||+++++|+||
T Consensus        83 ~~G~lsma~~~~~s~~sqF~It~~~~~~ld  112 (178)
T d1zkca1          83 GRGILSMANSGPNSNRSQFFITFRSCAYLD  112 (178)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCeEEEEeecCCCCccceeeccccCCcccC
Confidence            999999999999999999999999999987

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.4e-29  Score=212.54  Aligned_cols=124  Identities=32%  Similarity=0.493  Sum_probs=103.8

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccC---------CCcccCCCeeeeecccceecccccccc---CCccc
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE---------KGFGYQGSSFHRIIPDFVSFMTKHQSL---KSRFS   68 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~---------~g~~Y~g~~f~rv~~~~~iq~Gd~~~~---~g~~~   68 (289)
                      |||+|+++.+|+|+||||.+.||+||+||++||+++         .++ |+++.||||+|++++|+|+....   ++...
T Consensus        19 ~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~-y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~   97 (195)
T d1ihga2          19 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLH-FKGCPFHRIIKKFMIQGGDFSNQNGTGGESI   97 (195)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSC-CTTCBEEEEETTTEEEECCTTTSSSSCCCBT
T ss_pred             EEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccc-cCCceeeEEEcCceeecCCccCCCCCCCccC
Confidence            799999999999999999999999999999999754         345 99999999999999999987643   24555


Q ss_pred             CCCCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         69 NLGGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        69 ~~~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                      ++..+++|.      ..|+++|+.   ..+|| |||++.+.|+||++|+|||||++ ||||++|+...
T Consensus        98 ~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~  165 (195)
T d1ihga2          98 YGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVE  165 (195)
T ss_dssp             TBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             CCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCC
Confidence            666666654      368888873   34555 77778899999999999999998 99999997633

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=99.95  E-value=4.7e-29  Score=207.80  Aligned_cols=124  Identities=36%  Similarity=0.521  Sum_probs=103.1

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCc-------ccCCCeeeeecccceeccccccccC---CcccCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGF-------GYQGSSFHRIIPDFVSFMTKHQSLK---SRFSNL   70 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~-------~Y~g~~f~rv~~~~~iq~Gd~~~~~---g~~~~~   70 (289)
                      |||+|+++++|+|+||||.+.||+||+||++||  +.+|       +|+++.|||++|++++|+|+...+.   ....+.
T Consensus        11 ~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~--~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~~~~~~~   88 (173)
T d1qoia_          11 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFC--TGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYR   88 (173)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHH--HSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTS
T ss_pred             EEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhh--cccccccCCCCCcCCcccceeccceeeccCCcccCCcceeecccC
Confidence            799999999999999999999999999999999  5554       5999999999999999999976543   233444


Q ss_pred             CCCcccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         71 GGLAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        71 ~~~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      ..+.++.      .+|+++|+.   .+++| |||++.+.|+||++|+|||||++ ||+|++|+..+.
T Consensus        89 ~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t  155 (173)
T d1qoia_          89 GPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPT  155 (173)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             CcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCc
Confidence            5555443      368999984   34555 77778899999999999999998 999999987544

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.95  E-value=4.3e-29  Score=204.47  Aligned_cols=119  Identities=21%  Similarity=0.279  Sum_probs=100.4

Q ss_pred             eCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCccccc----
Q psy10327          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEVD----   78 (289)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~~----   78 (289)
                      +-.|++|+|+||||.+.||+||+||++||  +.|| |+|+.||||+|++++|+||+...  ++.+.++..+++|..    
T Consensus         5 ~i~T~~G~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~   81 (155)
T d2fu0a1           5 IIYTTMGDIHISLFYKECKKTVQNFSVHS--INGY-YNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHLN   81 (155)
T ss_dssp             EEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTBC
T ss_pred             EEEEcccEEEEEEcCCCChHHHHHHhhHh--hCCc-cccceeeeeeecceeeccCCCCCCcCCcccCCCccccccccccc
Confidence            45689999999999999999999999999  7888 99999999999999999998754  467788888888763    


Q ss_pred             ---hhhhhcc---cCCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         79 ---DKVLNAA---FIPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        79 ---~g~~~~~---~~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                         .++++|+   ..+++| |||++.+.|+||++|+|||||++ ||+|++|+..+.
T Consensus        82 ~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t  137 (155)
T d2fu0a1          82 HSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRT  137 (155)
T ss_dssp             SSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             cCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCC
Confidence               2455555   234455 77888899999999999999998 999999987543

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.95  E-value=1.5e-28  Score=204.00  Aligned_cols=105  Identities=51%  Similarity=0.867  Sum_probs=94.6

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCc-CCCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDEN-FILKHT  259 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~-~~~~~~  259 (289)
                      |++|+|+||||.+.||++|+||++||  +.|| |+++.||||++++++|+|++.. .+.++.+.....+++|. ..++|.
T Consensus        23 T~~G~i~IeL~~d~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~g~~~~-~~~~~~~~~~~~~~~e~~~~l~h~   98 (169)
T d2b71a1          23 TNLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHT   98 (169)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETTS-SSSCCCBTTBSCBCCCCCTTCCCC
T ss_pred             eCceeEEEEEeCCCCcHHHHHHHHHh--hCCc-cceeeeccccceeeEecccccc-ccCCCccccccccccccccccCCC
Confidence            99999999999999999999999999  8899 9999999999999999999864 44455666666777774 468999


Q ss_pred             CCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        260 GPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       260 ~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      ++|+|+|++++|++++|||||+++++|+||
T Consensus        99 ~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld  128 (169)
T d2b71a1          99 GAGILSMSNNGPNTNSSQFFITLAPLPHLD  128 (169)
T ss_dssp             STTEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             CcEEEEhhhCCCCCCCCEEEEecCCcchhh
Confidence            999999999999999999999999999997

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-29  Score=205.34  Aligned_cols=121  Identities=21%  Similarity=0.297  Sum_probs=100.4

Q ss_pred             ceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC--CcccCCCCCcccc--
Q psy10327          2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK--SRFSNLGGLAEEV--   77 (289)
Q Consensus         2 di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~--g~~~~~~~~~~e~--   77 (289)
                      .|.+ .|++|+|+||||.+.||+||+||++||  +.|+ |+++.||||+|+|+||+||....+  +...++..++.|.  
T Consensus         2 sV~~-~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~e~~~   77 (159)
T d2ok3a1           2 SVTL-HTDVGDIKIEVFCERTPKTCENFLALC--ASNY-YNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSE   77 (159)
T ss_dssp             EEEE-EETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCT
T ss_pred             EEEE-EeCCeEEEEEEcCCCChHHHHHHHHHH--hhhc-ccceeEecccCCeEEEeCCccccCCCCcccCCCcccccccc
Confidence            3444 578999999999999999999999999  7788 999999999999999999976543  4556666666553  


Q ss_pred             -----chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -----DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -----~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                           .+|+++|+.   .++|| |||++.+.|+||++|+|||||++ |++|++|+..+.
T Consensus        78 ~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~  136 (159)
T d2ok3a1          78 YLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPV  136 (159)
T ss_dssp             TCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCB
T ss_pred             CCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcC
Confidence                 368888873   34455 78888899999999999999998 999999986443

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.95  E-value=1.6e-28  Score=203.91  Aligned_cols=117  Identities=25%  Similarity=0.381  Sum_probs=98.7

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC--CcccCCCCCcccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK--SRFSNLGGLAEEV-------   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~--g~~~~~~~~~~e~-------   77 (289)
                      .|++|+|+||||.+.||+||+||++||  +.|| |+++.|||++|++++|||+....+  +.+++...+++|.       
T Consensus        22 ~T~~G~i~IeL~~d~aP~tv~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~e~~~~l~h~   98 (169)
T d2b71a1          22 YTNLGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHT   98 (169)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTTCCCC
T ss_pred             EeCceeEEEEEeCCCCcHHHHHHHHHh--hCCc-cceeeeccccceeeEeccccccccCCCccccccccccccccccCCC
Confidence            478999999999999999999999999  8999 999999999999999999977653  4556666666664       


Q ss_pred             chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      ..|+++|+.   .+++| |||++.+.|+||++|+|||||++ ||+|++|+..+.
T Consensus        99 ~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~  152 (169)
T d2b71a1          99 GAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQT  152 (169)
T ss_dssp             STTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             CcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCC
Confidence            257778873   33444 77888899999999999999998 999999987554

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.2e-28  Score=199.72  Aligned_cols=106  Identities=43%  Similarity=0.638  Sum_probs=91.6

Q ss_pred             cEEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCC-CcCCCCC
Q psy10327        180 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFED-ENFILKH  258 (289)
Q Consensus       180 ~t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~-e~~~~~~  258 (289)
                      +|++|+|+||||.+.||+||+||++||  +.++ |+|+.|||++++|++|+|++......+.....+ .+.+ +...++|
T Consensus        15 ~T~~G~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~   90 (164)
T d2a2na1          15 HTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGG-EFEDEFHSTLRH   90 (164)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSS-CBCCCCCTTCCS
T ss_pred             EeceeEEEEEEcCCCChHHHHHHHHHH--hCCC-cccceeeEEeeeeeEeecccccccCCCceeeec-cccccccccccc
Confidence            399999999999999999999999999  8899 999999999999999999986543333333333 4444 4567899


Q ss_pred             CCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        259 TGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       259 ~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      +++|+++|++.++++++|||||++++.|+||
T Consensus        91 ~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld  121 (164)
T d2a2na1          91 DRPYTLSMANAGSNTNGSQFFITVVPTPWLD  121 (164)
T ss_dssp             CSSSEEEECCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CccceeehhhcCCCCCcccceecccCccccc
Confidence            9999999999999999999999999999997

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.94  E-value=1.8e-28  Score=206.54  Aligned_cols=125  Identities=29%  Similarity=0.418  Sum_probs=103.3

Q ss_pred             CceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCC-----cccCCCeeeeecccceeccccccccC---CcccCCCC
Q psy10327          1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFVSFMTKHQSLK---SRFSNLGG   72 (289)
Q Consensus         1 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g-----~~Y~g~~f~rv~~~~~iq~Gd~~~~~---g~~~~~~~   72 (289)
                      |||+++++.+|+|+||||.|.||+||+||++||+++.+     ++|+|+.|||++|++++|+|+.....   ...+++..
T Consensus        21 ~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~  100 (186)
T d1z81a1          21 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEK  100 (186)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSC
T ss_pred             EEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCcccccccCCc
Confidence            69999999999999999999999999999999966442     24999999999999999999876442   35556666


Q ss_pred             Ccccc------chhhhhcc---cCCCCC-eEEecCCCCCCCCCCCccceEE-E--eccccCccccc
Q psy10327         73 LAEEV------DDKVLNAA---FIPFGD-LVDIQMPLDYETEKHQLFGRII-R--VNLAKPQKVQQ  125 (289)
Q Consensus        73 ~~~e~------~~g~~~~~---~~~~Gs-~fii~~~~p~ldg~~~vFG~Vi-~--mdvv~~i~~~~  125 (289)
                      ++++.      ..|+++|+   ..+++| |||++.+.|+||++|+|||||+ +  ||+|++|+..+
T Consensus       101 ~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~  166 (186)
T d1z81a1         101 FDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVS  166 (186)
T ss_dssp             CCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSC
T ss_pred             ccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccC
Confidence            66654      36888887   234555 8888889999999999999999 3  99999997643

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.9e-29  Score=205.50  Aligned_cols=117  Identities=25%  Similarity=0.436  Sum_probs=100.3

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV-------   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~-------   77 (289)
                      .|++|+|+||||.+.||+||+||++||  +.|| |+++.|||++|+|++|+||+...  ++.+.++..+++|.       
T Consensus        17 ~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~g~-Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~e~~~~~~~~   93 (166)
T d1xwna1          17 ETSMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFT   93 (166)
T ss_dssp             EESSCEEEEEECTTTCHHHHHHHHHHH--HHTS-STTCCEEEEETTTEEEECCSTTTTSSCCCSSCSCCCCCCCTTCCSC
T ss_pred             EECceeEEEEEcCCCChHHHHHHHHHH--hcCC-cCceeeeEEcccEEEEeCCCCCCCCCCccCCCCccccccCCCCCCC
Confidence            578999999999999999999999999  8899 99999999999999999998654  35667777777764       


Q ss_pred             chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 ~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .+|+++|+.   .++++ |||++.+.|+||++|+|||||++ ||||++|+..+.
T Consensus        94 ~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t  147 (166)
T d1xwna1          94 GAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVET  147 (166)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCB
T ss_pred             CCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCC
Confidence            268888873   33444 78888899999999999999998 999999987554

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=99.94  E-value=2.3e-28  Score=203.33  Aligned_cols=126  Identities=29%  Similarity=0.437  Sum_probs=89.7

Q ss_pred             Ccee-----eCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC---CcccCCCC
Q psy10327          1 MDIK-----IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK---SRFSNLGG   72 (289)
Q Consensus         1 ~di~-----i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~---g~~~~~~~   72 (289)
                      |||+     +..|++|+|+||||.+.||+||+||++||++..+.+|+++.|||++|++++|+|+.....   +...++..
T Consensus         6 ~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~   85 (171)
T d2c3ba1           6 FDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDK   85 (171)
T ss_dssp             EEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------------
T ss_pred             EeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCCCCCcCCCCc
Confidence            5665     777999999999999999999999999996544445999999999999999999976543   34445555


Q ss_pred             Ccccc------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEE--E-eccccCcccccC
Q psy10327         73 LAEEV------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRII--R-VNLAKPQKVQQT  126 (289)
Q Consensus        73 ~~~e~------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi--~-mdvv~~i~~~~~  126 (289)
                      +.++.      .+|+++|+.   .++|| |||++.+.|+||++|+|||||+  + ||||++|+....
T Consensus        86 ~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t  152 (171)
T d2c3ba1          86 FADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGS  152 (171)
T ss_dssp             ------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCC
T ss_pred             cccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCC
Confidence            55443      368888883   34555 7788889999999999999999  4 999999976443

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.8e-28  Score=200.62  Aligned_cols=117  Identities=20%  Similarity=0.225  Sum_probs=96.1

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCcccc------chh
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEV------DDK   80 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~------~~g   80 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.|+ |+|+.||||+|+|++|+|+.....+...++..+++|.      .+|
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~l~--~~g~-Y~g~~fhrv~~~~~iq~G~~~~~~~~~~~~~~~~~e~~~~~~h~~g   81 (164)
T d1lopa_           5 HTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRG   81 (164)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTTEECCCCCCBCCCCCSSCCCCTT
T ss_pred             EeCCeEEEEEEcCCCCHHHHHHHHHHH--HccC-cCCceeeEEcCCceeeeeccccCCcCCccCCCccccccccccceee
Confidence            488999999999999999999999999  8999 9999999999999999999876655555666677764      356


Q ss_pred             hhhccc----CCCCC-eEEecCC--------CCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         81 VLNAAF----IPFGD-LVDIQMP--------LDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        81 ~~~~~~----~~~Gs-~fii~~~--------~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      .++|+.    .++|| |||++.+        .|+||++|+|||||++ ||+|++|+..+.
T Consensus        82 ~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t  141 (164)
T d1lopa_          82 TLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVAT  141 (164)
T ss_dssp             EEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             EEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCc
Confidence            677762    34666 5555443        3789999999999998 999999987443

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=8.1e-28  Score=199.01  Aligned_cols=118  Identities=19%  Similarity=0.279  Sum_probs=99.0

Q ss_pred             CceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccCCcccCCCCCccccc------h
Q psy10327          6 GKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVD------D   79 (289)
Q Consensus         6 ~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~~~~~e~~------~   79 (289)
                      -.|+.|+|+||||.+.||+||+||++||  +.+| |+|+.||||+|+|++|+|+.....+...++..+++|..      +
T Consensus         9 l~T~~G~i~ieL~~~~aP~tv~nF~~L~--~~~~-Y~g~~fhRv~~~~~iq~G~~~~~~~~~~~~~~~~~e~~~~~~~~r   85 (166)
T d1v9ta_           9 LTTSAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTR   85 (166)
T ss_dssp             EEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBEEEEETTTEEEESSBCTTCCBCCCCCCBCCCGGGSCCCCT
T ss_pred             EEECCeeEEEEEeCCCChHHHHHHHHHh--hCCc-cccceeeEEEEEeecccCCcCCcccccCCCCCccccccccccccC
Confidence            3578999999999999999999999999  8889 99999999999999999998877766677777777753      5


Q ss_pred             hhhhccc----CCCCC-eEEecCCCCCCCCC-----CCccceEEE-eccccCcccccC
Q psy10327         80 KVLNAAF----IPFGD-LVDIQMPLDYETEK-----HQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        80 g~~~~~~----~~~Gs-~fii~~~~p~ldg~-----~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                      |.++|+.    .+++| |||++.+.|+||++     |+|||||++ ||+|++|+..+.
T Consensus        86 g~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~  143 (166)
T d1v9ta_          86 GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             TEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             CEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcc
Confidence            7777763    24555 67777788888854     799999998 999999986443

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.3e-28  Score=200.81  Aligned_cols=116  Identities=25%  Similarity=0.396  Sum_probs=99.4

Q ss_pred             ceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceecccccccc--CCcccCCCCCcccc-------
Q psy10327          7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSL--KSRFSNLGGLAEEV-------   77 (289)
Q Consensus         7 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~--~g~~~~~~~~~~e~-------   77 (289)
                      .|+.|+|+||||.+.||+||+||++||  +.++ |+|+.|||++|++++|+||....  ++.+.++..+++|.       
T Consensus         6 ~T~~G~i~IeL~~~~aP~tv~nF~~L~--~~~~-Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~E~~~~l~~~   82 (178)
T d1zkca1           6 HTNKGDLNLELHCDLTPKTCENFIRLC--KKHY-YDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSHT   82 (178)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCCCCTTCCSC
T ss_pred             EeCCEEEEEEEcCCCChHHHHHHHHHH--hcCC-cCceEeeeccceeEEecCCccCCCCCCcccCCCCcCCccccccCCC
Confidence            478999999999999999999999999  8888 99999999999999999997654  35667777777774       


Q ss_pred             chhhhhcccC---CCCC-eEEecCCCCCCCCCCCccceEEE-eccccCccccc
Q psy10327         78 DDKVLNAAFI---PFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQ  125 (289)
Q Consensus        78 ~~g~~~~~~~---~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~  125 (289)
                      .+|+++|+..   ++|| |||++.+.|+||++|+|||||++ ||+|++|+..+
T Consensus        83 ~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~  135 (178)
T d1zkca1          83 GRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVE  135 (178)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSC
T ss_pred             CCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCC
Confidence            2688888732   3444 77778899999999999999998 99999998643

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4.1e-27  Score=194.35  Aligned_cols=100  Identities=31%  Similarity=0.530  Sum_probs=85.5

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCCccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCCCCCCCcCCCCCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTG  260 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~~~~~e~~~~~~~~  260 (289)
                      |+.|+|+||||.+.||+||+||++||  +.|| |+|+.||||+++|++|+|++....+   ...++.++++|.....++.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~--~~g~-Y~g~~fhrv~~~~~iq~G~~~~~~~---~~~~~~~~~~e~~~~~~h~   79 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMK---QKATKEPIKNEANNGLKNT   79 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH--HTTT-TTTEECCEEETTTEEEESSEETTTE---ECCCCCCBCCCCCSSCCCC
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHH--HccC-cCCceeeEEcCCceeeeeccccCCc---CCccCCCccccccccccce
Confidence            99999999999999999999999999  8899 9999999999999999998754322   2334667888766555566


Q ss_pred             CcEEEEecC-CCCCCCceEEEEcCCCC
Q psy10327        261 PGVLSMANS-GPNTNGSQFFLCTTKTE  286 (289)
Q Consensus       261 ~G~v~ma~~-~~~s~~sqFfI~l~~~~  286 (289)
                      +|.|+|+++ +|++++|||||++.+.+
T Consensus        80 ~g~l~~~~~~~~~~~~sqFfi~~~~~~  106 (164)
T d1lopa_          80 RGTLAMARTQAPHSATAQFFINVVDND  106 (164)
T ss_dssp             TTEEEECCCSSTTCBCSCEEEESSCCG
T ss_pred             eeEEEEeccCCCCCccceeeeeccccc
Confidence            899999986 59999999999998763

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-27  Score=195.92  Aligned_cols=122  Identities=25%  Similarity=0.358  Sum_probs=97.5

Q ss_pred             ceeeCceeeeEEEEEEcCCCChHHHHHHHHhhccCCCcccCCCeeeeecccceeccccccccC--CcccCCCCCcccc--
Q psy10327          2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLK--SRFSNLGGLAEEV--   77 (289)
Q Consensus         2 di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g~~Y~g~~f~rv~~~~~iq~Gd~~~~~--g~~~~~~~~~~e~--   77 (289)
                      +..+..|++|+|+||||.+.||+||+||++||  +.|+ |+|+.|||++|++++|+|++....  +.......+.++.  
T Consensus        10 ~~a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~--~~g~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~   86 (164)
T d2a2na1          10 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNGY-YNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHS   86 (164)
T ss_dssp             SEEEEEETTEEEEEEECTTTCHHHHHHHHHHH--HTTT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCT
T ss_pred             CEEEEEeceeEEEEEEcCCCChHHHHHHHHHH--hCCC-cccceeeEEeeeeeEeecccccccCCCceeeeccccccccc
Confidence            45666799999999999999999999999999  8899 999999999999999999976543  2222233344432  


Q ss_pred             -----chhhhhcc---cCCCCC-eEEecCCCCCCCCCCCccceEEE-eccccCcccccC
Q psy10327         78 -----DDKVLNAA---FIPFGD-LVDIQMPLDYETEKHQLFGRIIR-VNLAKPQKVQQT  126 (289)
Q Consensus        78 -----~~g~~~~~---~~~~Gs-~fii~~~~p~ldg~~~vFG~Vi~-mdvv~~i~~~~~  126 (289)
                           ..++++|+   ..++|| |||++.+.|+||++|+|||||++ ||+|++|+..+.
T Consensus        87 ~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~  145 (164)
T d2a2na1          87 TLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKV  145 (164)
T ss_dssp             TCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCB
T ss_pred             ccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCc
Confidence                 24666666   234555 77778899999999999999998 999999976443

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=1.9e-26  Score=191.55  Aligned_cols=104  Identities=47%  Similarity=0.715  Sum_probs=88.0

Q ss_pred             EEeeEEEEEEecCCCchhHHHHHHhhhccCC-------------ccccCCceEEEecCcEEEeCCCCCCCCCCCcccCCC
Q psy10327        181 QEVGRITIQLRYDLVPRTAENFRCLCTHEKG-------------FGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGN  247 (289)
Q Consensus       181 t~~G~i~ieL~~~~aP~~~~nF~~L~~g~~g-------------~~Y~g~~f~Rv~~~f~iq~Gd~~~~~g~~~~~~~~~  247 (289)
                      |+.|+|+||||.+.||+||+||++||++.++             | |+++.|||+++++++|+|++... +.++.   ..
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~g~~~~~-~~~~~---~~   84 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPTGT-GRGGP---GY   84 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTTSS-SSCCS---SC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCce-ECCeecccccCCceeEcccccCC-CCCCc---cc
Confidence            9999999999999999999999999975432             5 99999999999999999998632 22221   22


Q ss_pred             CCCCC-cCCCCCCCCcEEEEecCCCCCCCceEEEEcCCCCCCC
Q psy10327        248 KFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWNI  289 (289)
Q Consensus       248 ~~~~e-~~~~~~~~~G~v~ma~~~~~s~~sqFfI~l~~~~~LD  289 (289)
                      .+++| ...++|+++|+|+|++.+||+++|||||++++.|+||
T Consensus        85 ~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld  127 (171)
T d1w74a_          85 KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN  127 (171)
T ss_dssp             CBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGT
T ss_pred             ccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccc
Confidence            34444 5578999999999999999999999999999999998

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=5.9e-27  Score=194.64  Aligned_cols=120  Identities=23%  Similarity=0.272  Sum_probs=94.4

Q ss_pred             eCceeeeEEEEEEcCCCChHHHHHHHHhhccCCC-------------cccCCCeeeeecccceeccccccccCCcccCCC
Q psy10327          5 IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-------------FGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLG   71 (289)
Q Consensus         5 i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~g~~g-------------~~Y~g~~f~rv~~~~~iq~Gd~~~~~g~~~~~~   71 (289)
                      +-.|+.|+|+||||.+.||+||+||++||++.++             + |+++.|||++|++++|+|++...+....+ .
T Consensus         7 ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~-Y~g~~~~rv~~~~~iq~g~~~~~~~~~~~-~   84 (171)
T d1w74a_           7 TLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGGDPTGTGRGGPG-Y   84 (171)
T ss_dssp             EEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEECCTTSSSSCCSS-C
T ss_pred             EEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCce-ECCeecccccCCceeEcccccCCCCCCcc-c
Confidence            3468999999999999999999999999975532             4 99999999999999999998765422211 1


Q ss_pred             CCcccc-------chhhhhccc---CCCCC-eEEecCCCCCCCCCCCccceEE--E-eccccCcccccC
Q psy10327         72 GLAEEV-------DDKVLNAAF---IPFGD-LVDIQMPLDYETEKHQLFGRII--R-VNLAKPQKVQQT  126 (289)
Q Consensus        72 ~~~~e~-------~~g~~~~~~---~~~Gs-~fii~~~~p~ldg~~~vFG~Vi--~-mdvv~~i~~~~~  126 (289)
                      .+++|.       ..|+++|+.   .++|+ |||++.+.|+||++|+|||||+  + ||||++|+..+.
T Consensus        85 ~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~  153 (171)
T d1w74a_          85 KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT  153 (171)
T ss_dssp             CBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCB
T ss_pred             ccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCc
Confidence            222222       357787773   34555 7888889999999999999999  4 999999987544