Psyllid ID: psy10370
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 280 | ||||||
| 383856386 | 404 | PREDICTED: MOSC domain-containing protei | 0.917 | 0.636 | 0.322 | 4e-38 | |
| 380030626 | 676 | PREDICTED: uncharacterized protein LOC10 | 0.928 | 0.384 | 0.307 | 1e-37 | |
| 350407693 | 628 | PREDICTED: hypothetical protein LOC10074 | 0.928 | 0.414 | 0.311 | 6e-37 | |
| 328778924 | 415 | PREDICTED: MOSC domain-containing protei | 0.928 | 0.626 | 0.303 | 7e-37 | |
| 312381649 | 365 | hypothetical protein AND_05998 [Anophele | 0.914 | 0.701 | 0.334 | 8e-37 | |
| 170051408 | 249 | MOSC domain-containing protein 2, mitoch | 0.860 | 0.967 | 0.336 | 1e-36 | |
| 332374952 | 349 | unknown [Dendroctonus ponderosae] | 0.9 | 0.722 | 0.340 | 1e-36 | |
| 91080253 | 347 | PREDICTED: similar to molybdopterin cofa | 0.928 | 0.749 | 0.317 | 1e-36 | |
| 347964316 | 340 | AGAP000699-PB [Anopheles gambiae str. PE | 0.914 | 0.752 | 0.321 | 2e-36 | |
| 347964314 | 347 | AGAP000699-PA [Anopheles gambiae str. PE | 0.914 | 0.737 | 0.321 | 3e-36 |
| >gi|383856386|ref|XP_003703690.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 147/273 (53%), Gaps = 16/273 (5%)
Query: 7 LEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQV----A 62
L DR F+++NE+ F + ++F L+LI + + P ++ V
Sbjct: 132 LRDRMFLVYNEETGRFQTGRQFPTLILISLSAVDESRVKLEALGMP---RVVFHVPESSG 188
Query: 63 DILQTSHTKSFTLYVDEVLEAFDCGDLASDWFAKYLLNQSDRSIRLGLSTNRRRSIGDNY 122
D ++ K ++ E ++ DCG A++W +++L S +RLG + R +
Sbjct: 189 DDVEAVQCK---MWWGEPVKCIDCGPEAAEWLSRFLTGTSS-GLRLGYTMMDNRDLFKEP 244
Query: 123 LRKYTTVYDNVNDEDIGVYADMTSYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVD 182
+K+T VY + +ED G++ D+ SYM++ S+ LN+K+ + V LQFR NI+V
Sbjct: 245 WKKFTEVYSTLRNEDTGLFCDLASYMLMTVQSVEHLNQKLE----QPVPALQFRPNILVS 300
Query: 183 GPPSYAEDTWDWVRFNSDVITRQVKPCTRCILTTVHPDTGRKQPDSQPLKMLQMYRAVPD 242
+++ED W+W+R + R VKPCTRC V+PD+G D +PLK L+ +R D
Sbjct: 301 TKEAFSEDDWEWIRIGDRAVIRNVKPCTRCKFVLVNPDSGVVD-DEEPLKTLKTFRQHTD 359
Query: 243 LERRKVENFAPMFGVYMGVHRTGYVNVGDDVYV 275
+R +E AP+ G+Y G++ G VN+ DDV+V
Sbjct: 360 PDRISLEGTAPVMGIYCGLYVPGKVNIDDDVFV 392
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380030626|ref|XP_003698944.1| PREDICTED: uncharacterized protein LOC100869847 [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|350407693|ref|XP_003488163.1| PREDICTED: hypothetical protein LOC100741218 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|328778924|ref|XP_003249565.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
| >gi|312381649|gb|EFR27353.1| hypothetical protein AND_05998 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
| >gi|170051408|ref|XP_001861749.1| MOSC domain-containing protein 2, mitochondrial [Culex quinquefasciatus] gi|167872686|gb|EDS36069.1| MOSC domain-containing protein 2, mitochondrial [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
| >gi|332374952|gb|AEE62617.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
| >gi|91080253|ref|XP_973258.1| PREDICTED: similar to molybdopterin cofactor sulfurase (mosc) [Tribolium castaneum] gi|270005692|gb|EFA02140.1| hypothetical protein TcasGA2_TC007790 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|347964316|ref|XP_003437067.1| AGAP000699-PB [Anopheles gambiae str. PEST] gi|333467473|gb|EGK96570.1| AGAP000699-PB [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
| >gi|347964314|ref|XP_311229.5| AGAP000699-PA [Anopheles gambiae str. PEST] gi|333467472|gb|EAA06867.5| AGAP000699-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 280 | ||||||
| WB|WBGene00009049 | 339 | F22B8.7 [Caenorhabditis elegan | 0.867 | 0.716 | 0.328 | 1.3e-29 | |
| WB|WBGene00018925 | 340 | F56A11.5 [Caenorhabditis elega | 0.857 | 0.705 | 0.341 | 3.1e-28 | |
| WB|WBGene00018758 | 339 | F53E10.1 [Caenorhabditis elega | 0.857 | 0.707 | 0.300 | 2.8e-27 | |
| FB|FBgn0033451 | 340 | CG1665 [Drosophila melanogaste | 0.832 | 0.685 | 0.286 | 6.8e-24 | |
| UNIPROTKB|F1Q1D9 | 304 | MARC1 "Uncharacterized protein | 0.578 | 0.532 | 0.359 | 1.1e-21 | |
| UNIPROTKB|Q5VT66 | 337 | MARC1 "MOSC domain-containing | 0.578 | 0.480 | 0.342 | 2.1e-20 | |
| UNIPROTKB|F1Q1E7 | 187 | MARC2 "Uncharacterized protein | 0.582 | 0.871 | 0.351 | 2.7e-20 | |
| UNIPROTKB|G5E6I5 | 343 | MOSC1 "Uncharacterized protein | 0.578 | 0.472 | 0.348 | 3.5e-20 | |
| MGI|MGI:1914497 | 338 | Marc2 "mitochondrial amidoxime | 0.575 | 0.476 | 0.338 | 5.7e-20 | |
| UNIPROTKB|Q1LZH1 | 336 | MARC2 "MOSC domain-containing | 0.596 | 0.497 | 0.316 | 7.2e-20 |
| WB|WBGene00009049 F22B8.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 85/259 (32%), Positives = 136/259 (52%)
Query: 5 GCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADI 64
G LEDR+F+L E FI++++ L+ ++ YM G + +V QP KL++ + +
Sbjct: 74 GDLEDRAFMLVEESTGKFITARQKPKLVHVEN-YMTDGMLEVTVPGQP---KLSVDLRKV 129
Query: 65 LQTSHTKSFTLYVDEVLEAFDCGDLASDWFAKYLLNQSDRSI--RLGLSTNRRRSIGDNY 122
LQ T TL+ + + +DCGD + + Y+ + R I + GL T R D +
Sbjct: 130 LQNKRTIRATLFKNLKQDGYDCGDEVAKLLSDYIEEPNYRLIFYKEGLYTERTVIPDDQW 189
Query: 123 LRKYTTVYDNVNDEDIGVYADMTSYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVD 182
+ ND D G + D+ + + + SL+ LN+K+ + ++M FR +I ++
Sbjct: 190 ---WNNPVPKRND-DSG-FTDLAPFHIATDASLKVLNEKLDN----KITMRYFRPSIYIE 240
Query: 183 GPPSYAEDTWDWVRFNSDVITRQVKPCTRCILTTVHPDTGRKQPDSQPLKMLQMYRAVPD 242
G ++ ED W +R D PCTRC+LTTV P G + QPLK L+ +R VPD
Sbjct: 241 GCAAWDEDKWAEIRIG-DAHLECFAPCTRCVLTTVDPVKGEMSKEMQPLKKLREFRLVPD 299
Query: 243 LERRKVENFAPMFGVYMGV 261
+ RKV +P+FGVY G+
Sbjct: 300 GKMRKVHMESPVFGVYAGL 318
|
|
| WB|WBGene00018925 F56A11.5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00018758 F53E10.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0033451 CG1665 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q1D9 MARC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5VT66 MARC1 "MOSC domain-containing protein 1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q1E7 MARC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G5E6I5 MOSC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1914497 Marc2 "mitochondrial amidoxime reducing component 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q1LZH1 MARC2 "MOSC domain-containing protein 2, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 280 | |||
| COG3217 | 270 | COG3217, COG3217, Uncharacterized Fe-S protein [Ge | 2e-29 | |
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 2e-14 | |
| pfam03473 | 124 | pfam03473, MOSC, MOSC domain | 1e-11 | |
| pfam03476 | 118 | pfam03476, MOSC_N, MOSC N-terminal beta barrel dom | 2e-06 |
| >gnl|CDD|225758 COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-29
Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 44/271 (16%)
Query: 9 DRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQTS 68
DR F+L + + FI++++ ++ Y G P E+L ++ AD
Sbjct: 33 DRRFMLVDP-DGRFITARRRPAMVRFTPAYEHDGLR----LTAPDGEELYVRFAD----- 82
Query: 69 HTKSFTLYVDEVLEAFDCGDLASDWFAKYLLNQSDRSIRLGLSTNRRRSIGDNYLRKYTT 128
++ + A GD A+DW + +L R++ L R G + R
Sbjct: 83 AQRAPVEVWGDHFTADAAGDAANDWLSGFL----GRAVSL-------RWDGAGFAR---- 127
Query: 129 VYDNVNDEDIGV---YADMTSYMVLNENSLRDLNKKMSDIGVEDVSMLQFRGNIVVDGPP 185
V +AD ++ N SL DL +++ ++ M +FR N+VV+G
Sbjct: 128 ----RVKAGPAVPVTFADGYPILLFNTASLADLRRRVP----ANLEMERFRPNLVVEGED 179
Query: 186 SYAEDTWDWVRFNSDVITRQVKPCTRCILTTVHPDTGRKQPDSQPLKMLQMYRAVPDLER 245
++AED+W +R V VKPC+RCI TTV PDTG ++P +PL L +R PD
Sbjct: 180 AFAEDSWKSIRI-GGVRFDVVKPCSRCIFTTVDPDTGERRPGGEPLFTLNRFRTNPD--- 235
Query: 246 RKVENFAPMFGVYMGVHRTGYVNVGDDVYVG 276
+FG + G + VGD V V
Sbjct: 236 ----AGGVLFGQNLIARNEGRIRVGDAVEVL 262
|
Length = 270 |
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
| >gnl|CDD|217583 pfam03473, MOSC, MOSC domain | Back alignment and domain information |
|---|
| >gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG3217 | 270 | Uncharacterized Fe-S protein [General function pre | 100.0 | |
| KOG2362|consensus | 336 | 100.0 | ||
| PF03473 | 133 | MOSC: MOSC domain; InterPro: IPR005302 Molybdenum | 99.96 | |
| PF03476 | 120 | MOSC_N: MOSC N-terminal beta barrel domain; InterP | 99.86 | |
| KOG2142|consensus | 728 | 98.9 | ||
| PRK14499 | 308 | molybdenum cofactor biosynthesis protein MoaC/MOSC | 98.76 | |
| PRK11536 | 223 | 6-N-hydroxylaminopurine resistance protein; Provis | 98.53 | |
| COG2258 | 210 | Uncharacterized protein conserved in bacteria [Fun | 98.43 |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=469.47 Aligned_cols=251 Identities=24% Similarity=0.394 Sum_probs=210.2
Q ss_pred cccccccceEEEEEcCCCceEeeccccceeEEEEEEe-CCCcEEEEEEecCCce-eEEEeccccccc-ceeEeeeeeecc
Q psy10370 3 QDGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYM-GGGAFQFSVYNQPSYE-KLTIQVADILQT-SHTKSFTLYVDE 79 (280)
Q Consensus 3 ~~Gl~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~-~~~~l~~~~l~~p~~~-~l~v~l~~~~~~-~~~~~~~~v~~~ 79 (280)
..||.|||+|||+| ++|+|+|||++|+|++|+|+++ .++.|+ |++|+++ +|.|++++.... ....+ +||++
T Consensus 543 ~~Gl~~DR~~~lvd-~~g~~~t~r~~p~l~~i~~~~~~~~~~l~---l~~~~~~~~l~v~l~~~~~~~~~~~v--~v~~~ 616 (805)
T PLN02724 543 ETGLLYDREWMIQS-LTGEILTQKKVPEMCLITTFIDLESGKLV---VRAPRCDHKLEIPLESDSQHEESGEV--ILCGN 616 (805)
T ss_pred cccccccceEEEEc-CCCcEEEcccCceEEEEEeEEecCCCeEE---EEcCCCCccEEEeCCCccccccccee--EEeCC
Confidence 57999999999999 8999999999999999999995 467899 9999987 799999875432 44567 99999
Q ss_pred eeeeeeccchhhHHHHHhcCCCCeeEEecCCCCccccccCccccccccccccCCCCCCeeeccCcCeeeeecHhHHHHHH
Q psy10370 80 VLEAFDCGDLASDWFAKYLLNQSDRSIRLGLSTNRRRSIGDNYLRKYTTVYDNVNDEDIGVYADMTSYMVLNENSLRDLN 159 (280)
Q Consensus 80 ~~~~~d~g~~~~~wlS~~Lg~~~~rLv~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~D~~p~~lis~~Sl~~l~ 159 (280)
.+.++|||+++++|||++||+ +||||+.+...++..... ... ..+. .......+|+|.+||||+|++||++||
T Consensus 617 ~~~~~~~g~~~~~w~S~~lg~-~~~Lv~~~~~~~r~~~~~--~~~---~~~~-~~~~~~~~faD~~p~llis~aSl~~Ln 689 (805)
T PLN02724 617 RAESMSYGTEINEWFTNALGR-RCTLVRKSSSNTRVCRNR--NPS---HSPC-GDDESRLSFANEGQFLLISEASVEDLN 689 (805)
T ss_pred cceeEecchhHHHHHHHHhCC-ceEEEEeCCccccccccc--ccc---cccc-cCcCCceeecCCCceEEecHHHHHHHH
Confidence 999999999999999999994 899997654333221110 000 0000 012345899999999999999999999
Q ss_pred Hhhccc---CCCCccccceeeeEEEeCCCCccCCCccEEEeCCCeEEEEEeecccceeeeeeCCCCCCCCCCChHHHHHh
Q psy10370 160 KKMSDI---GVEDVSMLQFRGNIVVDGPPSYAEDTWDWVRFNSDVITRQVKPCTRCILTTVHPDTGRKQPDSQPLKMLQM 236 (280)
Q Consensus 160 ~~l~~~---~~~~~~~~RFRpNIvv~g~~pf~ED~W~~l~IG~~~~~~vv~pc~RC~~~~vDp~tG~~~~~~epl~tL~~ 236 (280)
++++.. +..+++++||||||||+|++||+||.|++|+|| ++.|++++||+||+||||||+||+++++.|||+||++
T Consensus 690 ~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~IG-~~~~~~~~~C~RC~~~tvDp~tg~~~~~~epl~tL~~ 768 (805)
T PLN02724 690 RRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSIG-DAEFTVLGGCNRCQMINIDQETGLVNPSNEPLATLAS 768 (805)
T ss_pred HHhccccccccCCCcHHHccceEEECCCCCccccCceEEEEC-CEEEEEecccCCCCCCcCCcccCccCCCCChHHHHHH
Confidence 999742 123799999999999999999999999999999 9999999999999999999999998666799999999
Q ss_pred hhCCCchhhcccCCCCceeeeeEEe----ecCCEEeeCCeEEEe
Q psy10370 237 YRAVPDLERRKVENFAPMFGVYMGV----HRTGYVNVGDDVYVG 276 (280)
Q Consensus 237 ~R~~~~~~~~~~~~~~~~fG~~~~~----~~~G~I~VGD~V~v~ 276 (280)
||+. +++++||+|+++ ...|.|+|||.|++.
T Consensus 769 ~R~~---------~~~~~FG~~~~~~~~~~~~~~i~vGd~v~~~ 803 (805)
T PLN02724 769 YRRV---------KGKILFGILLRYEISDKRDQWIAVGSRVNPR 803 (805)
T ss_pred HhCc---------CCCCCccceeeccccCCCCcEEEeCCEEEec
Confidence 9972 467899999977 466899999999875
|
|
| >COG3217 Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2362|consensus | Back alignment and domain information |
|---|
| >PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form | Back alignment and domain information |
|---|
| >PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO) | Back alignment and domain information |
|---|
| >KOG2142|consensus | Back alignment and domain information |
|---|
| >PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional | Back alignment and domain information |
|---|
| >COG2258 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 280 | |||
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 3e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 3e-09
Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 1 EVQDGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQ 60
+ + +++ N+ +++ L + E G V P +L I
Sbjct: 16 TQSEAAAYQKRWLVAND-AGQWLNRDLCPRLAEVSVELRMGY----LVLKAPGMLRLDIP 70
Query: 61 VADILQTSHTKSFTLYVDEVLEAFDCGDLASDWFAKYLLNQSDRSIRLGLSTNRRR 116
+ I + L ++ ++ D G+LA+ W + + R +++ R
Sbjct: 71 LDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNH-AGVPCRILKVHPDMAEVR 125
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 99.9 | |
| 1oru_A | 195 | YUAD protein; structural genomics, cytosolic hypot | 99.74 | |
| 1o65_A | 246 | Hypothetical protein YIIM; structural genomics, un | 99.4 |
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=169.57 Aligned_cols=100 Identities=15% Similarity=0.250 Sum_probs=88.0
Q ss_pred cccceEEEEEcCCCceEeeccccceeEEEEEEeCCCcEEEEEEecCCceeEEEecccccc--cceeEeeeeeecceeeee
Q psy10370 7 LEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQ--TSHTKSFTLYVDEVLEAF 84 (280)
Q Consensus 7 ~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~~~~~l~~~~l~~p~~~~l~v~l~~~~~--~~~~~~~~~v~~~~~~~~ 84 (280)
.|||+|||+| .+|+|+|||++|+|++|+|.+ +++.|+ |++||++++.|++++... .....+ +||++.+.++
T Consensus 22 ~~DR~wmlvd-~~G~~lt~r~~P~Lali~~~~-~~~~L~---l~~pg~~~l~vpl~~~~~~~~~~~~v--~vw~~~~~a~ 94 (136)
T 2exn_A 22 AYQKRWLVAN-DAGQWLNRDLCPRLAEVSVEL-RMGYLV---LKAPGMLRLDIPLDVIEDDDSVRYQM--LVGEQTVDVV 94 (136)
T ss_dssp GTCCSEEEEE-TTSCEECTTTCGGGGCCEEEE-CSSEEE---EECSSSCEEEEESSCCCSSCSCEEEE--EETTEEEEEE
T ss_pred ccCCcEEEEe-CCCCEEEccCCccccEEEEEe-cCCEEE---EEeCCCceEEEECCCccccccCceeE--EEeCCcceeE
Confidence 7999999999 799999999999999999999 567899 999999999999986641 244567 9999999999
Q ss_pred eccchhhHHHHHhcCCCCeeEEecCCCCcc
Q psy10370 85 DCGDLASDWFAKYLLNQSDRSIRLGLSTNR 114 (280)
Q Consensus 85 d~g~~~~~wlS~~Lg~~~~rLv~~~~~~r~ 114 (280)
|||+++++|||+||| .++||++.+...++
T Consensus 95 d~g~~~~~W~S~~Lg-~p~rLv~~~~~~~R 123 (136)
T 2exn_A 95 DEGELAAAWISNHAG-VPCRILKVHPDMAE 123 (136)
T ss_dssp ECCHHHHHHHHHHTC-SSEEEEEECTTTCC
T ss_pred eccHHHHHHHHHHhC-CCeEEEEcCCCCcc
Confidence 999999999999999 59999977654433
|
| >1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2 | Back alignment and structure |
|---|
| >1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 280 | ||||
| d1orua_ | 182 | b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus | 3e-08 | |
| d2exna1 | 128 | b.165.1.1 (A:1-128) Hypothetical protein BB0938 {B | 7e-06 |
| >d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]} Length = 182 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PK beta-barrel domain-like superfamily: PK beta-barrel domain-like family: MOSC (MOCO sulphurase C-terminal) domain domain: Hypothetical protein YuaD species: Bacillus subtilis [TaxId: 1423]
Score = 50.4 bits (120), Expect = 3e-08
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 154 SLRDLNKKMSDIGVEDVSMLQFRGNIVVDG-PPSYAEDTWDWVRFNSDVITRQVKPCTRC 212
S+ + N+ +GV + N+ V G P + + F S C
Sbjct: 70 SIEECNEIALKMGVPRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPC 129
Query: 213 ILTTVHPDTGRKQPDSQPLKMLQMYRAVPDLERRKVENFAPMFGVYMGVHRTGYVNVGDD 272
I Y P L V + + G+ V R G V GD+
Sbjct: 130 IQPGEVIQ--------------SYYPDQPKLASAFVRHALGIRGIVCIVERPGAVYTGDE 175
Query: 273 VYV 275
+ V
Sbjct: 176 IEV 178
|
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} Length = 128 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| d2exna1 | 128 | Hypothetical protein BB0938 {Bordetella bronchisep | 99.94 | |
| d1orua_ | 182 | Hypothetical protein YuaD {Bacillus subtilis [TaxI | 99.51 | |
| d1o65a_ | 233 | Hypothetical protein YiiM {Escherichia coli [TaxId | 99.03 |
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Probab=99.94 E-value=1.5e-27 Score=188.23 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=90.7
Q ss_pred CcccccccceEEEEEcCCCceEeeccccceeEEEEEEeCCCcEEEEEEecCCceeEEEeccccccc--ceeEeeeeeecc
Q psy10370 2 VQDGCLEDRSFVLFNEKEKNFISSKKFNHLLLIQTEYMGGGAFQFSVYNQPSYEKLTIQVADILQT--SHTKSFTLYVDE 79 (280)
Q Consensus 2 ~~~Gl~~DR~~~lvd~~~g~~lt~r~~p~L~~i~~~i~~~~~l~~~~l~~p~~~~l~v~l~~~~~~--~~~~~~~~v~~~ 79 (280)
++.||+|||+|||+| ++|+|+|||++|+|++|+|.+ +++.|+ |++||++++.|++...... ....+ .+|++
T Consensus 17 ~~~gl~~DR~wmlvd-~~G~fltqR~~P~La~i~~~~-~~~~L~---l~~pg~~~l~vpL~~~~~~~~~~~~v--~vw~~ 89 (128)
T d2exna1 17 QSEAAAYQKRWLVAN-DAGQWLNRDLCPRLAEVSVEL-RMGYLV---LKAPGMLRLDIPLDVIEDDDSVRYQM--LVGEQ 89 (128)
T ss_dssp CGGGGGTCCSEEEEE-TTSCEECTTTCGGGGCCEEEE-CSSEEE---EECSSSCEEEEESSCCCSSCSCEEEE--EETTE
T ss_pred ccchhhhceeEEEEC-CCCCEEEcccCCcEEEEEEEE-eCCEEE---EEecCCCceeeccccccccccceEEE--EEcCC
Confidence 568999999999999 999999999999999999999 678899 9999999999998765432 44567 99999
Q ss_pred eeeeeeccchhhHHHHHhcCCCCeeEEecCC
Q psy10370 80 VLEAFDCGDLASDWFAKYLLNQSDRSIRLGL 110 (280)
Q Consensus 80 ~~~~~d~g~~~~~wlS~~Lg~~~~rLv~~~~ 110 (280)
.+.++|||+++++|||++|| .+||||+...
T Consensus 90 ~~~a~~~g~~~~~WfS~~LG-~~~rLv~~~p 119 (128)
T d2exna1 90 TVDVVDEGELAAAWISNHAG-VPCRILKVHP 119 (128)
T ss_dssp EEEEEECCHHHHHHHHHHTC-SSEEEEEECT
T ss_pred eeEEEECChHHHHHHHHHhC-CceEEEEECC
Confidence 99999999999999999999 5899997654
|
| >d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|