Psyllid ID: psy10393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWMQAEYLRSDWK
Secondary Structure (PSIPRED)
cEEEEEccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccHHHEEEHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mallvlgdpedvknneDKIYSIAKRyggipagesngrrgYMLTYIIAYIRDFACdyyfigdsfetsvpwdkTVLLCINVKKRLtrectgrwlPVLLSIKVRWMQAEYLRSDWK
Flexible Loop (DISEMBL)
mallvlgdpedvknnEDKIYSIakryggipagesngrRGYMLTYIIAYIRDFACDYYFIGDSfetsvpwdkTVLLCINVKkrltrectgrwlpvllsikvRWMQAEYLRSDWK
Low Complexity Region (SEG)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWMQAEYLRSDWK
Disordered region (IsUnstruct)
*****************KIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWMQAEYL*****
Disordered Region (DISOPRED)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWMQAEY******
Disordered Region (DISEMBL)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWMQAEYLRSDWK
Disordered Region (DISPRO)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWMQAEYLRSDW*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWMQAEYLRSDWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
O00116	658	Alkyldihydroxyacetonephos	yes	N/A	0.752	0.129	0.611	8e-28
Q8C0I1	645	Alkyldihydroxyacetonephos	yes	N/A	0.778	0.136	0.579	4e-27
P97275	658	Alkyldihydroxyacetonephos	yes	N/A	0.867	0.148	0.54	7e-27
Q9EQR2	644	Alkyldihydroxyacetonephos	yes	N/A	0.778	0.136	0.556	1e-26
Q9V778	631	Alkyldihydroxyacetonephos	yes	N/A	0.778	0.139	0.534	1e-22
O45218	597	Alkyldihydroxyacetonephos	yes	N/A	0.831	0.157	0.416	1e-17

>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 528 FETSAPWDRVVDLCRNVKERITREC 552

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus musculus GN=Agps PE=1 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+S
Sbjct: 455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTGR 90
           FETS PWD+ + LC NVK+R+ REC  R
Sbjct: 515 FETSAPWDRVIDLCRNVKERIRRECKER 542

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus GN=AGPS PE=1 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 2/100 (2%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527

Query: 63  FETSVPWDKTVLLCINVKKRLTREC--TGRWLPVLLSIKV 100
           FETS PWD+ V LC NVK+R+ REC   G   P L + +V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRV 567

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/88 (55%), Positives = 66/88 (75%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+S
Sbjct: 454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTGR 90
           FETS PWD+ + LC NVK+R+ REC  R
Sbjct: 514 FETSAPWDRVIDLCRNVKERIRRECKER 541

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 62/88 (70%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD +DV+  E  IY IA+++ G PAG  NG RGY+LT++IAYIRDF      + +S
Sbjct: 420 LLFEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAES 479

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTGR 90
           FETSVPWD+  LLC +VK+R+  EC+ R
Sbjct: 480 FETSVPWDRCSLLCRSVKQRVVSECSKR 507

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 65/96 (67%), Gaps = 2/96 (2%)

Query: 7   GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 66
           G+ E+V  +E+++  +A+++ G+  G  NG+ GY LT+ IAY+RD   ++  +G+SFETS
Sbjct: 401 GNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETS 460

Query: 67  VPWDKTVLLCINVKKRLTRECTGRWL--PVLLSIKV 100
           VPWDK + LC NVK+ + RE   + +  PVL + +V
Sbjct: 461 VPWDKVLSLCRNVKELMKREAKAQGVTHPVLANCRV 496

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
147907126	627	alkyldihydroxyacetonephosphate synthase,	0.778	0.140	0.590	3e-26
390464346	652	PREDICTED: alkyldihydroxyacetonephosphat	0.752	0.130	0.611	3e-26
426337844	626	PREDICTED: alkyldihydroxyacetonephosphat	0.752	0.135	0.611	3e-26
403258679	652	PREDICTED: alkyldihydroxyacetonephosphat	0.752	0.130	0.611	3e-26
355750655	584	hypothetical protein EGM_04101, partial	0.752	0.145	0.611	3e-26
297668926	668	PREDICTED: alkyldihydroxyacetonephosphat	0.752	0.127	0.611	3e-26
297264408	693	PREDICTED: alkyldihydroxyacetonephosphat	0.752	0.122	0.611	3e-26
119631462	536	alkylglycerone phosphate synthase, isofo	0.752	0.158	0.611	3e-26
119631463	684	alkylglycerone phosphate synthase, isofo	0.752	0.124	0.611	3e-26
390464348	568	PREDICTED: alkyldihydroxyacetonephosphat	0.752	0.149	0.611	3e-26

>gi|147907126|ref|NP_001086573.1| alkyldihydroxyacetonephosphate synthase, peroxisomal [Xenopus laevis] gi|49903684|gb|AAH76825.1| Agps-prov protein [Xenopus laevis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 67/88 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+S
Sbjct: 437 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYLIGES 496

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTGR 90
           FETSVPWD+ + LC NVK+R+ REC  R
Sbjct: 497 FETSVPWDRVLDLCRNVKERIVRECKER 524

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390464346|ref|XP_002749324.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Callithrix jacchus]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 462 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 521

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 522 FETSAPWDRVVDLCKNVKERITREC 546

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426337844|ref|XP_004032904.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Gorilla gorilla gorilla]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 436 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 495

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 496 FETSAPWDRVVDLCRNVKERITREC 520

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403258679|ref|XP_003921880.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Saimiri boliviensis boliviensis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 462 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 521

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 522 FETSAPWDRVVDLCRNVKERITREC 546

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355750655|gb|EHH54982.1| hypothetical protein EGM_04101, partial [Macaca fascicularis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 394 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 453

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 454 FETSAPWDRVVDLCRNVKERITREC 478

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297668926|ref|XP_002812675.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Pongo abelii]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 478 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 537

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 538 FETSAPWDRVVDLCRNVKERITREC 562

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297264408|ref|XP_002799004.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal-like [Macaca mulatta]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 503 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 562

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 563 FETSAPWDRVVDLCRNVKERITREC 587

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119631462|gb|EAX11057.1| alkylglycerone phosphate synthase, isoform CRA_a [Homo sapiens]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 346 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 405

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 406 FETSAPWDRVVDLCRNVKERITREC 430

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119631463|gb|EAX11058.1| alkylglycerone phosphate synthase, isoform CRA_b [Homo sapiens]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 494 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 553

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 554 FETSAPWDRVVDLCRNVKERITREC 578

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390464348|ref|XP_003733208.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 2 [Callithrix jacchus]

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 378 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 437

Query: 63  FETSVPWDKTVLLCINVKKRLTREC 87
           FETS PWD+ V LC NVK+R+TREC
Sbjct: 438 FETSAPWDRVVDLCKNVKERITREC 462

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
UNIPROTKB|O00116	658	AGPS "Alkyldihydroxyacetonepho	0.752	0.129	0.611	5.1e-25
UNIPROTKB|E1BPV2	576	AGPS "Uncharacterized protein"	0.752	0.147	0.6	7.5e-25
UNIPROTKB|E2QVV9	653	AGPS "Uncharacterized protein"	0.752	0.130	0.6	1.1e-24
UNIPROTKB|F6Y1U6	663	AGPS "Uncharacterized protein"	0.752	0.128	0.6	1.1e-24
UNIPROTKB|J9NZ69	699	AGPS "Uncharacterized protein"	0.752	0.121	0.6	1.3e-24
UNIPROTKB|I3LM15	646	AGPS "Uncharacterized protein"	0.752	0.131	0.6	1.3e-24
UNIPROTKB|F1P5J7	638	AGPS "Uncharacterized protein"	0.752	0.133	0.6	1.7e-24
MGI|MGI:2443065	645	Agps "alkylglycerone phosphate	0.778	0.136	0.579	2.8e-24
UNIPROTKB|P97275	658	AGPS "Alkyldihydroxyacetonepho	0.867	0.148	0.54	3.8e-24
RGD|620364	644	Agps "alkylglycerone phosphate	0.778	0.136	0.556	7.6e-24

UNIPROTKB|O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 5.1e-25, P = 5.1e-25
 Identities = 52/85 (61%), Positives = 67/85 (78%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct:   468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   528 FETSAPWDRVVDLCRNVKERITREC 552

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS;TAS

GO:0071949 "FAD binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BPV2 AGPS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 7.5e-25, P = 7.5e-25
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   386 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 445

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   446 FETSAPWDRVVDLCRNVKERITREC 470

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2QVV9 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   463 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 522

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   523 FETSAPWDRVVDLCRNVKERITREC 547

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|F6Y1U6 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   473 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 532

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   533 FETSAPWDRVVDLCRNVKERITREC 557

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|J9NZ69 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   469 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 528

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   529 FETSAPWDRVVDLCRNVKERITREC 553

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|I3LM15 AGPS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   496 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVLGES 555

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETS PWD+ V LC NVK+R+TREC
Sbjct:   556 FETSAPWDRVVDLCRNVKERITREC 580

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1P5J7 AGPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 288 (106.4 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+S
Sbjct:   448 LLFEGDREKVLQHEKQVYDIATKFGGLAAGEDNGQRGYMLTFVIAYLRDLGLDYYVIGES 507

Query:    63 FETSVPWDKTVLLCINVKKRLTREC 87
             FETSVPWD+ + LC NVK+R+ REC
Sbjct:   508 FETSVPWDRVLDLCRNVKERIVREC 532

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

MGI|MGI:2443065 Agps "alkylglycerone phosphate synthase" [Mus musculus (taxid:10090)]

 Score = 286 (105.7 bits), Expect = 2.8e-24, P = 2.8e-24
 Identities = 51/88 (57%), Positives = 66/88 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+S
Sbjct:   455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTGR 90
             FETS PWD+ + LC NVK+R+ REC  R
Sbjct:   515 FETSAPWDRVIDLCRNVKERIRRECKER 542

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P97275 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Cavia porcellus (taxid:10141)]

 Score = 285 (105.4 bits), Expect = 3.8e-24, P = 3.8e-24
 Identities = 54/100 (54%), Positives = 71/100 (71%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct:   468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527

Query:    63 FETSVPWDKTVLLCINVKKRLTRECT--GRWLPVLLSIKV 100
             FETS PWD+ V LC NVK+R+ REC   G   P L + +V
Sbjct:   528 FETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRV 567

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0008611 "ether lipid biosynthetic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

RGD|620364 Agps "alkylglycerone phosphate synthase" [Rattus norvegicus (taxid:10116)]

 Score = 282 (104.3 bits), Expect = 7.6e-24, P = 7.6e-24
 Identities = 49/88 (55%), Positives = 66/88 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+S
Sbjct:   454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTGR 90
             FETS PWD+ + LC NVK+R+ REC  R
Sbjct:   514 FETSAPWDRVIDLCRNVKERIRRECKER 541

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO;IDA;TAS

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO;IDA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0071949 "FAD binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EQR2	ADAS_RAT	2, ., 5, ., 1, ., 2, 6	0.5568	0.7787	0.1366	yes	N/A
O00116	ADAS_HUMAN	2, ., 5, ., 1, ., 2, 6	0.6117	0.7522	0.1291	yes	N/A
P97275	ADAS_CAVPO	2, ., 5, ., 1, ., 2, 6	0.54	0.8672	0.1489	yes	N/A
Q9V778	ADAS_DROME	2, ., 5, ., 1, ., 2, 6	0.5340	0.7787	0.1394	yes	N/A
Q8C0I1	ADAS_MOUSE	2, ., 5, ., 1, ., 2, 6	0.5795	0.7787	0.1364	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
KOG1233|consensus	613		99.86
PF02913	248	FAD-oxidase_C: FAD linked oxidases, C-terminal dom	98.96
TIGR00387	413	glcD glycolate oxidase, subunit GlcD. This protein	98.43
PRK11230	499	glycolate oxidase subunit GlcD; Provisional	97.89
PLN02805	555	D-lactate dehydrogenase [cytochrome]	97.76
COG3286	204	Uncharacterized protein conserved in archaea [Func	91.83

>KOG1233|consensus

Probab=99.86  E-value=3.7e-22  Score=164.96  Aligned_cols=104  Identities=46%  Similarity=0.856  Sum_probs=98.0

Q ss_pred             CEEEEecChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHH
Q psy10393          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK   80 (113)
Q Consensus         1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~   80 (113)
                      +|+.|||+.++|+++++++++|+.+++|+..|..+|+..|..+|.++|+||+-+.+|++.|+|||++|||++..||++|+
T Consensus       421 ATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVK  500 (613)
T KOG1233|consen  421 ATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVK  500 (613)
T ss_pred             hhheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCC--eeEEEEeecch
Q psy10393         81 KRLTRECTGRWLP--VLLSIKVRWMQ  104 (113)
Q Consensus        81 ~al~~a~~~~g~~--~~v~ch~SH~~  104 (113)
                      +++.++++++|+.  ++-.||++...
T Consensus       501 er~~rEck~~gv~~~~~s~CRVTQtY  526 (613)
T KOG1233|consen  501 ERMKRECKAQGVTHPVLSNCRVTQTY  526 (613)
T ss_pred             HHHHHHHHhcCCCcccccceeEEEEe
Confidence            9999999999986  33559998653

>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage

Probab=98.96  E-value=4.1e-10  Score=83.33  Aligned_cols=97  Identities=22%  Similarity=0.216  Sum_probs=76.7

Q ss_pred             CEEEEecChH-HhHhHHH-HHHHHHHHcCCcc-----CCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchH
Q psy10393          1 MALLVLGDPE-DVKNNED-KIYSIAKRYGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTV   73 (113)
Q Consensus         1 ~~~gfEG~~~-~V~~~~~-~~~~i~~~~GG~~-----~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~   73 (113)
                      +++.|+|+++ .++.+.+ .+.++++++|+..     -.+...+-|...++..||+++.....|...+|+|+++||++++
T Consensus        62 llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~  141 (248)
T PF02913_consen   62 LLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLP  141 (248)
T ss_dssp             EEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhh
Confidence            4688999994 4666666 7888888888764     1223457788877777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEeecch
Q psy10393         74 LLCINVKKRLTRECTGRWLPVLLSIKVRWMQ  104 (113)
Q Consensus        74 ~l~~~V~~al~~a~~~~g~~~~v~ch~SH~~  104 (113)
                      ++++.+++.+.+..       +..||++|..
T Consensus       142 ~~~~~~~~~~~~~~-------~~~~~~gH~~  165 (248)
T PF02913_consen  142 EFLREIRALLREYG-------LEVCHFGHAG  165 (248)
T ss_dssp             HHHHHHHHHHHHCT-------EEEEEEEEEE
T ss_pred             hHHHhhhhhhhhcc-------ccccceEEcc
Confidence            99999977777543       6777777764

The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....

>TIGR00387 glcD glycolate oxidase, subunit GlcD

Probab=98.43  E-value=5.9e-07  Score=73.85  Aligned_cols=95  Identities=14%  Similarity=0.051  Sum_probs=70.9

Q ss_pred             CEEEEecChHHhHhHHHHHHHHHHHcCCccC----C-CcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHH
Q psy10393          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL   75 (113)
Q Consensus         1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~----G-~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l   75 (113)
                      +++.|+|+.++++.+.+++.++++++|+...    + +...+.|...++..|++++.. ...+   +.|+++||++++++
T Consensus       234 l~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~  309 (413)
T TIGR00387       234 LLVEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEA  309 (413)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHH
Confidence            3578999999999999999999999988532    1 245667888788889988742 2222   46799999999999


Q ss_pred             HHHHHHHHHHHHhccCCCeeEEEEeecc
Q psy10393         76 CINVKKRLTRECTGRWLPVLLSIKVRWM  103 (113)
Q Consensus        76 ~~~V~~al~~a~~~~g~~~~v~ch~SH~  103 (113)
                      ++.+++.++    +.+.+..++.|++|-
T Consensus       310 ~~~~~~~~~----~~~~~~~~~gH~g~g  333 (413)
T TIGR00387       310 LRGIADIAR----KYDFTIANFGHAGDG  333 (413)
T ss_pred             HHHHHHHHH----HcCCeEEEEEEecCC
Confidence            999876654    446666667777653

This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.

>PRK11230 glycolate oxidase subunit GlcD; Provisional

Probab=97.89  E-value=4.2e-05  Score=64.85  Aligned_cols=91  Identities=10%  Similarity=0.022  Sum_probs=63.7

Q ss_pred             EEEEecChHHhHhHHHHHHHHHHHcCCccCC-----CcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHH
Q psy10393          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLC   76 (113)
Q Consensus         2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G-----~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~   76 (113)
                      ++.|+|+++.++.+.+++.++++++|+..+.     ++..+.|..-+...|+++..  ..+++.  .++++||+++++++
T Consensus       292 l~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~~  367 (499)
T PRK11230        292 LCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGVL  367 (499)
T ss_pred             EEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHHH
Confidence            5788999999999999999999999975332     12335676633456887762  334443  49999999999999


Q ss_pred             HHHHHHHHHHHhccCCCeeEEEEe
Q psy10393         77 INVKKRLTRECTGRWLPVLLSIKV  100 (113)
Q Consensus        77 ~~V~~al~~a~~~~g~~~~v~ch~  100 (113)
                      +.+++..    ++.+.+..++-|+
T Consensus       368 ~~~~~~~----~~~~~~~~~~gH~  387 (499)
T PRK11230        368 EGIARLS----QQYGLRVANVFHA  387 (499)
T ss_pred             HHHHHHH----HHcCCeEEEEEEe
Confidence            9997744    3445444444443

>PLN02805 D-lactate dehydrogenase [cytochrome]

Probab=97.76  E-value=9.6e-05  Score=63.66  Aligned_cols=93  Identities=13%  Similarity=0.031  Sum_probs=62.1

Q ss_pred             CEEEEecChHHhHhHHHHHHHHHHHcCCc--cCCCc---chhhhhhhhhhh-hhhhhhhhhccCceeeeecccccCchHH
Q psy10393          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGI--PAGES---NGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVL   74 (113)
Q Consensus         1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~--~~G~~---~g~~W~~~Rf~~-pYLRd~l~~~G~~~DT~ETA~~Ws~v~~   74 (113)
                      +++.|+|++++++.+.+.+.+|++++|+.  .+...   ..+.|.. |-.. |.+..  ...+....+.++++||+++++
T Consensus       366 Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~~-R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e  442 (555)
T PLN02805        366 LMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWKI-RKEALWACFA--MEPKYEAMITDVCVPLSHLAE  442 (555)
T ss_pred             EEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHH-HHHHHHHHhh--cCCCCceeEEEEEEEHHHHHH
Confidence            36788999999999999999999999984  22222   2445663 4333 22221  123444557899999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCeeEEEEeecc
Q psy10393         75 LCINVKKRLTRECTGRWLPVLLSIKVRWM  103 (113)
Q Consensus        75 l~~~V~~al~~a~~~~g~~~~v~ch~SH~  103 (113)
                      +++.+++.+.    +.+..   +++++|+
T Consensus       443 ~i~~~~~~~~----~~~~~---~~~~gHa  464 (555)
T PLN02805        443 LISRSKKELD----ASPLV---CTVIAHA  464 (555)
T ss_pred             HHHHHHHHHH----HcCCe---EEEEEEc
Confidence            9999976654    44544   4555554

>COG3286 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.83  E-value=0.68  Score=35.64  Aligned_cols=84  Identities=13%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             EEEecChHHhHhHHHHHHHHHHHcCCccCCCcchh-----hhhhhhhhhh--hhhhhhhhccCcee----eeecccccCc
Q psy10393          3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGR-----RGYMLTYIIA--YIRDFACDYYFIGD----SFETSVPWDK   71 (113)
Q Consensus         3 ~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~-----~W~~~Rf~~p--YLRd~l~~~G~~~D----T~ETA~~Ws~   71 (113)
                      +-..|.++.++...+.++++.++.-+..-+...|.     --...+=+.|  -|+|.|--+|+=++    -++|++||+.
T Consensus        41 V~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~e  120 (204)
T COG3286          41 VNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSE  120 (204)
T ss_pred             EEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHH
Confidence            34578899999999999998887766543332111     1112222232  59999999998764    5899999999


Q ss_pred             hHHHHHHHHHHHHHH
Q psy10393         72 TVLLCINVKKRLTRE   86 (113)
Q Consensus        72 v~~l~~~V~~al~~a   86 (113)
                      +..+.+++-+..+.+
T Consensus       121 v~E~vreLse~~~E~  135 (204)
T COG3286         121 VVELVRELSEVYREA  135 (204)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
4bby_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		5e-28
4bca_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		5e-28
4bc7_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		5e-28

>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658

Iteration: 1
 Score =  119 bits (297), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC--TGRWLPVLLSIKV 100
           FETS PWD+ V LC NVK+R+ REC   G   P L + +V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRV 567

>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658

Iteration: 1
 Score =  119 bits (297), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC--TGRWLPVLLSIKV 100
           FETS PWD+ V LC NVK+R+ REC   G   P L + +V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRV 567

>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658

Iteration: 1
 Score =  119 bits (297), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/100 (54%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTREC--TGRWLPVLLSIKV 100
           FETS PWD+ V LC NVK+R+ REC   G   P L + +V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRV 567

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	3e-19

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584

 Score = 80.2 bits (198), Expect = 3e-19
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 1   MALLVL---GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYY 57
           + L ++   G  + V  +   ++ I  +      G + G+      Y + YIRDF  D+ 
Sbjct: 392 VCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHN 451

Query: 58  FIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVL 95
              D  ET+V +     L  + K+   +    + +P  
Sbjct: 452 MWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAW 489

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	99.64
4bby_A	658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	99.46
1f0x_A	571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	98.22
1e8g_A	560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	97.9
3pm9_A	476	Putative oxidoreductase; putative D-2-hydroxygluta	97.75
2exr_A	524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	96.5
1wvf_A	520	4-cresol dehydrogenase [hydroxylating] flavoprote	96.42

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*

Probab=99.64  E-value=3.5e-16  Score=132.27  Aligned_cols=104  Identities=18%  Similarity=0.267  Sum_probs=98.1

Q ss_pred             CEEEEecChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHH
Q psy10393          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK   80 (113)
Q Consensus         1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~   80 (113)
                      +++.|+|+++.|+.+.+++.++|+++||...++...+.|+..|+..||+|+.++++|.+.+++||++|||++++++++++
T Consensus       395 llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~  474 (584)
T 2uuu_A          395 SIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAK  474 (584)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHH
Confidence            35789999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCeeEEEEeecch
Q psy10393         81 KRLTRECTGRWLPVLLSIKVRWMQ  104 (113)
Q Consensus        81 ~al~~a~~~~g~~~~v~ch~SH~~  104 (113)
                      +.+.+.+.+.|.+.+++||++|+-
T Consensus       475 ~~l~~~~~~~g~~~~~~~h~gH~g  498 (584)
T 2uuu_A          475 QTFVKHFKDQGIPAWICAHISHTY  498 (584)
T ss_dssp             HHHHHHHHTTTCCEEEEEEEEEEE
T ss_pred             HHHHhHHHhcCCeeEEEEEEEeec
Confidence            999999999999999999999974

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*

Probab=99.46  E-value=1.9e-13  Score=116.43  Aligned_cols=103  Identities=51%  Similarity=0.975  Sum_probs=97.7

Q ss_pred             EEEEecChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHHHHHHHHH
Q psy10393          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK   81 (113)
Q Consensus         2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~   81 (113)
                      ++.|||+.+.+..+.+.+.++++++||+..++..+++|...||..||+|+...+.+.+.+++||++||++++++++++++
T Consensus       467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~  546 (658)
T 4bby_A          467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE  546 (658)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCC--CeeEEEEeecch
Q psy10393         82 RLTRECTGRWL--PVLLSIKVRWMQ  104 (113)
Q Consensus        82 al~~a~~~~g~--~~~v~ch~SH~~  104 (113)
                      .+.+.+.+.+.  |.+.+||++|+.
T Consensus       547 ~l~~~~~~~g~~~~~~~~~~~~h~~  571 (658)
T 4bby_A          547 RIRRECKEKGVQFPPLSTCRVTQTY  571 (658)
T ss_dssp             HHHHHHHHTTCSSCCEEEEEEEEEC
T ss_pred             HHHHHHHhcCccccccceEEEEEEe
Confidence            99999988887  567999999974

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1

Probab=98.22  E-value=5.5e-08  Score=82.21  Aligned_cols=99  Identities=10%  Similarity=0.035  Sum_probs=72.3

Q ss_pred             EEEEecChHHhHhHHHHHHHHHHHcCCccC--CCcchhhhhhhhhhhh----hhhhhhhh-ccCceeeeecccccCchHH
Q psy10393          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL   74 (113)
Q Consensus         2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~g~~W~~~Rf~~p----YLRd~l~~-~G~~~DT~ETA~~Ws~v~~   74 (113)
                      ++-|+|+....  ..+++.+++++++|...  .++.+++|...||..+    ++|+...+ .| ...++|||+||++++.
T Consensus       393 lve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~  469 (571)
T 1f0x_A          393 LLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW  469 (571)
T ss_dssp             EEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred             EEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence            45666666532  35667778888866433  4567888888999987    78887665 33 3689999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCeeEEEEeecch
Q psy10393         75 LCINVKKRLTRECTGRWLPVLLSIKVRWMQ  104 (113)
Q Consensus        75 l~~~V~~al~~a~~~~g~~~~v~ch~SH~~  104 (113)
                      + +.+++.+.+.......-++++||..|+.
T Consensus       470 ~-~~~~~~l~~~~~~~~~~GH~g~g~~H~~  498 (571)
T 1f0x_A          470 Y-EHLPPEIDSQLVHKLYYGHFMCYVFHQD  498 (571)
T ss_dssp             S-CCCCHHHHTTEEEEEEEEETTTTEEEEE
T ss_pred             H-HHHHHHHHhhCccceeEEEEcCCceEEe
Confidence            9 9998888765544344567788888874

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*

Probab=97.90  E-value=2e-05  Score=65.89  Aligned_cols=95  Identities=12%  Similarity=-0.029  Sum_probs=69.3

Q ss_pred             EEEEecChHHhHhHHHHHHHHHHHcCCccC--CCcc--hhhhhhhhhhh----hhhhhh---hhhccCceeeeeccccc-
Q psy10393          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW-   69 (113)
Q Consensus         2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~--g~~W~~~Rf~~----pYLRd~---l~~~G~~~DT~ETA~~W-   69 (113)
                      ++.|+|+++.|+.+.+++.++|+++|+..+  .+.+  .+.|.. |+..    |+++..   .|..|-...++++++|| 
T Consensus       354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~  432 (560)
T 1e8g_A          354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS  432 (560)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence            466999999999999999999999998533  2222  344554 7655    776653   23332235668999999 


Q ss_pred             -CchHHHHHHHHHHHHHHHhccCCCeeEEEEee
Q psy10393         70 -DKTVLLCINVKKRLTRECTGRWLPVLLSIKVR  101 (113)
Q Consensus        70 -s~v~~l~~~V~~al~~a~~~~g~~~~v~ch~S  101 (113)
                       ++++++++.+++.    +++.|.+..++.|+.
T Consensus       433 ~~~l~~~~~~~~~~----~~~~g~~~~~~gH~g  461 (560)
T 1e8g_A          433 GEDAMMQYAVTKKR----CQEAGLDFIGTFTVG  461 (560)
T ss_dssp             HHHHHHHHHHHHHH----HHHHTCCCCEEEEEC
T ss_pred             HHHHHHHHHHHHHH----HHHcCCceEEEEEec
Confidence             9999999999654    456678888888874

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}

Probab=97.75  E-value=7.7e-05  Score=61.46  Aligned_cols=93  Identities=9%  Similarity=-0.080  Sum_probs=66.4

Q ss_pred             CEEEEecChHHhHhHHHHHHHHHHHcCCccC---C---Ccchhhhhhhhhhhh-hhhhhhhhccCceeeeecccccCchH
Q psy10393          1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---G---ESNGRRGYMLTYIIA-YIRDFACDYYFIGDSFETSVPWDKTV   73 (113)
Q Consensus         1 ~~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~---G---~~~g~~W~~~Rf~~p-YLRd~l~~~G~~~DT~ETA~~Ws~v~   73 (113)
                      +++.|+|+.++++.+.+++.+++.++|+..-   -   +...+-|. .|-..+ .++    ..|. ..+.++++|||+++
T Consensus       291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~~~~~----~~g~-~~~~Dv~vP~~~l~  364 (476)
T 3pm9_A          291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEISPAQK----PEGG-SIKHDISVPVAAVP  364 (476)
T ss_dssp             EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHHHHTG----GGCC-EECCEEECCGGGHH
T ss_pred             EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHHHHHh----hcCC-ceeEEEEeeHHHHH
Confidence            3678899988888889999999999987431   1   12334564 444443 333    3354 68999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEee
Q psy10393         74 LLCINVKKRLTRECTGRWLPVLLSIKVR  101 (113)
Q Consensus        74 ~l~~~V~~al~~a~~~~g~~~~v~ch~S  101 (113)
                      ++++.+++.+.+...  +.+..+++|++
T Consensus       365 ~~~~~~~~~~~~~~~--~~~~~~~gH~g  390 (476)
T 3pm9_A          365 QFIEQANAAVVALIP--GARPVPFGHLG  390 (476)
T ss_dssp             HHHHHHHHHHHHHST--TCEEEEEEEGG
T ss_pred             HHHHHHHHHHHHhcC--CCeEEEEEEeC
Confidence            999999887765532  56777888876

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*

Probab=96.50  E-value=0.00021  Score=59.31  Aligned_cols=67  Identities=6%  Similarity=-0.132  Sum_probs=50.4

Q ss_pred             ec-ChHHhHhHHHHHHHHHHHcCCccCCCc----------chhhhhhhhhhhhhhhhhhhhccCceeeeecccccCchHH
Q psy10393          6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL   74 (113)
Q Consensus         6 EG-~~~~V~~~~~~~~~i~~~~GG~~~G~~----------~g~~W~~~Rf~~pYLRd~l~~~G~~~DT~ETA~~Ws~v~~   74 (113)
                      +| ++++|+.+.+++.++++++||....+.          ....|...++..|.+..     .    ++++++|||++++
T Consensus       324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~  394 (524)
T 2exr_A          324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD  394 (524)
T ss_dssp             TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence            78 778899999999999999999755432          22337666665554432     1    3699999999999


Q ss_pred             HHHHHHH
Q psy10393         75 LCINVKK   81 (113)
Q Consensus        75 l~~~V~~   81 (113)
                      +.+.|.+
T Consensus       395 ~~~~v~~  401 (524)
T 2exr_A          395 FNRTVFK  401 (524)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHHH
Confidence            9988865

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*

Probab=96.42  E-value=0.0084  Score=49.37  Aligned_cols=93  Identities=12%  Similarity=-0.126  Sum_probs=57.7

Q ss_pred             EEEEecChHHhHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhh----------------hccCceeeeec
Q psy10393          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC----------------DYYFIGDSFET   65 (113)
Q Consensus         2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~Rf~~pYLRd~l~----------------~~G~~~DT~ET   65 (113)
                      ++.|+|++++++.+.+.+.++++++|+..+.   ...+.+ +-...++|..+.                ..+.+.++.-.
T Consensus       323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  398 (520)
T 1wvf_A          323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS  398 (520)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence            4559999999999999999999999985432   112211 122233333222                01223333344


Q ss_pred             ccccCchHHHHHHHHHHHHHHHhccCCCeeEEEEeec
Q psy10393         66 SVPWDKTVLLCINVKKRLTRECTGRWLPVLLSIKVRW  102 (113)
Q Consensus        66 A~~Ws~v~~l~~~V~~al~~a~~~~g~~~~v~ch~SH  102 (113)
                      ..+|++++++++.+++.+    ++.+.+..++.|+.+
T Consensus       399 p~~~~~l~~~~~~~~~~~----~~~~~~~~~~gh~gd  431 (520)
T 1wvf_A          399 EARGSECKKQAAMAKRVL----HKYGLDYVAEFIVAP  431 (520)
T ss_dssp             ESCHHHHHHHHHHHHHHH----HHTTCCCCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHH----HHcCCCeeEeecccC
Confidence            556689998887775544    456777778888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1wvfa1	279	Flavoprotein subunit of p-cresol methylhydroxylase	98.43
d1e8ga1	287	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	98.01

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=98.43  E-value=2.7e-07  Score=68.22  Aligned_cols=98  Identities=11%  Similarity=-0.063  Sum_probs=70.5

Q ss_pred             EEEEecChHHhHhHHHHHHHHHHHcCCccC---CCcch-hhhhhh---hhhhhhhhhhhhhc-----cCceeeeeccccc
Q psy10393          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---GESNG-RRGYML---TYIIAYIRDFACDY-----YFIGDSFETSVPW   69 (113)
Q Consensus         2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~---G~~~g-~~W~~~---Rf~~pYLRd~l~~~-----G~~~DT~ETA~~W   69 (113)
                      ++.|+|+++.|+.+.+++.++++++||..+   ..... +.|...   .+..|+++...+..     |.+..+-.++++|
T Consensus        82 ~~~l~G~~~~v~~~~~~i~~i~~~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~  161 (279)
T d1wvfa1          82 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARG  161 (279)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCH
T ss_pred             EEEeecCHHHHHHHHHHHHHHHHHCCCceEEeCCCHHHHHHHHHHHHhhhhhhhhhhhhHhhcCCCCCcceeeeeecCCH
Confidence            578899999999999999999999999653   11112 223222   24457776655443     5556666788999


Q ss_pred             CchHHHHHHHHHHHHHHHhccCCCeeEEEEeecc
Q psy10393         70 DKTVLLCINVKKRLTRECTGRWLPVLLSIKVRWM  103 (113)
Q Consensus        70 s~v~~l~~~V~~al~~a~~~~g~~~~v~ch~SH~  103 (113)
                      |+++++++.+++.    +++.|.+..++.|+++-
T Consensus       162 s~l~~~~~~~~~~----~~~~g~~~~~~~H~gdg  191 (279)
T d1wvfa1         162 SECKKQAAMAKRV----LHKYGLDYVAEFIVAPR  191 (279)
T ss_dssp             HHHHHHHHHHHHH----HHHTTCCCCEEEEECSS
T ss_pred             HHHHHHHHHHHHH----HHHhCCCeEEEEecCCc
Confidence            9999998877554    45678999999999853

>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

Probab=98.01  E-value=7.8e-06  Score=60.06  Aligned_cols=98  Identities=7%  Similarity=-0.181  Sum_probs=68.9

Q ss_pred             EEEEecChHHhHhHHHHHHHHHHHcCCccC----CC-cchhhhhhhhhh------hhhhhhhhhhccCceeeeecccccC
Q psy10393          2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----GE-SNGRRGYMLTYI------IAYIRDFACDYYFIGDSFETSVPWD   70 (113)
Q Consensus         2 ~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~----G~-~~g~~W~~~Rf~------~pYLRd~l~~~G~~~DT~ETA~~Ws   70 (113)
                      .+.|+|+++.|+.+.+.+.++++++||..+    .. ....-|...++.      .++......+.+...++.+++++++
T Consensus        81 ~~~l~G~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  160 (287)
T d1e8ga1          81 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSG  160 (287)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHHHHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSH
T ss_pred             eeecccCHHHHHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHHHHHhHhhhhhhhhhHHhhcCCCCeeeeeceeccCh
Confidence            578899999999999999999999999643    11 222233333321      2344444556677788889999986


Q ss_pred             c-hHHHHHHHHHHHHHHHhccCCCeeEEEEeecc
Q psy10393         71 K-TVLLCINVKKRLTRECTGRWLPVLLSIKVRWM  103 (113)
Q Consensus        71 ~-v~~l~~~V~~al~~a~~~~g~~~~v~ch~SH~  103 (113)
                      + ++.+++.    +++.+.+.|.+..++.|+++-
T Consensus       161 ~~l~~~~~~----~~~~~~~~g~~~~~~~H~gdg  190 (287)
T d1e8ga1         161 EDAMMQYAV----TKKRCQEAGLDFIGTFTVGMR  190 (287)
T ss_dssp             HHHHHHHHH----HHHHHHHHTCCCCEEEEECSS
T ss_pred             HHHHHHHHH----HHHHHHHcCCCeEEEEEEcCC
Confidence            4 6666555    456666778899999998764