Psyllid ID: psy10643

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------77
MSKYMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVAREVAIESGSGPTSDALLTDYSIGTGAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQRSVHDGGPGSTPGGFSTPGVRDSVRGGATPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQTEQLRAGLSSLPLPKNDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINIVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVKTGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLELGDS
cccccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEcccccHHHHHccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccEEEEEccccccHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccEccccccccccccccccccccHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHccccccccccccHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MSKYMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWfewldpsikktewsrEEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAqkkeegedvaddprklkpgeidpnpetkparpdpkdmdeDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGievaprqkkkrgidynaeipfekrpapgfydtskeERLRQQHLDGELRSEKEERERKKDKQKLKQrkendiptamlqnlepekkrsklvlpepqisdmELEQVVKLGRATEVAREVAIesgsgptsdalltdysigtgaamktprtpapqtdRILQEAQNMMALthvdtplkgglntpllapdfsgvtpskdhlatpntvlttpfsqrsvhdggpgstpggfstpgvrdsvrggatptpirdrlninpednmlleagdtpaafKSFQTEQLRAglsslplpkndyeivvpeneemeekasgdvdmledQADVDAAAIARMKAQREHEMRLRSQVIqknlprpfdinivlrpsnsdpplseLQKAEELIKQEMITMLHYdaletplsvdkkaakqsniltdeehynflkhrpyrnfslEELEAADDLLKREMDLVKtgmghgdlslESFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMEnkrelncfspgrestprpitykadtssiprrIASLTEDVNRQKEREAVLQERFGALDAQLKQLELGDS
mskymilkrwVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCkarwfewldpsikktewsreEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDqaqkkeegedvaddprklkpgeidpnpetkparpdpkdMDEDELEMLSEARARlantqgkkakrkAREKQLEEARRLAALQKRRElraagievaprqkkkrgidynaeipfekrpapgfydtskeerlrqqhldgelrsekeererkkdkqklkqrkendiptamlqnlepekkrsklvlpepqisdmelEQVVKLGRATEVAREvaiesgsgptsdaLLTDYSIGTgaamktprtpaPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQRSVHDGGPGstpggfstpgvrdsvrggatptpirdrlninPEDNMLLEAGDTPAAFKSFQTEQLRaglsslplpknDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINIVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSniltdeehynflkhrpyrnFSLEELEAADDLLKREMDLVKTGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTraslaskkdraDSLAKRleqnrkhmsleakkatkmenkrelncfspgrestprpitykadtssiprriaSLTEDVNRQKEREAVLQERFgaldaqlkqlelgds
MSKYMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKdmdedelemlSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGelrsekeererkkdkqklkqrkeNDIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVAREVAIESGSGPTSDALLTDYSIGTGAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQRSVHDggpgstpggfstpgVRDSVRGGATPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQTEQLRAGLSSLPLPKNDYeivvpeneemeeKASGDVDMLEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINIVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSNILTDEEHYNFLKHRPYRNFSleeleaaddllKREMDLVKTGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLELGDS
***YMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLD***************************************************************************************************************************************************************************************************************************************************************HV******************************************************************************************************************************************************************************PFDINIVL******************IKQEMITMLHYDALETPLSV********NILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVKTGMGHGDLSLESFTQVWEECLSQVLFLANQNRY*********************************************************************************************************
******L*RWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFL*********************************************LEMLS******************************************************IDYNAEIPFEKRPAPGFYDT***********************************************************EPQISDMELEQVVKLG**********************************************ILQEAQNMMALTHV***************************************************************************************************************PLPKNDYEIVV***********************************************KNLPRPFDINIVLRP**********QKAEELIKQEMITMLHYDALETP**********************LKHRPYRNFSLEELEAADDLLK******************SFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKE**AV*QERFGALD***********
MSKYMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQK**********PRKLKPGEIDPNPE************EDELEMLSEARARL*****************EEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGEL*******************KENDIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVAREVAIESGSGPTSDALLTDYSIGTGAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQRSVHDGGPGSTPGGFSTPGVRDSVRGGATPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQTEQLRAGLSSLPLPKNDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARM*********LRSQVIQKNLPRPFDINIVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVKTGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTRA************AKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQLELGDS
*SKYMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKE*****************************PKDMDEDELEMLSEARARLANT***KAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEERLR******E***EKEERERKKDKQKLKQRK*NDIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVAREVAIESGSGPTSDA***D**IGTGAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQ***************************A*PTPIRDRL*INPE******AGDTPAAFKSFQTEQLRAGLSSLPLPKNDYEIVVPENE************LEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINIVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPLSVD********ILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVKTGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSPGRESTPRPITYKADTSSIPRRIASLTEDVNRQKEREAVLQERFGALDAQLKQL*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSKYMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAxxxxxxxxxxxxxxxxxxxxxxELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEERLRQQHLDGExxxxxxxxxxxxxxxxxxxxxxxxIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVAREVAIESGSGPTSDALLTDYSIGTGAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQRSVHDGGPGSTPGGFSTPGVRDSVRGGATPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQTEQLRAGLSSLPLPKNDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINIVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVKTGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxENKRELNCFSPGRESTPRPITYKADTSSIPRRxxxxxxxxxxxxxxxxxxxxxFGALDAQLKQLELGDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query769 2.2.26 [Sep-21-2011]
O08837802 Cell division cycle 5-lik yes N/A 0.966 0.926 0.614 0.0
Q99459802 Cell division cycle 5-lik yes N/A 0.967 0.927 0.614 0.0
Q6A068802 Cell division cycle 5-lik yes N/A 0.966 0.926 0.614 0.0
Q2KJC1802 Cell division cycle 5-lik yes N/A 0.967 0.927 0.616 0.0
A7SD85805 Cell division cycle 5-rel N/A N/A 0.964 0.921 0.565 0.0
P92948844 Cell division cycle 5-lik yes N/A 0.970 0.883 0.446 1e-157
Q4P652820 Pre-mRNA-splicing factor N/A N/A 0.743 0.697 0.458 1e-126
P0CO94838 Pre-mRNA-splicing factor yes N/A 0.719 0.659 0.471 1e-126
Q7SAF6779 Pre-mRNA-splicing factor N/A N/A 0.713 0.704 0.461 1e-123
P0CO95833 Pre-mRNA-splicing factor N/A N/A 0.712 0.657 0.468 1e-122
>sp|O08837|CDC5L_RAT Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l PE=1 SV=2 Back     alignment and function desciption
 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/798 (61%), Positives = 590/798 (73%), Gaps = 55/798 (6%)

Query: 5   MILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEW 64
           +++K  V    +DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW+EWLDPSIKKTEW
Sbjct: 4   IMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEW 63

Query: 65  SREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKL 124
           SREE+EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE YEFLLD+  +++  E+  DDPRKL
Sbjct: 64  SREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKL 123

Query: 125 KPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLA 184
           KPGEIDPNPETKPARPDP DMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLA
Sbjct: 124 KPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLA 183

Query: 185 ALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEE---------RLR 235
           ALQKRRELRAAGIE+  ++KKKRG+DYNAEIPFEK+PA GFYDTS+E          +LR
Sbjct: 184 ALQKRRELRAAGIEIQKKRKKKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLR 243

Query: 236 QQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQN---LEPEKKRSKLVLPEPQIS 292
           QQ LDGELRSEKE R+RKKDKQ LK++KE+D+P+A+LQ     E  KKRSKLVLP PQIS
Sbjct: 244 QQDLDGELRSEKEGRDRKKDKQHLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQIS 303

Query: 293 DMELEQVVKLGRATEVAREVAIESG-SGPTSDALLTDYSIGTGA-AMKTPRTPAPQTDRI 350
           D EL++VVK+G+A+EVAR+ A ESG +   S  LL++Y++   + A++TPRTPA Q DRI
Sbjct: 304 DAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPASQ-DRI 362

Query: 351 LQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQRSVHDGG 410
           LQEAQN+MALT+VDTPLKGGLNTPL   DFSGVTP +  + TPNTVL+TPF  R+  +G 
Sbjct: 363 LQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPF--RTPSNGA 420

Query: 411 PGSTPGGFSTPGVRDSVRGGATP--TPIRDRLNINPEDNMLLEAGDTPAAFKSFQ---TE 465
            G TP   +TP         ATP  TP+RD+LNINPED M  +  D P+  K  +    E
Sbjct: 421 EGLTPRSGTTP----KPVTNATPGRTPLRDKLNINPEDGM-ADYSD-PSYVKQMERESRE 474

Query: 466 QLRAGLSSLPLPKNDYEIVVPEN--EEMEEKASGDVDMLEDQADVDAAAIARMKAQREHE 523
            LR GL  LP PKND+EIV+PEN  +E+EE+   D   +ED ADVDA   A   A+R  E
Sbjct: 475 HLRLGLLGLPAPKNDFEIVLPENAEKELEEREMDDT-YIEDAADVDARKQAIRDAERVKE 533

Query: 524 MRLRSQVIQKNLPRPFDIN-IVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPL- 581
           M+   + +QK+LPRP ++N  +LRP N +PPL++LQK+EELIK+EMITMLHYD L  P  
Sbjct: 534 MKRMHKAVQKDLPRPSEVNETILRPLNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYE 593

Query: 582 -SVDKKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVKTGMGHGDLS 640
            S +KK         + EH  +L+H PY  FS E+L+ A D+L +EM++VK GM HG+LS
Sbjct: 594 PSGNKKGKNVGFATNNSEHITYLEHSPYEKFSKEDLKKAQDVLVQEMEVVKQGMSHGELS 653

Query: 641 LESFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKM 700
            E++ QVWEEC SQVL+L  Q+RYTRA+LASKKDR +SL KRLE NR HM+ EAK+A KM
Sbjct: 654 SEAYNQVWEECYSQVLYLPAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKM 713

Query: 701 ENK----------------RELNCFSPGRESTPRPI-TY----KADTSSIPRRIASLTED 739
           E K                ++LN      E     + T+    K + S+IPRR+  L ED
Sbjct: 714 EKKMKILLGGYQSRAMGLLKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLKED 773

Query: 740 VNRQKEREAVLQERFGAL 757
           V RQ+ERE  LQ+R+  L
Sbjct: 774 VQRQQEREKELQQRYADL 791
DNA-binding protein involved in cell cycle control. May act as a transcription activator. Also seems to be involved in the second catalytic step of pre-mRNA splicing.
Rattus norvegicus (taxid: 10116)
>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1 SV=2 Back     alignment and function description
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1 SV=2 Back     alignment and function description
>sp|Q2KJC1|CDC5L_BOVIN Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1 Back     alignment and function description
>sp|A7SD85|CDC5L_NEMVE Cell division cycle 5-related protein OS=Nematostella vectensis GN=cdc5l PE=3 SV=1 Back     alignment and function description
>sp|P92948|CDC5L_ARATH Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2 Back     alignment and function description
>sp|Q4P652|CEF1_USTMA Pre-mRNA-splicing factor CEF1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CEF1 PE=3 SV=1 Back     alignment and function description
>sp|P0CO94|CEF1_CRYNJ Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CEF1 PE=3 SV=1 Back     alignment and function description
>sp|Q7SAF6|CEF1_NEUCR Pre-mRNA-splicing factor cef-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cef-1 PE=3 SV=1 Back     alignment and function description
>sp|P0CO95|CEF1_CRYNB Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CEF1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query769
193582381800 PREDICTED: cell division cycle 5-like pr 0.981 0.943 0.634 0.0
242018620787 cell division control protein, putative 0.970 0.947 0.662 0.0
66530332781 PREDICTED: cell division cycle 5-like pr 0.966 0.951 0.645 0.0
380020819781 PREDICTED: cell division cycle 5-like pr 0.966 0.951 0.644 0.0
350404897780 PREDICTED: cell division cycle 5-like pr 0.964 0.951 0.645 0.0
340713281780 PREDICTED: cell division cycle 5-like pr 0.964 0.951 0.645 0.0
383861592780 PREDICTED: cell division cycle 5-like pr 0.964 0.951 0.644 0.0
347968934 932 AGAP002954-PA [Anopheles gambiae str. PE 0.963 0.795 0.643 0.0
312381448 934 hypothetical protein AND_06250 [Anophele 0.975 0.802 0.636 0.0
157123280 904 cell division control protein [Aedes aeg 0.975 0.829 0.645 0.0
>gi|193582381|ref|XP_001951216.1| PREDICTED: cell division cycle 5-like protein-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/805 (63%), Positives = 618/805 (76%), Gaps = 50/805 (6%)

Query: 5   MILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEW 64
           +++K  V    +DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEW
Sbjct: 4   IMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEW 63

Query: 65  SREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKL 124
           SREEDEKLLHLAKLMPTQWRTIAPI+GRTA+QCLERYE+LLDQAQ+KE+GE+V DDPRKL
Sbjct: 64  SREEDEKLLHLAKLMPTQWRTIAPIVGRTASQCLERYEYLLDQAQRKEDGEEVGDDPRKL 123

Query: 125 KPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLA 184
           KPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLA
Sbjct: 124 KPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLA 183

Query: 185 ALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEE---------RLR 235
           ALQKRRELRAAGI V    K+KRGIDYNAEIPFEK+PA GFYDT+ E+         +LR
Sbjct: 184 ALQKRRELRAAGIGVGRGNKRKRGIDYNAEIPFEKKPALGFYDTANEDVDPLAPDFRKLR 243

Query: 236 QQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQNLEPEKKRSKLVLPEPQISDME 295
           QQ+LDGELR E EERERKKDK KLKQRKEN++P AML N EP +K SKLVLPEPQISD E
Sbjct: 244 QQNLDGELRVEIEERERKKDKAKLKQRKENEVPLAMLNNQEPIRKMSKLVLPEPQISDQE 303

Query: 296 LEQVVKLGRATEVAREVAIESGSGPTSDALLTDYSIG-TGAAMKTPRTPAPQTDRILQEA 354
           L+QVVKLGRA+E+ARE+A+E+G    SDALL+DY+        +TPRTP+  TD++LQ+A
Sbjct: 304 LQQVVKLGRASEMAREIAMENGPQQASDALLSDYTPSINNIPGRTPRTPSVSTDKVLQDA 363

Query: 355 QNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQRSVHDGGPGST 414
           QN+MALTHVDTPLKGGLNT L   DF+GVTP +  + TPNT+L TP SQ         + 
Sbjct: 364 QNIMALTHVDTPLKGGLNTELQNVDFNGVTPQRQLITTPNTILGTPLSQ---------AA 414

Query: 415 PGGFSTP-GVRDSVRGGA-TPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQ---TEQLRA 469
             GF TP   R  V+ G  TPTP+RD+L+IN  D+M ++  +TP A K++Q    EQL+A
Sbjct: 415 SDGFQTPQSDRALVKAGMLTPTPLRDQLSINRSDSMEVDIINTPQAMKNYQHQVKEQLKA 474

Query: 470 GLSSLPLPKNDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARMKAQREHEMRLRSQ 529
           GLS+LP PKND+EIVVPE+   +E+     D +EDQ+DV+  +   + A+R+ EM+LRSQ
Sbjct: 475 GLSTLPNPKNDFEIVVPEDHPEDEETVVQKDFIEDQSDVEMRSAEELLARRQLEMKLRSQ 534

Query: 530 VIQKNLPRPFDINIVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPL-----SVD 584
           VIQ+ LPRP D NIVLRP NS+PPL++LQKAEELIKQEMITMLHYDA+ +PL     ++ 
Sbjct: 535 VIQRCLPRPPDTNIVLRPLNSEPPLTDLQKAEELIKQEMITMLHYDAVRSPLPPEVATLT 594

Query: 585 KKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVKTGMGHGDLSLESF 644
           +   K+  ILT+ +H  +L+  PY+ F+ EE+E A  +L +EM++VK GM HG+LSL+SF
Sbjct: 595 QSGPKKQPILTETQHLAYLQAHPYQQFTEEEMENAKQVLIKEMEIVKQGMNHGELSLDSF 654

Query: 645 TQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKR 704
           TQVW ECL QVLFL NQNRYTRA+LASKKDR +SL K+LEQNR HM+ EAKKA KME K 
Sbjct: 655 TQVWGECLGQVLFLPNQNRYTRANLASKKDRIESLEKKLEQNRGHMTKEAKKAGKMEKKI 714

Query: 705 E--LNCFSPGRESTPRPITYKAD-------------------TSSIPRRIASLTEDVNRQ 743
           +  L  +    +   +      D                    S+IP+R+ SLT+DV+RQ
Sbjct: 715 KIILGGYQTRSQGLIKQFITSVDEIEQGHLELSTFQFLQRQEESAIPKRLQSLTDDVDRQ 774

Query: 744 KEREAVLQERFGALDAQLKQLELGD 768
           KERE +LQ++F  L+ + K+L++G+
Sbjct: 775 KEREKILQQKFLDLETRWKELQIGN 799

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242018620|ref|XP_002429772.1| cell division control protein, putative [Pediculus humanus corporis] gi|212514784|gb|EEB17034.1| cell division control protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|66530332|ref|XP_624906.1| PREDICTED: cell division cycle 5-like protein-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380020819|ref|XP_003694276.1| PREDICTED: cell division cycle 5-like protein [Apis florea] Back     alignment and taxonomy information
>gi|350404897|ref|XP_003487253.1| PREDICTED: cell division cycle 5-like protein-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340713281|ref|XP_003395173.1| PREDICTED: cell division cycle 5-like protein-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383861592|ref|XP_003706269.1| PREDICTED: cell division cycle 5-like protein [Megachile rotundata] Back     alignment and taxonomy information
>gi|347968934|ref|XP_311945.4| AGAP002954-PA [Anopheles gambiae str. PEST] gi|333467774|gb|EAA08116.4| AGAP002954-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312381448|gb|EFR27195.1| hypothetical protein AND_06250 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157123280|ref|XP_001660095.1| cell division control protein [Aedes aegypti] gi|108874447|gb|EAT38672.1| AAEL009469-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query769
ZFIN|ZDB-GENE-040426-821801 cdc5l "CDC5 cell division cycl 0.886 0.851 0.583 2e-210
UNIPROTKB|E2RLP4802 CDC5L "Uncharacterized protein 0.888 0.851 0.586 3.2e-210
UNIPROTKB|Q2KJC1802 CDC5L "Cell division cycle 5-l 0.889 0.852 0.587 6.6e-210
UNIPROTKB|F1RQS5803 CDC5L "Uncharacterized protein 0.888 0.850 0.586 1.4e-209
MGI|MGI:1918952802 Cdc5l "cell division cycle 5-l 0.889 0.852 0.584 1.4e-209
RGD|70892802 Cdc5l "cell division cycle 5-l 0.889 0.852 0.584 1.4e-209
UNIPROTKB|Q99459802 CDC5L "Cell division cycle 5-l 0.889 0.852 0.584 2.9e-209
UNIPROTKB|E1BWQ5806 CDC5L "Uncharacterized protein 0.882 0.842 0.582 1.6e-208
UNIPROTKB|E1C6A9807 CDC5L "Uncharacterized protein 0.717 0.684 0.594 4.7e-172
TAIR|locus:2024336844 CDC5 "cell division cycle 5" [ 0.885 0.806 0.421 9.2e-124
ZFIN|ZDB-GENE-040426-821 cdc5l "CDC5 cell division cycle 5-like (S. pombe)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1970 (698.5 bits), Expect = 2.0e-210, Sum P(2) = 2.0e-210
 Identities = 416/713 (58%), Positives = 505/713 (70%)

Query:    16 QDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHL 75
             +DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW+EWLDPSIKKTEWSREE+EKLLH+
Sbjct:    15 EDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHM 74

Query:    76 AKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPET 135
             AKLMPTQWRTIAPIIGRTAAQCLE YE+LLD+A ++E  +DV DDPRKLKPGEIDPNPET
Sbjct:    75 AKLMPTQWRTIAPIIGRTAAQCLEHYEYLLDKAAQRENEDDVGDDPRKLKPGEIDPNPET 134

Query:   136 KPARPDPKXXXXXXXXXXSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAA 195
             KPARPDP           SEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAA
Sbjct:   135 KPARPDPVDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAA 194

Query:   196 GIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEE---------RLRQQHLDGXXXXX 246
             GI++  ++KKKRG+DYNAEIPFEK+PA GFYDTS E+         RLRQQHLDG     
Sbjct:   195 GIDIQKKRKKKRGVDYNAEIPFEKKPAQGFYDTSMEQYDPLEPDFKRLRQQHLDGELRSE 254

Query:   247 XXXXXXXXXXXXXXXXXXNDIPTAMLQNL---EPEKKRSKLVLPEPQISDMELEQVVKLG 303
                               +D+P+A+LQ     E  KKRSKLVLP PQISD ELE+VVKLG
Sbjct:   255 KEDRDRKKDRQKIKKKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELEEVVKLG 314

Query:   304 RATEVAREVAIESG-SGPTSDALLTDYSIGTGA-AMKTPRTPAPQTDRILQEAQNMMALT 361
             +A+E+AR+ A ESG +   S ALL++Y++   + A++TP+TPA Q D+ILQEAQN+MALT
Sbjct:   315 QASEIARQTAEESGITNSASSALLSEYNVTNNSMALRTPKTPAAQ-DKILQEAQNLMALT 373

Query:   362 HVDTPLKGGLNTPLLAPDFSGVTPSKDHLATPNTVLTTPFSQRSVHDXXXXXXXXXXXXX 421
             +VDTPLKGGLNTPL   DFSGVTP +  + TPNTVL+TPF   S H              
Sbjct:   374 NVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPS-H---TGEGLTPHGGL 429

Query:   422 XVRDSVRGGATP--TPIRDRLNINPEDNMLLEAGDTPAAFKSFQTEQ---LRAGLSSLPL 476
               + SV  G TP  TP+RD+LNIN E+  + +  D P+  K  Q E    LR GL SLP+
Sbjct:   430 TPKASV--GVTPGRTPLRDKLNINTEEGGV-DYTD-PSFSKHMQRESREHLRLGLMSLPV 485

Query:   477 PKNDYXXXXXXXXXXXXKASG-DVDMLEDQADVDAAAIARMKAQREHEMRLRSQVIQKNL 535
             PKND+            + +  D   +ED A+++    A   A+RE E+R R   +Q++L
Sbjct:   486 PKNDFEIVLPENAEKELEETEVDESFVEDAAEIELRKQAVRDAEREKELRQRHTSVQRDL 545

Query:   536 PRPFDI--NIVLRPSNSDPPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSNI 593
             PRP ++    +LRP N +PPL++LQ+AEELIK+EMITM+HYD L  P S  KK    ++ 
Sbjct:   546 PRPSEVVNETILRPHNVEPPLTDLQQAEELIKREMITMIHYDCLHHPFSDAKKTKGVNSS 605

Query:   594 LTDEEHYNFLKHRPYRNFSXXXXXXXXXXXKREMDLVKTGMGHGDLSLESFTQVWEECLS 653
               + EH ++L+  PY   S            +EM++VK GMGHGDLS+E++ QVWEEC S
Sbjct:   606 SNNAEHISYLEKTPYEKVSEEELKKAGDLLLQEMEVVKHGMGHGDLSMEAYNQVWEECYS 665

Query:   654 QVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKREL 706
             QVL+L  Q+RYTRA+LASKKDR DSL K+LE NR HM+ EAK+A KME K ++
Sbjct:   666 QVLYLPGQSRYTRANLASKKDRIDSLEKKLEMNRGHMTAEAKRAAKMEKKMKI 718
GO:0003677 "DNA binding" evidence=IEA
GO:0003682 "chromatin binding" evidence=IEA
GO:0051301 "cell division" evidence=IEA
UNIPROTKB|E2RLP4 CDC5L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJC1 CDC5L "Cell division cycle 5-like protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQS5 CDC5L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1918952 Cdc5l "cell division cycle 5-like (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|70892 Cdc5l "cell division cycle 5-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99459 CDC5L "Cell division cycle 5-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWQ5 CDC5L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6A9 CDC5L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2024336 CDC5 "cell division cycle 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6C8F5CEF1_YARLINo assigned EC number0.39530.68270.7301yesN/A
P92948CDC5L_ARATHNo assigned EC number0.44640.97000.8838yesN/A
Q54WZ0CDC5L_DICDINo assigned EC number0.32760.89590.8612yesN/A
O08837CDC5L_RATNo assigned EC number0.61400.96610.9264yesN/A
A7SD85CDC5L_NEMVENo assigned EC number0.56560.96480.9217N/AN/A
P39964CEF1_SCHPONo assigned EC number0.37450.90500.9194yesN/A
Q6A068CDC5L_MOUSENo assigned EC number0.61400.96610.9264yesN/A
Q99459CDC5L_HUMANNo assigned EC number0.61480.96740.9276yesN/A
Q2KJC1CDC5L_BOVINNo assigned EC number0.61600.96740.9276yesN/A
Q4WHG0CEF1_ASPFUNo assigned EC number0.38880.93620.9090yesN/A
P0CO94CEF1_CRYNJNo assigned EC number0.47180.71910.6599yesN/A
C8VBH3CEF1_EMENINo assigned EC number0.46190.67620.6573yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query769
pfam11831363 pfam11831, Myb_Cef, pre-mRNA splicing factor compo 7e-96
COG5147512 COG5147, REB1, Myb superfamily proteins, including 4e-43
cd1165953 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d 5e-30
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-10
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 2e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 5e-09
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 6e-09
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 2e-07
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 4e-06
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 2e-05
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 3e-05
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 3e-05
PLN03091459 PLN03091, PLN03091, hypothetical protein; Provisio 2e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component Back     alignment and domain information 
 Score =  302 bits (775), Expect = 7e-96
 Identities = 155/382 (40%), Positives = 212/382 (55%), Gaps = 38/382 (9%)

Query: 328 DYS-IGTGAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPS 386
           +YS       ++TPRTP  + D I+ EA+N+ ALT   TPL GG NTPL   DF GVTP 
Sbjct: 2   NYSQTNNNTPIRTPRTP-AEEDAIMNEARNLRALTETQTPLLGGENTPLHETDFDGVTPR 60

Query: 387 KDHLATPNTVLTTPFSQRSVHDGGPGSTPGGFSTPGVRDSVRGGATP--TPIRDRLNINP 444
           K  + TPN + T PF        G G+TP              G  P  TP RD+L+IN 
Sbjct: 61  KQQIQTPNPLATPPFRS----GNGIGATPLRGG---------SGYGPLRTPNRDKLSIND 107

Query: 445 EDNMLLEAGDTPAAFKSFQTE---QLRAGLSSLPLPKNDYEIVVPENEEMEEKASGDVDM 501
           E  M  E G+TP   K  + E    L++GL+SLP PKN++E+ +PE EE E +   +  +
Sbjct: 108 EAAM--EVGETPREEKLREDEAKLSLKSGLASLPKPKNEFELELPEEEEEEPEEMEEE-L 164

Query: 502 LEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINIVLRPSNSDPPLSELQKAE 561
            ED AD DA   A  +A+ + E+R RSQVIQ+NLPRP  +++++   + + PL+EL  AE
Sbjct: 165 EEDAADRDARKRAAEEAKEQEELRRRSQVIQRNLPRPSVLDLIVLRPSVNVPLTELDPAE 224

Query: 562 ELIKQEMITMLHYDALETPLSVDKKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADD 621
           +LI +EM  ++ +DAL+ PL   K                  K  PY +F  EELE A  
Sbjct: 225 KLINKEMALLIAHDALKYPLPGGKPK---------------GKAVPYEDFDDEELEEARK 269

Query: 622 LLKREMDLVKTGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAK 681
           L++ E++ +K  MGH + SLE F + W E   QVLFL   N YT    AS++DR ++   
Sbjct: 270 LIEAELEKLKGEMGHQEESLEEFDEAWSELNEQVLFLPGLNAYTDIEDASEEDRIEAYKA 329

Query: 682 RLEQNRKHMSLEAKKATKMENK 703
            LE  RK M  EA+KA K+E K
Sbjct: 330 ALENVRKKMEKEAEKANKLEKK 351

This family is a region of the Myb-Related Cdc5p/Cef1 proteins, in fungi, and is part of the pre-mRNA splicing factor complex. Length = 363
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 769
KOG0050|consensus617 100.0
PF11831231 Myb_Cef: pre-mRNA splicing factor component; Inter 100.0
PLN03091459 hypothetical protein; Provisional 99.95
PLN03212249 Transcription repressor MYB5; Provisional 99.94
COG5147512 REB1 Myb superfamily proteins, including transcrip 99.91
KOG0048|consensus238 99.9
KOG0048|consensus238 99.89
PLN03212249 Transcription repressor MYB5; Provisional 99.87
PLN03091459 hypothetical protein; Provisional 99.84
KOG0049|consensus939 99.77
KOG0049|consensus939 99.63
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.53
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.22
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.2
KOG0051|consensus607 99.16
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.06
KOG0051|consensus607 98.95
KOG0050|consensus617 98.9
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.87
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.74
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.68
COG5147512 REB1 Myb superfamily proteins, including transcrip 98.67
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.57
KOG0457|consensus438 97.68
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.12
KOG0457|consensus438 96.57
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 96.3
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.28
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 96.01
KOG1279|consensus506 96.01
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 95.4
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 95.37
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 94.97
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 94.21
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 94.15
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 94.1
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 94.01
KOG1279|consensus506 93.81
PRK13923170 putative spore coat protein regulator protein YlbO 93.35
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 92.45
PLN031421033 Probable chromatin-remodeling complex ATPase chain 91.94
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 91.85
PRK13923170 putative spore coat protein regulator protein YlbO 91.48
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 88.79
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 88.63
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 82.97
KOG4282|consensus345 82.93
>KOG0050|consensus Back     alignment and domain information 
Probab=100.00  E-value=4e-120  Score=983.64  Aligned_cols=584  Identities=50%  Similarity=0.707  Sum_probs=530.6

Q ss_pred             CcccccccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCCC
Q psy10643          2 SKYMILKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPT   81 (769)
Q Consensus         2 ~ri~~vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G~   81 (769)
                      +||+ +|+|+|++.||++|+.+|++||.+.|.+|+++++.++++||+.||+.||||.++++.||.+||++||++++.++.
T Consensus         1 ~~i~-~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~   79 (617)
T KOG0050|consen    1 MRIE-IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPT   79 (617)
T ss_pred             CceE-EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCC
Confidence            5788 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhh
Q psy10643         82 QWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLA  161 (769)
Q Consensus        82 ~W~~IA~l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~petkpa~Pd~~d~~edE~emL~ea~arlg  161 (769)
                      +|..|+.++|||+.||.+||+++|+..+.....+..-+|++ |+||+++|+|+++|++||++||++||.+||++|+++|+
T Consensus        80 qwrtIa~i~gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~r-Lk~gE~ePn~e~~~aRpd~~dmdEde~eMl~eaRarla  158 (617)
T KOG0050|consen   80 QWRTIADIMGRTSQQCLERYNNLLDVYVSYHYHSEPYIDAK-LKEGEIEPNQETNPARPDGFDMDEDEGEMLSEARARLA  158 (617)
T ss_pred             ccchHHHHhhhhHHHHHHHHHHHHHHHHhhhcccccccccc-cCCCcCCCccccccccCCcccchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998887766778888 99999999999999999999999999999999999999


Q ss_pred             hhhhHhhcCchhhhhHHHHHHHHHHHhHHHHHHcCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcHHHH--------
Q psy10643        162 NTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVAPRQKKKRGIDYNAEIPFEKRPAPGFYDTSKEER--------  233 (769)
Q Consensus       162 N~w~kiAkrk~R~~~~~k~r~~a~Lqkrrelk~agi~~~~~~~k~~~~dy~~~ip~e~~p~~g~~~~~~e~~--------  233 (769)
                      |++|++|+||.|+++++..|+.+.|||||||++|||.+..+|+++++||||++|||++.|++|||||+.|..        
T Consensus       159 Nt~gkka~Rk~reK~l~e~~r~~~lqkrrelraagi~~~~rkr~~~~Idyn~~ipfek~p~~gfydts~e~~~i~~~~f~  238 (617)
T KOG0050|consen  159 NTQGKKAKRKLREKQLEEPRRGAPLQKRRELRAAGILRTTRKRLSHLIDYNISIPFEKPPWNGFYDTSLEGYVILHNHFC  238 (617)
T ss_pred             cccchHHHHHHHHHHHhhccCCccchhHHHHHhhhhhHHhHhhhhccCCcccccccccCCcccccccchhhhhhhhhhhh
Confidence            999999999999999999999999999999999999999888899999999999999999999999999982        


Q ss_pred             -HHhhhhccCcccHHHHHHhhHHHHHHHHhhcCCchHHHhhcccccccccccCCCCCCCChHHHHHHHHhhhhhHHHHHH
Q psy10643        234 -LRQQHLDGELRSEKEERERKKDKQKLKQRKENDIPTAMLQNLEPEKKRSKLVLPEPQISDMELEQVVKLGRATEVAREV  312 (769)
Q Consensus       234 -~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~kr~kl~lp~pq~~~~el~~ivk~g~~~~~a~~~  312 (769)
                       .+++.++|.+..+.|...++.|+++.++.++.+.++++.+... +.||+||+||+||||+.||+.+||+|.|++.++.+
T Consensus       239 ~~~~~~~eg~r~~d~E~~~r~~dk~~~~r~ke~~e~sa~~~~~~-~~Kr~klilpap~Is~~el~~~vK~g~A~~~~R~~  317 (617)
T KOG0050|consen  239 SVDIKVSEGLRVIDDEGSARTSDKEGVSREREHEEISAFIPDLG-SYKRDKLILPAPDISWRELRLFVKFGSALLRSRFI  317 (617)
T ss_pred             HHHHHHhhhhhccccchhhhccccccchhhhhcchhhhhhhhcc-hhccccccCCCCcccHHHHHHHHhcccHHHHHHHH
Confidence             3568899999999999999999999999999999999998876 69999999999999999999999999999999998


Q ss_pred             HhhcCCCCcchhhhccCCCCC-CCCCCCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10643        313 AIESGSGPTSDALLTDYSIGT-GAAMKTPRTPAPQTDRILQEAQNMMALTHVDTPLKGGLNTPLLAPDFSGVTPSKDHLA  391 (769)
Q Consensus       313 ~~~~~~~~~t~~l~~~y~~~~-~~~~~t~r~p~~~~d~i~~ea~n~~~~~~~~tpl~gg~n~~l~~~~~~g~~p~~~~~~  391 (769)
                      + .++  .....||+||+.++ +++.||||||+..+|+|+.||+|++++++++|||+||.|+|||+++|+          
T Consensus       318 ~-~T~--~~~~~ll~dy~~r~~av~~rt~~~~~lk~d~~~ieaqn~~~~~~tk~~l~G~~~~~lh~S~~~----------  384 (617)
T KOG0050|consen  318 Q-ITK--VYGIRLLKDYIFRNLAVDCRTKVKDRLKDDVNKIEAQNSTRRRSTKELLEGDYGSKLHRSCRG----------  384 (617)
T ss_pred             H-hcc--chhhhHHHhhhhhccccccccccCccccchHHHHHHHHHHhhcCccccccCCCCCCcCcccCC----------
Confidence            8 433  23478999998764 479999999998899999999999999999999999999999988773          


Q ss_pred             CCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccCCCCCccccccCCChHHHHHHHHHHHHHhc
Q psy10643        392 TPNTVLTTPFSQRSVHDGGPGSTPGGFSTPGVRDSVRGGATPTPIRDRLNINPEDNMLLEAGDTPAAFKSFQTEQLRAGL  471 (769)
Q Consensus       392 tpn~~~~tp~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tp~rd~~~in~~~~~~~~~~~~p~~~~~~~~~~l~~~l  471 (769)
                       |                                            |+ +||++.++..         +.   ..||.+|
T Consensus       385 -p--------------------------------------------d~-~iN~e~~~~~---------~~---~~Lr~~l  406 (617)
T KOG0050|consen  385 -P--------------------------------------------DE-RINEESGMAL---------KS---RSLRQGL  406 (617)
T ss_pred             -C--------------------------------------------cc-cCChhhhhhh---------HH---HHHHHHH
Confidence             1                                            34 6787766531         11   2499999


Q ss_pred             cCCCCCCCcceeecCCcchhhhhccCCcccccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhCCCCccccccccCCCCC
Q psy10643        472 SSLPLPKNDYEIVVPENEEMEEKASGDVDMLEDQADVDAAAIARMKAQREHEMRLRSQVIQKNLPRPFDINIVLRPSNSD  551 (769)
Q Consensus       472 ~~LP~p~n~~ei~~p~~~~~e~~~~~~~~~~eD~~d~~~r~~~~~~~~e~~~~~rrSqvvQR~LPRP~~v~~ll~~~~~~  551 (769)
                      ++||+||||||||+++++.+           +|          ++.+++.+.+++|||||||+||||+.||.++++.   
T Consensus       407 a~LP~PKNDfEiv~~~dE~E-----------~~----------e~~Ae~~~~~~~RsqviqrdlprP~~~n~~~R~s---  462 (617)
T KOG0050|consen  407 ASLPSPKNDFEIVLSEDEKE-----------ED----------ERIAEEKEFMKRRSQVIQRDLPRPPSVNDAPRVS---  462 (617)
T ss_pred             hcCCCCCCcceeecCcccch-----------hh----------HHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhH---
Confidence            99999999999999443321           11          3334477788999999999999999988554421   


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHhhhhcCCCcccchhhccccccchhhhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy10643        552 PPLSELQKAEELIKQEMITMLHYDALETPLSVDKKAAKQSNILTDEEHYNFLKHRPYRNFSLEELEAADDLLKREMDLVK  631 (769)
Q Consensus       552 ~~~~dl~~Ae~lI~~Em~~LL~~Da~k~P~pg~~~~~~~~~~~~~~~~~~~l~~~~~e~fsde~L~~Ar~lI~~E~~~vk  631 (769)
                                 +    |+.||+||+++||                          +|++||.++|+.|..+|.+|+.   
T Consensus       463 -----------l----mi~ll~~d~~~~P--------------------------~~~d~s~eel~~a~~llk~e~~---  498 (617)
T KOG0050|consen  463 -----------L----MIVLLAYDTLNYP--------------------------PFKDFSQEELDNAYDLLKQEAE---  498 (617)
T ss_pred             -----------H----HHHHHHhcccCCC--------------------------CCCCCCHHHHHHHHHHHHHHHH---
Confidence                       1    9999999999998                          5899999999999999999988   


Q ss_pred             hcCCCCCCChhHHHHHHHHHhhhhhhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCc
Q psy10643        632 TGMGHGDLSLESFTQVWEECLSQVLFLANQNRYTRASLASKKDRADSLAKRLEQNRKHMSLEAKKATKMENKRELNCFSP  711 (769)
Q Consensus       632 ~~~~~~~~~~e~~~~vw~~~~~~~~ylp~~~~Y~~~s~as~~driesl~~~fe~~r~~m~~~AkkaaKlEKKL~~~vllG  711 (769)
                            ++..++| ++|.+|.++++||  ++.|++.++++.+|+  + +.+|+.    |++.|++|+||||||.  +++|
T Consensus       499 ------~l~~dd~-q~~~ec~s~~~~l--~~~~~~~~~~~~~d~--a-e~~le~----m~~~ak~~~klekKlk--~~~~  560 (617)
T KOG0050|consen  499 ------ELVSDDY-QFLKECLSRMQYL--GSTYTRIQVATAEDP--A-EKELEN----MAKKAKRAEKLEKKLK--HLLG  560 (617)
T ss_pred             ------hcChHHH-HHHHHHHHHHHHH--HhhhhhhhhhccCCc--H-HHHHHH----HHHHHHHHHHHHHHHH--HHhh
Confidence                  3456889 9999999999999  999999999999999  4 888887    9999999999999999  9999


Q ss_pred             CcccccCc-------------------cch----hhhhcchHHHHHHHHHHHHHHHHH
Q psy10643        712 GRESTPRP-------------------ITY----KADTSSIPRRIASLTEDVNRQKER  746 (769)
Q Consensus       712 GYQ~Ra~~-------------------~tF----~~E~~AiprRle~L~eeV~~q~~R  746 (769)
                      |||+| .+                   .||    .+|..|+|+|+++|+++|.+|+.+
T Consensus       561 gyq~r-~~l~kq~~~~~~~le~~~~e~~~f~~l~~qE~~Al~~R~~~lq~ev~~q~~~  617 (617)
T KOG0050|consen  561 GYQQR-EMLIKQIHHTLKALEEGQRELYTFEFLYRQEIRALPGRLERLQEEVNKQQEI  617 (617)
T ss_pred             hHHHH-HHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence            99999 55                   677    999999999999999999998753

>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0048|consensus Back     alignment and domain information
>KOG0048|consensus Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0049|consensus Back     alignment and domain information
>KOG0049|consensus Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>KOG0051|consensus Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>KOG0051|consensus Back     alignment and domain information
>KOG0050|consensus Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0457|consensus Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457|consensus Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG1279|consensus Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279|consensus Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG4282|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query769
2dim_A70 Solution Structure Of The Myb_dna-Binding Domain Of 5e-23
2din_A66 Solution Structure Of The Myb_dna-Binding Domain Of 9e-23
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 4e-11
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 5e-09
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 6e-09
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 1e-08
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 2e-08
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 2e-08
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 2e-08
2k9n_A107 Solution Nmr Structure Of The R2r3 Dna Binding Doma 3e-05
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/50 (96%), Positives = 50/50 (100%)
Query: 16 QDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWS 65
          +DEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARW+EWLDPSIKKTEWS
Sbjct: 16 EDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 66 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query769
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 6e-29
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 7e-07
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 4e-25
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 7e-10
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-24
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 2e-22
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-07
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 6e-05
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 7e-22
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 3e-06
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 2e-20
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 1e-07
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 3e-19
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 2e-15
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 3e-18
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 2e-04
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 3e-18
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 5e-11
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 3e-09
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 5e-11
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 4e-09
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 1e-06
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 1e-07
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 1e-06
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 1e-05
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 2e-05
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 8e-05
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 9e-05
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 1e-04
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 2e-04
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 2e-04
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 7e-04
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 3e-04
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 3e-04
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 6e-04
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 3e-04
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 4e-04
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 3e-04
2cjj_A93 Radialis; plant development, DNA-binding protein, 8e-04
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
 Score =  108 bits (272), Expect = 6e-29
 Identities = 48/61 (78%), Positives = 53/61 (86%)

Query: 56  DPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEFLLDQAQKKEEGE 115
             S KKTEWSREE+EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE YEFLLD+A +++ G 
Sbjct: 4   GSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDSGP 63

Query: 116 D 116
            
Sbjct: 64  S 64
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query769
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 100.0
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.95
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.95
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.95
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.95
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.94
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.94
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.91
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.85
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.84
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.84
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.84
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.74
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.56
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.54
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.54
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.53
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.53
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.53
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.48
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.48
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.46
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.46
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.46
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.46
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.44
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.42
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.41
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.41
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.39
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.39
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.37
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.36
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.34
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.32
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.32
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.31
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.3
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.3
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.28
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.28
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.25
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.24
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.16
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.76
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.15
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.11
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.1
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.06
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.59
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.99
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.99
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.98
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 98.95
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.76
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.65
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.6
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.56
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.37
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.32
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.28
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.21
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.16
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.14
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.08
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.05
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 98.04
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 97.87
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 97.63
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 97.59
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.5
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.42
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 97.39
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.22
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.08
2crg_A70 Metastasis associated protein MTA3; transcription 97.04
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 96.99
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 96.89
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 96.66
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 95.68
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.45
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.34
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 96.1
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 95.51
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 95.47
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 95.39
2crg_A70 Metastasis associated protein MTA3; transcription 95.16
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 95.08
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 93.9
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 94.59
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 93.9
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 88.05
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 87.07
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 81.85
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
Probab=100.00  E-value=1.3e-36  Score=295.63  Aligned_cols=152  Identities=29%  Similarity=0.493  Sum_probs=108.7

Q ss_pred             cccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHhCCC-Cccc
Q psy10643          7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPT-QWRT   85 (769)
Q Consensus         7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~ikkg~WT~EEDe~Ll~lvk~~G~-~W~~   85 (769)
                      +++|+||+|||++|+.+|.+||.++|..||..|++||+.||+.||.++|+|.+++++||.+||.+|+.+|..||. +|..
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~   83 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV   83 (159)
T ss_dssp             ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence            678999999999999999999988999999999999999999999999999999999999999999999999995 7999


Q ss_pred             ccc-CCCCCHHHHHHHHHHhhhHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhhhh
Q psy10643         86 IAP-IIGRTAAQCLERYEFLLDQAQKKEEGEDVADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQ  164 (769)
Q Consensus        86 IA~-l~GRT~~QCreRw~~lL~p~ikk~~~~~~~dd~r~l~pg~~~p~petkpa~Pd~~d~~edE~emL~ea~arlgN~w  164 (769)
                      ||. |+|||+.||++||.++|+|.+++++|                               |++|+.+|.+++..+|++|
T Consensus        84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~W-------------------------------T~eEd~~L~~~~~~~g~~W  132 (159)
T 1h89_C           84 IAKHLKGRIGKQCRERWHNHLNPEVKKTSW-------------------------------TEEEDRIIYQAHKRLGNRW  132 (159)
T ss_dssp             HHHTSTTCCHHHHHHHHHHTTCTTSCCSCC-------------------------------CHHHHHHHHHHHHHHCSCH
T ss_pred             HHHHcCCCCHHHHHHHHHHHhCccccccCC-------------------------------ChHHHHHHHHHHHHHCCCH
Confidence            999 89999999999999999999999999                               9999999999999999999


Q ss_pred             hHhhcC-chhhhhHHHHHHHHHHHhH
Q psy10643        165 GKKAKR-KAREKQLEEARRLAALQKR  189 (769)
Q Consensus       165 ~kiAkr-k~R~~~~~k~r~~a~Lqkr  189 (769)
                      .+||+. +||+++.+++||+..|+++
T Consensus       133 ~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          133 AEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999 9999999999999887664
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 769
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 2e-11
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 2e-04
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 7e-10
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 3e-07
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-09
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-06
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 2e-08
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 2e-05
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 1e-07
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 3e-07
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 5e-07
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 3e-04
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 1e-06
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 2e-04
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 1e-06
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 5e-06
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-05
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 1e-05
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 3e-05
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 1e-05
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 1e-05
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 2e-04
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 3e-05
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 2e-04
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 4e-05
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 7e-04
d2cqqa159 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 0.002
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 9/73 (12%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 16 QDEILKAAVMKYGKNQ-----WSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDE 70
          +DE +   V K    +     +  I+  +   +    + R+  +L   ++      +  +
Sbjct: 8  EDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGK 67

Query: 71 KLLHL-AKLMPTQ 82
           +      L+ T+
Sbjct: 68 LVRDDDGNLIKTK 80
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query769
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.6
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.57
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.55
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.48
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.41
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.4
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.38
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.37
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.36
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.32
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.29
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.28
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.21
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.15
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.15
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.1
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.09
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.09
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.06
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.04
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.0
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.92
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.82
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.77
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.7
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.65
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.61
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.36
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.66
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.6
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.12
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.01
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.23
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 94.7
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 94.28
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 94.14
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 93.26
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 91.93
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 91.79
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 80.67
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.4e-16  Score=124.87  Aligned_cols=52  Identities=37%  Similarity=0.602  Sum_probs=49.5

Q ss_pred             cccCCCCHHHHHHHHHHHHHhCCCchhHHHHHhhhcChhhhhhhhccccCCC
Q psy10643          7 LKRWVIFVFQDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPS   58 (769)
Q Consensus         7 vKkG~WT~EEDe~L~~~V~kyG~~~W~~IA~~Lp~Rs~~QCr~RW~~~L~p~   58 (769)
                      +++|+||++||++|+.+|.+||.++|..||+.|++||+.||+.||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            4579999999999999999999889999999999999999999999999984
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure