Psyllid ID: psy10688

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
MVEFYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKENVPMPAEWKKKKSQRRK
cHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccEEcccccccccccEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccEEEEEEEEEcccccccEEEEEEcccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEccccccccEEEEccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccEEEEEEEEEEEccEEEEEEEEEEEcccccccccccccccccccccccccccc
MVEFYtlkyhnekrelhllpplsynkQLSALALDWANQLLEadkfshrpdnkfgeniffytssfyvddKEAIKKAVTAWYNEIEDYreyfdlepplealttgnptghftQVVWNGTTevglglsrnassdfHKVIVVAnyappgnilgrfkenvpmpaewkkkksqrrk
MVEFYTlkyhnekrelhllpPLSYNKQLSALALDWANQLLEADKfshrpdnkfgENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYappgnilgrfkenvpmpaewkkkksqrrk
MVEFYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKENVPMPAEWKKKKSQRRK
***FYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFK******************
MVEFYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKENV***************
MVEFYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKENVPMP************
MVEFYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKENVPMPAEWKKKK*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVEFYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKENVPMPAEWKKKKSQRRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query169 2.2.26 [Sep-21-2011]
A9YME1232 Venom allergen 5 OS=Micro N/A N/A 0.739 0.538 0.340 7e-16
Q9CYL5154 Golgi-associated plant pa yes N/A 0.798 0.876 0.350 3e-14
Q9H4G4154 Golgi-associated plant pa yes N/A 0.798 0.876 0.350 3e-13
P35792164 Pathogenesis-related prot N/A N/A 0.751 0.774 0.335 8e-13
P47032299 Protein PRY1 OS=Saccharom yes N/A 0.745 0.421 0.350 1e-12
P47033 881 Cell wall protein PRY3 OS no N/A 0.721 0.138 0.341 3e-12
Q05968164 Pathogenesis-related prot N/A N/A 0.751 0.774 0.328 5e-12
P36110329 Protein PRY2 OS=Saccharom no N/A 0.733 0.376 0.335 1e-11
P35779211 Venom allergen 3 OS=Solen N/A N/A 0.751 0.601 0.305 1e-11
P09042168 Pathogenesis-related prot N/A N/A 0.757 0.761 0.300 3e-11
>sp|A9YME1|VA5_MICHY Venom allergen 5 OS=Microctonus hyperodae PE=2 SV=1 Back     alignment and function desciption
 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 19  LPPLSYNKQLSALALDWANQL-LEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKA-V 76
           + PL ++ +++ +A  W NQ   E DK  +   N  G+N++   SS   ++   I  A V
Sbjct: 99  IGPLKWDNEIAEIAQRWVNQCTFEHDKCRNTKANSVGQNLYMMGSSEKSENTHDILTASV 158

Query: 77  TAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIV 136
            +WY+E++D+      E   E       TGH++QVVW  TT VG GL +   S F+  +V
Sbjct: 159 NSWYSEVKDFDNRSVREYKFEF-----TTGHYSQVVWGDTTHVGCGLVQYKDSGFYTTMV 213

Query: 137 VANYAPPGNILG 148
             NY+P GN++G
Sbjct: 214 ACNYSPAGNLIG 225

Microctonus hyperodae (taxid: 165561)
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1 OS=Mus musculus GN=Glipr2 PE=2 SV=3 Back     alignment and function description
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3 Back     alignment and function description
>sp|P35792|PR12_HORVU Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|P47032|PRY1_YEAST Protein PRY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRY1 PE=1 SV=1 Back     alignment and function description
>sp|P47033|PRY3_YEAST Cell wall protein PRY3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRY3 PE=1 SV=1 Back     alignment and function description
>sp|Q05968|PR1_HORVU Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description
>sp|P36110|PRY2_YEAST Protein PRY2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRY2 PE=3 SV=1 Back     alignment and function description
>sp|P35779|VA3_SOLRI Venom allergen 3 OS=Solenopsis richteri PE=1 SV=2 Back     alignment and function description
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
242003910251 conserved hypothetical protein [Ixodes s 0.828 0.557 0.440 3e-28
427790149 293 Putative tick salivary antigen-5 protein 0.828 0.477 0.421 7e-26
427790151 293 Putative tick salivary antigen-5 protein 0.828 0.477 0.421 8e-26
242010463244 conserved hypothetical protein [Pediculu 0.781 0.540 0.42 6e-23
195052929167 GH13090 [Drosophila grimshawi] gi|193900 0.792 0.802 0.403 1e-22
91077960 583 PREDICTED: similar to LOC495415 protein 0.792 0.229 0.405 1e-22
240848743162 uncharacterized protein LOC100169092 [Ac 0.828 0.864 0.391 2e-22
346468969201 hypothetical protein [Amblyomma maculatu 0.863 0.726 0.389 4e-22
328719948 406 PREDICTED: hypothetical protein LOC10016 0.810 0.337 0.381 4e-22
193664656 457 PREDICTED: hypothetical protein LOC10016 0.810 0.299 0.381 4e-22
>gi|242003910|ref|XP_002436232.1| conserved hypothetical protein [Ixodes scapularis] gi|215499568|gb|EEC09062.1| conserved hypothetical protein [Ixodes scapularis] Back     alignment and taxonomy information
 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 100/152 (65%), Gaps = 12/152 (7%)

Query: 6   TLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFY 65
           +LK+HN  R +H +PPL ++ QL   A +WA+ L + D+F HR ++K+GENI+   SS  
Sbjct: 110 SLKWHNHYRAIHGVPPLKHSSQLCKYAQEWADNLAKRDRFEHRQEHKYGENIYMAWSSDP 169

Query: 66  VDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSR 125
             +    ++AV +WY+EI+D+R  F  EP     + G  +GHFTQV+W G+TE+G G +R
Sbjct: 170 TKEVTG-REAVDSWYSEIKDHR--FGGEP----RSLG--SGHFTQVIWKGSTELGTGRAR 220

Query: 126 NASSDFHKVIVVANYAPPGNILGRFKENVPMP 157
            A+    K++VVANY P GN++G F +NVP P
Sbjct: 221 TATG---KLLVVANYNPAGNMIGSFAQNVPPP 249

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|427790149|gb|JAA60526.1| Putative tick salivary antigen-5 protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427790151|gb|JAA60527.1| Putative tick salivary antigen-5 protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|242010463|ref|XP_002425987.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212509978|gb|EEB13249.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|195052929|ref|XP_001993398.1| GH13090 [Drosophila grimshawi] gi|193900457|gb|EDV99323.1| GH13090 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|91077960|ref|XP_967490.1| PREDICTED: similar to LOC495415 protein [Tribolium castaneum] gi|270002291|gb|EEZ98738.1| hypothetical protein TcasGA2_TC001293 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|240848743|ref|NP_001155814.1| uncharacterized protein LOC100169092 [Acyrthosiphon pisum] gi|239790246|dbj|BAH71696.1| ACYPI009743 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|346468969|gb|AEO34329.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|328719948|ref|XP_003246907.1| PREDICTED: hypothetical protein LOC100165954 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|193664656|ref|XP_001946213.1| PREDICTED: hypothetical protein LOC100165954 isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
ZFIN|ZDB-GENE-030131-4424 543 glipr2 "GLI pathogenesis-relat 0.846 0.263 0.386 1.8e-19
RGD|1583669150 Glipr2 "GLI pathogenesis-relat 0.792 0.893 0.365 3.7e-16
MGI|MGI:1917770154 Glipr2 "GLI pathogenesis-relat 0.792 0.870 0.365 6e-16
FB|FBgn0031412146 CG16995 [Drosophila melanogast 0.650 0.753 0.390 7.7e-16
UNIPROTKB|F1ST88154 LOC100739112 "Uncharacterized 0.792 0.870 0.352 2.6e-15
UNIPROTKB|J9NX46153 GLIPR2 "Uncharacterized protei 0.792 0.875 0.352 3.3e-15
UNIPROTKB|Q0VCH9154 GLIPR2 "Uncharacterized protei 0.792 0.870 0.352 4.2e-15
UNIPROTKB|Q9H4G4154 GLIPR2 "Golgi-associated plant 0.792 0.870 0.352 4.2e-15
SGD|S000003614 881 PRY3 "Cell wall-associated pro 0.414 0.079 0.437 1.1e-14
SGD|S000001721329 PRY2 "Sterol binding protein i 0.426 0.218 0.421 2e-14
ZFIN|ZDB-GENE-030131-4424 glipr2 "GLI pathogenesis-related 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 240 (89.5 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 63/163 (38%), Positives = 89/163 (54%)

Query:     7 LKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNK-FGENIFFYTSSFY 65
             L+ HN  R+ H  PPL++NK L   A  WA  LL     +H   NK +GEN+++  SS  
Sbjct:    11 LQVHNAYRKQHGAPPLTFNKNLCRSAQQWAEHLLSTKTLAH--SNKGYGENLYYAWSS-- 66

Query:    66 VDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSR 125
              + K    +AV +WY EI+DY   F   P   +      TGHFTQVVW  T E+G+GL+ 
Sbjct:    67 ANKKLTGHEAVDSWYGEIKDYN--FS-RPGFSS-----KTGHFTQVVWKDTKELGVGLA- 117

Query:   126 NASSDFHKVIVVANYAPPGNIL--GRFKENV-PMPAEWKKKKS 165
                +D + + VV  Y P GNI   G F++NV P  ++  +K +
Sbjct:   118 ---TDGNTIFVVGQYLPAGNIANAGYFEKNVLPTGSKLDQKST 157
GO:0005576 "extracellular region" evidence=IEA
RGD|1583669 Glipr2 "GLI pathogenesis-related 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1917770 Glipr2 "GLI pathogenesis-related 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0031412 CG16995 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1ST88 LOC100739112 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NX46 GLIPR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCH9 GLIPR2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H4G4 GLIPR2 "Golgi-associated plant pathogenesis-related protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
SGD|S000003614 PRY3 "Cell wall-associated protein involved in export of acetylated sterols" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
SGD|S000001721 PRY2 "Sterol binding protein involved in the export of acetylated sterols" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CYL5GAPR1_MOUSENo assigned EC number0.35030.79880.8766yesN/A
Q9H4G4GAPR1_HUMANNo assigned EC number0.35030.79880.8766yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
cd05382132 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-lik 1e-42
cd05384129 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like ex 6e-28
cd05380144 cd05380, SCP_euk, SCP_euk: SCP-like extracellular 3e-25
smart00198144 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 fa 4e-23
pfam00188121 pfam00188, CAP, Cysteine-rich secretory protein fa 9e-21
cd00168122 cd00168, SCP, SCP: SCP-like extracellular protein 5e-18
cd05381136 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like ex 5e-16
cd05385144 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-l 3e-14
cd05383138 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellu 3e-12
cd05379122 cd05379, SCP_bacterial, SCP_bacterial: SCP-like ex 2e-08
cd05559136 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracel 2e-08
COG2340207 COG2340, COG2340, Uncharacterized protein with SCP 7e-07
>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family Back     alignment and domain information 
 Score =  138 bits (349), Expect = 1e-42
 Identities = 52/140 (37%), Positives = 75/140 (53%), Gaps = 14/140 (10%)

Query: 7   LKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYV 66
           L  HNE R LH  PPL  +K+L+  A  WA +L  + K  H   + +GEN+ + + S   
Sbjct: 7   LDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGS--- 63

Query: 67  DDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRN 126
                 ++AV +WYNEI+ Y   F+             TGHFTQVVW  +TE+G+G++++
Sbjct: 64  GPDLTGEEAVDSWYNEIKKYD--FNKPGFSSK------TGHFTQVVWKSSTELGVGVAKS 115

Query: 127 ASSDFHKVIVVANYAPPGNI 146
                  V VVA Y P GN+
Sbjct: 116 KKG---CVYVVARYRPAGNV 132

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms. Length = 132
>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi Back     alignment and domain information
>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes Back     alignment and domain information
>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains Back     alignment and domain information
>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family Back     alignment and domain information
>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes Back     alignment and domain information
>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily Back     alignment and domain information
>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family Back     alignment and domain information
>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family Back     alignment and domain information
>gnl|CDD|240179 cd05379, SCP_bacterial, SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea Back     alignment and domain information
>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians Back     alignment and domain information
>gnl|CDD|225218 COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 169
cd05381136 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula 100.0
cd05382132 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracel 100.0
cd05384129 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula 100.0
smart00198144 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extra 100.0
cd05385144 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extrac 100.0
cd05383138 SCP_CRISP SCP_CRISP: SCP-like extracellular protei 100.0
KOG3017|consensus225 100.0
cd05559136 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular prot 100.0
cd05380144 SCP_euk SCP_euk: SCP-like extracellular protein do 100.0
cd00168122 SCP SCP: SCP-like extracellular protein domain, fo 100.0
PF00188124 CAP: Cysteine-rich secretory protein family; Inter 99.87
TIGR02909127 spore_YkwD uncharacterized protein, YkwD family. M 99.78
cd05379122 SCP_bacterial SCP_bacterial: SCP-like extracellula 99.65
COG2340207 Uncharacterized protein with SCP/PR1 domains [Func 99.2
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily Back     alignment and domain information 
Probab=100.00  E-value=6.5e-41  Score=233.68  Aligned_cols=135  Identities=33%  Similarity=0.555  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHHHhhcCCcccCCCCCcccchhhhccCCcCCchHHHHHHHHHHHHHH
Q psy10688          4 FYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEI   83 (169)
Q Consensus         4 ~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~~Geni~~~~~~~~~~~~~~~~~~v~~W~~e~   83 (169)
                      ++||++||.+|+.++|++|+||++||..|+.||++|+..+...|+.. .+||||+ +...    ....+..+|+.|++|.
T Consensus         2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~GeNi~-~~~~----~~~~~~~~v~~W~~e~   75 (136)
T cd05381           2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNG-PYGENLF-WGSG----GNWSAADAVASWVSEK   75 (136)
T ss_pred             hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCC-CCCceEE-EecC----CCCCHHHHHHHHHhcc
Confidence            68999999999999999999999999999999999876667777654 4899998 5543    2335778999999999


Q ss_pred             hccccccCCCCCccCCCCCCCchhHHHHHHhhCCeeeEEEEEecCCCCCcEEEEEEecCCCCCcccccc
Q psy10688         84 EDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKE  152 (169)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~vC~Y~p~gN~~g~~~~  152 (169)
                      ..|+  +  ..+  .+..+..++|||||||+++++||||++.|....  ..++||+|+|+||+.|+.+|
T Consensus        76 ~~y~--~--~~~--~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~--~~~vvC~Y~p~gn~~g~~~Y  136 (136)
T cd05381          76 KYYD--Y--DSN--TCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGG--GVFIICNYDPPGNYIGQRPY  136 (136)
T ss_pred             ccCC--C--CCC--CcCCCccchHHHHHHHHhcCEeceEEEEeCCCC--cEEEEEEeeCCCCCCCCCCC
Confidence            9999  7  555  444456899999999999999999999985532  48999999999999999876

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family Back     alignment and domain information
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi Back     alignment and domain information
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains Back     alignment and domain information
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family Back     alignment and domain information
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family Back     alignment and domain information
>KOG3017|consensus Back     alignment and domain information
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians Back     alignment and domain information
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes Back     alignment and domain information
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes Back     alignment and domain information
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins Back     alignment and domain information
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family Back     alignment and domain information
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea Back     alignment and domain information
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
4aiw_A154 Gapr-1 With Bound Inositol Hexakisphosphate Length 3e-14
1smb_A154 Crystal Structure Of Golgi-Associated Pr-1 Protein 4e-14
2vzn_A218 Crystal Structure Of The Major Allergen From Fire A 2e-11
2dda_A211 Crystal Structure Of Pseudechetoxin From Pseudechis 2e-11
2ddb_A210 Crystal Structure Of Pseudecin From Pseudechis Porp 2e-10
1u53_A196 Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein F 2e-09
1qnx_A209 Ves V 5, An Allergen From Vespula Vulgaris Venom Le 2e-09
1xta_A221 Crystal Structure Of Natrin, A Snake Venom Crisp Fr 1e-06
1xx5_A221 Crystal Structure Of Natrin From Naja Atra Snake Ve 2e-06
3nt8_A424 Crystal Structure Of Na-Asp-1 Length = 424 3e-06
1rc9_A221 Crystal Structure Of Stecrisp, A Member Of Crisp Fa 6e-06
3q2r_A205 Crystal Structure Of Sglipr1 Soaked With Zinc Chlor 1e-05
1cfe_A135 P14a, Nmr, 20 Structures Length = 135 2e-05
1wvr_A221 Crystal Structure Of A Crisp Family Ca-Channel Bloc 4e-05
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate Length = 154 Back     alignment and structure 
Iteration: 1

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 22/157 (14%)
Query: 6   TLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDN---KFGENIFFYTS 62
            LK HNE R+ H +PPL   K L+  A  ++  L       H P++   + GEN+ +  +
Sbjct: 13  VLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAW--A 70
Query: 63  SFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLG 122
           S+    KE   +    WY+EI++Y    + + P    T+G  TGHFT +VW  T ++G+G
Sbjct: 71  SYDQTGKEVADR----WYSEIKNY----NFQQP--GFTSG--TGHFTAMVWKNTKKMGVG 118
Query: 123 LSRNASSDFHKVIVVANYAPPGNIL--GRFKENVPMP 157
               AS+      VVA Y P GN++  G F+ENV  P
Sbjct: 119 ---KASASDGSSFVVARYFPAGNVVNEGFFEENVLPP 152
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein Length = 154 Back     alignment and structure
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant Venom, Sol I 3 Length = 218 Back     alignment and structure
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis Australis Length = 211 Back     alignment and structure
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis Porphyriacus Length = 210 Back     alignment and structure
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The Nematode Parasite Necator Americanus And A Vaccine Antigen For Human Hookworm Infection Length = 196 Back     alignment and structure
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom Length = 209 Back     alignment and structure
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From Taiwan Cobra (Naja Atra) Length = 221 Back     alignment and structure
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom Length = 221 Back     alignment and structure
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1 Length = 424 Back     alignment and structure
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family From Trimeresurus Stejnegeri Refined At 1.6 Angstroms Resolution: Structual Relationship Of The Two Domains Length = 221 Back     alignment and structure
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride Length = 205 Back     alignment and structure
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures Length = 135 Back     alignment and structure
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker Derived From Snake Venom Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
4aiw_A154 Golgi-associated plant pathogenesis-related prote; 5e-44
1cfe_A135 Pathogenesis-related protein P14A; PR-1 proteins, 8e-41
2vzn_A218 Venom allergen 3; major FIRE ANT allergen, SOL I 3 9e-33
1qnx_A209 VES V 5, antigen 5; allergen, vespid venom; 1.90A 1e-32
1xta_A221 Natrin 1; crisp, serine protease, ION channel bloc 2e-32
1u53_A196 Secreted protein Asp-2; antibiotic; 1.56A {Necator 3e-31
2ddb_A210 Pseudecin, channel blocker; crisp, snake venom, CN 6e-31
3q2u_A205 Glioma pathogenesis-related protein 1; crisp, memb 6e-29
3nt8_A424 Ancylostoma secreted protein 1; pathogenesis relat 1e-28
3nt8_A 424 Ancylostoma secreted protein 1; pathogenesis relat 4e-27
3u3l_C233 Tablysin 15; CAP domain, alphavbeta3 integrin, sal 3e-23
3s6s_A206 AC-Asp-7; pathogenesis-related protein, SCP/TAPS, 4e-13
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A* Length = 154 Back     alignment and structure
 Score =  142 bits (359), Expect = 5e-44
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 22/156 (14%)

Query: 7   LKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDN---KFGENIFFYTSS 63
           LK HNE R+ H +PPL   K L+  A  ++  L       H P++   + GEN+ + +  
Sbjct: 14  LKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYD 73

Query: 64  FYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGL 123
               +          WY+EI++Y    + + P       + TGHFT +VW  T ++G+G 
Sbjct: 74  QTGKE------VADRWYSEIKNY----NFQQP----GFTSGTGHFTAMVWKNTKKMGVGK 119

Query: 124 SRNASSDFHKVIVVANYAPPGNILGR--FKENVPMP 157
           +  +        VVA Y P GN++    F+ENV  P
Sbjct: 120 ASASD---GSSFVVARYFPAGNVVNEGFFEENVLPP 152
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1 Length = 135 Back     alignment and structure
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta} Length = 218 Back     alignment and structure
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1 Length = 209 Back     alignment and structure
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A Length = 221 Back     alignment and structure
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus} Length = 196 Back     alignment and structure
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A Length = 210 Back     alignment and structure
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A Length = 205 Back     alignment and structure
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424 Back     alignment and structure
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424 Back     alignment and structure
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C* Length = 233 Back     alignment and structure
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A Length = 206 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
4aiw_A154 Golgi-associated plant pathogenesis-related prote; 100.0
1cfe_A135 Pathogenesis-related protein P14A; PR-1 proteins, 100.0
1u53_A196 Secreted protein Asp-2; antibiotic; 1.56A {Necator 100.0
2ddb_A210 Pseudecin, channel blocker; crisp, snake venom, CN 100.0
3q2u_A205 Glioma pathogenesis-related protein 1; crisp, memb 100.0
1xta_A221 Natrin 1; crisp, serine protease, ION channel bloc 100.0
3u3l_C233 Tablysin 15; CAP domain, alphavbeta3 integrin, sal 100.0
2vzn_A218 Venom allergen 3; major FIRE ANT allergen, SOL I 3 100.0
1qnx_A209 VES V 5, antigen 5; allergen, vespid venom; 1.90A 100.0
3nt8_A424 Ancylostoma secreted protein 1; pathogenesis relat 100.0
3nt8_A 424 Ancylostoma secreted protein 1; pathogenesis relat 100.0
3s6s_A206 AC-Asp-7; pathogenesis-related protein, SCP/TAPS, 100.0
4ifa_A339 Extracellular protein containing A SCP domain; vac 99.63
4h0a_A323 Uncharacterized protein; CAP protein family, cyste 99.33
3plv_C21 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; 81.43
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-47  Score=270.44  Aligned_cols=141  Identities=36%  Similarity=0.653  Sum_probs=124.4

Q ss_pred             ChHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHHHhhcCCcccCC---CCCcccchhhhccCCcCCchHHHHHHHH
Q psy10688          1 MVEFYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRP---DNKFGENIFFYTSSFYVDDKEAIKKAVT   77 (169)
Q Consensus         1 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~C~~~~~~~~~~---~~~~Geni~~~~~~~~~~~~~~~~~~v~   77 (169)
                      +|+++||++||.+|+.|++++|+||++||..||.||++|+..+.+.|++   ...+||||+ ++..     ..++.++|+
T Consensus         8 ~f~~~iL~~HN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~~~~~hs~~~~~~~~GeNl~-~~~~-----~~~~~~~v~   81 (154)
T 4aiw_A            8 QFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLA-WASY-----DQTGKEVAD   81 (154)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCCCCHHHHTTSSEEEEE-EESS-----CCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhhhcccccccccCCCCCCCeeeE-ecCC-----CCCHHHHHH
Confidence            4899999999999999999999999999999999999999888999975   357899998 6543     235678999


Q ss_pred             HHHHHHhccccccCCCCCccCCCCCCCchhHHHHHHhhCCeeeEEEEEecCCCCCcEEEEEEecCCCCCccc--cccccC
Q psy10688         78 AWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGR--FKENVP  155 (169)
Q Consensus        78 ~W~~e~~~~~~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~vC~Y~p~gN~~g~--~~~nv~  155 (169)
                      .||+|..+|+  |  ..+  .+.  ..++|||||||++|++||||++.|..+   ..++||+|+|+||+.|+  |..||.
T Consensus        82 ~W~~E~~~y~--~--~~~--~~~--~~~gHfTQ~VW~~t~~vGCg~a~c~~~---~~~vVC~Y~P~GN~~g~~~y~~NV~  150 (154)
T 4aiw_A           82 RWYSEIKNYN--F--QQP--GFT--SGTGHFTAMVWKNTKKMGVGKASASDG---SSFVVARYFPAGNVVNEGFFEENVL  150 (154)
T ss_dssp             HHHGGGGGCC--T--TSC--SCC--TTTHHHHHHHCTTCCEEEEEEEECTTS---CEEEEEEEESCCCCCSTTHHHHHSC
T ss_pred             HHHHHhhhcc--c--CCC--CcC--CCcCCeeeeehhhhceeeeEEEEcCCC---CEEEEEEEeCCCccCCccchHHhCC
Confidence            9999999999  9  766  565  679999999999999999999997432   37999999999999976  899999


Q ss_pred             CCc
Q psy10688        156 MPA  158 (169)
Q Consensus       156 ~p~  158 (169)
                      ||.
T Consensus       151 pPk  153 (154)
T 4aiw_A          151 PPK  153 (154)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            996
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1 Back     alignment and structure
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus} Back     alignment and structure
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A Back     alignment and structure
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A Back     alignment and structure
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A Back     alignment and structure
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C* Back     alignment and structure
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta} Back     alignment and structure
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1 Back     alignment and structure
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Back     alignment and structure
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Back     alignment and structure
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A Back     alignment and structure
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis} Back     alignment and structure
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp} Back     alignment and structure
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 169
d1qnxa_209 d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jac 5e-24
d1smba_149 d.111.1.1 (A:) Golgi-associated PR-1 protein {Huma 2e-23
d1rc9a1164 d.111.1.1 (A:1-164) Cysteine-rich secretory protei 4e-23
d1cfea_135 d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1 2e-20
>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

 Score = 91.1 bits (225), Expect = 5e-24
 Identities = 46/161 (28%), Positives = 64/161 (39%), Gaps = 25/161 (15%)

Query: 7   LKYHNEKRELH-----------LLPP------LSYNKQLSALALDWANQ-LLEADKFSHR 48
           LK HN+ R+               PP      L +N +L+ +A  WANQ     D     
Sbjct: 50  LKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTCRDV 109

Query: 49  PDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHF 108
              + G+N+    S+    D     K V  W +E++DY                  TGH+
Sbjct: 110 AKYQVGQNVALTGSTAAKYDD--PVKLVKMWEDEVKDYNPKKKFSGN-----DFLKTGHY 162

Query: 109 TQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGR 149
           TQ+VW  T EVG G  +     +HK  +V NY P GN    
Sbjct: 163 TQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNE 203
>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 149 Back     information, alignment and structure
>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]} Length = 164 Back     information, alignment and structure
>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
d1cfea_135 Pathogenesis-related protein 1 (PR1) {Tomato (Lyco 100.0
d1smba_149 Golgi-associated PR-1 protein {Human (Homo sapiens 100.0
d1rc9a1164 Cysteine-rich secretory protein (SteCRISP) {Chines 100.0
d1qnxa_209 Insect allergen 5 (AG5) {Yellow jacket (Vespula vu 100.0
>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

Probab=100.00  E-value=6.9e-44  Score=245.79  Aligned_cols=133  Identities=26%  Similarity=0.403  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHHHhhcCCcccCCCCCcccchhhhccCCcCCchHHHHHHHHHHHH
Q psy10688          2 VEFYTLKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYN   81 (169)
Q Consensus         2 ~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~~Geni~~~~~~~~~~~~~~~~~~v~~W~~   81 (169)
                      .+++||++||.+|+.++|++|+||++||..||.||++|...+.+.|+   .+||||+ ++.     ...++.++|+.||+
T Consensus         3 ~~q~~l~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~~~~~~~~~~---~~GeNi~-~~~-----~~~~~~~av~~W~~   73 (135)
T d1cfea_           3 SPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHS---GAGENLA-KGG-----GDFTGRAAVQLWVS   73 (135)
T ss_dssp             SHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSC---SSSBCCE-ECS-----SSCCHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHcCCCcCEECHHHHHHHHHHHHHHhhCCCcccC---cccccee-ccC-----CCCCHHHHHHHHHh
Confidence            46789999999999999999999999999999999999877777665   5799998 543     23457899999999


Q ss_pred             HHhccccccCCCCCccCCCCCCCchhHHHHHHhhCCeeeEEEEEecCCCCCcEEEEEEecCCCCCcccccc
Q psy10688         82 EIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKE  152 (169)
Q Consensus        82 e~~~~~~~~~~~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~vC~Y~p~gN~~g~~~~  152 (169)
                      |..+|+  |  ..+  .+.....++|||||||++|++||||++.|..+   .+++||+|+|+||+.|+++|
T Consensus        74 E~~~y~--~--~~~--~~~~~~~~ghftQmvW~~t~~vGCa~~~c~~~---~~~vVC~Y~P~GN~~g~~pY  135 (135)
T d1cfea_          74 ERPSYN--Y--ATN--QCVGGKKCRHYTQVVWRNSVRLGCGRARCNNG---WWFISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             TGGGEE--G--GGT--EECSSSCCSSHHHHHCTTCCEEEEEEEECTTS---SEEEEEECSSCCSCTTSCCC
T ss_pred             hccccc--c--ccc--cCCCCcccchhheeeehhheEeeEEEEEECCC---CEEEEEEEeCCCCcCCcCCC
Confidence            999999  8  554  34445789999999999999999999997432   37899999999999999886
>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]} Back     information, alignment and structure
>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]} Back     information, alignment and structure