Psyllid ID: psy10776

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800---
MTVSETNFICHMLVTMLLSINSVIEKKNNTNYSSIMWNIRHTLRTKTSQLIIWILEPNRSTNLRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHDIGNSNSKLNREVYIACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERIRIRQKRCHLYVHEKYLKPEYRAKTAAYKKEQPLEYLVKDSIKHESMIETIHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAIDEVDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMNVKKLM
ccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEcccccHHHHHHHHHHcccccccccccHHHHHHHHHcccccccHHcccccHHcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccHHHHccccccccccEEEEEEcccccccccccccccccccccccccEEEEEcccHHHHHHHHccccccEEEEEEEcccEEEEEcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHccccccEEcccccccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccc
ccccHHHHHHHHHHccEEEccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHEccccccHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEcccccccHHHHHHHHHccccccccccccHHcccccccccccccHccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEcccccccccccHHHHHHccccccHHHccccEEEEcccccccccccccccEEEEEccccccccccccccccccEEcccccccccccEEccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHcHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHcHHHHccHHHHEccccccccEEcccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcEEccccccccccHHHHHHHHHHHHHccccHHHHccccccccccccc
MTVSETNFICHMLVTMLLSINSVIekknntnysSIMWNIRHTLRTKTSQLIIWIlepnrstnlRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHdignsnsklNREVYIACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLthekapwyceesypkswqlddvegpeRIRIRQKRCHLyvhekylkpeyraktaaykkeqpleyLVKDSIKHESMIETIHTSESVTYMCCthlitpskqiQGELLITsaglkfipfneshnfvtNAVTEEFSEHEqvmsegknseepnetgaeTKRIHNaidevdisndvnsdqKIEVRENLSENAAQNTKVEKLNKktttktkknvspdtegivyrtddiISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNelstcnlpnrmssdlLSDTIQLWREGHLTNWAYLMILNKMAgrsyndlmqypvlpfilsdyksatldltdpksfrnlkkpmavqdkkneshyvnNYNYLAREMCDavggvnqepyhygshysnsgtVLHFLvrippftsmflnyqdnnfdlpdrtfhnlattwrltssesttDVKELIPELFYLADILVnnegfdfgvrqngqrvdsvilppwapdprTFIMVHRQSLESelvsenlphWIDLVFGYKQSGKAAVDAINVfhpatyygfdiaaipdplerTAWETMIRTYgqtprqlfksahpmnvkklm
mtvsetnfICHMLVTMLLSINSVIEKKNNTNYSSIMWNIRHTLRTKTSQLIIWilepnrstnlRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSiinhdignsnsKLNREVYIACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYnkqlftkdVWNRIILNLTHEKAPWYCEESypkswqlddvegPERIRIRqkrchlyvhekylkpeyraktaaykkeqpleYLVKDSIKHESMIETIHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVmsegknseepnetgAETKRIhnaidevdisndvnSDQKIEVRenlsenaaqntkveklnkktttktkknvspdtegivyrtddiiSVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLdltdpksfrnlkkpmavqdkkneshYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTwrltssesttdVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYgqtprqlfksahpmnvkklm
MTVSETNFICHMLVTMLLSINSVIEKKNNTNYSSIMWNIRHTLRTKTSQLIIWILEPNRSTNLRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHDIGNSNSKLNREVYIACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERIRIRQKRCHLYVHEKYLKPEYRAKTAAYKKEQPLEYLVKDSIKHESMIETIHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAIDEVDISNDVNSDQKIEVRENLSENAAQntkveklnkktttktkknVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMNVKKLM
*****TNFICHMLVTMLLSINSVIEKKNNTNYSSIMWNIRHTLRTKTSQLIIWILEPNRSTNLRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHDIGNSNSKLNREVYIACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERIRIRQKRCHLYVHEKYLKPEYRAKTAAYKKEQPLEYLVKDSIKHESMIETIHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAV*************************************************************************************GIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLT*********************HYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQT*****************
******N*ICHMLVTMLLS***************IMWNIRHTLRTKTSQLIIWILEPNRSTNLRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHDIGNSNSKLNREVYIAC********************************ITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERIRIRQKRCHLYVHEKYLKP*************************************************************AGLKFIPFNESHN****************************************DEVDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNL**********DTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPM******
MTVSETNFICHMLVTMLLSINSVIEKKNNTNYSSIMWNIRHTLRTKTSQLIIWILEPNRSTNLRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHDIGNSNSKLNREVYIACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERIRIRQKRCHLYVHEKYLKPEYRAKTAAYKKEQPLEYLVKDSIKHESMIETIHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEE**********************ETKRIHNAIDEVDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKK**********PDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMNVKKLM
**VSETNFICHMLVTMLLSINSVIEKKNNTNYSSIMWNIRHTLRTKTSQLIIWILEPNRSTNLRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHDIGNSNSKLNREVYIACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERIRIRQKRCHLYVHEKYLKPEY***********************************************SKQIQGELLITSAGLKFIPFNES*NFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAIDEVDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKS**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTVSETNFICHMLVTMLLSINSVIEKKNNTNYSSIMWNIRHTLRTKTSQLIIWILEPNRSTNLRIFLINTLRNEIYLKEILTNLFVNNNLEIKFILFLWELIYCCKLNNDDLRVCYEFEAKLKSIINHDIGNSNSKLNREVYIACKEFKAAQNEWVLAQMTHINKMILTRYEQLVRQITDTCIASTQQCLHRQNAVQKTLLGEIKAIYNKQLFTKDVWNRIILNLTHEKAPWYCEESYPKSWQLDDVEGPERIRIRQKRCHLYVHEKYLKPEYRAKTAAYKKEQPLEYLVKDSIKHESMIETIHTSESVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAIDEVDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMNVKKLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query803 2.2.26 [Sep-21-2011]
P97412 3788 Lysosomal-trafficking reg yes N/A 0.427 0.090 0.621 1e-128
Q9TTK4 3796 Lysosomal-trafficking reg yes N/A 0.427 0.090 0.618 1e-128
Q99698 3801 Lysosomal-trafficking reg yes N/A 0.427 0.090 0.612 1e-125
Q86JF2 4118 BEACH domain-containing p yes N/A 0.435 0.084 0.5 1e-101
Q6VNB8 3508 WD repeat and FYVE domain no N/A 0.708 0.162 0.358 5e-90
Q8IZQ1 3526 WD repeat and FYVE domain no N/A 0.433 0.098 0.469 1e-88
Q6ZNJ1 2754 Neurobeachin-like protein no N/A 0.423 0.123 0.419 9e-81
Q6ZQA0 2742 Neurobeachin-like protein no N/A 0.423 0.123 0.417 2e-80
Q6ZS81 3184 WD repeat- and FYVE domai no N/A 0.432 0.108 0.422 6e-80
Q8NFP9 2946 Neurobeachin OS=Homo sapi no N/A 0.420 0.114 0.425 4e-79
>sp|P97412|LYST_MOUSE Lysosomal-trafficking regulator OS=Mus musculus GN=Lyst PE=1 SV=1 Back     alignment and function desciption
 Score =  460 bits (1183), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/354 (62%), Positives = 267/354 (75%), Gaps = 11/354 (3%)

Query: 450  FTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLL 509
            +  IKE+H R + L++ A+E+FL NG+  L AF+N+  R+     + T NLPN +    +
Sbjct: 3056 YEEIKEVHRRWWQLRDNAVEIFLTNGRTLLLAFDNNKVRDDVYQSILTNNLPNLLEYGNI 3115

Query: 510  SDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRN 569
            +    LW  G +TN+ YL  LNK AGRS+NDLMQYPV PFILSDY S TLDL DP  +RN
Sbjct: 3116 TALTNLWYSGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILSDYVSETLDLNDPSIYRN 3175

Query: 570  LKKPMAVQDKKNESHYVNNYNYL-------AREMCDAVGGVNQEPYHYGSHYSNSGTVLH 622
            L KP+AVQ K+ E  YV+ Y YL       ARE  D +  V  +PYHYGSHYSNSGTVLH
Sbjct: 3176 LSKPIAVQYKEKEDRYVDTYKYLEEEYRKGARED-DPMPPV--QPYHYGSHYSNSGTVLH 3232

Query: 623  FLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILV 682
            FLVR+PPFT MFL YQD +FD+PDRTFH+  TTWRL+S ES TDVKELIPE FYL + LV
Sbjct: 3233 FLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLV 3292

Query: 683  NNEGFDFGVRQNGQRVDSVILPPWAP-DPRTFIMVHRQSLESELVSENLPHWIDLVFGYK 741
            N EGFDFGVRQNG+RV+ V LPPWA  DPR FI++HRQ+LES+ VS+N+ HWIDLVFGYK
Sbjct: 3293 NREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDHVSQNICHWIDLVFGYK 3352

Query: 742  QSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAH 795
            Q GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYGQTPRQLF +AH
Sbjct: 3353 QKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFHTAH 3406
May be required for sorting endosomal resident proteins into late multivesicular endosomes by a mechanism involving microtubules.
Mus musculus (taxid: 10090)
>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus GN=LYST PE=1 SV=1 Back     alignment and function description
>sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3 Back     alignment and function description
>sp|Q86JF2|LVSB_DICDI BEACH domain-containing protein lvsB OS=Dictyostelium discoideum GN=lvsB PE=4 SV=1 Back     alignment and function description
>sp|Q6VNB8|WDFY3_MOUSE WD repeat and FYVE domain-containing protein 3 OS=Mus musculus GN=Wdfy3 PE=1 SV=1 Back     alignment and function description
>sp|Q8IZQ1|WDFY3_HUMAN WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens GN=WDFY3 PE=1 SV=2 Back     alignment and function description
>sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2 Back     alignment and function description
>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZS81|WDFY4_HUMAN WD repeat- and FYVE domain-containing protein 4 OS=Homo sapiens GN=WDFY4 PE=1 SV=3 Back     alignment and function description
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query803
383865882 3448 PREDICTED: lysosomal-trafficking regulat 0.460 0.107 0.622 1e-147
350403013 3438 PREDICTED: lysosomal-trafficking regulat 0.460 0.107 0.630 1e-147
328790033 3399 PREDICTED: lysosomal-trafficking regulat 0.460 0.108 0.627 1e-147
307201173 3496 Lysosomal-trafficking regulator [Harpegn 0.440 0.101 0.652 1e-147
332030959 3486 Lysosomal-trafficking regulator [Acromyr 0.439 0.101 0.645 1e-146
322788736 3442 hypothetical protein SINV_80262 [Solenop 0.434 0.101 0.659 1e-146
307175931 3422 Lysosomal-trafficking regulator [Campono 0.442 0.103 0.650 1e-146
242014404 2983 lysosomal trafficking regulator, putativ 0.430 0.115 0.662 1e-145
345480622 3378 PREDICTED: lysosomal-trafficking regulat 0.440 0.104 0.647 1e-145
328701859 3383 PREDICTED: lysosomal-trafficking regulat 0.433 0.102 0.589 1e-130
>gi|383865882|ref|XP_003708401.1| PREDICTED: lysosomal-trafficking regulator-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 239/384 (62%), Positives = 298/384 (77%), Gaps = 14/384 (3%)

Query: 433  PDTEGIVYRTD------DIISVQFT-----NIKEIHNRRYNLQEKAIELFLINGKNYLFA 481
            PD   +  +TD      D+  V  T     +I+E+H RRY LQE+AIE+FLI G+ YL A
Sbjct: 2710 PDNPDVPLQTDIALGGLDLAMVGGTAWHLEDIRELHRRRYQLQERAIEIFLITGRTYLLA 2769

Query: 482  FENHNDREHFLNELSTCNLPNRMSSDLLSDTIQLWREGHLTNWAYLMILNKMAGRSYNDL 541
            F +  +R+ F+ ELS CNLP R+  D L++ I LWR G LTNW Y+  LNK+AGRSYNDL
Sbjct: 2770 FNSSKERDEFVTELSACNLPRRVPGDDLNEAITLWRSGALTNWEYITCLNKLAGRSYNDL 2829

Query: 542  MQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVG 601
            MQYPV PF+L+DY S  +DL +PK +RN K+PMAVQDKKNE HY+NNYNYL + + + + 
Sbjct: 2830 MQYPVFPFVLADYTSENIDLNNPKIYRNFKRPMAVQDKKNEQHYINNYNYLKQALSEGLN 2889

Query: 602  --GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLT 659
               +NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFL YQD+NFD+PDRTFH LATTWRLT
Sbjct: 2890 LIALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFLCYQDDNFDIPDRTFHALATTWRLT 2949

Query: 660  SSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPW-APDPRTFIMVHR 718
            S +STTDVKELIPE FYL + L+N+EGF+FG+RQNG RV  V LP W   D R FI+ HR
Sbjct: 2950 SCDSTTDVKELIPEFFYLPEFLLNSEGFNFGIRQNGNRVGDVELPKWCGGDARLFILAHR 3009

Query: 719  QSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWET 778
             +LE+++V E LP+WIDLVFG++Q+G+ AV+AINVFHPATYYGF++  I DPLER AWET
Sbjct: 3010 AALEADVVREVLPYWIDLVFGFRQTGRPAVEAINVFHPATYYGFNVEQIADPLERQAWET 3069

Query: 779  MIRTYGQTPRQLFKSAHPMNVKKL 802
            M+RTYGQTP QLF++AHP+ ++ L
Sbjct: 3070 MVRTYGQTPAQLFRAAHPLPIQNL 3093

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350403013|ref|XP_003486675.1| PREDICTED: lysosomal-trafficking regulator-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328790033|ref|XP_392306.3| PREDICTED: lysosomal-trafficking regulator-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307201173|gb|EFN81079.1| Lysosomal-trafficking regulator [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332030959|gb|EGI70585.1| Lysosomal-trafficking regulator [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322788736|gb|EFZ14329.1| hypothetical protein SINV_80262 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307175931|gb|EFN65741.1| Lysosomal-trafficking regulator [Camponotus floridanus] Back     alignment and taxonomy information
>gi|242014404|ref|XP_002427881.1| lysosomal trafficking regulator, putative [Pediculus humanus corporis] gi|212512350|gb|EEB15143.1| lysosomal trafficking regulator, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|345480622|ref|XP_001604427.2| PREDICTED: lysosomal-trafficking regulator-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328701859|ref|XP_001949243.2| PREDICTED: lysosomal-trafficking regulator-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query803
UNIPROTKB|F1RGY4 3799 F1RGY4 "Uncharacterized protei 0.430 0.091 0.612 1.4e-142
UNIPROTKB|F1MLZ4 3796 LYST "Lysosomal-trafficking re 0.430 0.091 0.612 4.4e-140
UNIPROTKB|Q9TTK4 3796 LYST "Lysosomal-trafficking re 0.430 0.091 0.612 4.4e-140
RGD|621837 3788 Lyst "lysosomal trafficking re 0.430 0.091 0.615 1.9e-139
MGI|MGI:107448 3788 Lyst "lysosomal trafficking re 0.430 0.091 0.615 6.3e-139
UNIPROTKB|Q99698 3801 LYST "Lysosomal-trafficking re 0.430 0.091 0.606 2.2e-138
FB|FBgn0262110 2517 CG42863 [Drosophila melanogast 0.429 0.137 0.556 1e-124
UNIPROTKB|F1NP17 2709 F1NP17 "Uncharacterized protei 0.425 0.126 0.475 1.2e-102
DICTYBASE|DDB_G0271504 4118 lvsB "BEACH domain-containing 0.511 0.099 0.452 1.1e-96
ZFIN|ZDB-GENE-070705-153 3522 si:ch211-259k10.1 "si:ch211-25 0.432 0.098 0.460 2.8e-88
UNIPROTKB|F1RGY4 F1RGY4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 1146 (408.5 bits), Expect = 1.4e-142, Sum P(3) = 1.4e-142
 Identities = 215/351 (61%), Positives = 264/351 (75%)

Query:   450 FTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSSDLL 509
             +  IKE+H R + L++ A+E+FL NG+  L AF+N   R+   + + T NLPN +    +
Sbjct:  3067 YEEIKEVHKRWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHSILTNNLPNLLEYGNI 3126

Query:   510 SDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRN 569
             +    LW  G +TN+ YL  LNK AGRS+NDLMQYPV PFIL+DY S TLDL+DP  +RN
Sbjct:  3127 TALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRN 3186

Query:   570 LKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQ----EPYHYGSHYSNSGTVLHFLV 625
             L KP+AVQ K+ E  YV+ Y YL  E        +     +PYHYGSHYSNSGTVLHFLV
Sbjct:  3187 LSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLV 3246

Query:   626 RIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNE 685
             R+PPFT MFL YQD +FD+PDRTFH+  TTWRL+S ES TDVKELIPE FYL + LVN E
Sbjct:  3247 RMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNRE 3306

Query:   686 GFDFGVRQNGQRVDSVILPPWAP-DPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSG 744
             GFDFGVRQNG+RV+ V LPPWA  DPR FI++HRQ+LES+ VS+N+  WIDLVFGYKQ G
Sbjct:  3307 GFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDLVFGYKQKG 3366

Query:   745 KAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAH 795
             KA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYGQTPRQLF+SAH
Sbjct:  3367 KASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFQSAH 3417
GO:0055091 "phospholipid homeostasis" evidence=IEA
GO:0051607 "defense response to virus" evidence=IEA
GO:0042832 "defense response to protozoan" evidence=IEA
GO:0042742 "defense response to bacterium" evidence=IEA
GO:0042493 "response to drug" evidence=IEA
GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IEA
GO:0033364 "mast cell secretory granule organization" evidence=IEA
GO:0033299 "secretion of lysosomal enzymes" evidence=IEA
GO:0032816 "positive regulation of natural killer cell activation" evidence=IEA
GO:0032510 "endosome to lysosome transport via multivesicular body sorting pathway" evidence=IEA
GO:0032438 "melanosome organization" evidence=IEA
GO:0030595 "leukocyte chemotaxis" evidence=IEA
GO:0015630 "microtubule cytoskeleton" evidence=IEA
GO:0007596 "blood coagulation" evidence=IEA
GO:0007040 "lysosome organization" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0006644 "phospholipid metabolic process" evidence=IEA
GO:0005829 "cytosol" evidence=IEA
GO:0002456 "T cell mediated immunity" evidence=IEA
GO:0002446 "neutrophil mediated immunity" evidence=IEA
UNIPROTKB|F1MLZ4 LYST "Lysosomal-trafficking regulator" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TTK4 LYST "Lysosomal-trafficking regulator" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621837 Lyst "lysosomal trafficking regulator" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107448 Lyst "lysosomal trafficking regulator" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q99698 LYST "Lysosomal-trafficking regulator" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0262110 CG42863 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NP17 F1NP17 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271504 lvsB "BEACH domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-153 si:ch211-259k10.1 "si:ch211-259k10.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9TTK4LYST_BOVINNo assigned EC number0.61860.42710.0903yesN/A
P97412LYST_MOUSENo assigned EC number0.62140.42710.0905yesN/A
Q99698LYST_HUMANNo assigned EC number0.61290.42710.0902yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query803
smart01026280 smart01026, Beach, Beige/BEACH domain 1e-152
pfam02138274 pfam02138, Beach, Beige/BEACH domain 1e-126
cd06071275 cd06071, Beach, BEACH (Beige and Chediak-Higashi) 1e-119
cd01201113 cd01201, PH_BEACH, Pleckstrin homology domain in B 1e-16
>gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain Back     alignment and domain information 
 Score =  446 bits (1149), Expect = e-152
 Identities = 155/285 (54%), Positives = 199/285 (69%), Gaps = 10/285 (3%)

Query: 514 QLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKP 573
           Q W+ G ++N+ YLM LN +AGRSYNDL QYPV P++L+DY S TLDL++P +FR+L KP
Sbjct: 2   QKWQNGEISNFEYLMHLNTLAGRSYNDLTQYPVFPWVLADYTSETLDLSNPSTFRDLSKP 61

Query: 574 MAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSM 633
           +   + +    +   Y     E+ D        P+HYG+HYS++G VL++L+R+ PFT++
Sbjct: 62  IGALNPERLEFFYERYE----ELEDPD----IPPFHYGTHYSSAGIVLYYLIRLEPFTTL 113

Query: 634 FLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQ 693
           FL  Q   FD  DR FH++A TWR  S ES TDVKELIPE FYL + LVN  GFDFG RQ
Sbjct: 114 FLQLQGGRFDHADRLFHSVAATWRSASLESMTDVKELIPEFFYLPEFLVNINGFDFGTRQ 173

Query: 694 NGQRVDSVILPPWAP-DPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAIN 752
           +G+ VD V LPPWA   P  FI  HR++LESE VS++L HWIDL+FGYKQ GK AV+A+N
Sbjct: 174 DGEDVDDVELPPWAKGSPEEFIRKHREALESEYVSQHLHHWIDLIFGYKQRGKEAVEALN 233

Query: 753 VFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHP 796
           VFHP TY G  D+ +I DP+ER A E  I  +GQTP+QLFK  HP
Sbjct: 234 VFHPLTYEGAVDLDSIEDPVERKALEGQIHNFGQTPKQLFKEPHP 278

The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Length = 280
>gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain Back     alignment and domain information
>gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes Back     alignment and domain information
>gnl|CDD|241237 cd01201, PH_BEACH, Pleckstrin homology domain in BEACH domain containing proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 803
cd06071275 Beach BEACH (Beige and Chediak-Higashi) domains, i 100.0
PF02138270 Beach: Beige/BEACH domain; InterPro: IPR000409 The 100.0
KOG1787|consensus 1126 100.0
KOG1786|consensus 1081 100.0
KOG1786|consensus1081 100.0
PF14844106 PH_BEACH: PH domain associated with Beige/BEACH; P 99.72
cd01201108 Neurobeachin Neurobeachin Pleckstrin homology-like 99.63
KOG1787|consensus1126 99.61
KOG1788|consensus2799 99.29
PF06469169 DUF1088: Domain of Unknown Function (DUF1088); Int 98.34
PF1447096 bPH_3: Bacterial PH domain 88.03
smart0056861 GRAM domain in glucosyltransferases, myotubularins 86.26
PF0289369 GRAM: GRAM domain; InterPro: IPR004182 The GRAM do 85.11
>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes Back     alignment and domain information 
Probab=100.00  E-value=1.4e-104  Score=838.76  Aligned_cols=274  Identities=50%  Similarity=0.937  Sum_probs=260.2

Q ss_pred             HHhhhcCCCChHHHHHHHHhhcCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCCcccccCchhHHHHHHHHHHH
Q psy10776        513 IQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYL  592 (803)
Q Consensus       513 t~~W~~g~ISNFeYLm~LN~lAGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsKPiga~~~~r~~~~~~~y~~l  592 (803)
                      |++|++|+||||||||+||.+|||||||++||||||||++||+|++|||+|+.+||||||||||++++|++.+.++|+.+
T Consensus         1 T~~W~~g~iSNfeYL~~LN~~sGRSf~D~sqYPIfPWvi~dy~s~~ldl~~~~~~RDLskpigal~~~r~~~~~~~~~~~   80 (275)
T cd06071           1 TKKWQNGEISNFEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESD   80 (275)
T ss_pred             CchhhcCCccHHHHHHHHHHHhCCCCCCcccCCccCeeecCCCCcccccCCcccccCCCCchhhcCHHHHHHHHHHHhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             HHHhhhcCCCCCCCCcccCCCCCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHHHHHhhhccCCcCccccccc
Q psy10776        593 AREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIP  672 (803)
Q Consensus       593 ~~~~~~~~~~~~~~p~hygshYS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~~~w~~~s~~s~~DvkELIP  672 (803)
                      .        ....++||||+|||++++|++||+|++|||++|+.+|+|+||+|||+|+||.++|++++. .++|++||||
T Consensus        81 ~--------~~~~~~~~y~shyS~~~~V~~yLvR~ePft~~~~~lq~g~fd~~~RlF~si~~~~~~~~~-~~~d~~ELIP  151 (275)
T cd06071          81 S--------DDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWRSASE-NPSDVKELIP  151 (275)
T ss_pred             c--------ccCCCCCCCCCCCCCHHHHHHHHhHcCCccHHHHHHhcCCcCCcccchhhHHHHHHHHHc-cCCCcccCCc
Confidence            3        235789999999999999999999999999999999999999999999999999998764 4899999999


Q ss_pred             cccccccccccCCCCCcccccCCCccCceecCCCCCChHHHHHHHHHHhhhhhhhcccchhhHhHhcccccchhHhhccC
Q psy10776        673 ELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAIN  752 (803)
Q Consensus       673 EFF~~PEfl~N~n~~~fG~~q~g~~v~DV~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~N  752 (803)
                      ||||+||||+|.|+++||+ |+|+.|+||+||+||++|.+||++||+||||+|||++||+||||||||||+|++|++|.|
T Consensus       152 EFf~~Pe~f~N~n~~~lg~-~~g~~~~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~N  230 (275)
T cd06071         152 EFYYLPEFFLNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKN  230 (275)
T ss_pred             hHhcCHHHHhCCCcccccc-cCCCcccceecCCCcCCHHHHHHHHHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcC
Confidence            9999999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccc-ccCCCCCHHHHHHHHHHhHhcCCcccccccCCCCcc
Q psy10776        753 VFHPATYYGF-DIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMN  798 (803)
Q Consensus       753 vF~p~tY~~~-d~~~i~D~~~r~a~e~~i~~fGQ~P~QLF~~pHP~r  798 (803)
                      ||||++|++. +.+..+  .++.++++++.+|||||.|||++|||+|
T Consensus       231 vf~p~~Y~~~~~~~~~~--~~~~~~~~~~~~~Gq~P~QLF~~pHP~R  275 (275)
T cd06071         231 VFHPLTYEGSVDLDSID--VEREAIEAQINNFGQTPVQLFTKPHPKR  275 (275)
T ss_pred             CCcccccCCccccchhh--HHHHHHHHHHHhcCCCcchhccCCCCCC
Confidence            9999999984 333322  7789999999999999999999999997

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.
>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling Back     alignment and domain information
>KOG1787|consensus Back     alignment and domain information
>KOG1786|consensus Back     alignment and domain information
>KOG1786|consensus Back     alignment and domain information
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C Back     alignment and domain information
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain Back     alignment and domain information
>KOG1787|consensus Back     alignment and domain information
>KOG1788|consensus Back     alignment and domain information
>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query803
1mi1_A414 Crystal Structure Of The Ph-Beach Domain Of Human N 7e-77
1t77_A414 Crystal Structure Of The Ph-Beach Domains Of Human 2e-73
>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414 Back     alignment and structure 
Iteration: 1

 Score =  285 bits (729), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 153/362 (42%), Positives = 211/362 (58%), Gaps = 24/362 (6%)
Query: 450 FTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNEL------STCNLPNR 503
           F+ I+ + +RRY LQ  A+E+F  N  +  F F +    +  +  L      ++  LP  
Sbjct: 60  FSEIRAVFSRRYLLQNTALEVFXANRTSVXFNFPDQATVKKVVYSLPRVGVGTSYGLPQA 119
Query: 504 MSSDLL--------SDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYK 555
               L         S+  Q W+   ++N+ YL  LN +AGR+YNDL QYPV P++L++Y+
Sbjct: 120 RRISLATPRQLYKSSNXTQRWQRREISNFEYLXFLNTIAGRTYNDLNQYPVFPWVLTNYE 179
Query: 556 SATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYS 615
           S  LDLT P +FR+L KP+   + K    Y   Y     +           PYHY +HYS
Sbjct: 180 SEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQS--------PPYHYNTHYS 231
Query: 616 NSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELF 675
            + + L +LVRI PFT+ FLN  D  FD PDRTF ++A +WR TS   T+DVKELIPE +
Sbjct: 232 TATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSWR-TSQRDTSDVKELIPEFY 290
Query: 676 YLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWID 735
           YL +  VN+ G++ GVR++   V+ V LPPWA  P  F+ ++R +LESE VS  L  WID
Sbjct: 291 YLPEXFVNSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRXALESEFVSCQLHQWID 350
Query: 736 LVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQTPRQLFKSA 794
           L+FGYKQ G  AV A+NVFH  TY G  ++ +I DP+ R A E  I+ +GQTP QL    
Sbjct: 351 LIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAXEAQIQNFGQTPSQLLIEP 410
Query: 795 HP 796
           HP
Sbjct: 411 HP 412
>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query803
1t77_A414 Lipopolysaccharide-responsive and beige-like ancho 1e-121
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Length = 414 Back     alignment and structure
 Score =  371 bits (954), Expect = e-121
 Identities = 146/365 (40%), Positives = 204/365 (55%), Gaps = 24/365 (6%)

Query: 447 SVQFTNIKEIHNRRYNLQEKAIELFLINGKNYLFAFENHNDREHFLNELSTCNLPNRMSS 506
              FT I+ I +RRY LQ  A+E+F+ N    +F F +    +  +N L    +      
Sbjct: 57  KWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGL 116

Query: 507 DL--------------LSDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILS 552
                            S+  Q W+   ++N+ YLM LN +AGRSYNDL QYPV P++++
Sbjct: 117 PQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVIT 176

Query: 553 DYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGS 612
           +Y+S  LDLT P +FR+L KP+   + K  + +   Y                  +HYG+
Sbjct: 177 NYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWE--------DDQVPKFHYGT 228

Query: 613 HYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIP 672
           HYS +  VL +L+RI PFT+ FLN Q   FD  DRTF +++  WR  S   T+D+KELIP
Sbjct: 229 HYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRDTSDIKELIP 287

Query: 673 ELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPH 732
           E +YL ++ VN   ++ GV  +G  V  V LPPWA     F+ ++R +LESE VS  L  
Sbjct: 288 EFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQ 347

Query: 733 WIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQTPRQLF 791
           WIDL+FGYKQ G  AV A+NVF+  TY G  ++ +I DP+ R A E  IR++GQTP QL 
Sbjct: 348 WIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLL 407

Query: 792 KSAHP 796
              HP
Sbjct: 408 IEPHP 412
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query803
1t77_A414 Lipopolysaccharide-responsive and beige-like ancho 100.0
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Back     alignment and structure
Probab=100.00  E-value=8.8e-127  Score=1049.41  Aligned_cols=398  Identities=41%  Similarity=0.729  Sum_probs=358.5

Q ss_pred             ceeEEEeEEEeeccceeeeEEEeecceEEEeeCCCCcccccccccccccchhhhhccCCCCCCCCCCCcccccccccccc
Q psy10776        308 SVTYMCCTHLITPSKQIQGELLITSAGLKFIPFNESHNFVTNAVTEEFSEHEQVMSEGKNSEEPNETGAETKRIHNAIDE  387 (803)
Q Consensus       308 kI~~s~~C~lVtpl~~~~G~LlIg~~~LyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  387 (803)
                      .|.+++.|.+|+|+.+.+|+|.||+.++||..+...+.+         ..                           .+ 
T Consensus         2 ~v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~---------~~---------------------------~~-   44 (414)
T 1t77_A            2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNF---------KK---------------------------ID-   44 (414)
T ss_dssp             CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHH---------HH---------------------------SC-
T ss_pred             CEEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccc---------cc---------------------------cc-
Confidence            588999999999999999999999999999876522111         00                           00 


Q ss_pred             cccccCCCchhhhHHhhhhhhhhhhhhhHHhhccccccccccCCCCCCCCeeeecCccccccccCeeeEecccccCcccE
Q psy10776        388 VDISNDVNSDQKIEVRENLSENAAQNTKVEKLNKKTTTKTKKNVSPDTEGIVYRTDDIISVQFTNIKEIHNRRYNLQEKA  467 (803)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~w~~~~~~~I~~~~I~~I~~Rr~~l~~~a  467 (803)
                                                .++..             ...+.+..|.+++        |++|++|||+|+++|
T Consensus        45 --------------------------~~~~~-------------~~~~~~~~~~~~~--------I~~i~~Rryll~~~a   77 (414)
T 1t77_A           45 --------------------------PKILA-------------YTEGLHGKWLFTE--------IRSIFSRRYLLQNTA   77 (414)
T ss_dssp             --------------------------HHHHH-------------HCCCTTCEEEGGG--------EEEEEEEEETTEEEE
T ss_pred             --------------------------cchhc-------------cccCcceEecchh--------eeeeeeeeccCccee
Confidence                                      00000             0134567899999        999999999999999


Q ss_pred             EEEEEeCCcEEEEEeCCcchHHHHHHHhhhC------CCCCC--C---cccc---HHHHHHhhhcCCCChHHHHHHHHhh
Q psy10776        468 IELFLINGKNYLFAFENHNDREHFLNELSTC------NLPNR--M---SSDL---LSDTIQLWREGHLTNWAYLMILNKM  533 (803)
Q Consensus       468 iEIf~~~g~s~~l~F~~~~~r~~~~~~l~~~------~~p~~--~---~~~~---~~~~t~~W~~g~ISNFeYLm~LN~l  533 (803)
                      ||||+.+|+++||+|.+++.++++++.+...      .+|+.  +   ....   ..++|++|++|+||||||||+||++
T Consensus        78 lEif~~~g~s~~l~F~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~W~~g~iSNFeYLm~LN~~  157 (414)
T 1t77_A           78 LEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTI  157 (414)
T ss_dssp             EEEEETTSCEEEEECSSHHHHHHHHHHSCSCTTCSTTSCCCCTTTTTCCHHHHHHHCSHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             EEEEEcCCcEEEEEcCCHHHHHHHHHhccccccccccCCccccccccCCHHHHhhhhhHHHHHhcCCccHHHHHHHHHHH
Confidence            9999999999999999988888998887532      22321  1   1111   2369999999999999999999999


Q ss_pred             cCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCCcccccCchhHHHHHHHHHHHHHHhhhcCCCCCCCCcccCCC
Q psy10776        534 AGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSH  613 (803)
Q Consensus       534 AGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsKPiga~~~~r~~~~~~~y~~l~~~~~~~~~~~~~~p~hygsh  613 (803)
                      |||||||++||||||||++||+|++|||+||++||||||||||||++|++.|.+||++++        +...+|||||||
T Consensus       158 aGRs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~~~~--------~~~~~~f~ygsh  229 (414)
T 1t77_A          158 AGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWE--------DDQVPKFHYGTH  229 (414)
T ss_dssp             HTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHHHCC--------CSSSCCCSBSSC
T ss_pred             cCCCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHHhhc--------ccCCCCcccCCC
Confidence            999999999999999999999999999999999999999999999999999999998753        235789999999


Q ss_pred             CCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHHHHHhhhccCCcCccccccccccccccccccCCCCCccccc
Q psy10776        614 YSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQ  693 (803)
Q Consensus       614 YS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~~~w~~~s~~s~~DvkELIPEFF~~PEfl~N~n~~~fG~~q  693 (803)
                      ||++++|++||+|++|||++++.+|+|+||+|||+|+||+++|+++. .+++|||||||||||+||||+|.|+|+||++|
T Consensus       230 yS~~~~V~~yL~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~-~~~~d~kElIPEFf~~Pe~l~N~n~~~lG~~~  308 (414)
T 1t77_A          230 YSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQ-RDTSDIKELIPEFYYLPEMFVNFNNYNLGVMD  308 (414)
T ss_dssp             SCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHH-HCTTCCCCBCGGGGTCGGGGSCTTCCCCCBCT
T ss_pred             CCCHHHHHHHHhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHh-ccCCCccccCchhhcChHhhccccCCcccccc
Confidence            99999999999999999999999999999999999999999999874 67899999999999999999999999999999


Q ss_pred             CCCccCceecCCCCCChHHHHHHHHHHhhhhhhhcccchhhHhHhcccccchhHhhccCCCCCccccc-cccCCCCCHHH
Q psy10776        694 NGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLE  772 (803)
Q Consensus       694 ~g~~v~DV~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~WIDLIFGyKQ~G~~Av~a~NvF~p~tY~~-~d~~~i~D~~~  772 (803)
                      +|+.|+||+|||||+||++||++||+||||+|||+|||+||||||||||+|++|++|.|||||+||+| +|++.++||.+
T Consensus       309 ~g~~v~DV~LP~Wa~sp~~FI~~~R~aLES~~VS~~Lh~WIDLiFGykq~G~~Av~a~Nvf~~ltY~~~vd~~~i~d~~~  388 (414)
T 1t77_A          309 DGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVL  388 (414)
T ss_dssp             TSCBCSSCBCCTTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHH
T ss_pred             CCCCCCceeCCCCCCCHHHHHHHHHHHHcChHhhhhhhhhhhhhcCcccCCHHHHhcCCccccceecCcccccccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 89999999999


Q ss_pred             HHHHHHHhHhcCCcccccccCCCCcc
Q psy10776        773 RTAWETMIRTYGQTPRQLFKSAHPMN  798 (803)
Q Consensus       773 r~a~e~~i~~fGQ~P~QLF~~pHP~r  798 (803)
                      |.|+++||++|||||.|||++|||+|
T Consensus       389 ~~a~~~~i~~fGQ~P~QLF~~pHP~R  414 (414)
T 1t77_A          389 REAVEAQIRSFGQTPSQLLIEPHPPR  414 (414)
T ss_dssp             HHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred             HHHHHHHHHHcCCChhhhhcCCCCCC
Confidence            99999999999999999999999998

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 803
d1t77a1304 a.169.1.1 (A:2186-2489) Lipopolysaccharide-respons 1e-113
d1t77a2110 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsi 5e-12
>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  345 bits (886), Expect = e-113
 Identities = 129/288 (44%), Positives = 178/288 (61%), Gaps = 10/288 (3%)

Query: 510 SDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRN 569
           S+  Q W+   ++N+ YLM LN +AGRSYNDL QYPV P+++++Y+S  LDLT P +FR+
Sbjct: 24  SNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRD 83

Query: 570 LKKPMAVQDKKNESHYVNNYNYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPP 629
           L KP+   + K  + +   Y     +            +HYG+HYS +  VL +L+RI P
Sbjct: 84  LSKPIGALNPKRAAFFAERYESWEDD--------QVPKFHYGTHYSTASFVLAWLLRIEP 135

Query: 630 FTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDF 689
           FT+ FLN Q   FD  DRTF +++  WR  S   T+D+KELIPE +YL ++ VN   ++ 
Sbjct: 136 FTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRDTSDIKELIPEFYYLPEMFVNFNNYNL 194

Query: 690 GVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVD 749
           GV  +G  V  V LPPWA     F+ ++R +LESE VS  L  WIDL+FGYKQ G  AV 
Sbjct: 195 GVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR 254

Query: 750 AINVFHPATYYGF-DIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHP 796
           A+NVF+  TY G  ++ +I DP+ R A E  IR++GQTP QL    HP
Sbjct: 255 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHP 302
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query803
d1t77a1304 Lipopolysaccharide-responsive and beige-like ancho 100.0
d1t77a2110 Lipopolysaccharide-responsive and beige-like ancho 99.7
d1zsqa1125 Myotubularin-related protein 2, N-terminal domain 93.31
>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-104  Score=844.55  Aligned_cols=280  Identities=46%  Similarity=0.860  Sum_probs=270.2

Q ss_pred             HHHHHhhhcCCCChHHHHHHHHhhcCCCCCCCCCCcccceeecCCCCCCCCCCCCccccCCCCcccccCchhHHHHHHHH
Q psy10776        510 SDTIQLWREGHLTNWAYLMILNKMAGRSYNDLMQYPVLPFILSDYKSATLDLTDPKSFRNLKKPMAVQDKKNESHYVNNY  589 (803)
Q Consensus       510 ~~~t~~W~~g~ISNFeYLm~LN~lAGRSfnDl~qYPVFPWVl~Dy~S~~lDL~~~~~fRDLsKPiga~~~~r~~~~~~~y  589 (803)
                      .++|++|++|+||||||||+||.+|||||||++||||||||++||+|+++||+|+++||||+|||||++++|++.++++|
T Consensus        24 ~~~t~kW~~g~iSNfeYLm~LN~~sGRSf~D~~qYPIfPWVi~dy~s~~ldl~~~~~~RDLskpig~l~~~r~~~~~~~~  103 (304)
T d1t77a1          24 SNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERY  103 (304)
T ss_dssp             CSHHHHHHTTSSCHHHHHHHHHHHHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCCcHHHHHHHHHHHhCCCCCCcccCcccCeeeccCCcccccccCccccccCCCchhccCHHHHHHHHHHH
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCcccCCCCCChhhHHhhhcccCCcchhhhhhcCCCCCCCCCcccCHHHHHhhhccCCcCcccc
Q psy10776        590 NYLAREMCDAVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKE  669 (803)
Q Consensus       590 ~~l~~~~~~~~~~~~~~p~hygshYS~~~~Vl~yLvRlePFt~~~l~lQ~g~FD~~dR~F~SI~~~w~~~s~~s~~DvkE  669 (803)
                      +++.        ....++||||+|||++++|++||+|++|||++++.+|+|+||+|||+|+||+++|+++. .+++|++|
T Consensus       104 ~~~~--------~~~~~~~~y~s~yS~~~~V~~~L~R~ePft~l~~~lq~g~fD~~~R~F~si~~~~~~~~-~~~~d~~E  174 (304)
T d1t77a1         104 ESWE--------DDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQ-RDTSDIKE  174 (304)
T ss_dssp             HHCC--------CSSSCCCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHH-HCTTCCCC
T ss_pred             Hhcc--------cCCCCCcccCCCCCChhHHHHHHhcCCchhHHHHHhhcCcccCCccccccHHHHHHHhc-ccccchhh
Confidence            7642        23578999999999999999999999999999999999999999999999999999865 56899999


Q ss_pred             ccccccccccccccCCCCCcccccCCCccCceecCCCCCChHHHHHHHHHHhhhhhhhcccchhhHhHhcccccchhHhh
Q psy10776        670 LIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAPDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVD  749 (803)
Q Consensus       670 LIPEFF~~PEfl~N~n~~~fG~~q~g~~v~DV~LP~Wa~sp~~FI~~hR~ALES~~VS~~Lh~WIDLIFGyKQ~G~~Av~  749 (803)
                      |||||||+||||+|.|+++||++++|+.|+||+||+||++|++||++||+||||+|||++||+||||||||||+|++|++
T Consensus       175 liPEFf~~Pe~f~n~n~~~~g~~~~g~~v~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLiFG~kq~G~~A~~  254 (304)
T d1t77a1         175 LIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVR  254 (304)
T ss_dssp             BCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCCTTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHH
T ss_pred             cCchhhcChHhhhhccccccccccCCCcccccccCCccCCcHHHHHHHHHHHhchHHHhHhhhhHHhhhccccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccc-cccCCCCCHHHHHHHHHHhHhcCCcccccccCCCCcc
Q psy10776        750 AINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMN  798 (803)
Q Consensus       750 a~NvF~p~tY~~-~d~~~i~D~~~r~a~e~~i~~fGQ~P~QLF~~pHP~r  798 (803)
                      |.|||||++|++ ++.+.+.|+.++.++++++++|||+|.|||++|||+|
T Consensus       255 a~Nvf~p~~Y~~~~~~~~~~d~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R  304 (304)
T d1t77a1         255 ALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR  304 (304)
T ss_dssp             HTCCBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred             hccccccccccccccccccCCHHHHHHHHHHHHHCCCCchhhcCCCCCCC
Confidence            999999999998 6888999999999999999999999999999999998
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure