Psyllid ID: psy10810

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780------
MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYGCPVYNSASSRKESFPIAPQTWDFSSDNEERYNKPFTMWELESVLKLLKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIMVKTTPKEPWLLKPPICDLSLSSYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINNDVTHHELSLDEIKTIIKKKYLEEWNTTWLPKDRLMNYPMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRPPSFSTSNVSHILKDDEETLKEVFQFLKRNNFLKN
cccccccccccccccccHHHHHHHHHcHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccHHHHHHcccccccEEEEEccccccHHHHHHHccccccccccccHHHEEcccccccHHHHHHHHHHccccccccccHHHHHHHEEEEEccccccEEEcccccccccccHHHHHHHHHHHHcccccccccEEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccEEEEccEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccEEEEEEccccEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccccccccccHHcccccHHHHHHHHHHHHHHccccc
ccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHcccccccccHHHHHHHHHHHHHHHHHccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccEEccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEccccEEEEEEEccccccccccEEEEccEEccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccccHHccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEccccEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHccccccccHcccccccccEEEEEccHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHccccc
MVNILQWNVNgvknhlndltiklrdinpkiiciqeshlkeeenftlkgfntvGTYEVILRQLHKwnmrghlpiflskymdprsfkirlnnsilsenfsivcgipqggvvsgTLFAIAINSITsyihpslssslfvddfaiftrDKNKEVLVSIMQESIDTlsedfsivcgipqggvvsgTLFAIAINSITsyihpslssslfvddfaiftrDKNKEVLVSIMQESIDKLenfsndtglffspqksqcVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSkldygcpvynsassrkesfpiapqtwdfssdneerynkpftMWELESVLKLLksqsspgpdeiHNQMLRHLPSNIRRKILSSNYIAktlsienhpnimrtlnPLYVRKyensnmkptigiqkknletiipfnnimvkttpkepwllkppicdlslssykkenvpaqMFQNEFKNKLAENFQSHIKIytdgskneqgvgcaltipekniakrfglnknaSIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNmfhenplvKRVQEELssiepsieflwcpshvgiagneAADEEAKQAINndvthhelsLDEIKTIIKKKYLEewnttwlpkdrlmnypmspwnkmkrngpneftlqlrpqtneVCLMRMrvghsklthshlfrredqpicdqcqepmtiEHILISCrkmrfrppsfstsnvshilkDDEETLKEVFQFLKRNNFLKN
MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTsinlnmydtRIEVVDTFKFLGLTFDKKMTWKVHLKnlkqsclsrsrILKIlskkawaadRKMLIRIYKSLIRSKLDYGCPVYNsassrkesfpiapqtwdfssdNEERYNKPFTMWELESVLKLLKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKtlsienhpnimRTLNPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIMVKTTPKEPWLLKPPICDLSLSSYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINndvthhelsldEIKTIIKKKYLeewnttwlpkdrLMNYPMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRPPsfstsnvshilkdDEETLKEVFQflkrnnflkn
MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYGCPVYNSASSRKESFPIAPQTWDFSSDNEERYNKPFTMWELESVLKLLKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIMVKTTPKEPWLLKPPICDLSLSSYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINNDVTHHELSLDEIKTIIKKKYLEEWNTTWLPKDRLMNYPMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRPPSFSTSNVSHILKDDEETLKEVFQFLKRNNFLKN
**NILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYGCPVYN***************W*********YNKPFTMWELESVLKL*********************SNIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIMVKTTPKEPWLLKPPICDLSLSSYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNE********AINNDVTHHELSLDEIKTIIKKKYLEEWNTTWLPKDRLMNYPMSPWN*********FTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMRFR**********HIL*****TLKEVFQFLK*******
MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYGCPVYNSASSRKESFPIAPQTWDFSSDNEERYNKPFTMWELESVLKLLKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIMVKTTPKEPWLLKPPICDLSLSS****NVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAIT*M*HE*PLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAIN**VTHHELSLDEIKTIIKKKYLEEWNTTWLPKDRLMNYPMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRP********SHILKDDEETLKEVFQFLKRNNFL**
MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYGCPVYNSASSRKESFPIAPQTWDFSSDNEERYNKPFTMWELESVLKLLKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIMVKTTPKEPWLLKPPICDLSLSSYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINNDVTHHELSLDEIKTIIKKKYLEEWNTTWLPKDRLMNYPMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRPPSFSTSNVSHILKDDEETLKEVFQFLKRNNFLKN
MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYGCPVYNSASSRKESFPIAPQTWDFSSDNEERYNKPFTMWELESVLKLLKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIMVKTTPKEPWLLKPPICDLSLSSYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINNDVTHHELSLDEIKTIIKKKYLEEWNTTWLPKDR*M**PMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRPPSFSTSNVSHILKDDEETLKEVFQFLKRNNFLKN
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVNILQWNVNGVKNHLNDLTIKLRDINPKIICIQESHLKEEENFTLKGFNTVGTYEVILRQLHKWNMRGHLPIFLSKYMDPRSFKIRLNNSILSENFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYGCPVYNSASSRKESFPIAPQTWDFSSDNEERYNKPFTMWELESVLKLLKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIMVKTTPKEPWLLKPPICDLSLSSYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINNDVTHHELSLDEIKTIIKKKYLEEWNTTWLPKDRLMNYPMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFRREDQPICDQCQEPMTIEHILISCRKMRFRPPSFSTSNVSHILKDDEETLKEVFQFLKRNNFLKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query786 2.2.26 [Sep-21-2011]
P21328916 RNA-directed DNA polymera yes N/A 0.216 0.185 0.240 3e-10
Q03270410 Retrovirus-related Pol po yes N/A 0.189 0.363 0.238 2e-08
P21329916 RNA-directed DNA polymera N/A N/A 0.217 0.186 0.242 7e-08
P11204 1146 Pol polyprotein OS=Equine yes N/A 0.157 0.108 0.306 9e-08
P32542 1146 Pol polyprotein OS=Equine yes N/A 0.157 0.108 0.306 9e-08
P03371 1145 Pol polyprotein OS=Equine yes N/A 0.157 0.108 0.312 1e-07
Q03271383 Retrovirus-related Pol po yes N/A 0.178 0.365 0.223 8e-07
Q77373 1435 Gag-Pol polyprotein OS=Hu yes N/A 0.136 0.074 0.344 4e-05
P164251021 Putative 115 kDa protein yes N/A 0.215 0.165 0.191 7e-05
P19560 1475 Gag-Pol polyprotein OS=Bo yes N/A 0.217 0.115 0.287 0.0002
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster GN=pol PE=1 SV=1 Back     alignment and function desciption
 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 94/191 (49%), Gaps = 21/191 (10%)

Query: 167 IVCGIPQGGVVSGTLFAIAINS------ITSYIHPSLSSSLFVDDFAIFTRDKNKEVLVS 220
           I  G+PQG V+  TL+++  +       +T      +  + + DD A+ T+ K+     S
Sbjct: 638 IAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAATS 697

Query: 221 IMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFKFLG 280
            +QE +D  + ++ +  +  + +K   V F+ +     +   +++    I     +K+LG
Sbjct: 698 GLQEYLDAFQQWAENWNVRINAEKCANVTFANR---TGSCPGVSLNGRLIRHHQAYKYLG 754

Query: 281 LTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAW-AADRKML-----IRIYKSLIRSKL 334
           +T D+K+T+  H+ N++Q+  ++      +++ +W  A R  L     + IYKS++   L
Sbjct: 755 ITLDRKLTFSRHITNIQQAFRTK------VARMSWLIAPRNKLSLGCKVNIYKSILAPCL 808

Query: 335 DYGCPVYNSAS 345
            YG  VY  A+
Sbjct: 809 FYGLQVYGIAA 819

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 4EC: 9
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1 Back     alignment and function description
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris GN=jockey\pol PE=1 SV=1 Back     alignment and function description
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369) GN=pol PE=1 SV=1 Back     alignment and function description
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22) GN=pol PE=1 SV=1 Back     alignment and function description
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming) GN=pol PE=3 SV=1 Back     alignment and function description
>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1 Back     alignment and function description
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O (isolate ANT70) GN=gag-pol PE=3 SV=3 Back     alignment and function description
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM OS=Drosophila melanogaster PE=4 SV=1 Back     alignment and function description
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29) GN=gag-pol PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query786
125901787 1222 pol-like protein [Biomphalaria glabrata] 0.741 0.477 0.342 3e-82
427791807 1212 Putative tick transposon, partial [Rhipi 0.732 0.475 0.319 1e-66
427791321 1210 Putative tick transposon, partial [Rhipi 0.745 0.484 0.304 2e-63
427798889 1199 Putative tick transposon, partial [Rhipi 0.774 0.507 0.299 2e-62
427798887 1199 Putative tick transposon, partial [Rhipi 0.772 0.506 0.289 3e-60
427791063 1035 Putative tick transposon, partial [Rhipi 0.702 0.533 0.291 5e-59
427798885 1199 Putative tick transposon, partial [Rhipi 0.764 0.501 0.278 1e-58
427792011 1121 Putative tick transposon, partial [Rhipi 0.594 0.416 0.295 2e-47
11323019 1227 pol [Drosophila melanogaster] 0.695 0.445 0.280 2e-41
357621647 1133 putative pol-like protein [Danaus plexip 0.688 0.477 0.263 3e-37
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata] Back     alignment and taxonomy information
 Score =  313 bits (802), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 219/639 (34%), Positives = 323/639 (50%), Gaps = 56/639 (8%)

Query: 134  FVDDFAIFTRDKNKEVLVSIMQESIDTLSEDFSIVCGIPQGGVVSGTLFAIAINSITSYI 193
            FV++F      K+++  V +   + DT  ++     G+PQG ++S TLF I INSI + +
Sbjct: 603  FVEEFL-----KDRKFQVRVGNSASDTHDQEM----GVPQGSILSVTLFNIKINSIINAL 653

Query: 194  HPSLSSSLFVDDFAIFTRDKNKEVLVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRK 253
             P +  SL+VDDF I T  KN   L   +Q  ++K++ ++N  G  FS  K+  + F   
Sbjct: 654  SPGIECSLYVDDFVILTYGKNMNTLERKLQLCLNKIQGWANYNGFKFSDSKTVSMHFC-N 712

Query: 254  YKQLNTSINLNMYDTRIEVVDTFKFLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKK 313
             + L+    L ++  +I VV T KFLGLT D K  +  H+K LK+ C     IL++LS  
Sbjct: 713  LRGLHPDPELFIHKKKIPVVKTTKFLGLTLDSKFNFLPHIKELKKKCQKSLNILRVLSHT 772

Query: 314  AWAADRKMLIRIYKSLIRSKLDYGCPVYNSASSRKESFPIAPQTWDFSSDNEERYNKPFT 373
             W ADR  L+ +Y+SLIRSKLDYG  +Y +A  RK    I                +P  
Sbjct: 773  DWGADRDTLLLLYRSLIRSKLDYGSIIYGAA--RKSYLKIL---------------EPIQ 815

Query: 374  MWELESVLKLLKSQSSPGPDEIHNQMLRHLPSNIRRKILSSNYIAKTLSIENHPNIMRTL 433
               L   L   +  +SP P  +H +    LP +IR K L+  YI K  S   +P      
Sbjct: 816  NAALRLCLGAFR--TSPIP-SLHVEA-GELPMDIRMKKLAMQYIVKLKSNPTNPAFDSIF 871

Query: 434  NPLYVRKYENSNMKPTIGIQKKNLETIIPFNNIM--------VKTTPKEPWLLKPPICDL 485
            NP  V  Y   N +P + IQ   L    P  N+         ++T    PWL+  P  +L
Sbjct: 872  NPTEVELY---NRRPNV-IQPLGLRMREPIQNLTQPIDQISKIETPQNPPWLMNKPKLNL 927

Query: 486  SLSSYKKENVPAQMFQNEFKNKLAENFQSHIKIYTDGSKNEQGVGCALTIPEKNIAKRFG 545
            SL ++KKEN    + Q  F+ +L E++     IYTDGSK E  V CA +   K I++R  
Sbjct: 928  SLLNFKKENTDPSILQVHFR-ELQESYGDCGTIYTDGSKMEGKVACACSFRNKTISRR-- 984

Query: 546  LNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNMFHENPLVKRVQEEL 605
            L    SIF AEL A+L +L+ +K     K +I +DS S LQA+  M  + PLV +  + L
Sbjct: 985  LPDGCSIFTAELHAILLALMAVKASERSKFIICSDSKSALQALGRMKTDIPLVHKSLKLL 1044

Query: 606  SSIEP---SIEFLWCPSHVGIAGNEAADEEAKQAINNDVTHHELSLDEIKTIIKKKYLEE 662
              I      + F+W PSHVGI GNEAAD EAK+A+N+ V+  ++   +++  I      E
Sbjct: 1045 DLITADRRDVTFIWVPSHVGIEGNEAADREAKRALNHAVSGTQIPYSDLRQSIASATYRE 1104

Query: 663  WNTTWLPKDRLMNYPMSPWNKMKRNGPNEFTLQLRPQTNEVCLMRMRVGHSKLTHSHLFR 722
            W   W   +   +  +       R  P    L  R  T    + R+R+GH+ +THS + +
Sbjct: 1105 WQNRW---EAETHSKLRQIVADVRWRPTSKGLTRRGSTT---MSRLRIGHTYITHSFVLK 1158

Query: 723  REDQPICDQCQEPMTIEHILISC-RKMRFRPPSFSTSNV 760
            RE+ P+C+ C   +T+EHIL+ C R    R   F  +N+
Sbjct: 1159 REEPPLCEYCDSRLTVEHILVDCPRYQDVRAKHFRATNL 1197

Source: Biomphalaria glabrata

Species: Biomphalaria glabrata

Genus: Biomphalaria

Family: Planorbidae

Order:

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota
>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427792011|gb|JAA61457.1| Putative tick transposon, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|11323019|emb|CAC16871.1| pol [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|357621647|gb|EHJ73416.1| putative pol-like protein [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query786
FB|FBgn0045761888 CHKov1 "CHKov1" [Drosophila me 0.231 0.204 0.255 1e-12
ASPGD|ASPL0000075333486 AN10625 [Emericella nidulans ( 0.287 0.465 0.261 6.9e-11
ASPGD|ASPL0000033911686 AN2796 [Emericella nidulans (t 0.212 0.243 0.254 8.4e-07
ASPGD|ASPL00000775471581 AN8648 [Emericella nidulans (t 0.220 0.109 0.270 6e-06
TIGR_CMR|CJE_1808146 CJE_1808 "RNase H" [Campylobac 0.151 0.815 0.325 9.1e-06
ASPGD|ASPL00000556521054 AN0368 [Emericella nidulans (t 0.220 0.164 0.270 1.3e-05
ASPGD|ASPL00000402261538 AN2661 [Emericella nidulans (t 0.212 0.108 0.254 3.8e-05
FB|FBgn0045761 CHKov1 "CHKov1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 156 (60.0 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 48/188 (25%), Positives = 88/188 (46%)

Query:   159 DT-LSEDFSIVCGIPQGGVVSGTLFAIAINSITSYIHPSLSSSLFVDDFAIFTRDKNKEV 217
             DT  S D +I  G+PQG V+   L+ +        I  +L++S F DD AI +R K    
Sbjct:   623 DTSTSRDCAIEAGVPQGSVLGPILYTLYTADFP--IDYNLTTSTFADDTAILSRSKCPIK 680

Query:   218 LVSIMQESIDKLENFSNDTGLFFSPQKSQCVLFSRKYKQLNTSINLNMYDTRIEVVDTFK 277
               +++   +  +E +  D  +  + QK + V F+   KQ    + LN  +  I   D   
Sbjct:   681 ATALLSRHLTSVERWLADWRISINVQKCKQVTFTLN-KQTCPPLVLN--NICIPQADEVT 737

Query:   278 FLGLTFDKKMTWKVHLKNLKQSCLSRSRILKILSKKAWAADRKMLIRIYKSLIRSKLDYG 337
             +LG+  D+++TW+ H++   +    ++R L  L         +    +Y S+++    YG
Sbjct:   738 YLGVHLDRRLTWRKHIEAKSKHLKLKARNLHWLINARSPLSLEFKALLYNSVLKPIWTYG 797

Query:   338 CPVYNSAS 345
               ++ +AS
Sbjct:   798 SELWGNAS 805
GO:0006278 "RNA-dependent DNA replication" evidence=IEA
GO:0003964 "RNA-directed DNA polymerase activity" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
ASPGD|ASPL0000075333 AN10625 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000033911 AN2796 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000077547 AN8648 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1808 CJE_1808 "RNase H" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
ASPGD|ASPL0000055652 AN0368 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040226 AN2661 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.260.691
3rd Layer3.1.26.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
cd09276128 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom 2e-31
pfam00075126 pfam00075, RNase_H, RNase H 8e-19
cd01650220 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long term 5e-17
COG0328154 COG0328, RnhA, Ribonuclease HI [DNA replication, r 8e-15
cd06222123 cd06222, RNase_H, RNase H is an endonuclease that 3e-11
cd09278139 cd09278, RNase_HI_prokaryote_like, RNase HI family 2e-10
pfam00078194 pfam00078, RVT_1, Reverse transcriptase (RNA-depen 3e-08
cd09273135 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase 5e-06
cd09280150 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase 6e-06
pfam1345688 pfam13456, RVT_3, Reverse transcriptase-like 7e-05
pfam00078194 pfam00078, RVT_1, Reverse transcriptase (RNA-depen 1e-04
PRK00203150 PRK00203, rnhA, ribonuclease H; Reviewed 1e-04
cd09279128 cd09279, RNase_HI_archaeal_like, RNAse HI family t 3e-04
cd09086254 cd09086, ExoIII-like_AP-endo, Escherichia coli exo 5e-04
cd09277133 cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI 0.002
cd09087253 cd09087, Ape1-like_AP-endo, Human Ape1-like subfam 0.002
cd09077205 cd09077, R1-I-EN, Endonuclease domain encoded by v 0.003
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases Back     alignment and domain information 
 Score =  118 bits (299), Expect = 2e-31
 Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 6/125 (4%)

Query: 518 IYTDGSKNEQGVGCALTIPEKNIAKR-FGLNKNASIFHAELFALLQSLLTIKELG--ACK 574
           IYTDGSK E   G    I  K    R + L    S+F AEL A+L++L      G  A K
Sbjct: 2   IYTDGSKLEGRTGAGFAIVRKGTISRSYKLGPYCSVFDAELLAILEALQLALREGRRARK 61

Query: 575 ALIITDSLSCLQAITNMFHENPLVKRVQ---EELSSIEPSIEFLWCPSHVGIAGNEAADE 631
             I +DS + L+A+ +    +PLV R++    EL++    +   W P H GI GNE AD 
Sbjct: 62  ITIFSDSQAALKALRSPRSSSPLVLRIRKAIRELANHGVKVRLHWVPGHSGIEGNERADR 121

Query: 632 EAKQA 636
            AK+A
Sbjct: 122 LAKEA 126

Ribonuclease H (RNase H) is classified into two families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). Ribonuclease HI (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as an adjunct domain to the reverse transcriptase gene in retroviruses, long-term repeat (LTR)-bearing retrotransposons and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD), are unvaried across all RNase H domains. The position of the RNase domain of non-LTR and LTR transposons is at the carboxyl terminal of the reverse transcriptase (RT) domain and their RNase domains group together, indicating a common evolutionary origin. Many non-LTR transposons have lost the RNase domain because their activity is at the nucleus and cellular RNase may suffice; however LTR retotransposons always encode their own RNase domain because it requires RNase activity in RNA-protein particles in the cytoplasm. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 128
>gnl|CDD|215695 pfam00075, RNase_H, RNase H Back     alignment and domain information
>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information
>gnl|CDD|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner Back     alignment and domain information
>gnl|CDD|187702 cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes Back     alignment and domain information
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) Back     alignment and domain information
>gnl|CDD|187697 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase HI in long-term repeat retroelements Back     alignment and domain information
>gnl|CDD|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and more complex than their prokaryotic counterparts and unlike prokaryote, RNase H are essential in higher eukaryote Back     alignment and domain information
>gnl|CDD|205634 pfam13456, RVT_3, Reverse transcriptase-like Back     alignment and domain information
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) Back     alignment and domain information
>gnl|CDD|178927 PRK00203, rnhA, ribonuclease H; Reviewed Back     alignment and domain information
>gnl|CDD|187703 cd09279, RNase_HI_archaeal_like, RNAse HI family that includes Archaeal RNase HI Back     alignment and domain information
>gnl|CDD|197320 cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|187701 cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI containing a hybrid binding domain (HBD) at the N-terminus Back     alignment and domain information
>gnl|CDD|197321 cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|197311 cd09077, R1-I-EN, Endonuclease domain encoded by various R1- and I-clade non-long terminal repeat retrotransposons Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 786
COG0328154 RnhA Ribonuclease HI [DNA replication, recombinati 99.86
PRK06548161 ribonuclease H; Provisional 99.84
PRK00203150 rnhA ribonuclease H; Reviewed 99.82
PRK08719147 ribonuclease H; Reviewed 99.82
cd01651226 RT_G2_intron RT_G2_intron: Reverse transcriptases 99.82
cd03487214 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr 99.82
cd01650220 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea 99.8
PF00078214 RVT_1: Reverse transcriptase (RNA-dependent DNA po 99.8
PF00075132 RNase_H: RNase H; InterPro: IPR002156 The RNase H 99.79
cd01646158 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip 99.68
cd01709346 RT_like_1 RT_like_1: A subfamily of reverse transc 99.67
KOG3752|consensus371 99.66
cd06222130 RnaseH RNase H (RNase HI) is an endonuclease that 99.63
PRK13907128 rnhA ribonuclease H; Provisional 99.59
KOG4768|consensus796 99.59
cd01648119 TERT TERT: Telomerase reverse transcriptase (TERT) 99.53
PRK07708219 hypothetical protein; Validated 99.52
PRK07238372 bifunctional RNase H/acid phosphatase; Provisional 99.26
cd0030498 RT_like RT_like: Reverse transcriptase (RT, RNA-de 99.17
PF1345687 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH 98.94
KOG1005|consensus888 98.79
cd03714119 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) oc 98.5
cd01645213 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from r 98.37
cd01648119 TERT TERT: Telomerase reverse transcriptase (TERT) 98.15
cd03715210 RT_ZFREV_like RT_ZFREV_like: A subfamily of revers 97.96
cd03487214 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr 97.45
cd01709346 RT_like_1 RT_like_1: A subfamily of reverse transc 97.08
cd01647177 RT_LTR RT_LTR: Reverse transcriptases (RTs) from r 97.01
cd01651226 RT_G2_intron RT_G2_intron: Reverse transcriptases 97.0
COG3344328 Retron-type reverse transcriptase [DNA replication 96.8
cd01646158 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip 96.77
cd0030498 RT_like RT_like: Reverse transcriptase (RT, RNA-de 95.99
PF00078214 RVT_1: Reverse transcriptase (RNA-dependent DNA po 95.9
cd01699278 RNA_dep_RNAP RNA_dep_RNAP: RNA-dependent RNA polym 95.62
PF1396686 zf-RVT: zinc-binding in reverse transcriptase 94.41
cd01650220 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea 94.26
cd01644213 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) i 93.55
KOG4768|consensus796 88.65
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=99.86  E-value=2.4e-21  Score=180.28  Aligned_cols=125  Identities=28%  Similarity=0.371  Sum_probs=103.2

Q ss_pred             cEEEEecCCC-C-CCCeeEEEEeCCC-cceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhcc
Q psy10810        515 HIKIYTDGSK-N-EQGVGCALTIPEK-NIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITNM  591 (786)
Q Consensus       515 ~~~iytDGS~-~-~~~~G~a~~~~~~-~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~~  591 (786)
                      .+.||||||+ + +|..|+|+++..+ ......+....+||++||++|++.||+++.+.+.+.|.|+|||++++++|..|
T Consensus         3 ~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~~w   82 (154)
T COG0328           3 KVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEGRTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGITRW   82 (154)
T ss_pred             ceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeeecccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHH
Confidence            5789999999 3 4457888887533 33323333338999999999999999999988899999999999999999975


Q ss_pred             CCC----------------cHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHhcCC
Q psy10810        592 FHE----------------NPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAINND  640 (786)
Q Consensus       592 ~~~----------------~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~~~~  640 (786)
                      ..+                .++|+++.+++.++ ..|.+.|||||+|.++||.||+||+.|++..
T Consensus        83 ~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~-~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~  146 (154)
T COG0328          83 IVKWKKNGWKTADKKPVKNKDLWEELDELLKRH-ELVFWEWVKGHAGHPENERADQLAREAARAA  146 (154)
T ss_pred             HhhccccCccccccCccccHHHHHHHHHHHhhC-CeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence            322                25799988888764 4899999999999999999999999998765

>PRK06548 ribonuclease H; Provisional Back     alignment and domain information
>PRK00203 rnhA ribonuclease H; Reviewed Back     alignment and domain information
>PRK08719 ribonuclease H; Reviewed Back     alignment and domain information
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin Back     alignment and domain information
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons Back     alignment and domain information
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site Back     alignment and domain information
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs) Back     alignment and domain information
>KOG3752|consensus Back     alignment and domain information
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner Back     alignment and domain information
>PRK13907 rnhA ribonuclease H; Provisional Back     alignment and domain information
>KOG4768|consensus Back     alignment and domain information
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT) Back     alignment and domain information
>PRK07708 hypothetical protein; Validated Back     alignment and domain information
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional Back     alignment and domain information
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family Back     alignment and domain information
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B Back     alignment and domain information
>KOG1005|consensus Back     alignment and domain information
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons Back     alignment and domain information
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs) Back     alignment and domain information
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT) Back     alignment and domain information
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT Back     alignment and domain information
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs) Back     alignment and domain information
>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template Back     alignment and domain information
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin Back     alignment and domain information
>COG3344 Retron-type reverse transcriptase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family Back     alignment and domain information
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons Back     alignment and domain information
>cd01699 RNA_dep_RNAP RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage Back     alignment and domain information
>PF13966 zf-RVT: zinc-binding in reverse transcriptase Back     alignment and domain information
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons Back     alignment and domain information
>KOG4768|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
2kq2_A147 Ribonuclease H-related protein; PSI, NESG, protein 3e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 1e-12
3qio_A150 GAG-POL polyprotein; RNAse H, inhibitor, nuclease, 1e-08
2qkb_A154 Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy 5e-08
3hst_B141 Protein RV2228C/MT2287; ribonuclease H1, RV2228C N 5e-07
2ehg_A149 Ribonuclease HI; RNAse HI, hyperthermophilic archa 2e-06
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 9e-06
3u3g_D140 Ribonuclease H, RNAse H1; hydrolase, cleave the RN 6e-05
3kyl_A596 Telomerase reverse transcriptase; reverse transcri 3e-04
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 3e-04
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 5e-04
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 6e-04
2zd1_A557 Reverse transcriptase/ribonuclease H; P51/P66, het 8e-04
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 9e-04
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Length = 147 Back     alignment and structure
 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 18/145 (12%)

Query: 513 QSHIKIYTDGS--KNEQGVGCALTIPEKNIAKRFGL-----NKNASIFHAELFALLQSLL 565
           ++   +YTDGS    +     A     K   +   +              E+ A L ++ 
Sbjct: 4   RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVK 63

Query: 566 TIKELGACKALIITDSLSCLQAITNMFHE-----NPLVKRVQEELSSIEPSIEFLWCPSH 620
              +LG  K  I+ D       I           N   +   + ++       F    +H
Sbjct: 64  KASQLG-VKIRILHDY----AGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAH 118

Query: 621 VGIAGNEAADEEAKQAIN-NDVTHH 644
            G   N+  D +AK A+   D+ HH
Sbjct: 119 SGNEFNDYVDMKAKSALGIRDLEHH 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A Length = 165 Back     alignment and structure
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A Length = 150 Back     alignment and structure
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* Length = 154 Back     alignment and structure
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} Length = 141 Back     alignment and structure
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A Length = 149 Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Length = 245 Back     alignment and structure
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism} Length = 140 Back     alignment and structure
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A Length = 596 Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268 Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Length = 240 Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238 Back     alignment and structure
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... Length = 557 Back     alignment and structure
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Length = 555 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query786
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 99.87
2qkb_A154 Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy 99.87
2zd1_A557 Reverse transcriptase/ribonuclease H; P51/P66, het 99.87
3qio_A150 GAG-POL polyprotein; RNAse H, inhibitor, nuclease, 99.85
3h08_A146 RNH (ribonuclease H); RNAse H, 3D-structure, endon 99.85
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 99.84
1jl1_A155 Ribonuclease HI; RNAse HI, protein stability, ther 99.84
2kq2_A147 Ribonuclease H-related protein; PSI, NESG, protein 99.84
2e4l_A158 Ribonuclease HI, RNAse HI; hydrolase, endoribonucl 99.83
1ril_A166 Ribonuclease H; hydrolase(endoribonuclease); 2.80A 99.81
2lsn_A165 Reverse transcriptase; RNAse H, viral protein; NMR 99.81
3u3g_D140 Ribonuclease H, RNAse H1; hydrolase, cleave the RN 99.69
2ehg_A149 Ribonuclease HI; RNAse HI, hyperthermophilic archa 99.68
3hst_B141 Protein RV2228C/MT2287; ribonuclease H1, RV2228C N 99.68
3kyl_A596 Telomerase reverse transcriptase; reverse transcri 99.64
1zbf_A142 Ribonuclease H-related protein; RNAse H, RNA/DNA h 99.23
4htu_A134 Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, 99.08
3fsi_A255 RT, reverse transcriptase domain; transferase/DNA 98.17
1rw3_A455 POL polyprotein; RNA and DNA dependent DNA polymer 97.57
2zd1_B428 P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleosid 97.41
3kyl_A596 Telomerase reverse transcriptase; reverse transcri 96.89
1xr5_A466 Genome polyprotein; RNA-dependent RNA polymerase, 95.81
1ra6_A461 P3D, genome polyprotein; nucleotidyltransferase, R 95.11
3uqs_A515 RNA-dependent RNA polymerase; transferase; 2.00A { 89.41
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Back     alignment and structure
Probab=99.87  E-value=7.3e-22  Score=227.94  Aligned_cols=118  Identities=26%  Similarity=0.320  Sum_probs=96.7

Q ss_pred             CCcEEEEecCCCC-CC-CeeEEEEeCCCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhc
Q psy10810        513 QSHIKIYTDGSKN-EQ-GVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITN  590 (786)
Q Consensus       513 ~~~~~iytDGS~~-~~-~~G~a~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~  590 (786)
                      ++.+.+|||||+. ++ ..|+|+++..+... . +....+||+.||+.|++.||+.    ..+++.|+|||++|++++++
T Consensus       434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~-~~~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~  507 (555)
T 1mu2_A          434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-V-KKLEQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS  507 (555)
T ss_dssp             TTCEEEEEEEEECTTTCCEEEEEEETTSCEE-E-EEESSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred             CCceEEEEcccccCCCCCceEEEEEEeCCEe-e-ccCCCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence            5679999999983 33 37888887544322 1 2234689999999999999998    47899999999999999999


Q ss_pred             cCC--CcHHHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHh
Q psy10810        591 MFH--ENPLVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAI  637 (786)
Q Consensus       591 ~~~--~~~~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~  637 (786)
                      |.+  +.++++++.+.+.+ +..|.+.|||||+|++|||.||+||++|+
T Consensus       508 ~~~~~~~~l~~~~~~~~~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~  555 (555)
T 1mu2_A          508 QPTESESKIVNQIIEEMIK-KEAIYVAWVPAHKGIGGNQEVDHLVSQGI  555 (555)
T ss_dssp             CCSEESCHHHHHHHHHHHH-CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcc-CCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence            764  45788888777665 47899999999999999999999999985
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* Back     alignment and structure
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... Back     alignment and structure
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A Back     alignment and structure
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum} Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A Back     alignment and structure
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ... Back     alignment and structure
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Back     alignment and structure
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A Back     alignment and structure
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A Back     alignment and structure
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus} Back     alignment and structure
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism} Back     alignment and structure
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A Back     alignment and structure
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A Back     alignment and structure
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* Back     alignment and structure
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A Back     alignment and structure
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ... Back     alignment and structure
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2 Back     alignment and structure
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ... Back     alignment and structure
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A Back     alignment and structure
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4 Back     alignment and structure
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent, polym terminus, transferase; 2.00A {Human poliovirus 1} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A 3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A 3cdu_A 3cdw_A Back     alignment and structure
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 786
d1mu2a1126 c.55.3.1 (A:430-555) HIV RNase H (Domain of revers 1e-11
d1rila_147 c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermoph 4e-10
d1s1ta1110 c.55.3.1 (A:430-539) HIV RNase H (Domain of revers 4e-08
d1jl1a_152 c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli 2e-06
d1wdua_228 d.151.1.1 (A:) Endonuclease domain of TRAS1 retrot 8e-05
d1akoa_268 d.151.1.1 (A:) DNA-repair enzyme exonuclease III { 1e-04
d1vyba_236 d.151.1.1 (A:) Endonuclease domain of LINE-1 rever 6e-04
d1hd7a_275 d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human 8e-04
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Length = 126 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

 Score = 60.3 bits (145), Expect = 1e-11
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 518 IYTDGS-KNEQGVGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKAL 576
            YTDGS   +   G A  + ++   K   L +  +   AEL A   +L         K  
Sbjct: 10  FYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTDSG----PKVN 64

Query: 577 IITDSLSCLQAITNMFHENPLVKRVQEELSSIEP-SIEFLWCPSHVGIAGNEAADEEAKQ 635
           II DS   +  + +   E+      Q     I+  +I   W P+H GI GN+  D    Q
Sbjct: 65  IIVDSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQ 124

Query: 636 AI 637
            I
Sbjct: 125 GI 126
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Length = 147 Back     information, alignment and structure
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Length = 110 Back     information, alignment and structure
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Length = 152 Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Length = 228 Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query786
d1mu2a1126 HIV RNase H (Domain of reverse transcriptase) {Hum 99.85
d1rila_147 RNase H (RNase HI) {Thermus thermophilus [TaxId: 2 99.84
d1jl1a_152 RNase H (RNase HI) {Escherichia coli [TaxId: 562]} 99.82
d1s1ta1110 HIV RNase H (Domain of reverse transcriptase) {Hum 99.67
d1zbfa1132 BH0863-like Ribonuclease H {Bacillus halodurans [T 99.43
d1ztwa1255 MMLV reverse transcriptase {Moloney murine leukemi 97.96
d1mu2a2427 HIV-1 reverse transcriptase {Human immunodeficienc 97.35
d2zd1b1424 HIV-1 reverse transcriptase {Human immunodeficienc 97.16
d1hara_216 HIV-1 reverse transcriptase {Human immunodeficienc 93.63
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=99.85  E-value=1.5e-21  Score=177.67  Aligned_cols=117  Identities=25%  Similarity=0.294  Sum_probs=90.3

Q ss_pred             CCcEEEEecCCC-CCCC-eeEEEEeCCCcceEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHHHhc
Q psy10810        513 QSHIKIYTDGSK-NEQG-VGCALTIPEKNIAKRFGLNKNASIFHAELFALLQSLLTIKELGACKALIITDSLSCLQAITN  590 (786)
Q Consensus       513 ~~~~~iytDGS~-~~~~-~G~a~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~i~I~sDs~~a~~~l~~  590 (786)
                      ++..++|||||+ .+++ .|+|+++..+.... ..+ ..+|+++||+.||++||+..    ..++.|+|||+++++.+.+
T Consensus         5 ~~~~t~YTDGS~~~n~~~~~~g~~~~~~~~~~-~~~-~~~tnn~AEl~Ai~~al~~~----~~~i~I~tDS~~v~~~~~~   78 (126)
T d1mu2a1           5 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKV-KKL-EQTTNQQAELEAFAMALTDS----GPKVNIIVDSQYVMGIVAS   78 (126)
T ss_dssp             TTCEEEEEEEEECTTTCCEEEEEEETTSCEEE-EEE-SSCCHHHHHHHHHHHHHHTS----CSEEEEEESCHHHHHHHHT
T ss_pred             CCCcEEEEcCCCCCCCCcEEEEEEecCCCEEE-Eec-CCCcchHHHHHHHHHHhccC----CcceEEEechHHHHHHHhc
Confidence            566899999997 3444 66777776554332 222 35799999999999999864    6899999999999999999


Q ss_pred             cCCCc--H-HHHHHHHHHhcCCCcEEEEEecCCCCCCcchHHhHHHHHHh
Q psy10810        591 MFHEN--P-LVKRVQEELSSIEPSIEFLWCPSHVGIAGNEAADEEAKQAI  637 (786)
Q Consensus       591 ~~~~~--~-~~~~i~~~~~~~~~~v~~~wvpgH~g~~~Ne~AD~lAk~a~  637 (786)
                      +...+  . +.+.+....+  ...|.|.|||||+|++|||+||+||++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~--~~~v~~~wV~gH~g~~gNe~AD~LA~~ai  126 (126)
T d1mu2a1          79 QPTESESKIVNQIIEEMIK--KEAIYVAWVPAHKGIGGNQEVDHLVSQGI  126 (126)
T ss_dssp             CCSEESCHHHHHHHHHHHH--CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             CCccccchHHHHHHHHhhh--cceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence            65433  3 4444444444  35899999999999999999999999984
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} Back     information, alignment and structure
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure