Psyllid ID: psy10850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MSKMVLKNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLSLV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHHccEEEEEEcHHHHHHHHcccccccccccccEEEEEcccccccccccccccccEEEEEEccccHHHHHHHHHHHHHcccccccccEEEEEEEEcccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccHHHEEEEEEEEEHHHHHHHHHHcccHHHcccccEEEEEEcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mskmvlknvefkesdlkrddisledlpltipphhhklqyqywfwysrrtpgkvtsvqSYDDNLKLIQKFGSVEQFWEIYThlvrpnefqsFIDLHLfkvgvkpmwedeanrngGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRfqedhisvwnktsslslv
Flexible Loop (DISEMBL)
mskmvlknvefkesdlkrddisledlpltipphhHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPmwedeanrnggkWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRfqedhisvwnktsslslv
Low Complexity Region (SEG)
MSKMVLKNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLSLV
Disordered region (IsUnstruct)
**********************LEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWN********
Disordered Region (DISOPRED)
***********************************KLQYQYWFWYSR***************LKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTS*****
Disordered Region (DISEMBL)
MSKMVLKNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLSLV
Disordered Region (DISPRO)
********************************HHHKLQYQYWFWYSRRTPG**TSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKMVLKNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q8BMB3	245	Eukaryotic translation in	yes	N/A	0.942	0.665	0.638	8e-60
O60573	245	Eukaryotic translation in	yes	N/A	0.942	0.665	0.631	2e-59
A3RCV9	232	Eukaryotic translation in	N/A	N/A	0.768	0.573	0.533	2e-40
Q10NQ9	227	Eukaryotic translation in	yes	N/A	0.768	0.585	0.518	3e-39
Q9FK59	221	Eukaryotic translation in	yes	N/A	0.924	0.723	0.475	4e-39
Q22888	212	Eukaryotic translation in	yes	N/A	0.838	0.683	0.506	3e-38
O81481	218	Eukaryotic translation in	N/A	N/A	0.884	0.701	0.358	9e-27
Q03389	209	Eukaryotic translation in	N/A	N/A	0.791	0.655	0.428	7e-25
O81482	216	Eukaryotic translation in	N/A	N/A	0.791	0.634	0.4	7e-25
O23252	235	Eukaryotic translation in	no	N/A	0.786	0.578	0.355	1e-23

>sp|Q8BMB3|IF4E2_MOUSE Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1

 Score =  229 bits (584), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 127/163 (77%)

Query: 7   KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
           K+ E +++D  +   S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct: 26  KDGEKEKTDRDKSQSSGKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 85

Query: 67  QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
             F SVEQFW+ Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct: 86  GTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 145

Query: 127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct: 146 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 188

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Mus musculus (taxid: 10090)

>sp|O60573|IF4E2_HUMAN Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 127/163 (77%)

Query: 7   KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
           K+ E ++++  ++  S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct: 26  KDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 85

Query: 67  QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
             F SVEQFW  Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct: 86  GTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 145

Query: 127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct: 146 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 188

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Homo sapiens (taxid: 9606)

>sp|A3RCV9|IF4E3_WHEAT Eukaryotic translation initiation factor NCBP OS=Triticum aestivum GN=NCBP PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 96/135 (71%), Gaps = 2/135 (1%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L+ +   WY+RRTPG  T  QSY+DN+K I  F +VE FW  Y HL RP+   S  DL
Sbjct: 54  HPLRRKLVLWYTRRTPG--TRSQSYEDNIKKIVDFSTVESFWVCYCHLARPSSLPSPTDL 111

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISV 154
           HLFK GV+P+WED ANRNGGKW+IR +K ++ R WE+L+L ++G+Q    D++CG V+S 
Sbjct: 112 HLFKEGVRPLWEDPANRNGGKWIIRFKKAVSGRFWEDLVLVLVGDQLDYSDDVCGIVLSC 171

Query: 155 RFQEDHISVWNKTSS 169
           RF ED +SVWN+ +S
Sbjct: 172 RFNEDILSVWNRNAS 186

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|Q10NQ9|IF4E3_ORYSJ Eukaryotic translation initiation factor NCBP OS=Oryza sativa subsp. japonica GN=NCBP PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 97/135 (71%), Gaps = 2/135 (1%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L+ ++  WY+RRTPG  +  QSY+DN+K I  F +VE FW  Y HL RP    S  DL
Sbjct: 49  HPLRRRFVLWYTRRTPGARS--QSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDL 106

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISV 154
           HLFK G++P+WED ANR+GGKW+IR +K ++ R WE+L+L ++G+Q    D++CG V+SV
Sbjct: 107 HLFKEGIRPLWEDPANRSGGKWIIRFKKTVSGRFWEDLVLVLVGDQLDYSDDVCGVVLSV 166

Query: 155 RFQEDHISVWNKTSS 169
           RF ED +SVWN+ +S
Sbjct: 167 RFNEDILSVWNRNAS 181

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FK59|IF4E5_ARATH Eukaryotic translation initiation factor NCBP OS=Arabidopsis thaliana GN=NCBP PE=2 SV=1

 Score =  160 bits (405), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 107/162 (66%), Gaps = 2/162 (1%)

Query: 8   NVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQ 67
           N++  +S    D +S E     +    H L+Y++  WY+RRTPG     QSY+DN+K + 
Sbjct: 16  NMDSIKSHYVTDSVSEERRSRELKDGDHPLRYKFSIWYTRRTPG--VRNQSYEDNIKKMV 73

Query: 68  KFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASR 127
           +F +VE FW  Y HL R +   S  DLH FK G++P+WED AN NGGKW+IR  K +++R
Sbjct: 74  EFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSAR 133

Query: 128 CWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
            WE+L+LA++G+Q    D ICGAV+SVRF ED ISVWN+ +S
Sbjct: 134 FWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNAS 175

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Arabidopsis thaliana (taxid: 3702)

>sp|Q22888|IF4E4_CAEEL Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1

 Score =  157 bits (398), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 99/148 (66%), Gaps = 3/148 (2%)

Query: 21  ISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYT 80
           I +ED P  +    H+LQY Y F Y  R  GK    + Y   ++ +    SVEQFW I  
Sbjct: 19  ILMEDAP--VGSDDHQLQYSYTFSYFMRPTGKFDP-EDYASYVQPVGIMKSVEQFWSIMV 75

Query: 81  HLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQ 140
           H  RP E     D+H FK GVKP+WED AN  GGKW+IRL+KG+++R WENL++A++GEQ
Sbjct: 76  HFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLLMAIIGEQ 135

Query: 141 FMVGDEICGAVISVRFQEDHISVWNKTS 168
           F+VGDE+CGAV S+R QED IS+WN+ +
Sbjct: 136 FLVGDELCGAVCSIRNQEDIISLWNRNA 163

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. All 5 eIF4E proteins bind monomethyl cap structures. Only ife-1, ife-2 and ife-5 bind trimethyl cap structures which result from trans-splicing. Translation of trimethyl cap structure mRNAs may be regulated by intracellular redox state; disulfide bonds change the width and depth of the cap-binding cavity determining selectivity to mRNA caps.

Caenorhabditis elegans (taxid: 6239)

>sp|O81481|IF4E1_MAIZE Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1

 Score =  119 bits (298), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 3/156 (1%)

Query: 15  DLKRDDISLEDLPLTI-PPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVE 73
           D  R++  + DL     PP  H L++ + FW+    P   +   ++  +++ I  F +VE
Sbjct: 22  DDDREEGEITDLACAPSPPATHPLEHSWTFWFD--NPQSKSKQAAWGSSIRPIHTFSTVE 79

Query: 74  QFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLI 133
           +FW +Y ++  P++     D H FK  ++P WED    NGGKW I   +G +   W + +
Sbjct: 80  EFWGLYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTL 139

Query: 134 LAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           LAM+GEQF  GDEICGAV+SVR +++ I++W K ++
Sbjct: 140 LAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAA 175

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|Q03389|IF4E2_WHEAT Eukaryotic translation initiation factor isoform 4E-2 OS=Triticum aestivum PE=1 SV=1

 Score =  113 bits (282), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 3/140 (2%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           HKLQ Q+ FWY  +T  K  +  ++  +LK    F +VE+FW +Y  + RP++     D 
Sbjct: 33  HKLQRQWTFWYDIQTKPKPGA--AWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADF 90

Query: 95  HLFKVGVKPMWEDEANRNGGKW-LIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVIS 153
           HLFK GV+P WED    NGGKW +I  RK      W    +A++GEQF    EICG V S
Sbjct: 91  HLFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVAS 150

Query: 154 VRFQEDHISVWNKTSSLSLV 173
           VR ++D +S+W KT+S   V
Sbjct: 151 VRQRQDKLSLWTKTASNEAV 170

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|O81482|IF4E2_MAIZE Eukaryotic translation initiation factor isoform 4E-2 OS=Zea mays PE=2 SV=1

 Score =  113 bits (282), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 3/140 (2%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           HKL  Q+ FWY  +T  K  S  ++  +LK    F +VE+FW +Y  + RP++     D 
Sbjct: 40  HKLHRQWTFWYDIQT--KTKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADF 97

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRL-RKGIASRCWENLILAMLGEQFMVGDEICGAVIS 153
           HLFK GV+P WED    NGGKW +   RK      W   ++A++GEQF   ++ICG V S
Sbjct: 98  HLFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLMALIGEQFDETEDICGIVAS 157

Query: 154 VRFQEDHISVWNKTSSLSLV 173
           VR + D +++W +T+S   V
Sbjct: 158 VRARGDKLALWTRTASNEAV 177

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|O23252|IF4E1_ARATH Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=1 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 82/138 (59%), Gaps = 2/138 (1%)

Query: 32  PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSF 91
           P  H L++ + FW+    P   +   S+  +L+ +  F +VE+FW +Y ++  P++    
Sbjct: 57  PESHPLEHSWTFWFDN--PAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHG 114

Query: 92  IDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAV 151
            D + FK  ++P WED    NGGKW +   K  + + W   +LA++GEQF  GDEICGAV
Sbjct: 115 ADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFDHGDEICGAV 174

Query: 152 ISVRFQEDHISVWNKTSS 169
           +++R +++ IS+W K +S
Sbjct: 175 VNIRGKQERISIWTKNAS 192

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
242022061	213	eukaryotic translation initiation factor	0.826	0.671	0.720	1e-61
350417115	219	PREDICTED: eukaryotic translation initia	0.924	0.730	0.662	3e-61
328777580	219	PREDICTED: eukaryotic translation initia	0.826	0.652	0.720	6e-61
322778708	218	hypothetical protein SINV_00066 [Solenop	0.826	0.655	0.720	1e-60
193662114	216	PREDICTED: eukaryotic translation initia	0.959	0.768	0.652	1e-60
383850464	220	PREDICTED: eukaryotic translation initia	0.976	0.768	0.630	2e-60
340713186	219	PREDICTED: eukaryotic translation initia	0.924	0.730	0.650	5e-60
327281584	256	PREDICTED: eukaryotic translation initia	0.942	0.636	0.631	5e-59
148708234	391	eukaryotic translation initiation factor	0.942	0.416	0.638	5e-59
148708232	262	eukaryotic translation initiation factor	0.942	0.622	0.638	8e-59

>gi|242022061|ref|XP_002431460.1| eukaryotic translation initiation factor 4E type, putative [Pediculus humanus corporis] gi|212516748|gb|EEB18722.1| eukaryotic translation initiation factor 4E type, putative [Pediculus humanus corporis]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 124/143 (86%)

Query: 27  PLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPN 86
           P+ +PP  HKLQ  YW W+SRRTPGK +S+QSYD NLKLI K GSVEQFW  Y+HL+RP+
Sbjct: 29  PVVVPPGEHKLQCAYWLWFSRRTPGKTSSIQSYDQNLKLIAKIGSVEQFWAHYSHLIRPS 88

Query: 87  EFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDE 146
           + Q   D HLFKVG+KPMWEDEAN++GGKW++RLRKG+ASRCWENL+LAMLGEQFMVG E
Sbjct: 89  DLQGHSDFHLFKVGIKPMWEDEANQHGGKWIVRLRKGLASRCWENLVLAMLGEQFMVGKE 148

Query: 147 ICGAVISVRFQEDHISVWNKTSS 169
           ICGAV+S+R+QED ISVWN+T+S
Sbjct: 149 ICGAVVSIRYQEDIISVWNRTAS 171

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417115|ref|XP_003491264.1| PREDICTED: eukaryotic translation initiation factor 4E type 2-like [Bombus impatiens]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/163 (66%), Positives = 133/163 (81%), Gaps = 3/163 (1%)

Query: 8   NVEFKESDLKRDDISLEDLP-LTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
           N E +  D K+ + +L  LP + I P+ HKLQY Y  WYSRR+PGK +S+QSYD NLKL+
Sbjct: 20  NDETQSKDNKKTEKNL--LPSIEISPNEHKLQYAYALWYSRRSPGKQSSIQSYDQNLKLV 77

Query: 67  QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
            +F SVEQFW +Y+HLVRP+E  +  D HLFKVG+KPMWEDEAN+ GGKW++RLRKG+ S
Sbjct: 78  GRFASVEQFWSLYSHLVRPSELTTSTDFHLFKVGIKPMWEDEANQKGGKWIVRLRKGLVS 137

Query: 127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           RCWENL+LAMLGEQFMVG+EICGAV+S+RFQED I VWNKT+S
Sbjct: 138 RCWENLVLAMLGEQFMVGEEICGAVVSIRFQEDIICVWNKTAS 180

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777580|ref|XP_623570.3| PREDICTED: eukaryotic translation initiation factor 4E type 2 [Apis mellifera]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 122/143 (85%)

Query: 27  PLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPN 86
           P+ I P+ HKLQY Y  WYSRR+PGK  S+QSYD NLKL+ +F SVEQFW +Y+HLVRP+
Sbjct: 38  PIEINPNEHKLQYAYALWYSRRSPGKQPSIQSYDQNLKLVGRFASVEQFWSLYSHLVRPS 97

Query: 87  EFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDE 146
           E  +  D HLFKVG+KPMWEDEAN+ GGKW++RLRKG+ SRCWENLILAMLGEQFMVG+E
Sbjct: 98  ELTTSTDFHLFKVGIKPMWEDEANQKGGKWIVRLRKGLVSRCWENLILAMLGEQFMVGEE 157

Query: 147 ICGAVISVRFQEDHISVWNKTSS 169
           ICGAV+S+RFQED I VWNKT+S
Sbjct: 158 ICGAVVSIRFQEDIICVWNKTAS 180

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778708|gb|EFZ09124.1| hypothetical protein SINV_00066 [Solenopsis invicta]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 123/143 (86%)

Query: 27  PLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPN 86
           P+ I P+ HKLQY Y  WYSRR+PGK TS+QSYD NLKLI +F SVEQFW +Y+HLVRP+
Sbjct: 37  PIEISPNEHKLQYAYALWYSRRSPGKQTSIQSYDQNLKLIGRFASVEQFWGLYSHLVRPS 96

Query: 87  EFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDE 146
           +  +  D HLFKVG+KPMWEDEAN+ GGKW++RLRKG+ SRCWENLILA+LGEQFMVG+E
Sbjct: 97  DLTTHTDFHLFKVGIKPMWEDEANQKGGKWIVRLRKGLVSRCWENLILAILGEQFMVGEE 156

Query: 147 ICGAVISVRFQEDHISVWNKTSS 169
           ICGAV+S+RFQED I VWNKT+S
Sbjct: 157 ICGAVVSIRFQEDIICVWNKTAS 179

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193662114|ref|XP_001947742.1| PREDICTED: eukaryotic translation initiation factor 4E type 2-like [Acyrthosiphon pisum]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 132/167 (79%), Gaps = 1/167 (0%)

Query: 2   SKMVLKNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDD 61
           SK V ++      D+   D  L ++PL+IP   HKLQ+QYWFW+SRR PGK  +  SYD 
Sbjct: 8   SKTVSEDENTTSKDMTLAD-KLINIPLSIPSGDHKLQHQYWFWFSRRFPGKPGNTPSYDQ 66

Query: 62  NLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLR 121
           NLK + +FGSVEQFW IY+H+VRP   QS  + HLFKVG+KPMWEDE+N  GGKW++R+R
Sbjct: 67  NLKYLARFGSVEQFWTIYSHMVRPCALQSHSEFHLFKVGIKPMWEDESNARGGKWVLRIR 126

Query: 122 KGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTS 168
           KG+ASRCWENLILAMLGEQFMVGDEICGAV+S+RFQED IS+WNKTS
Sbjct: 127 KGLASRCWENLILAMLGEQFMVGDEICGAVVSLRFQEDIISIWNKTS 173

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850464|ref|XP_003700815.1| PREDICTED: eukaryotic translation initiation factor 4E type 2-like [Megachile rotundata]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/173 (63%), Positives = 137/173 (79%), Gaps = 4/173 (2%)

Query: 1   MSKMVLKNVEFKESDLK-RDDISLEDLPLT---IPPHHHKLQYQYWFWYSRRTPGKVTSV 56
           +S+++  N E  + +++ +D+  +E  PL    I P+ HKLQY Y  WYSRRTPG   S+
Sbjct: 9   ISRLLKTNEESGDDEVQSKDNQKVEKDPLPPIEISPNEHKLQYAYALWYSRRTPGIQPSI 68

Query: 57  QSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKW 116
           QSYD NLKL+ +F SVEQFW +Y+HLVRP+E  +  D HLFKVG+KPMWEDEAN+ GGKW
Sbjct: 69  QSYDQNLKLVGRFASVEQFWSLYSHLVRPSELTTHTDFHLFKVGIKPMWEDEANQKGGKW 128

Query: 117 LIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           ++RLRKG+ SRCWENLILAMLGEQFMVG+EICGAV+S+RFQED I VWNKT+S
Sbjct: 129 IVRLRKGLVSRCWENLILAMLGEQFMVGEEICGAVVSIRFQEDIICVWNKTAS 181

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713186|ref|XP_003395128.1| PREDICTED: eukaryotic translation initiation factor 4E type 2-like [Bombus terrestris]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 106/163 (65%), Positives = 132/163 (80%), Gaps = 3/163 (1%)

Query: 8   NVEFKESDLKRDDISLEDLP-LTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
           N E +  D K+ +  L  LP + I P+ HKLQY Y  WYSRR+PGK +S+QSYD NLKL+
Sbjct: 20  NDETQSKDNKKTEKDL--LPSIEISPNEHKLQYAYALWYSRRSPGKQSSIQSYDQNLKLV 77

Query: 67  QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
            +F SVEQFW +Y+HLVRP+E  +  D HLFKVG+KPMWEDEAN+ GGKW++RLRKG+ S
Sbjct: 78  GRFASVEQFWSLYSHLVRPSELTTSTDFHLFKVGIKPMWEDEANQKGGKWIVRLRKGLVS 137

Query: 127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           RCWENL+LA+LGEQFMVG+EICGAV+S+RFQED I +WNKT+S
Sbjct: 138 RCWENLVLAILGEQFMVGEEICGAVVSIRFQEDIICLWNKTAS 180

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327281584|ref|XP_003225527.1| PREDICTED: eukaryotic translation initiation factor 4E type 2-like isoform 1 [Anolis carolinensis]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 127/163 (77%)

Query: 7   KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
           K+ E +++D  +   S++   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct: 48  KDGEKEKNDRDKSQSSIKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 107

Query: 67  QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
             F SVEQFW  Y+H++RP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct: 108 GTFASVEQFWRFYSHMIRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 167

Query: 127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct: 168 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 210

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148708234|gb|EDL40181.1| eukaryotic translation initiation factor 4E member 2, isoform CRA_f [Mus musculus]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 127/163 (77%)

Query: 7   KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
           K+ E +++D  +   S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct: 184 KDGEKEKTDRDKSQSSGKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 243

Query: 67  QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
             F SVEQFW+ Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct: 244 GTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 303

Query: 127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct: 304 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 346

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148708232|gb|EDL40179.1| eukaryotic translation initiation factor 4E member 2, isoform CRA_d [Mus musculus]

 Score =  231 bits (589), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 127/163 (77%)

Query: 7   KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
           K+ E +++D  +   S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct: 35  KDGEKEKTDRDKSQSSGKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 94

Query: 67  QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
             F SVEQFW+ Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct: 95  GTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 154

Query: 127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
           RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct: 155 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 197

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
MGI|MGI:1914440	245	Eif4e2 "eukaryotic translation	0.942	0.665	0.638	5.3e-56
UNIPROTKB|B8ZZ50	236	EIF4E2 "Eukaryotic translation	0.942	0.690	0.631	8.6e-56
UNIPROTKB|B8ZZJ9	234	EIF4E2 "Eukaryotic translation	0.942	0.696	0.631	8.6e-56
UNIPROTKB|B9A044	233	EIF4E2 "Eukaryotic translation	0.942	0.699	0.631	8.6e-56
UNIPROTKB|C9JEL3	213	EIF4E2 "Eukaryotic translation	0.942	0.765	0.631	8.6e-56
UNIPROTKB|O60573	245	EIF4E2 "Eukaryotic translation	0.942	0.665	0.631	8.6e-56
RGD|1307790	244	Eif4e2 "eukaryotic translation	0.809	0.573	0.716	8.6e-56
UNIPROTKB|E9PTG3	244	Eif4e2 "Protein Eif4e2" [Rattu	0.809	0.573	0.716	8.6e-56
UNIPROTKB|Q0II31	236	EIF4E2 "Eukaryotic translation	0.809	0.593	0.716	1.1e-55
UNIPROTKB|F1Q1E8	227	F1Q1E8 "Uncharacterized protei	0.809	0.616	0.716	1.1e-55

MGI|MGI:1914440 Eif4e2 "eukaryotic translation initiation factor 4E member 2" [Mus musculus (taxid:10090)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 104/163 (63%), Positives = 127/163 (77%)

Query:     7 KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
             K+ E +++D  +   S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct:    26 KDGEKEKTDRDKSQSSGKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 85

Query:    67 QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
               F SVEQFW+ Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct:    86 GTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 145

Query:   127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
             RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct:   146 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 188

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

UNIPROTKB|B8ZZ50 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 103/163 (63%), Positives = 127/163 (77%)

Query:     7 KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
             K+ E ++++  ++  S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct:    26 KDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 85

Query:    67 QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
               F SVEQFW  Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct:    86 GTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 145

Query:   127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
             RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct:   146 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 188

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|B8ZZJ9 EIF4E2 "Eukaryotic translation initiation factor 4E member 2, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 103/163 (63%), Positives = 127/163 (77%)

Query:     7 KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
             K+ E ++++  ++  S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct:    26 KDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 85

Query:    67 QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
               F SVEQFW  Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct:    86 GTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 145

Query:   127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
             RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct:   146 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 188

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|B9A044 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 103/163 (63%), Positives = 127/163 (77%)

Query:     7 KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
             K+ E ++++  ++  S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct:    26 KDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 85

Query:    67 QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
               F SVEQFW  Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct:    86 GTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 145

Query:   127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
             RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct:   146 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 188

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|C9JEL3 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 103/163 (63%), Positives = 127/163 (77%)

Query:     7 KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
             K+ E ++++  ++  S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct:    21 KDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 80

Query:    67 QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
               F SVEQFW  Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct:    81 GTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 140

Query:   127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
             RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct:   141 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 183

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|O60573 EIF4E2 "Eukaryotic translation initiation factor 4E type 2" [Homo sapiens (taxid:9606)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 103/163 (63%), Positives = 127/163 (77%)

Query:     7 KNVEFKESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLI 66
             K+ E ++++  ++  S +   +   P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I
Sbjct:    26 KDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQI 85

Query:    67 QKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS 126
               F SVEQFW  Y+H+VRP +     D HLFK G+KPMWED+AN+NGGKW+IRLRKG+AS
Sbjct:    86 GTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLAS 145

Query:   127 RCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSS 169
             RCWENLILAMLGEQFMVG+EICGAV+SVRFQED IS+WNKT+S
Sbjct:   146 RCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTAS 188

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000339 "RNA cap binding" evidence=TAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

RGD|1307790 Eif4e2 "eukaryotic translation initiation factor 4E family member 2" [Rattus norvegicus (taxid:10116)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 101/141 (71%), Positives = 118/141 (83%)

Query:    30 IP-PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
             +P P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I  F SVEQFW+ Y+H+VRP + 
Sbjct:    47 VPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDL 106

Query:    89 QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEIC 148
                 D HLFK G+KPMWED+AN+NGGKW+IRLRKG+ASRCWENLILAMLGEQFMVG+EIC
Sbjct:   107 TGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEIC 166

Query:   149 GAVISVRFQEDHISVWNKTSS 169
             GAV+SVRFQED IS+WNKT+S
Sbjct:   167 GAVVSVRFQEDIISIWNKTAS 187

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

UNIPROTKB|E9PTG3 Eif4e2 "Protein Eif4e2" [Rattus norvegicus (taxid:10116)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 101/141 (71%), Positives = 118/141 (83%)

Query:    30 IP-PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
             +P P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I  F SVEQFW+ Y+H+VRP + 
Sbjct:    47 VPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDL 106

Query:    89 QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEIC 148
                 D HLFK G+KPMWED+AN+NGGKW+IRLRKG+ASRCWENLILAMLGEQFMVG+EIC
Sbjct:   107 TGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEIC 166

Query:   149 GAVISVRFQEDHISVWNKTSS 169
             GAV+SVRFQED IS+WNKT+S
Sbjct:   167 GAVVSVRFQEDIISIWNKTAS 187

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q0II31 EIF4E2 "Eukaryotic translation initiation factor 4E family member 2" [Bos taurus (taxid:9913)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 101/141 (71%), Positives = 117/141 (82%)

Query:    30 IP-PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
             +P P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I  F SVEQFW  Y+H+VRP + 
Sbjct:    48 VPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDL 107

Query:    89 QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEIC 148
                 D HLFK G+KPMWED+AN+NGGKW+IRLRKG+ASRCWENLILAMLGEQFMVG+EIC
Sbjct:   108 TGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEIC 167

Query:   149 GAVISVRFQEDHISVWNKTSS 169
             GAV+SVRFQED IS+WNKT+S
Sbjct:   168 GAVVSVRFQEDIISIWNKTAS 188

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1Q1E8 F1Q1E8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 101/141 (71%), Positives = 117/141 (82%)

Query:    30 IP-PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
             +P P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I  F SVEQFW  Y+H+VRP + 
Sbjct:    42 VPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDL 101

Query:    89 QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEIC 148
                 D HLFK G+KPMWED+AN+NGGKW+IRLRKG+ASRCWENLILAMLGEQFMVG+EIC
Sbjct:   102 TGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEIC 161

Query:   149 GAVISVRFQEDHISVWNKTSS 169
             GAV+SVRFQED IS+WNKT+S
Sbjct:   162 GAVVSVRFQEDIISIWNKTAS 182

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FK59	IF4E5_ARATH	No assigned EC number	0.4753	0.9248	0.7239	yes	N/A
Q22888	IF4E4_CAEEL	No assigned EC number	0.5067	0.8381	0.6839	yes	N/A
O60573	IF4E2_HUMAN	No assigned EC number	0.6319	0.9421	0.6653	yes	N/A
Q10NQ9	IF4E3_ORYSJ	No assigned EC number	0.5185	0.7687	0.5859	yes	N/A
Q75AV8	IF4E_ASHGO	No assigned EC number	0.3455	0.7514	0.6161	yes	N/A
P07260	IF4E_YEAST	No assigned EC number	0.3455	0.7514	0.6103	yes	N/A
Q9P974	IF4E_CANGA	No assigned EC number	0.3308	0.7514	0.6220	yes	N/A
Q8BMB3	IF4E2_MOUSE	No assigned EC number	0.6380	0.9421	0.6653	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	1e-61
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	3e-22
PTZ00040	233	PTZ00040, PTZ00040, translation initiation factor	2e-13

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score =  187 bits (477), Expect = 1e-61
 Identities = 72/135 (53%), Positives = 90/135 (66%), Gaps = 3/135 (2%)

Query: 36  KLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLH 95
            LQ ++  WY RR PG     + Y+DNLK I  F +VE FW +Y ++ RP++     D H
Sbjct: 1   PLQNKWTLWYDRRPPGD--KSKDYEDNLKPIGTFDTVEDFWRLYNNIPRPSKLPLGSDYH 58

Query: 96  LFKVGVKPMWEDEANRNGGKWLIRLRKG-IASRCWENLILAMLGEQFMVGDEICGAVISV 154
           LFK G+KPMWED AN+NGGKW IRL K     R WE L+LA++GEQF   DEICG V+SV
Sbjct: 59  LFKKGIKPMWEDPANKNGGKWTIRLPKSQNLDRFWEELLLALIGEQFDESDEICGVVLSV 118

Query: 155 RFQEDHISVWNKTSS 169
           R +ED ISVW K +S
Sbjct: 119 RKKEDKISVWTKNAS 133

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score = 88.4 bits (219), Expect = 3e-22
 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 7/136 (5%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L + +  W+          ++S+ D LK I  F +VE+FW I  ++   +      D 
Sbjct: 37  HPLAFHWTLWF---LKPPEDGLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDY 93

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRC---WENLILAMLGEQF-MVGDEICGA 150
           ++F+ G++P WEDEAN NGGKW  +L+     R    W   +LA +GE     G EI G 
Sbjct: 94  NVFREGIRPEWEDEANMNGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGV 153

Query: 151 VISVRFQEDHISVWNK 166
           V ++R     +++W +
Sbjct: 154 VGNMRKGFYKLAIWTR 169

Length = 217

>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 28/170 (16%)

Query: 24  EDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLV 83
             +PL+ P     L Y++  W  +     +     Y D  K +  F SV++FW+++ ++ 
Sbjct: 30  TKIPLSTP---LPLSYKWVIW-EQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIP 85

Query: 84  RPNEF--------------QSFID-LHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRC 128
           +P+E               +  +D + +FK G++PMWED  N  GG +  R      S  
Sbjct: 86  QPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDVSPG 145

Query: 129 -----WENLILAMLGEQFMVGDEICGA----VISVRFQEDHISVWNKTSS 169
                W NL+LA++G        I G      +S RF    I +W     
Sbjct: 146 QIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNLG 195

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG1670|consensus	212		100.0
PTZ00040	233	translation initiation factor E4; Provisional	100.0
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	100.0
KOG1669|consensus	208		100.0
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	100.0

>KOG1670|consensus

Probab=100.00  E-value=9.7e-54  Score=347.54  Aligned_cols=136  Identities=40%  Similarity=0.818  Sum_probs=128.5

Q ss_pred             CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850         32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR  111 (173)
Q Consensus        32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  111 (173)
                      ...|||++.|||||...++.     .+|++.|+.|.+|+|||+||++|++|++||+|+.+|+|++||+||+||||||+|+
T Consensus        32 ~~~hpL~~~WTlW~l~~d~~-----ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~  106 (212)
T KOG1670|consen   32 HIKHPLQNNWTLWFLKNDRN-----KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANK  106 (212)
T ss_pred             ccccccccceeEEeecCCcc-----ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCcccc
Confidence            35899999999999986553     2899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEec---CCchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCCC
Q psy10850        112 NGGKWLIRLR---KGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLSL  172 (173)
Q Consensus       112 ~GG~~~i~~~---k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~~  172 (173)
                      +||||++.++   ++.+|.+|.++||++|||+|+++++|||+|+++|.+++||||||+++.|..
T Consensus       107 ~GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~  170 (212)
T KOG1670|consen  107 NGGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEE  170 (212)
T ss_pred             CCCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchH
Confidence            9999999997   457999999999999999999999999999999999999999999999864

>PTZ00040 translation initiation factor E4; Provisional

Probab=100.00  E-value=2.1e-49  Score=329.64  Aligned_cols=139  Identities=28%  Similarity=0.576  Sum_probs=125.5

Q ss_pred             CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccce---------------EEE
Q psy10850         32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFID---------------LHL   96 (173)
Q Consensus        32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~---------------~~l   96 (173)
                      ...|||+++|||||+.+.. +.....+|.++|++|++|+|||+||++|+||++||+|+.+++               |||
T Consensus        35 ~~~hpL~~~Wt~W~~~~~~-~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~l  113 (233)
T PTZ00040         35 STPLPLSYKWVIWEQVVKE-TIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMI  113 (233)
T ss_pred             CCCCcCCCcEEEEEEcCcc-cCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeee
Confidence            4579999999999987533 223567899999999999999999999999999999998874               999


Q ss_pred             EecCCccccccCCCCCCcEEEEEecC-----CchHHHHHHHHHHHhcCCCCCCCceeeEEE----EeeCCCcEEEEecCC
Q psy10850         97 FKVGVKPMWEDEANRNGGKWLIRLRK-----GIASRCWENLILAMLGEQFMVGDEICGAVI----SVRFQEDHISVWNKT  167 (173)
Q Consensus        97 FK~gI~P~WEDp~N~~GG~~~i~~~k-----~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~----s~R~~~~~IsIW~~~  167 (173)
                      ||+||+||||||+|++||+|++++++     +.+|++|++|||++|||+|+.+++||||++    |+|++.++|+||+++
T Consensus       114 FK~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~  193 (233)
T PTZ00040        114 FKDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTN  193 (233)
T ss_pred             ecCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCC
Confidence            99999999999999999999999954     468999999999999999998999999996    778889999999999


Q ss_pred             CCCC
Q psy10850        168 SSLS  171 (173)
Q Consensus       168 ~~~~  171 (173)
                      +++.
T Consensus       194 ~~d~  197 (233)
T PTZ00040        194 LGDQ  197 (233)
T ss_pred             CCCH
Confidence            9875

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=100.00  E-value=1.2e-48  Score=308.81  Aligned_cols=134  Identities=49%  Similarity=0.955  Sum_probs=122.7

Q ss_pred             CCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCCCCcE
Q psy10850         36 KLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGK  115 (173)
Q Consensus        36 pL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~~GG~  115 (173)
                      ||+++|||||+....  ....++|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|++||+
T Consensus         1 pL~~~Wt~w~~~~~~--~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~   78 (165)
T PF01652_consen    1 PLQNKWTFWYDKKQK--NSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGR   78 (165)
T ss_dssp             EEEEEEEEEEEECCC--CCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEE
T ss_pred             CcCCEEEEEEEecCC--CCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccE
Confidence            899999999995432  335689999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCC---chHHHHHHHHHHHhcCCCCCC-CceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        116 WLIRLRKG---IASRCWENLILAMLGEQFMVG-DEICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       116 ~~i~~~k~---~~d~~W~~lll~~IGe~f~~~-~~I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      |++++++.   .++++|++|||++|||+|+.. ++||||++|+|++.++|+||+++++++
T Consensus        79 ~~i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~  138 (165)
T PF01652_consen   79 WIIRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDE  138 (165)
T ss_dssp             EEEEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-H
T ss_pred             EEEEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCH
Confidence            99999988   999999999999999999765 899999999999999999999998764

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>KOG1669|consensus

Probab=100.00  E-value=4.8e-47  Score=301.75  Aligned_cols=140  Identities=60%  Similarity=1.102  Sum_probs=133.8

Q ss_pred             CCCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCC
Q psy10850         31 PPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEAN  110 (173)
Q Consensus        31 ~~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N  110 (173)
                      ....|||++..+|||..+.+|.  ..++|++++++|++|.|||+||++|.|+++|+.|+...++||||+||+|+|||++|
T Consensus        26 ~d~dh~l~y~~t~~y~~r~~Gv--~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN  103 (208)
T KOG1669|consen   26 MDMDHPLQYVYTFWYERRTPGV--SKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKAN  103 (208)
T ss_pred             CCCCCcceEEEEEEEEecCCCC--ChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcCC
Confidence            3568999999999999887764  48899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCCC
Q psy10850        111 RNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLSL  172 (173)
Q Consensus       111 ~~GG~~~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~~  172 (173)
                      .|||+|+|+++|+.+.++||+||++++||+|..+|+|||+|+|+|.++++||||++++++-.
T Consensus       104 ~nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta  165 (208)
T KOG1669|consen  104 CNGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTA  165 (208)
T ss_pred             CCCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999998753

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-40  Score=266.25  Aligned_cols=138  Identities=30%  Similarity=0.627  Sum_probs=125.6

Q ss_pred             CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850         32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR  111 (173)
Q Consensus        32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  111 (173)
                      ...|||+..|||||..++.   ...+.|.+.|+.|++|+|||+||.+.++|+.++.||..++|++||+||+|+|||++|+
T Consensus        34 ~~~hpl~~~wtlw~l~p~e---~g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~  110 (217)
T COG5053          34 MNKHPLAFHWTLWFLKPPE---DGLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANM  110 (217)
T ss_pred             hhcCccccceEEEEecCCc---cchhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccC
Confidence            4569999999999987554   2344599999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCC---chHHHHHHHHHHHhcCCCC-CCCceeeEEEEeeCCCcEEEEecCCCCCCC
Q psy10850        112 NGGKWLIRLRKG---IASRCWENLILAMLGEQFM-VGDEICGAVISVRFQEDHISVWNKTSSLSL  172 (173)
Q Consensus       112 ~GG~~~i~~~k~---~~d~~W~~lll~~IGe~f~-~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~~  172 (173)
                      +||+|.+.++..   .++++|...++++|||+++ .+.+|||+|++.|++.++|+||++++.|..
T Consensus       111 ~Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~d  175 (217)
T COG5053         111 NGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKD  175 (217)
T ss_pred             CCCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHH
Confidence            999999999753   4889999999999999995 577999999999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
2jgb_A	195	Structure Of Human Eif4e Homologous Protein 4ehp Wi		6e-60
2wmc_A	178	Crystal Structure Of Eukaryotic Initiation Factor 4		1e-24
2idv_A	177	Crystal Structure Of Wheat C113s Mutant Eif4e Bound		2e-24
2idr_A	177	Crystal Structure Of Translation Initiation Factor		4e-24
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		8e-24
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		2e-23
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		2e-23
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		2e-23
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		2e-23
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		2e-22
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		1e-21
4b6v_A	207	The Third Member Of The Eif4e Family Represses Gene		7e-19
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		9e-18
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		9e-18
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		2e-16

>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195

Iteration: 1
 Score =  226 bits (576), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 115/138 (83%)
Query: 32  PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSF 91
           P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I  F SVEQFW  Y+H+VRP +    
Sbjct: 12  PAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGH 71
Query: 92  IDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAV 151
            D HLFK G+KPMWED+AN+NGGKW+IRLRKG+ASRCWENLILAMLGEQFMVG+EICGAV
Sbjct: 72  SDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAV 131
Query: 152 ISVRFQEDHISVWNKTSS 169
           +SVRFQED IS+WNKT+S
Sbjct: 132 VSVRFQEDIISIWNKTAS 149

>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L+  + FW+   TP   +   ++  +++ I  F +VE+FW IY ++  P +     D 
Sbjct: 3   HLLENSWTFWFD--TPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISV 154
           + FK  ++P WED    NGGKW     KG +   W   +LAM+GEQF  GDEICGAV++V
Sbjct: 61  YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 155 RFQEDHISVWNKTSS 169
           R + + IS+W K +S
Sbjct: 121 RGRAEKISIWTKNAS 135

>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L+  + FW+    P   +   ++   +  I  F +VE FW +Y ++  P++     D 
Sbjct: 2   HPLENAWTFWFD--NPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADF 59
Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISV 154
           H FK  ++P WED  + NGGKW I   +G +   W + +LAM+GEQF  GDEICGAV+SV
Sbjct: 60  HCFKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSV 119
Query: 155 RFQEDHISVWNKTSS 169
           R +++ +++W K ++
Sbjct: 120 RQKQERVAIWTKNAA 134

>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177

Iteration: 1
 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L+  + FW+    P   +   ++   +  I  F +VE FW +Y ++  P++     D 
Sbjct: 2   HPLENAWTFWFD--NPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADF 59
Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISV 154
           H FK  ++P WED    NGGKW I   +G +   W + +LAM+GEQF  GDEICGAV+SV
Sbjct: 60  HCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSV 119
Query: 155 RFQEDHISVWNKTSS 169
           R +++ +++W K ++
Sbjct: 120 RQKQERVAIWTKNAA 134

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score =  106 bits (264), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 12/141 (8%)
Query: 31  PPHH--HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
           P H+  H LQ ++  W+ ++   K     ++  NL+LI KF +VE FW +Y H+   +  
Sbjct: 31  PEHYIKHPLQNRWALWFFKKDKSK-----TWQANLRLISKFDTVEDFWALYNHIQLSSNL 85
Query: 89  QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRL----RKGIASRCWENLILAMLGEQF-MV 143
               D  LFK G++PMWEDE N+ GG+WLI L    R+    R W   +L ++GE F   
Sbjct: 86  MPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDY 145
Query: 144 GDEICGAVISVRFQEDHISVW 164
            D++CGAV++VR + D I++W
Sbjct: 146 SDDVCGAVVNVRAKGDKIAIW 166

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Query: 31  PPHH--HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
           P H+  H LQ ++  W+ +    K     ++  NL+LI KF +VE FW +Y H+   +  
Sbjct: 31  PEHYIKHPLQNRWALWFFKNDKSK-----TWQANLRLISKFDTVEDFWALYNHIQLSSNL 85
Query: 89  QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRL----RKGIASRCWENLILAMLGEQF-MV 143
               D  LFK G++PMWEDE N+ GG+WLI L    R+    R W   +L ++GE F   
Sbjct: 86  MPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDY 145
Query: 144 GDEICGAVISVRFQEDHISVW 164
            D++CGAV++VR + D I++W
Sbjct: 146 SDDVCGAVVNVRAKGDKIAIW 166

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Query: 31  PPHH--HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
           P H+  H LQ ++  W+ +    K     ++  NL+LI KF +VE FW +Y H+   +  
Sbjct: 54  PEHYIKHPLQNRWALWFFKNDKSK-----TWQANLRLISKFDTVEDFWALYNHIQLSSNL 108
Query: 89  QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRL----RKGIASRCWENLILAMLGEQF-MV 143
               D  LFK G++PMWEDE N+ GG+WLI L    R+    R W   +L ++GE F   
Sbjct: 109 MPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDY 168
Query: 144 GDEICGAVISVRFQEDHISVW 164
            D++CGAV++VR + D I++W
Sbjct: 169 SDDVCGAVVNVRAKGDKIAIW 189

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Query: 31  PPHH--HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
           P H+  H LQ ++  W+ +    K     ++  NL+LI KF +VE FW +Y H+   +  
Sbjct: 4   PEHYIKHPLQNRWALWFFKNDKSK-----TWQANLRLISKFDTVEDFWALYNHIQLSSNL 58
Query: 89  QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRL----RKGIASRCWENLILAMLGEQF-MV 143
               D  LFK G++PMWEDE N+ GG+WLI L    R+    R W   +L ++GE F   
Sbjct: 59  MPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDY 118
Query: 144 GDEICGAVISVRFQEDHISVW 164
            D++CGAV++VR + D I++W
Sbjct: 119 SDDVCGAVVNVRAKGDKIAIW 139

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Query: 31  PPHH--HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEF 88
           P H+  H LQ ++  W+ +    K     ++  NL+LI KF +VE FW +Y H+   +  
Sbjct: 5   PEHYIKHPLQNRWALWFFKNDKSK-----TWQANLRLISKFDTVEDFWALYNHIQLSSNL 59
Query: 89  QSFIDLHLFKVGVKPMWEDEANRNGGKWLIRL----RKGIASRCWENLILAMLGEQF-MV 143
               D  LFK G++PMWEDE N+ GG+WLI L    R+    R W   +L ++GE F   
Sbjct: 60  MPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDY 119
Query: 144 GDEICGAVISVRFQEDHISVW 164
            D++CGAV++VR + D I++W
Sbjct: 120 SDDVCGAVVNVRAKGDKIAIW 140

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 33  HHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFI 92
           + H L   +  WY      K     S++D    I  F +VE FW +Y H+  P+E +   
Sbjct: 68  YKHPLMNVWTLWYLENDRSK-----SWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGS 122
Query: 93  DLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIAS---RCWENLILAMLGEQFMVGDEICG 149
           D  LFK  ++PMWED AN+ GG+W+I L K   +     W +++L ++GE F   D+ICG
Sbjct: 123 DYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICG 182
Query: 150 AVISVRFQEDHISVW 164
           AVI++R + + IS+W
Sbjct: 183 AVINIRGKSNKISIW 197

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 10/139 (7%)
Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H LQ  +  WY      K    + ++D LK +  F +VE FW +Y H+   +      D 
Sbjct: 3   HPLQCHWALWYL-----KADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDY 57
Query: 95  HLFKVGVKPMWEDEANRNGGKWLI----RLRKGIASRCWENLILAMLGEQFM-VGDEICG 149
           +LFK G+KPMWEDE N  GG+WL+    + R  +    W  L++A++GEQF   G+ ICG
Sbjct: 58  YLFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICG 117
Query: 150 AVISVRFQEDHISVWNKTS 168
           AV++VR + D +S+W + S
Sbjct: 118 AVVNVRQKGDKVSLWTRDS 136

>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 20  DISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIY 79
           D +L  LP    P    L   + FW  R  PG   +      NLK I    +V+ FW +Y
Sbjct: 17  DKALSALPPE--PGGVPLHSPWTFWLDRSLPG--ATAAECASNLKKIYTVQTVQIFWSVY 72
Query: 80  THLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGE 139
            ++            HL +   +P+WE+E+N  GG W +++ K   S  W+ L+LA +GE
Sbjct: 73  NNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGE 132
Query: 140 QFM----VGDEICGAVISVRFQEDHISVWNKTSSL 170
           QF       DEI G  +SVR +ED + VWN  +SL
Sbjct: 133 QFTDCAAADDEIIGVSVSVRDREDVVQVWNVNASL 167

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 27  PLTIPPHHHKLQ--YQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVR 84
           PL  P   H LQ  + Y+ +  R+          +D+ L+ +  F ++E FW + TH VR
Sbjct: 2   PLGSPEFPHPLQDSWSYYLFQFRK-------ALDWDECLEKVATFSTIEDFWSVLTHTVR 54
Query: 85  PNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRLR-KGIASRCWENLILAMLGEQFMV 143
           P E     DL++FK  + P WED  N NGG+WLI +  +      W+ L++ ++G  +  
Sbjct: 55  PREITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDT 114
Query: 144 GDE---ICGAVISVRFQEDHISVW 164
            +E   ICGAV   R +   +SVW
Sbjct: 115 DEEDRQICGAVFQPRSRGSKLSVW 138

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L  ++  WY++     V   +S+ D L+ +  F +VE+FW I  ++  P+E     D 
Sbjct: 37  HPLNTKWTLWYTKPA---VDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93
Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIA--SRCWENLILAMLGEQFMVGD-EICGAV 151
           H+F+  V+P WEDEAN  GGKW  +LR   A     W   +LA++GE     D +I G V
Sbjct: 94  HVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVV 153
Query: 152 ISVRFQEDHISVWNKT 167
           +S+R   +  ++W K+
Sbjct: 154 LSIRKGGNKFALWTKS 169

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L  ++  WY++     V   +S+ D L+ +  F +VE+FW I  ++  P+E     D 
Sbjct: 37  HPLNTKWTLWYTKPA---VDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93
Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRL--RKGIASRCWENLILAMLGEQFMVGD-EICGAV 151
           H+F+  V+P WEDEAN  GGKW  +L  +       W   +LA++GE     D +I G V
Sbjct: 94  HVFRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVV 153
Query: 152 ISVRFQEDHISVWNK 166
           +S+R   +  ++W K
Sbjct: 154 LSIRKGGNKFALWTK 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	5e-47
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	2e-46
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	4e-43
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	1e-39
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	4e-39
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	8e-39
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	1e-38

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score =  150 bits (380), Expect = 5e-47
 Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 2/135 (1%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L+  + FW+            ++   +  I  F +VE FW +Y ++  P++     D 
Sbjct: 2   HPLENAWTFWFDNPQGKSRQ--VAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADF 59

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISV 154
           H FK  ++P WED    NGGKW I   +G +   W + +LAM+GEQF  GDEICGAV+SV
Sbjct: 60  HCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSV 119

Query: 155 RFQEDHISVWNKTSS 169
           R +++ +++W K ++
Sbjct: 120 RQKQERVAIWTKNAA 134

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score =  149 bits (378), Expect = 2e-46
 Identities = 100/138 (72%), Positives = 115/138 (83%)

Query: 32  PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSF 91
           P  H LQY Y FWYSRRTPG+ TS QSY+ N+K I  F SVEQFW  Y+H+VRP +    
Sbjct: 12  PAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGH 71

Query: 92  IDLHLFKVGVKPMWEDEANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAV 151
            D HLFK G+KPMWED+AN+NGGKW+IRLRKG+ASRCWENLILAMLGEQFMVG+EICGAV
Sbjct: 72  SDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAV 131

Query: 152 ISVRFQEDHISVWNKTSS 169
           +SVRFQED IS+WNKT+S
Sbjct: 132 VSVRFQEDIISIWNKTAS 149

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score =  140 bits (355), Expect = 4e-43
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 27  PLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPN 86
           PL  P   H LQ  + ++  +           +D+ L+ +  F ++E FW + TH VRP 
Sbjct: 2   PLGSPEFPHPLQDSWSYYLFQFRKAL-----DWDECLEKVATFSTIEDFWSVLTHTVRPR 56

Query: 87  EFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRL-RKGIASRCWENLILAMLGEQFMV-- 143
           E     DL++FK  + P WED  N NGG+WLI +  +      W+ L++ ++G  +    
Sbjct: 57  EITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDE 116

Query: 144 -GDEICGAVISVRFQEDHISVWNKTSS 169
              +ICGAV   R +   +SVW  + +
Sbjct: 117 EDRQICGAVFQPRSRGSKLSVWLTSDN 143

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score =  132 bits (333), Expect = 1e-39
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 10/162 (6%)

Query: 13  ESDLKRDDISLEDLPLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSV 72
            +  +    S +++        H LQ ++  W+ +    K     ++  NL+LI KF +V
Sbjct: 15  PTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSK-----TWQANLRLISKFDTV 69

Query: 73  EQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNGGKWLIRL----RKGIASRC 128
           E FW +Y H+   +      D  LFK G++PMWEDE N+ GG+WLI L    R+    R 
Sbjct: 70  EDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRF 129

Query: 129 WENLILAMLGEQFM-VGDEICGAVISVRFQEDHISVWNKTSS 169
           W   +L ++GE F    D++CGAV++VR + D I++W     
Sbjct: 130 WLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECE 171

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score =  130 bits (329), Expect = 4e-39
 Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 10/141 (7%)

Query: 34  HHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFID 93
            H LQ ++  W+ +    K     ++  NL+LI KF +VE FW +Y H+   +      D
Sbjct: 9   KHPLQNRWALWFFKNDKSK-----TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCD 63

Query: 94  LHLFKVGVKPMWEDEANRNGGKWLIRLRK----GIASRCWENLILAMLGEQFM-VGDEIC 148
             LFK G++PMWEDE N+ GG+WLI L K        R W   +L ++GE F    D++C
Sbjct: 64  YSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 123

Query: 149 GAVISVRFQEDHISVWNKTSS 169
           GAV++VR + D I++W     
Sbjct: 124 GAVVNVRAKGDKIAIWTTECE 144

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score =  130 bits (328), Expect = 8e-39
 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 6/138 (4%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L  ++  WY++    K    +S+ D L+ +  F +VE+FW I  ++  P+E     D 
Sbjct: 37  HPLNTKWTLWYTKPAVDKS---ESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRLRKGIA--SRCWENLILAMLGEQFMV-GDEICGAV 151
           H+F+  V+P WEDEAN  GGKW  +LR   A     W   +LA++GE       +I G V
Sbjct: 94  HVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVV 153

Query: 152 ISVRFQEDHISVWNKTSS 169
           +S+R   +  ++W K+  
Sbjct: 154 LSIRKGGNKFALWTKSED 171

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score =  129 bits (325), Expect = 1e-38
 Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 10/141 (7%)

Query: 34  HHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFID 93
            H LQ  +  WY +    K      ++D LK +  F +VE FW +Y H+   +      D
Sbjct: 2   RHPLQCHWALWYLKADRSK-----DWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSD 56

Query: 94  LHLFKVGVKPMWEDEANRNGGKWLIRLRK----GIASRCWENLILAMLGEQFM-VGDEIC 148
            +LFK G+KPMWEDE N  GG+WL+ + K     +    W  L++A++GEQF   G+ IC
Sbjct: 57  YYLFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYIC 116

Query: 149 GAVISVRFQEDHISVWNKTSS 169
           GAV++VR + D +S+W + S 
Sbjct: 117 GAVVNVRQKGDKVSLWTRDSL 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	100.0
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	100.0
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	100.0
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	100.0
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	100.0
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	100.0
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	100.0
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	100.0
1ztp_A	251	Basophilic leukemia expressed protein BLES03; HS.4	98.71

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=100.00  E-value=4.7e-55  Score=354.72  Aligned_cols=143  Identities=70%  Similarity=1.264  Sum_probs=134.8

Q ss_pred             CCCCCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccC
Q psy10850         29 TIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDE  108 (173)
Q Consensus        29 ~~~~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp  108 (173)
                      ..++..|||+++|||||+.+.+++.....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||
T Consensus         9 ~~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~   88 (195)
T 2jgb_A            9 VPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDD   88 (195)
T ss_dssp             CCCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTST
T ss_pred             cCCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCC
Confidence            34568899999999999987655555678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEecCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        109 ANRNGGKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       109 ~N~~GG~~~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      +|++||+|+|+++|+.+|++|++|||++|||+|+.+++|||||+|+|+++++|+||++++++.
T Consensus        89 ~N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~  151 (195)
T 2jgb_A           89 ANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQ  151 (195)
T ss_dssp             TTTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCH
T ss_pred             CCCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCH
Confidence            999999999999999999999999999999999999999999999999999999999998764

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=100.00  E-value=9.2e-55  Score=348.26  Aligned_cols=136  Identities=35%  Similarity=0.781  Sum_probs=129.1

Q ss_pred             CCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCCCC
Q psy10850         34 HHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNG  113 (173)
Q Consensus        34 ~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~~G  113 (173)
                      .|||+++|||||+.+..  +....+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++|
T Consensus         1 ~HpL~~~Wt~W~~~~~~--~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~G   78 (177)
T 2idr_A            1 AHPLENAWTFWFDNPQG--KSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANG   78 (177)
T ss_dssp             CCEEEEEEEEEEECTTC--SSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTC
T ss_pred             CCCCCCeEEEEEEcCCC--CCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCC
Confidence            59999999999997543  2457799999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEecCCchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        114 GKWLIRLRKGIASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       114 G~~~i~~~k~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      |+|+++++|+.+|++|++|||++|||+|+.+++|||||+|+|+++++|+||+++++++
T Consensus        79 G~w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~  136 (177)
T 2idr_A           79 GKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANE  136 (177)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCH
T ss_pred             CEEEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCH
Confidence            9999999999999999999999999999888999999999999999999999999764

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=100.00  E-value=6.9e-53  Score=340.70  Aligned_cols=135  Identities=38%  Similarity=0.823  Sum_probs=125.1

Q ss_pred             CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850         32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR  111 (173)
Q Consensus        32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  111 (173)
                      ...|||+++|||||+.+.+     ..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|+
T Consensus         7 ~~~hpL~~~Wt~W~~~~~~-----~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~   81 (190)
T 1l8b_A            7 YIKHPLQNRWALWFFKNDK-----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNK   81 (190)
T ss_dssp             --CCEEEEEEEEEEEECCS-----SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTT
T ss_pred             cccCCCCCeEEEEEEcCCC-----ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCC
Confidence            4689999999999997643     45799999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCCc----hHHHHHHHHHHHhcCCC-CCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        112 NGGKWLIRLRKGI----ASRCWENLILAMLGEQF-MVGDEICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       112 ~GG~~~i~~~k~~----~d~~W~~lll~~IGe~f-~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      +||+|++++++..    +|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++.
T Consensus        82 ~GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~  146 (190)
T 1l8b_A           82 RGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENR  146 (190)
T ss_dssp             TCEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCH
T ss_pred             CCCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCH
Confidence            9999999998754    59999999999999999 668899999999999999999999998864

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=100.00  E-value=3.6e-53  Score=342.35  Aligned_cols=140  Identities=32%  Similarity=0.679  Sum_probs=127.1

Q ss_pred             CCCCCCCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccc
Q psy10850         27 PLTIPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWE  106 (173)
Q Consensus        27 ~~~~~~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WE  106 (173)
                      |...+...|||+++|||||+.+.+     ..+|+++|++|++|+|||+||++||||++|++|+.+++|||||+||+||||
T Consensus         2 ~~~~~~~~HpL~~~Wt~W~~~~~~-----~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WE   76 (189)
T 3hxi_A            2 PLGSPEFPHPLQDSWSYYLFQFRK-----ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWE   76 (189)
T ss_dssp             -----CCCCEEEEEEEEEEECCCT-----TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTT
T ss_pred             CCCCCCccCCCCCeEEEEEECCCC-----ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCC
Confidence            345567889999999999997543     358999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcEEEEEecCC-chHHHHHHHHHHHhcCCC-CCCCc--eeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        107 DEANRNGGKWLIRLRKG-IASRCWENLILAMLGEQF-MVGDE--ICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       107 Dp~N~~GG~~~i~~~k~-~~d~~W~~lll~~IGe~f-~~~~~--I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      ||+|++||+|+|+++|. .+|++|++|||++|||+| +.+++  |||||+|+|+++++|+||++++++.
T Consensus        77 D~~N~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~  145 (189)
T 3hxi_A           77 DPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEE  145 (189)
T ss_dssp             SHHHHTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCH
T ss_pred             CcCCCCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCH
Confidence            99999999999999987 699999999999999999 66677  9999999999999999999999864

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=100.00  E-value=1.5e-52  Score=344.97  Aligned_cols=135  Identities=38%  Similarity=0.824  Sum_probs=126.3

Q ss_pred             CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850         32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR  111 (173)
Q Consensus        32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  111 (173)
                      ...|||+++|||||+.+.     ...+|+++|++|++|+|||+||++||||++|++|+.+++|||||+||+||||||+|+
T Consensus        34 ~~~hpL~~~Wt~W~~~~~-----~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~  108 (217)
T 1ipb_A           34 YIKHPLQNRWALWFFKND-----KSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNK  108 (217)
T ss_dssp             TSCCEEEEEEEEEEECCC-----TTSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTT
T ss_pred             ccCCCCCCeEEEEEEeCC-----cccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCC
Confidence            357999999999999754     256899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCCc----hHHHHHHHHHHHhcCCC-CCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        112 NGGKWLIRLRKGI----ASRCWENLILAMLGEQF-MVGDEICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       112 ~GG~~~i~~~k~~----~d~~W~~lll~~IGe~f-~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      +||+|+|+++|..    +|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++.
T Consensus       109 ~GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~  173 (217)
T 1ipb_A          109 RGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENR  173 (217)
T ss_dssp             TCEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCH
T ss_pred             CCCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCH
Confidence            9999999998864    59999999999999999 778899999999999999999999999764

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=100.00  E-value=2.3e-52  Score=337.62  Aligned_cols=133  Identities=39%  Similarity=0.825  Sum_probs=124.6

Q ss_pred             CCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCCCC
Q psy10850         34 HHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNG  113 (173)
Q Consensus        34 ~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~~G  113 (173)
                      .|||+++|||||+..+     ...+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++|
T Consensus         2 ~HpL~~~Wt~W~~~~~-----~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~G   76 (189)
T 3m94_A            2 RHPLQCHWALWYLKAD-----RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKG   76 (189)
T ss_dssp             CCEEEEEEEEEEECCC-----SSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTC
T ss_pred             CCCCCCcEEEEEECCC-----CccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCC
Confidence            6999999999998643     34689999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEecCC----chHHHHHHHHHHHhcCCC-CCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        114 GKWLIRLRKG----IASRCWENLILAMLGEQF-MVGDEICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       114 G~~~i~~~k~----~~d~~W~~lll~~IGe~f-~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      |+|+|+++|.    .+|++|++|||++|||+| +.+++|||||+|+|+++++|+||++++++.
T Consensus        77 Gkw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~  139 (189)
T 3m94_A           77 GRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKD  139 (189)
T ss_dssp             EEEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCH
T ss_pred             CEEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCH
Confidence            9999999764    579999999999999999 468999999999999999999999998864

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=100.00  E-value=1.1e-51  Score=339.11  Aligned_cols=134  Identities=34%  Similarity=0.704  Sum_probs=125.1

Q ss_pred             CCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCC
Q psy10850         32 PHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANR  111 (173)
Q Consensus        32 ~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~  111 (173)
                      ...|||+++|||||+.+..   ....+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus        34 ~~~hpL~~~Wt~W~~~~~~---~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~  110 (213)
T 1ap8_A           34 DVKHPLNTKWTLWYTKPAV---DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANA  110 (213)
T ss_dssp             CCSSEEEEEEEEEEECCCG---GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTT
T ss_pred             CCccccCCcEEEEEEcCCc---ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCC
Confidence            4789999999999997643   3456899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEec--CCchHHHHHHHHHHHhcCCCCCCC-ceeeEEEEeeCCCcEEEEecCCC
Q psy10850        112 NGGKWLIRLR--KGIASRCWENLILAMLGEQFMVGD-EICGAVISVRFQEDHISVWNKTS  168 (173)
Q Consensus       112 ~GG~~~i~~~--k~~~d~~W~~lll~~IGe~f~~~~-~I~Gvv~s~R~~~~~IsIW~~~~  168 (173)
                      +||||+|+++  ++.+|++|++|||++|||+|+..+ +|||||+|+|++.++|+||++++
T Consensus       111 ~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~  170 (213)
T 1ap8_A          111 KGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE  170 (213)
T ss_dssp             TSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS
T ss_pred             CCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC
Confidence            9999999983  458999999999999999997766 99999999999999999999998

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=100.00  E-value=1.3e-49  Score=333.18  Aligned_cols=137  Identities=36%  Similarity=0.748  Sum_probs=126.4

Q ss_pred             CCCCCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCC
Q psy10850         30 IPPHHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEA  109 (173)
Q Consensus        30 ~~~~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~  109 (173)
                      .....|||+++|||||+.+..     ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+|+||||+
T Consensus        65 ~~~~kHpL~~~WtlW~~~~~~-----~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~  139 (248)
T 4axg_A           65 EHLYKHPLMNVWTLWYLENDR-----SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAA  139 (248)
T ss_dssp             -CCCCCEEEEEEEEEEESCSC-----CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTT
T ss_pred             ccccCCCCCCeEEEEEeeCCC-----ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCcc
Confidence            335679999999999986543     457999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCC---chHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        110 NRNGGKWLIRLRKG---IASRCWENLILAMLGEQFMVGDEICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       110 N~~GG~~~i~~~k~---~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      |++||+|+|++.|.   .+|++|++|+|++|||+|+.+++||||++|+|++.++|+||++++++.
T Consensus       140 N~~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~  204 (248)
T 4axg_A          140 NKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNE  204 (248)
T ss_dssp             TTTCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCH
T ss_pred             CCCccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCH
Confidence            99999999999765   468999999999999999988999999999999999999999998874

>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A

Probab=98.71  E-value=1.8e-08  Score=83.94  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=52.2

Q ss_pred             CCCCCCcEEEEEecC-CchHHHHHHHHHHHhcCCCCCCCceeeEEEEeeCC---CcEEEEecCCCCCC
Q psy10850        108 EANRNGGKWLIRLRK-GIASRCWENLILAMLGEQFMVGDEICGAVISVRFQ---EDHISVWNKTSSLS  171 (173)
Q Consensus       108 p~N~~GG~~~i~~~k-~~~d~~W~~lll~~IGe~f~~~~~I~Gvv~s~R~~---~~~IsIW~~~~~~~  171 (173)
                      +.|..||||.|.+.+ ..+|.+|+++++++|+++      +||++||+|..   .++|+|||++..|.
T Consensus       121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~  182 (251)
T 1ztp_A          121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDR  182 (251)
T ss_dssp             HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCH
T ss_pred             HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCH
Confidence            469999999999988 789999999999999654      59999999986   89999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	6e-42
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	7e-39

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  136 bits (344), Expect = 6e-42
 Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 10/140 (7%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H LQ ++  W+ +    K     ++  NL+LI KF +VE FW +Y H+   +      D 
Sbjct: 2   HPLQNRWALWFFKNDKSK-----TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 56

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRL----RKGIASRCWENLILAMLGEQF-MVGDEICG 149
            LFK G++PMWEDE N+ GG+WLI L    R+    R W   +L ++GE F    D++CG
Sbjct: 57  SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 116

Query: 150 AVISVRFQEDHISVWNKTSS 169
           AV++VR + D I++W     
Sbjct: 117 AVVNVRAKGDKIAIWTTECE 136

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (326), Expect = 7e-39
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)

Query: 35  HKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDL 94
           H L  ++  WY++    K  S   + D L+ +  F +VE+FW I  ++  P+E     D 
Sbjct: 37  HPLNTKWTLWYTKPAVDKSES---WSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDY 93

Query: 95  HLFKVGVKPMWEDEANRNGGKWLIRL--RKGIASRCWENLILAMLGEQFMVG-DEICGAV 151
           H+F+  V+P WEDEAN  GGKW  +L  +       W   +LA++GE       +I G V
Sbjct: 94  HVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVV 153

Query: 152 ISVRFQEDHISVWNKTSS 169
           +S+R   +  ++W K+  
Sbjct: 154 LSIRKGGNKFALWTKSED 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	100.0
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	100.0

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-47  Score=313.11  Aligned_cols=135  Identities=33%  Similarity=0.683  Sum_probs=123.3

Q ss_pred             CCCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCCC
Q psy10850         33 HHHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRN  112 (173)
Q Consensus        33 ~~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~~  112 (173)
                      ..|||+++|||||+.+..   ....+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+||||+|++
T Consensus        35 ~kHpL~~~Wt~wy~~~~~---~~~~~y~~~l~~I~~f~TvE~Fw~~~~~i~~ps~l~~~~~~~lFk~gI~P~WED~~N~n  111 (213)
T d1ap8a_          35 VKHPLNTKWTLWYTKPAV---DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAK  111 (213)
T ss_dssp             CSSEEEEEEEEEEECCCG---GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTT
T ss_pred             cCCcCCCcEEEEEEcCCC---CcccchhhhceEEEEEccHHHHHHHHHhCCCHHHCCcccEEEEEecCccCCCCCcccCC
Confidence            469999999999997543   23568999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecC--CchHHHHHHHHHHHhcCCCC-CCCceeeEEEEeeCCCcEEEEecCCCCC
Q psy10850        113 GGKWLIRLRK--GIASRCWENLILAMLGEQFM-VGDEICGAVISVRFQEDHISVWNKTSSL  170 (173)
Q Consensus       113 GG~~~i~~~k--~~~d~~W~~lll~~IGe~f~-~~~~I~Gvv~s~R~~~~~IsIW~~~~~~  170 (173)
                      ||+|++++++  ..++++|++|||++|||+|. ..+.||||++|+|++.++|+||+++.++
T Consensus       112 GG~~~~~i~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~~  172 (213)
T d1ap8a_         112 GGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDK  172 (213)
T ss_dssp             SEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSSCH
T ss_pred             CCEEEEEEccCCCcHHHHHHHHHHHHHhcccccCCCEEeeEEEEecCCceEEEEEccCCch
Confidence            9999999965  46899999999999999995 4557999999999999999999998764

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-48  Score=307.76  Aligned_cols=133  Identities=38%  Similarity=0.846  Sum_probs=123.6

Q ss_pred             CCCCCCCeEEEEEccCCCCCCCccchhhhceeeeeeccHHHHHHhhcCCCCCccccccceEEEEecCCccccccCCCCCC
Q psy10850         34 HHKLQYQYWFWYSRRTPGKVTSVQSYDDNLKLIQKFGSVEQFWEIYTHLVRPNEFQSFIDLHLFKVGVKPMWEDEANRNG  113 (173)
Q Consensus        34 ~hpL~~~Wt~w~~~~~~~k~~~~~~y~~~l~~I~tf~TVE~Fw~~yn~l~~ps~l~~~~~~~lFK~gI~P~WEDp~N~~G  113 (173)
                      .|||+++|||||+..+.     .++|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+|+||||+|++|
T Consensus         1 kHpL~~~Wt~w~~~~~~-----~~~~~~~~~~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~G   75 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDK-----SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRG   75 (182)
T ss_dssp             CCEEEEEEEEEEEECCS-----SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTC
T ss_pred             CCCCCCeEEEEEEeCCC-----CchhhhcceEEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCC
Confidence            59999999999997542     4689999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEec----CCchHHHHHHHHHHHhcCCCC-CCCceeeEEEEeeCCCcEEEEecCCCCCC
Q psy10850        114 GKWLIRLR----KGIASRCWENLILAMLGEQFM-VGDEICGAVISVRFQEDHISVWNKTSSLS  171 (173)
Q Consensus       114 G~~~i~~~----k~~~d~~W~~lll~~IGe~f~-~~~~I~Gvv~s~R~~~~~IsIW~~~~~~~  171 (173)
                      |+|+++++    ++.++++|++||+++|||+|. .+++||||++|+|++.++|+||++++++.
T Consensus        76 G~~~~~i~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~~~  138 (182)
T d1l8ba_          76 GRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENR  138 (182)
T ss_dssp             EEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCH
T ss_pred             CEEEEEECcccccchHHHHHHHHHHHHHhcccccCCCeeccEEEEecCCCcEEEEEeCCCccH
Confidence            99999995    567899999999999999994 46789999999999999999999998764