Psyllid ID: psy10959
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 132 | ||||||
| 4504279 | 136 | histone H3.3 [Homo sapiens] gi|4885385|r | 1.0 | 0.970 | 0.970 | 5e-67 | |
| 334359125 | 139 | Chain A, The Human Nucleosome Structure | 1.0 | 0.949 | 0.970 | 6e-67 | |
| 225703532 | 136 | Histone H3.3 [Oncorhynchus mykiss] | 1.0 | 0.970 | 0.963 | 7e-67 | |
| 256086246 | 136 | histone H3 [Schistosoma mansoni] gi|5675 | 1.0 | 0.970 | 0.963 | 7e-67 | |
| 307204446 | 205 | Histone H3.3 [Harpegnathos saltator] | 1.0 | 0.643 | 0.970 | 8e-67 | |
| 225704818 | 136 | Histone H3.3 [Oncorhynchus mykiss] | 1.0 | 0.970 | 0.963 | 9e-67 | |
| 45384744 | 136 | histone H3.3B [Chinchilla lanigera] | 1.0 | 0.970 | 0.963 | 1e-66 | |
| 221221048 | 136 | Histone H3.3 [Salmo salar] | 1.0 | 0.970 | 0.963 | 1e-66 | |
| 126697402 | 136 | histone H3 [Haliotis discus discus] gi|2 | 1.0 | 0.970 | 0.963 | 1e-66 | |
| 189053462 | 136 | unnamed protein product [Homo sapiens] | 1.0 | 0.970 | 0.963 | 1e-66 |
| >gi|4504279|ref|NP_002098.1| histone H3.3 [Homo sapiens] gi|4885385|ref|NP_005315.1| histone H3.3 [Homo sapiens] gi|6680159|ref|NP_032236.1| histone H3.3 [Mus musculus] gi|6680161|ref|NP_032237.1| histone H3.3 [Mus musculus] gi|16758888|ref|NP_446437.1| histone H3.3 [Rattus norvegicus] gi|17530867|ref|NP_511095.1| histone H3.3B, isoform A [Drosophila melanogaster] gi|17647507|ref|NP_523479.1| histone H3.3A, isoform A [Drosophila melanogaster] gi|24640743|ref|NP_727314.1| histone H3.3B, isoform B [Drosophila melanogaster] gi|28571378|ref|NP_788892.1| histone H3.3B, isoform C [Drosophila melanogaster] gi|41053381|ref|NP_956297.1| H3 histone, family 3C [Danio rerio] gi|41055417|ref|NP_957395.1| H3 histone, family 3D [Danio rerio] gi|45360705|ref|NP_989026.1| histone H3.3 [Xenopus (Silurana) tropicalis] gi|46048708|ref|NP_990627.1| histone H3.3 [Gallus gallus] gi|47522626|ref|NP_999095.1| histone H3.3 [Sus scrofa] gi|52346112|ref|NP_001005101.1| H3 histone, family 3A [Xenopus (Silurana) tropicalis] gi|62177168|ref|NP_001014411.1| histone H3.3 [Bos taurus] gi|62955167|ref|NP_001017599.1| histone H3.3 [Danio rerio] gi|147906226|ref|NP_001080065.1| H3 histone, family 3B (H3.3B) [Xenopus laevis] gi|148231893|ref|NP_001086074.1| histone cluster 2, H3d [Xenopus laevis] gi|148233109|ref|NP_001085048.1| H3 histone, family 3B (H3.3B) [Xenopus laevis] gi|148236021|ref|NP_001079375.1| histone H3.3 [Xenopus laevis] gi|148298806|ref|NP_001091756.1| h3 histone family 3a [Bombyx mori] gi|148539598|ref|NP_001091902.1| H3 histone, family 3A [Xenopus laevis] gi|148727266|ref|NP_001092038.1| histone cluster 1, H3a [Pan troglodytes] gi|281182698|ref|NP_001162389.1| histone H3.1 [Papio anubis] gi|283806664|ref|NP_001164583.1| histone H3.3 [Oryctolagus cuniculus] gi|308818211|ref|NP_001184227.1| H3 histone, family 3A member [Taeniopygia guttata] gi|308818224|ref|NP_001184233.1| H3 histone, family 3A member [Taeniopygia guttata] gi|325197159|ref|NP_001191424.1| histone 3 [Aplysia californica] gi|336020387|ref|NP_001229500.1| H3 histone, family 3B [Bos taurus] gi|442615645|ref|NP_001259374.1| histone H3.3B, isoform D [Drosophila melanogaster] gi|442626113|ref|NP_001260082.1| histone H3.3A, isoform C [Drosophila melanogaster] gi|442626115|ref|NP_723056.2| histone H3.3A, isoform D [Drosophila melanogaster] gi|31241623|ref|XP_321242.1| AGAP001813-PA [Anopheles gambiae str. PEST] gi|57089073|ref|XP_537232.1| PREDICTED: histone H3.3 isoform 1 [Canis lupus familiaris] gi|66565026|ref|XP_624499.1| PREDICTED: histone H3.3-like isoform 2 [Apis mellifera] gi|73964884|ref|XP_858804.1| PREDICTED: histone H3.3 isoform 4 [Canis lupus familiaris] gi|91089509|ref|XP_975889.1| PREDICTED: similar to Histone H3.3B CG8989-PA isoform 2 [Tribolium castaneum] gi|109018064|ref|XP_001091581.1| PREDICTED: histone H3.3-like isoform 1 [Macaca mulatta] gi|109018066|ref|XP_001091695.1| PREDICTED: histone H3.3-like isoform 2 [Macaca mulatta] gi|109018068|ref|XP_001091816.1| PREDICTED: histone H3.3-like isoform 3 [Macaca mulatta] gi|109018072|ref|XP_001092054.1| PREDICTED: histone H3.3-like isoform 5 [Macaca mulatta] gi|109019307|ref|XP_001083683.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|109118262|ref|XP_001099829.1| PREDICTED: histone H3.3-like isoform 1 [Macaca mulatta] gi|109118272|ref|XP_001100109.1| PREDICTED: histone H3.3-like isoform 2 [Macaca mulatta] gi|110765924|ref|XP_001120696.1| PREDICTED: histone H3.3-like isoform 1 [Apis mellifera] gi|125984400|ref|XP_001355964.1| GA19158 [Drosophila pseudoobscura pseudoobscura] gi|126306915|ref|XP_001368225.1| PREDICTED: histone H3.3-like [Monodelphis domestica] gi|126308438|ref|XP_001369359.1| PREDICTED: histone H3.3-like isoform 1 [Monodelphis domestica] gi|126308440|ref|XP_001369390.1| PREDICTED: histone H3.3-like isoform 2 [Monodelphis domestica] gi|149641481|ref|XP_001514538.1| PREDICTED: histone H3.3-like [Ornithorhynchus anatinus] gi|149723295|ref|XP_001495110.1| PREDICTED: histone H3.3-like isoform 1 [Equus caballus] gi|149748720|ref|XP_001489292.1| PREDICTED: histone H3.3-like [Equus caballus] gi|156548619|ref|XP_001608166.1| PREDICTED: histone H3.3-like isoform 2 [Nasonia vitripennis] gi|156548623|ref|XP_001608174.1| PREDICTED: histone H3.3-like [Nasonia vitripennis] gi|157112482|ref|XP_001657554.1| histone H3.3 [Aedes aegypti] gi|170063956|ref|XP_001867328.1| histone H3.3 type 2 [Culex quinquefasciatus] gi|170585288|ref|XP_001897416.1| Histone H3.3 [Brugia malayi] gi|170589399|ref|XP_001899461.1| Histone H3.3 [Brugia malayi] gi|193688275|ref|XP_001949472.1| PREDICTED: histone H3.3-like [Acyrthosiphon pisum] gi|194761556|ref|XP_001962995.1| GF15720 [Drosophila ananassae] gi|194769246|ref|XP_001966717.1| GF19171 [Drosophila ananassae] gi|194856509|ref|XP_001968765.1| GG25048 [Drosophila erecta] gi|194890669|ref|XP_001977366.1| GG19000 [Drosophila erecta] gi|195035003|ref|XP_001989021.1| GH11489 [Drosophila grimshawi] gi|195047686|ref|XP_001992391.1| GH24723 [Drosophila grimshawi] gi|195114260|ref|XP_002001685.1| GI16984 [Drosophila mojavensis] gi|195131317|ref|XP_002010097.1| GI14879 [Drosophila mojavensis] gi|195161310|ref|XP_002021511.1| GL26550 [Drosophila persimilis] gi|195168426|ref|XP_002025032.1| GL26831 [Drosophila persimilis] gi|195342652|ref|XP_002037914.1| GM18523 [Drosophila sechellia] gi|195355011|ref|XP_002043987.1| GM13676 [Drosophila sechellia] gi|195386334|ref|XP_002051859.1| GJ17231 [Drosophila virilis] gi|195400691|ref|XP_002058949.1| GJ15308 [Drosophila virilis] gi|195432994|ref|XP_002064500.1| GK23881 [Drosophila willistoni] gi|195447814|ref|XP_002071382.1| GK25162 [Drosophila willistoni] gi|195472777|ref|XP_002088675.1| His3.3A [Drosophila yakuba] gi|195479904|ref|XP_002101068.1| GE17412 [Drosophila yakuba] gi|195576680|ref|XP_002078203.1| GD23319 [Drosophila simulans] gi|198414843|ref|XP_002119783.1| PREDICTED: similar to Histone H3.3B CG8989-PA [Ciona intestinalis] gi|198469150|ref|XP_002134231.1| GA22698 [Drosophila pseudoobscura pseudoobscura] gi|241112266|ref|XP_002399568.1| Core histone H2A/H2B/H3/H4 [Ixodes scapularis] gi|242020435|ref|XP_002430660.1| histone H3.3 [Pediculus humanus corporis] gi|260788404|ref|XP_002589240.1| hypothetical protein BRAFLDRAFT_120760 [Branchiostoma floridae] gi|260801479|ref|XP_002595623.1| hypothetical protein BRAFLDRAFT_117519 [Branchiostoma floridae] gi|291224914|ref|XP_002732446.1| PREDICTED: histone H3.3B-like isoform 1 [Saccoglossus kowalevskii] gi|291224916|ref|XP_002732447.1| PREDICTED: histone H3.3B-like isoform 2 [Saccoglossus kowalevskii] gi|291225982|ref|XP_002732967.1| PREDICTED: histone H3.3B-like [Saccoglossus kowalevskii] gi|291402310|ref|XP_002717527.1| PREDICTED: H3 histone, family 3A [Oryctolagus cuniculus] gi|292621873|ref|XP_002664801.1| PREDICTED: histone H3.3-like isoform 2 [Danio rerio] gi|293352901|ref|XP_002728089.1| PREDICTED: histone H3.3-like [Rattus norvegicus] gi|296196732|ref|XP_002745967.1| PREDICTED: histone H3.3-like isoform 2 [Callithrix jacchus] gi|296203207|ref|XP_002748789.1| PREDICTED: histone H3.3-like isoform 1 [Callithrix jacchus] gi|296214908|ref|XP_002753910.1| PREDICTED: histone H3.3-like isoform 2 [Callithrix jacchus] gi|296228940|ref|XP_002760051.1| PREDICTED: histone H3.3-like isoform 1 [Callithrix jacchus] gi|296230284|ref|XP_002760633.1| PREDICTED: histone H3.3-like isoform 2 [Callithrix jacchus] gi|296230286|ref|XP_002760634.1| PREDICTED: histone H3.3-like isoform 3 [Callithrix jacchus] gi|297273629|ref|XP_002800646.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|297273631|ref|XP_002800647.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|297280664|ref|XP_002801958.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|297280666|ref|XP_002801959.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|297281559|ref|XP_002802116.1| PREDICTED: histone H3.3-like isoform 2 [Macaca mulatta] gi|297661840|ref|XP_002809431.1| PREDICTED: histone H3.3-like isoform 1 [Pongo abelii] gi|297661844|ref|XP_002809433.1| PREDICTED: histone H3.3-like isoform 3 [Pongo abelii] gi|297661848|ref|XP_002809435.1| PREDICTED: histone H3.3-like isoform 5 [Pongo abelii] gi|297661850|ref|XP_002809436.1| PREDICTED: histone H3.3-like isoform 6 [Pongo abelii] gi|301621375|ref|XP_002940033.1| PREDICTED: histone H3.3 [Xenopus (Silurana) tropicalis] gi|301768993|ref|XP_002919897.1| PREDICTED: histone H3.3-like [Ailuropoda melanoleuca] gi|301782657|ref|XP_002926741.1| PREDICTED: histone H3.3-like [Ailuropoda melanoleuca] gi|311266778|ref|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa] gi|312076177|ref|XP_003140744.1| H3 histone, family 3A [Loa loa] gi|312101016|ref|XP_003149523.1| histone H3 [Loa loa] gi|326930728|ref|XP_003211494.1| PREDICTED: histone H3.3-like [Meleagris gallopavo] gi|327262611|ref|XP_003216117.1| PREDICTED: histone H3.3-like [Anolis carolinensis] gi|327264913|ref|XP_003217253.1| PREDICTED: histone H3.3-like [Anolis carolinensis] gi|327276295|ref|XP_003222905.1| PREDICTED: histone H3.3-like [Anolis carolinensis] gi|328726781|ref|XP_003249043.1| PREDICTED: histone H3.3-like [Acyrthosiphon pisum] gi|328782845|ref|XP_003250201.1| PREDICTED: histone H3.3-like isoform 1 [Apis mellifera] gi|328782848|ref|XP_003250202.1| PREDICTED: histone H3.3-like isoform 2 [Apis mellifera] gi|332228487|ref|XP_003263420.1| PREDICTED: histone H3.3-like isoform 1 [Nomascus leucogenys] gi|332251999|ref|XP_003275139.1| PREDICTED: histone H3.3 isoform 1 [Nomascus leucogenys] gi|332252001|ref|XP_003275140.1| PREDICTED: histone H3.3 isoform 2 [Nomascus leucogenys] gi|332252007|ref|XP_003275143.1| PREDICTED: histone H3.3 isoform 5 [Nomascus leucogenys] gi|332252009|ref|XP_003275144.1| PREDICTED: histone H3.3 isoform 6 [Nomascus leucogenys] gi|332252011|ref|XP_003275145.1| PREDICTED: histone H3.3 isoform 7 [Nomascus leucogenys] gi|332260129|ref|XP_003279138.1| PREDICTED: histone H3.3 isoform 3 [Nomascus leucogenys] gi|332812065|ref|XP_003308826.1| PREDICTED: histone H3.3 isoform 1 [Pan troglodytes] gi|332812069|ref|XP_003339055.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|332812071|ref|XP_003308828.1| PREDICTED: histone H3.3 isoform 3 [Pan troglodytes] gi|332812073|ref|XP_003308830.1| PREDICTED: histone H3.3 isoform 5 [Pan troglodytes] gi|332812077|ref|XP_003339057.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|332849085|ref|XP_003315784.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|340376747|ref|XP_003386893.1| PREDICTED: histone H3.3-like [Amphimedon queenslandica] gi|340724796|ref|XP_003400767.1| PREDICTED: histone H3.3-like [Bombus terrestris] gi|340724804|ref|XP_003400771.1| PREDICTED: histone H3.3 isoform 1 [Bombus terrestris] gi|340724806|ref|XP_003400772.1| PREDICTED: histone H3.3 isoform 2 [Bombus terrestris] gi|340724808|ref|XP_003400773.1| PREDICTED: histone H3.3 isoform 3 [Bombus terrestris] gi|340724810|ref|XP_003400774.1| PREDICTED: histone H3.3 isoform 4 [Bombus terrestris] gi|340724812|ref|XP_003400775.1| PREDICTED: histone H3.3 isoform 5 [Bombus terrestris] gi|340724814|ref|XP_003400776.1| PREDICTED: histone H3.3 isoform 6 [Bombus terrestris] gi|344278391|ref|XP_003410978.1| PREDICTED: histone H3.3-like [Loxodonta africana] gi|344291160|ref|XP_003417304.1| PREDICTED: histone H3.3-like [Loxodonta africana] gi|347966658|ref|XP_003435952.1| AGAP001813-PB [Anopheles gambiae str. PEST] gi|348502319|ref|XP_003438715.1| PREDICTED: histone H3.3-like [Oreochromis niloticus] gi|348502535|ref|XP_003438823.1| PREDICTED: histone H3.3-like [Oreochromis niloticus] gi|348524667|ref|XP_003449844.1| PREDICTED: histone H3.3-like [Oreochromis niloticus] gi|348551304|ref|XP_003461470.1| PREDICTED: histone H3.3-like [Cavia porcellus] gi|348553198|ref|XP_003462414.1| PREDICTED: histone H3.3-like [Cavia porcellus] gi|350398298|ref|XP_003485151.1| PREDICTED: histone H3.3-like [Bombus impatiens] gi|350398312|ref|XP_003485156.1| PREDICTED: histone H3.3-like isoform 1 [Bombus impatiens] gi|350398315|ref|XP_003485157.1| PREDICTED: histone H3.3-like isoform 2 [Bombus impatiens] gi|363746092|ref|XP_003643522.1| PREDICTED: histone H3.3-like [Gallus gallus] gi|380021168|ref|XP_003694444.1| PREDICTED: histone H3.3-like isoform 1 [Apis florea] gi|380021170|ref|XP_003694445.1| PREDICTED: histone H3.3-like isoform 2 [Apis florea] gi|380021172|ref|XP_003694446.1| PREDICTED: histone H3.3-like isoform 1 [Apis florea] gi|380021174|ref|XP_003694447.1| PREDICTED: histone H3.3-like isoform 2 [Apis florea] gi|380021176|ref|XP_003694448.1| PREDICTED: histone H3.3-like isoform 3 [Apis florea] gi|383865267|ref|XP_003708096.1| PREDICTED: histone H3.3-like [Megachile rotundata] gi|383865269|ref|XP_003708097.1| PREDICTED: histone H3.3-like [Megachile rotundata] gi|391329086|ref|XP_003739008.1| PREDICTED: histone H3.3-like [Metaseiulus occidentalis] gi|391348271|ref|XP_003748371.1| PREDICTED: histone H3.3-like [Metaseiulus occidentalis] gi|392332906|ref|XP_003752732.1| PREDICTED: histone H3.3-like [Rattus norvegicus] gi|395531470|ref|XP_003767801.1| PREDICTED: histone H3.3-like [Sarcophilus harrisii] gi|395728954|ref|XP_003775464.1| PREDICTED: histone H3.3-like [Pongo abelii] gi|395825930|ref|XP_003786173.1| PREDICTED: histone H3.3-like [Otolemur garnettii] gi|395836179|ref|XP_003791041.1| PREDICTED: histone H3.3-like [Otolemur garnettii] gi|397484318|ref|XP_003813324.1| PREDICTED: histone H3.3-like isoform 1 [Pan paniscus] gi|397484320|ref|XP_003813325.1| PREDICTED: histone H3.3-like isoform 2 [Pan paniscus] gi|397487800|ref|XP_003814967.1| PREDICTED: histone H3.3-like isoform 1 [Pan paniscus] gi|397487802|ref|XP_003814968.1| PREDICTED: histone H3.3-like isoform 2 [Pan paniscus] gi|397487804|ref|XP_003814969.1| PREDICTED: histone H3.3-like isoform 3 [Pan paniscus] gi|397487806|ref|XP_003814970.1| PREDICTED: histone H3.3-like isoform 4 [Pan paniscus] gi|397487808|ref|XP_003814971.1| PREDICTED: histone H3.3-like isoform 5 [Pan paniscus] gi|397487810|ref|XP_003814972.1| PREDICTED: histone H3.3-like isoform 6 [Pan paniscus] gi|402857049|ref|XP_003893086.1| PREDICTED: histone H3.3 [Papio anubis] gi|402858020|ref|XP_003893529.1| PREDICTED: histone H3.3-like isoform 1 [Papio anubis] gi|402858022|ref|XP_003893530.1| PREDICTED: histone H3.3-like isoform 2 [Papio anubis] gi|402858024|ref|XP_003893531.1| PREDICTED: histone H3.3-like isoform 3 [Papio anubis] gi|402858026|ref|XP_003893532.1| PREDICTED: histone H3.3-like isoform 4 [Papio anubis] gi|402901097|ref|XP_003913493.1| PREDICTED: histone H3.3 isoform 1 [Papio anubis] gi|402901099|ref|XP_003913494.1| PREDICTED: histone H3.3 isoform 2 [Papio anubis] gi|403277380|ref|XP_003930341.1| PREDICTED: histone H3.3 isoform 1 [Saimiri boliviensis boliviensis] gi|403277382|ref|XP_003930342.1| PREDICTED: histone H3.3 isoform 2 [Saimiri boliviensis boliviensis] gi|403277384|ref|XP_003930343.1| PREDICTED: histone H3.3 isoform 3 [Saimiri boliviensis boliviensis] gi|403280542|ref|XP_003931776.1| PREDICTED: histone H3.3 [Saimiri boliviensis boliviensis] gi|410034519|ref|XP_003949752.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|410034521|ref|XP_003949753.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|410895731|ref|XP_003961353.1| PREDICTED: histone H3.3-like [Takifugu rubripes] gi|410914598|ref|XP_003970774.1| PREDICTED: histone H3.3-like [Takifugu rubripes] gi|410928060|ref|XP_003977419.1| PREDICTED: histone H3.3-like [Takifugu rubripes] gi|410981710|ref|XP_003997209.1| PREDICTED: histone H3.3 [Felis catus] gi|410985661|ref|XP_003999137.1| PREDICTED: histone H3.3 [Felis catus] gi|426238462|ref|XP_004013172.1| PREDICTED: histone H3.3 [Ovis aries] gi|426239547|ref|XP_004013682.1| PREDICTED: histone H3.3 [Ovis aries] gi|426333961|ref|XP_004028534.1| PREDICTED: histone H3.3 isoform 1 [Gorilla gorilla gorilla] gi|426333963|ref|XP_004028535.1| PREDICTED: histone H3.3 isoform 2 [Gorilla gorilla gorilla] gi|426333965|ref|XP_004028536.1| PREDICTED: histone H3.3 isoform 3 [Gorilla gorilla gorilla] gi|426333967|ref|XP_004028537.1| PREDICTED: histone H3.3 isoform 4 [Gorilla gorilla gorilla] gi|426333969|ref|XP_004028538.1| PREDICTED: histone H3.3 isoform 5 [Gorilla gorilla gorilla] gi|426333971|ref|XP_004028539.1| PREDICTED: histone H3.3 isoform 6 [Gorilla gorilla gorilla] gi|426333973|ref|XP_004028540.1| PREDICTED: histone H3.3 isoform 7 [Gorilla gorilla gorilla] gi|426333975|ref|XP_004028541.1| PREDICTED: histone H3.3 isoform 8 [Gorilla gorilla gorilla] gi|426346816|ref|XP_004041067.1| PREDICTED: histone H3.3 [Gorilla gorilla gorilla] gi|432923025|ref|XP_004080398.1| PREDICTED: histone H3.3-like [Oryzias latipes] gi|432948638|ref|XP_004084106.1| PREDICTED: histone H3.3-like [Oryzias latipes] gi|441612528|ref|XP_004088086.1| PREDICTED: histone H3.3 [Nomascus leucogenys] gi|441622394|ref|XP_004088836.1| PREDICTED: histone H3.3-like isoform 2 [Nomascus leucogenys] gi|441622397|ref|XP_004088837.1| PREDICTED: histone H3.3-like isoform 3 [Nomascus leucogenys] gi|55977042|sp|P84245.2|H33_RAT RecName: Full=Histone H3.3 gi|55977062|sp|P84243.2|H33_HUMAN RecName: Full=Histone H3.3 gi|55977063|sp|P84244.2|H33_MOUSE RecName: Full=Histone H3.3 gi|55977064|sp|P84246.2|H33_RABIT RecName: Full=Histone H3.3 gi|55977065|sp|P84247.2|H33_CHICK RecName: Full=Histone H3.3; AltName: Full=H3.3A/B; AltName: Full=Histone H3 class II gi|55977066|sp|P84248.2|H33_SPISO RecName: Full=Histone H3.3 gi|55977067|sp|P84249.2|H33_DROME RecName: Full=Histone H3.3; AltName: Full=H3.3Q; AltName: Full=H3.A/B gi|55977068|sp|P84250.2|H33_DROHY RecName: Full=Histone H3.3; AltName: Full=H3.A/B gi|56404321|sp|Q71LE2.3|H33_PIG RecName: Full=Histone H3.3 gi|75040237|sp|Q5E9F8.3|H33_BOVIN RecName: Full=Histone H3.3 gi|82237558|sp|Q6P823.3|H33_XENTR RecName: Full=Histone H3.3 gi|82237785|sp|Q6PI20.3|H33_DANRE RecName: Full=Histone H3.3 gi|82237787|sp|Q6PI79.3|H33_XENLA RecName: Full=Histone H3.3 gi|411024500|pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In Complex With Its Chaperone Daxx gi|10441988|gb|AAG17271.1|AF218029_1 unknown [Homo sapiens] gi|18643343|gb|AAL76273.1|AF469469_1 histone H3.3A [Sus scrofa] gi|1568|emb|CAA36179.1| unnamed protein product [Oryctolagus cuniculus] gi|8046|emb|CAA37819.1| Histone H3.3Q [Drosophila melanogaster] gi|51198|emb|CAA31940.1| unnamed protein product [Mus musculus] gi|63480|emb|CAA68458.1| unnamed protein product [Gallus gallus] gi|161190|gb|AAA29965.1| histone H3 [Spisula solidissima] gi|211853|gb|AAA48794.1| histone 3.3 [Gallus gallus] gi|306848|gb|AAA52653.1| H3.3 histone [Homo sapiens] gi|306849|gb|AAA52654.1| H3.3 histone [Homo sapiens] gi|313319|emb|CAA52035.1| histon H3 [Rattus norvegicus] gi|761716|emb|CAA88778.1| histone H3.3 [Homo sapiens] gi|963024|emb|CAA57078.1| histone H3.3 [Drosophila hydei] gi|963026|emb|CAA57081.1| histone H3.3 [Drosophila hydei] gi|963029|emb|CAA57080.1| histone H3.3 [Drosophila melanogaster] gi|963031|emb|CAA57077.1| histone H3.3 [Drosophila melanogaster] gi|1006654|emb|CAA57712.1| histone H3.3A variant [Drosophila melanogaster] gi|1838986|emb|CAB06625.1| histone H3.3A [Mus musculus] gi|7291014|gb|AAF46452.1| histone H3.3B, isoform A [Drosophila melanogaster] gi|7296940|gb|AAF52213.1| histone H3.3A, isoform A [Drosophila melanogaster] gi|12654577|gb|AAH01124.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|12805577|gb|AAH02268.1| H3 histone, family 3A [Mus musculus] gi|12833274|dbj|BAB22464.1| unnamed protein product [Mus musculus] gi|13676330|gb|AAH06497.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|15215164|gb|AAH12687.1| H3 histone, family 3A [Mus musculus] gi|15215436|gb|AAH12813.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|16580107|gb|AAK61362.1| histone 3A [Anopheles gambiae] gi|17028475|gb|AAH17558.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|17945243|gb|AAL48679.1| RE14004p [Drosophila melanogaster] gi|20810210|gb|AAH29405.1| H3 histone, family 3A [Homo sapiens] gi|21392000|gb|AAM48354.1| LD17717p [Drosophila melanogaster] gi|21429128|gb|AAM50283.1| RE21618p [Drosophila melanogaster] gi|22831984|gb|AAN09245.1| histone H3.3B, isoform B [Drosophila melanogaster] gi|22902309|gb|AAH37730.1| H3 histone, family 3B [Mus musculus] gi|25058578|gb|AAH38989.1| H3 histone, family 3A [Homo sapiens] gi|26332330|dbj|BAC29895.1| unnamed protein product [Mus musculus] gi|26353000|dbj|BAC40130.1| unnamed protein product [Mus musculus] gi|27370860|gb|AAH41218.1| MGC52708 protein [Xenopus laevis] gi|27503244|gb|AAH42290.1| H3f3b-prov protein [Xenopus laevis] gi|27769186|gb|AAH42309.1| H3f3a-prov protein [Xenopus laevis] gi|28381593|gb|AAO41645.1| histone H3.3B, isoform C [Drosophila melanogaster] gi|29124583|gb|AAH49017.1| Zgc:56418 [Danio rerio] gi|30173649|gb|EAA01174.2| AGAP001813-PA [Anopheles gambiae str. PEST] gi|31873260|emb|CAD97621.1| hypothetical protein [Homo sapiens] gi|34783839|gb|AAH57444.1| H3 histone, family 3C [Danio rerio] gi|38047789|gb|AAR09797.1| similar to Drosophila melanogaster His3.3A, partial [Drosophila yakuba] gi|38174124|gb|AAH61408.1| H3 histone, family 3B (H3.3B) [Xenopus (Silurana) tropicalis] gi|38648851|gb|AAH63159.1| H3 histone, family 3B [Rattus norvegicus] gi|47215774|emb|CAG02570.1| unnamed protein product [Tetraodon nigroviridis] gi|47216831|emb|CAG02722.1| unnamed protein product [Tetraodon nigroviridis] gi|47224861|emb|CAG06431.1| unnamed protein product [Tetraodon nigroviridis] gi|47506869|gb|AAH70966.1| MGC78769 protein [Xenopus laevis] gi|48290305|emb|CAF25046.1| histone H3.3 [Oikopleura dioica] gi|48734917|gb|AAH71406.1| H3 histone, family 3A [Danio rerio] gi|49522764|gb|AAH74158.1| MGC81913 protein [Xenopus laevis] gi|49903578|gb|AAH77035.1| MGC89877 protein [Xenopus (Silurana) tropicalis] gi|50926784|gb|AAH78759.1| H3 histone, family 3B [Rattus norvegicus] gi|51814315|gb|AAU09479.1| GekBS038P [Gekko japonicus] gi|51858469|gb|AAH81560.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|53734121|gb|AAH83353.1| H3 histone, family 3A [Mus musculus] gi|54644282|gb|EAL33023.1| GA19158 [Drosophila pseudoobscura pseudoobscura] gi|55778406|gb|AAH86580.1| H3f3b protein [Rattus norvegicus] gi|56388767|gb|AAH87725.1| H3f3b protein [Rattus norvegicus] gi|57033178|gb|AAH88835.1| H3 histone, family 3A [Mus musculus] gi|59858289|gb|AAX08979.1| H3 histone, family 3A [Bos taurus] gi|60392147|gb|AAX19363.1| replacement histone H3.3 [Ruditapes philippinarum] gi|62027558|gb|AAH92043.1| H3 histone, family 3B [Mus musculus] gi|62202237|gb|AAH92854.1| Zgc:110292 [Danio rerio] gi|63102453|gb|AAH95447.1| H3 histone, family 3A [Homo sapiens] gi|73586640|gb|AAI03072.1| H3F3A protein [Bos taurus] gi|74139378|dbj|BAE40831.1| unnamed protein product [Mus musculus] gi|74139993|dbj|BAE31831.1| unnamed protein product [Mus musculus] gi|74141311|dbj|BAE35953.1| unnamed protein product [Mus musculus] gi|74141850|dbj|BAE40995.1| unnamed protein product [Mus musculus] gi|74142224|dbj|BAE31877.1| unnamed protein product [Mus musculus] gi|74142363|dbj|BAE31939.1| unnamed protein product [Mus musculus] gi|74151792|dbj|BAE29685.1| unnamed protein product [Mus musculus] gi|74152073|dbj|BAE32069.1| unnamed protein product [Mus musculus] gi|74179935|dbj|BAE36524.1| unnamed protein product [Mus musculus] gi|74181381|dbj|BAE29966.1| unnamed protein product [Mus musculus] gi|74187463|dbj|BAE36694.1| unnamed protein product [Mus musculus] gi|74189303|dbj|BAE22687.1| unnamed protein product [Mus musculus] gi|74190333|dbj|BAE37253.1| unnamed protein product [Mus musculus] gi|74191357|dbj|BAE30261.1| unnamed protein product [Mus musculus] gi|74191472|dbj|BAE30314.1| unnamed protein product [Mus musculus] gi|74196024|dbj|BAE30566.1| unnamed protein product [Mus musculus] gi|74196068|dbj|BAE30586.1| unnamed protein product [Mus musculus] gi|74196074|dbj|BAE30589.1| unnamed protein product [Mus musculus] gi|74198107|dbj|BAE35232.1| unnamed protein product [Mus musculus] gi|74204175|dbj|BAE39850.1| unnamed protein product [Mus musculus] gi|74204268|dbj|BAE39892.1| unnamed protein product [Mus musculus] gi|74204718|dbj|BAE35427.1| unnamed protein product [Mus musculus] gi|74207125|dbj|BAE30757.1| unnamed protein product [Mus musculus] gi|74211975|dbj|BAE40157.1| unnamed protein product [Mus musculus] gi|74214504|dbj|BAE31102.1| unnamed protein product [Mus musculus] gi|74214793|dbj|BAE31231.1| unnamed protein product [Mus musculus] gi|74214797|dbj|BAE31233.1| unnamed protein product [Mus musculus] gi|74219633|dbj|BAE29584.1| unnamed protein product [Mus musculus] gi|74219635|dbj|BAE29585.1| unnamed protein product [Mus musculus] gi|74219922|dbj|BAE40542.1| unnamed protein product [Mus musculus] gi|74220794|dbj|BAE31366.1| unnamed protein product [Mus musculus] gi|74225316|dbj|BAE31590.1| unnamed protein product [Mus musculus] gi|74225515|dbj|BAE31666.1| unnamed protein product [Mus musculus] gi|76780124|gb|AAI06303.1| MGC52708 protein [Xenopus laevis] gi|76780245|gb|AAI06178.1| H3 histone, family 3A [Mus musculus] gi|80477731|gb|AAI08702.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|87248155|gb|ABD36130.1| h3 histone family 3a [Bombyx mori] gi|90819998|gb|ABD98756.1| putative H3 histone, family 3A [Graphocephala atropunctata] gi|95769331|gb|ABF57428.1| H3 histone, family 3B [Bos taurus] gi|108878058|gb|EAT42283.1| AAEL006158-PA [Aedes aegypti] gi|109716251|gb|ABG43104.1| histone H3 [Pectinaria gouldii] gi|115530764|emb|CAL49400.1| H3 histone [Xenopus (Silurana) tropicalis] gi|116063361|gb|AAI23121.1| MGC52708 protein [Xenopus laevis] gi|117645208|emb|CAL38070.1| hypothetical protein [synthetic construct] gi|119590176|gb|EAW69770.1| H3 histone, family 3A, isoform CRA_a [Homo sapiens] gi|119590177|gb|EAW69771.1| H3 histone, family 3A, isoform CRA_a [Homo sapiens] gi|119590178|gb|EAW69772.1| H3 histone, family 3A, isoform CRA_a [Homo sapiens] gi|119590179|gb|EAW69773.1| H3 histone, family 3A, isoform CRA_a [Homo sapiens] gi|119609723|gb|EAW89317.1| H3 histone, family 3B (H3.3B), isoform CRA_a [Homo sapiens] gi|119609724|gb|EAW89318.1| H3 histone, family 3B (H3.3B), isoform CRA_a [Homo sapiens] gi|119609725|gb|EAW89319.1| H3 histone, family 3B (H3.3B), isoform CRA_a [Homo sapiens] gi|121543839|gb|ABM55584.1| putative histone H3 [Maconellicoccus hirsutus] gi|121543855|gb|ABM55592.1| putative H3 histone, family 3B [Maconellicoccus hirsutus] gi|123984391|gb|ABM83541.1| H3 histone, family 3A [synthetic construct] gi|123998359|gb|ABM86781.1| H3 histone, family 3A [synthetic construct] gi|126635091|emb|CAK32534.1| histone H3.3 [Oikopleura dioica] gi|134025948|gb|AAI34735.1| H3 histone, family 3A [Bos taurus] gi|146741398|dbj|BAF62355.1| H3 histone, family 3A [Pan troglodytes verus] gi|148681198|gb|EDL13145.1| mCG19829 [Mus musculus] gi|148702598|gb|EDL34545.1| mCG6618 [Mus musculus] gi|149040876|gb|EDL94833.1| rCG20294, isoform CRA_a [Rattus norvegicus] gi|149054820|gb|EDM06637.1| H3 histone, family 3B, isoform CRA_a [Rattus norvegicus] gi|149212750|gb|ABR22618.1| histone 3 [Aplysia californica] gi|149689030|gb|ABR27830.1| H3 histone family 3B [Triatoma infestans] gi|156229982|gb|AAI52135.1| Zgc:64222 protein [Danio rerio] gi|158253878|gb|AAI54270.1| Zgc:56418 protein [Danio rerio] gi|158593674|gb|EDP32269.1| Histone H3.3, putative [Brugia malayi] gi|158595095|gb|EDP33668.1| Histone H3.3, putative [Brugia malayi] gi|160774424|gb|AAI55446.1| h3f3b protein [Xenopus (Silurana) tropicalis] gi|162415918|gb|ABX89280.1| histone cluster 1, H3a (predicted) [Papio anubis] gi|163915477|gb|AAI57317.1| MGC89877 protein [Xenopus (Silurana) tropicalis] gi|163916070|gb|AAI57315.1| h3f3b protein [Xenopus (Silurana) tropicalis] gi|165971617|gb|AAI58616.1| H3f3b protein [Rattus norvegicus] gi|166797097|gb|AAI59440.1| H3f3b protein [Rattus norvegicus] gi|167774103|gb|ABZ92486.1| H3 histone, family 3B (H3.3B) [synthetic construct] gi|167881403|gb|EDS44786.1| histone H3.3 type 2 [Culex quinquefasciatus] gi|182889676|gb|AAI65500.1| H3f3c protein [Danio rerio] gi|189053224|dbj|BAG34846.1| unnamed protein product [Homo sapiens] gi|190616692|gb|EDV32216.1| GF15720 [Drosophila ananassae] gi|190618238|gb|EDV33762.1| GF19171 [Drosophila ananassae] gi|190649015|gb|EDV46293.1| GG19000 [Drosophila erecta] gi|190660632|gb|EDV57824.1| GG25048 [Drosophila erecta] gi|193893232|gb|EDV92098.1| GH24723 [Drosophila grimshawi] gi|193905021|gb|EDW03888.1| GH11489 [Drosophila grimshawi] gi|193908547|gb|EDW07414.1| GI14879 [Drosophila mojavensis] gi|193912260|gb|EDW11127.1| GI16984 [Drosophila mojavensis] gi|194103311|gb|EDW25354.1| GL26550 [Drosophila persimilis] gi|194108477|gb|EDW30520.1| GL26831 [Drosophila persimilis] gi|194129232|gb|EDW51275.1| GM13676 [Drosophila sechellia] gi|194132764|gb|EDW54332.1| GM18523 [Drosophila sechellia] gi|194141601|gb|EDW58018.1| GJ15308 [Drosophila virilis] gi|194148316|gb|EDW64014.1| GJ17231 [Drosophila virilis] gi|194160585|gb|EDW75486.1| GK23881 [Drosophila willistoni] gi|194167467|gb|EDW82368.1| GK25162 [Drosophila willistoni] gi|194174776|gb|EDW88387.1| His3.3A [Drosophila yakuba] gi|194188592|gb|EDX02176.1| GE17412 [Drosophila yakuba] gi|194190212|gb|EDX03788.1| GD23319 [Drosophila simulans] gi|197127820|gb|ACH44318.1| putative H3 histone family 3A [Taeniopygia guttata] gi|197127821|gb|ACH44319.1| putative H3 histone family 3A [Taeniopygia guttata] gi|197129762|gb|ACH46260.1| putative H3 histone family 3B variant 2 [Taeniopygia guttata] gi|197129763|gb|ACH46261.1| putative H3 histone family 3B variant 2 [Taeniopygia guttata] gi|197129765|gb|ACH46263.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129766|gb|ACH46264.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129767|gb|ACH46265.1| putative H3 histone family 3B variant 2 [Taeniopygia guttata] gi|197129768|gb|ACH46266.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129769|gb|ACH46267.1| putative H3 histone family 3B variant 2 [Taeniopygia guttata] gi|197129770|gb|ACH46268.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129771|gb|ACH46269.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129772|gb|ACH46270.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129840|gb|ACH46338.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129877|gb|ACH46375.1| putative H3 histone family 3A [Taeniopygia guttata] gi|197632043|gb|ACH70745.1| H3 histone family 3A [Salmo salar] gi|198146737|gb|EDY72858.1| GA22698 [Drosophila pseudoobscura pseudoobscura] gi|208966478|dbj|BAG73253.1| Histone H3.3 [synthetic construct] gi|209151288|gb|ACI33069.1| Histone H3.3 [Salmo salar] gi|209155450|gb|ACI33957.1| Histone H3.3 [Salmo salar] gi|209155988|gb|ACI34226.1| Histone H3.3 [Salmo salar] gi|209732440|gb|ACI67089.1| Histone H3.3 [Salmo salar] gi|209733828|gb|ACI67783.1| Histone H3.3 [Salmo salar] gi|209735012|gb|ACI68375.1| Histone H3.3 [Salmo salar] gi|209736882|gb|ACI69310.1| Histone H3.3 [Salmo salar] gi|209738400|gb|ACI70069.1| Histone H3.3 [Salmo salar] gi|212515835|gb|EEB17922.1| histone H3.3 [Pediculus humanus corporis] gi|215493015|gb|EEC02656.1| Core histone H2A/H2B/H3/H4 [Ixodes scapularis] gi|220950434|gb|ACL87760.1| His3.3A-PA [synthetic construct] gi|220959296|gb|ACL92191.1| His3.3A-PA [synthetic construct] gi|220959794|gb|ACL92440.1| His3.3A-PA [synthetic construct] gi|221219278|gb|ACM08300.1| Histone H3.3 [Salmo salar] gi|221220000|gb|ACM08661.1| Histone H3.3 [Salmo salar] gi|221220612|gb|ACM08967.1| Histone H3.3 [Salmo salar] gi|221221382|gb|ACM09352.1| Histone H3.3 [Salmo salar] gi|221222238|gb|ACM09780.1| Histone H3.3 [Salmo salar] gi|223646890|gb|ACN10203.1| Histone H3.3 [Salmo salar] gi|223646976|gb|ACN10246.1| Histone H3.3 [Salmo salar] gi|223672751|gb|ACN12557.1| Histone H3.3 [Salmo salar] gi|223672839|gb|ACN12601.1| Histone H3.3 [Salmo salar] gi|224924434|gb|ACN69167.1| H3 histone family 3A [Stomoxys calcitrans] gi|225703498|gb|ACO07595.1| Histone H3.3 [Oncorhynchus mykiss] gi|225706860|gb|ACO09276.1| Histone H3.3 [Osmerus mordax] gi|225706870|gb|ACO09281.1| Histone H3.3 [Osmerus mordax] gi|225713870|gb|ACO12781.1| Histone H3.3 [Lepeophtheirus salmonis] gi|225713976|gb|ACO12834.1| Histone H3.3 [Lepeophtheirus salmonis] gi|225718188|gb|ACO14940.1| Histone H3.3 [Caligus clemensi] gi|225718784|gb|ACO15238.1| Histone H3.3 [Caligus clemensi] gi|225719256|gb|ACO15474.1| Histone H3.3 [Caligus clemensi] gi|229274415|gb|EEN45251.1| hypothetical protein BRAFLDRAFT_120760 [Branchiostoma floridae] gi|229280870|gb|EEN51635.1| hypothetical protein BRAFLDRAFT_117519 [Branchiostoma floridae] gi|229367186|gb|ACQ58573.1| Histone H3.3 [Anoplopoma fimbria] gi|261335966|emb|CBH09251.1| putative Histone H3 [Heliconius melpomene] gi|261860160|dbj|BAI46602.1| H3 histone, family 3A [synthetic construct] gi|270011381|gb|EFA07829.1| hypothetical protein TcasGA2_TC005398 [Tribolium castaneum] gi|281350042|gb|EFB25626.1| hypothetical protein PANDA_008580 [Ailuropoda melanoleuca] gi|281354067|gb|EFB29651.1| hypothetical protein PANDA_016437 [Ailuropoda melanoleuca] gi|283468930|emb|CAP53904.1| histone H3.3 [Xenoturbella bocki] gi|283468934|emb|CAP57915.1| histone H3.3 [Xenoturbella bocki] gi|289743147|gb|ADD20321.1| H3 histone family 3A [Glossina morsitans morsitans] gi|289743149|gb|ADD20322.1| H3 histone family 3A [Glossina morsitans morsitans] gi|289743155|gb|ADD20325.1| H3 histone family 3A [Glossina morsitans morsitans] gi|290562447|gb|ADD38620.1| Histone H3.3 [Lepeophtheirus salmonis] gi|290562748|gb|ADD38769.1| Histone H3.3 [Lepeophtheirus salmonis] gi|291461559|dbj|BAI83414.1| histone H3 [Parasteatoda tepidariorum] gi|296476022|tpg|DAA18137.1| TPA: histone H3.3B-like [Bos taurus] gi|296479254|tpg|DAA21369.1| TPA: histone H3.3 [Bos taurus] gi|303659907|gb|ADM15975.1| Histone H3.3 [Salmo salar] gi|303665913|gb|ADM16206.1| Histone H3.3 [Salmo salar] gi|307095090|gb|ADN29851.1| histone H3.3 [Triatoma matogrossensis] gi|307169357|gb|EFN62078.1| Histone H3.3 [Camponotus floridanus] gi|307204447|gb|EFN83154.1| Histone H3.3 [Harpegnathos saltator] gi|307755311|gb|EFO14545.1| histone H3 [Loa loa] gi|307764087|gb|EFO23321.1| H3 histone, family 3A [Loa loa] gi|308321393|gb|ADO27848.1| histone h3.3 [Ictalurus furcatus] gi|308323577|gb|ADO28924.1| histone h3.3 [Ictalurus punctatus] gi|312371651|gb|EFR19783.1| hypothetical protein AND_30674 [Anopheles darlingi] gi|313220014|emb|CBY30878.1| unnamed protein product [Oikopleura dioica] gi|313234149|emb|CBY10218.1| unnamed protein product [Oikopleura dioica] gi|313235983|emb|CBY25129.1| unnamed protein product [Oikopleura dioica] gi|317419125|emb|CBN81162.1| Histone H3 [Dicentrarchus labrax] gi|317419264|emb|CBN81301.1| Uncharacterized protein [Dicentrarchus labrax] gi|321463426|gb|EFX74442.1| hypothetical protein DAPPUDRAFT_231307 [Daphnia pulex] gi|324509917|gb|ADY44152.1| Histone H3.3 [Ascaris suum] gi|325302694|tpg|DAA34575.1| TPA_exp: H3 histone family 3A [Amblyomma variegatum] gi|332028951|gb|EGI68969.1| Histone H3.3 [Acromyrmex echinatior] gi|332028952|gb|EGI68970.1| Histone H3.3 [Acromyrmex echinatior] gi|332375154|gb|AEE62718.1| unknown [Dendroctonus ponderosae] gi|333469959|gb|EGK97461.1| AGAP001813-PB [Anopheles gambiae str. PEST] gi|335775411|gb|AEH58563.1| histone H3.3-like protein [Equus caballus] gi|336087732|emb|CBM82511.1| histone H3.3 protein [Balanoglossus clavigerus] gi|343458983|gb|AEM37650.1| histone H3 [Epinephelus bruneus] gi|343959538|dbj|BAK63626.1| histone H3.3 [Pan troglodytes] gi|351703433|gb|EHB06352.1| Histone H3.3 [Heterocephalus glaber] gi|351707846|gb|EHB10765.1| Histone H3.3 [Heterocephalus glaber] gi|355558716|gb|EHH15496.1| hypothetical protein EGK_01597 [Macaca mulatta] gi|355568926|gb|EHH25207.1| hypothetical protein EGK_08989 [Macaca mulatta] gi|355745875|gb|EHH50500.1| hypothetical protein EGM_01343 [Macaca fascicularis] gi|355760552|gb|EHH61688.1| hypothetical protein EGM_19729 [Macaca fascicularis] gi|357627942|gb|EHJ77454.1| hypothetical protein KGM_11308 [Danaus plexippus] gi|384939288|gb|AFI33249.1| histone H3.3 [Macaca mulatta] gi|387016374|gb|AFJ50306.1| Histone H3.3 [Crotalus adamanteus] gi|387016376|gb|AFJ50307.1| Histone H3.3 [Crotalus adamanteus] gi|387016378|gb|AFJ50308.1| H3 histone, family 3A [Crotalus adamanteus] gi|387541660|gb|AFJ71457.1| histone H3.3 [Macaca mulatta] gi|389609103|dbj|BAM18163.1| histone H3.3B [Papilio xuthus] gi|389611069|dbj|BAM19145.1| histone H3.3B [Papilio polytes] gi|392881652|gb|AFM89658.1| histone H33 [Callorhinchus milii] gi|402588820|gb|EJW82753.1| histone H3 [Wuchereria bancrofti] gi|402593333|gb|EJW87260.1| histone H3 [Wuchereria bancrofti] gi|405947928|gb|EKC17910.1| Histone H3.3 [Crassostrea gigas] gi|410220188|gb|JAA07313.1| H3 histone, family 3A [Pan troglodytes] gi|410220190|gb|JAA07314.1| H3 histone, family 3A [Pan troglodytes] gi|410303558|gb|JAA30379.1| H3 histone, family 3A [Pan troglodytes] gi|417396085|gb|JAA45076.1| Putative histone h3.3-like protein [Desmodus rotundus] gi|417515874|gb|JAA53742.1| histone H3.3 [Sus scrofa] gi|427786365|gb|JAA58634.1| Putative family 3b.1 [Rhipicephalus pulchellus] gi|431908767|gb|ELK12359.1| Histone H3.3 [Pteropus alecto] gi|440213373|gb|AGB92618.1| histone H3.3A, isoform C [Drosophila melanogaster] gi|440213374|gb|AAN10526.2| histone H3.3A, isoform D [Drosophila melanogaster] gi|440216577|gb|AGB95217.1| histone H3.3B, isoform D [Drosophila melanogaster] gi|440896848|gb|ELR48666.1| hypothetical protein M91_05641 [Bos grunniens mutus] gi|440898503|gb|ELR49990.1| Histone H3.3 [Bos grunniens mutus] gi|442747111|gb|JAA65715.1| Putative histones h3 and h4 [Ixodes ricinus] gi|443429390|gb|AGC92675.1| Histone H3.3-like protein [Heliconius erato] gi|443692090|gb|ELT93764.1| hypothetical protein CAPTEDRAFT_152257 [Capitella teleta] gi|444727830|gb|ELW68308.1| Histone H3.3 [Tupaia chinensis] | Back alignment and taxonomy information |
|---|
Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 132/136 (97%), Positives = 132/136 (97%), Gaps = 4/136 (2%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTE 56
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR TVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 117 MPKDIQLARRIRGERA 132
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
|
Source: Homo sapiens Species: Homo sapiens Genus: Homo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|334359125|pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.3 gi|334359129|pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone Variant H3.3 | Back alignment and taxonomy information |
|---|
| >gi|225703532|gb|ACO07612.1| Histone H3.3 [Oncorhynchus mykiss] | Back alignment and taxonomy information |
|---|
| >gi|256086246|ref|XP_002579313.1| histone H3 [Schistosoma mansoni] gi|56753077|gb|AAW24748.1| SJCHGC01198 protein [Schistosoma japonicum] gi|226475830|emb|CAX72005.1| Histone H3.3 [Schistosoma japonicum] gi|226475832|emb|CAX72006.1| Histone H3.3 [Schistosoma japonicum] gi|226475834|emb|CAX72007.1| Histone H3.3 [Schistosoma japonicum] gi|226475836|emb|CAX72008.1| Histone H3.3 [Schistosoma japonicum] gi|226475838|emb|CAX72009.1| Histone H3.3 [Schistosoma japonicum] gi|226475840|emb|CAX72010.1| Histone H3.3 [Schistosoma japonicum] gi|226475842|emb|CAX72011.1| Histone H3.3 [Schistosoma japonicum] gi|226475844|emb|CAX72012.1| Histone H3.3 [Schistosoma japonicum] gi|226479668|emb|CAX78697.1| Histone H3.3 [Schistosoma japonicum] gi|226479670|emb|CAX78698.1| Histone H3.3 [Schistosoma japonicum] gi|226479674|emb|CAX78700.1| Histone H3.3 [Schistosoma japonicum] gi|226479676|emb|CAX78701.1| Histone H3.3 [Schistosoma japonicum] gi|226479678|emb|CAX78702.1| Histone H3.3 [Schistosoma japonicum] gi|226479680|emb|CAX78703.1| Histone H3.3 [Schistosoma japonicum] gi|226479682|emb|CAX78704.1| Histone H3.3 [Schistosoma japonicum] gi|226479684|emb|CAX78705.1| Histone H3.3 [Schistosoma japonicum] gi|226479686|emb|CAX78706.1| Histone H3.3 [Schistosoma japonicum] gi|226479688|emb|CAX78707.1| Histone H3.3 [Schistosoma japonicum] gi|226479690|emb|CAX78708.1| Histone H3.3 [Schistosoma japonicum] gi|226479692|emb|CAX78709.1| Histone H3.3 [Schistosoma japonicum] gi|226479694|emb|CAX78710.1| Histone H3.3 [Schistosoma japonicum] gi|226479696|emb|CAX78711.1| Histone H3.3 [Schistosoma japonicum] gi|226479698|emb|CAX78712.1| Histone H3.3 [Schistosoma japonicum] gi|226479700|emb|CAX78713.1| Histone H3.3 [Schistosoma japonicum] gi|226479702|emb|CAX78714.1| Histone H3.3 [Schistosoma japonicum] gi|226479704|emb|CAX78715.1| Histone H3.3 [Schistosoma japonicum] gi|226479708|emb|CAX78716.1| Histone H3.3 [Schistosoma japonicum] gi|226485525|emb|CAX75182.1| Histone H3.3 [Schistosoma japonicum] gi|226485527|emb|CAX75183.1| Histone H3.3 [Schistosoma japonicum] gi|226485529|emb|CAX75184.1| Histone H3.3 [Schistosoma japonicum] gi|226485531|emb|CAX75185.1| Histone H3.3 [Schistosoma japonicum] gi|238664740|emb|CAZ35552.1| histone H3, putative [Schistosoma mansoni] gi|349935962|dbj|GAA29599.1| histone H3 [Clonorchis sinensis] | Back alignment and taxonomy information |
|---|
| >gi|307204446|gb|EFN83153.1| Histone H3.3 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
| >gi|225704818|gb|ACO08255.1| Histone H3.3 [Oncorhynchus mykiss] | Back alignment and taxonomy information |
|---|
| >gi|45384744|gb|AAS59415.1| histone H3.3B [Chinchilla lanigera] | Back alignment and taxonomy information |
|---|
| >gi|221221048|gb|ACM09185.1| Histone H3.3 [Salmo salar] | Back alignment and taxonomy information |
|---|
| >gi|126697402|gb|ABO26658.1| histone H3 [Haliotis discus discus] gi|208657743|gb|ACI30168.1| H3 histone family 3A [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
| >gi|189053462|dbj|BAG35628.1| unnamed protein product [Homo sapiens] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 132 | ||||||
| FB|FBgn0014857 | 136 | His3.3A "Histone H3.3A" [Droso | 1.0 | 0.970 | 0.970 | 3e-62 | |
| FB|FBgn0004828 | 136 | His3.3B "Histone H3.3B" [Droso | 1.0 | 0.970 | 0.970 | 3e-62 | |
| UNIPROTKB|P84247 | 136 | H3-IX "Histone H3.3" [Gallus g | 1.0 | 0.970 | 0.970 | 3e-62 | |
| UNIPROTKB|Q5E9F8 | 136 | H3F3A "Histone H3.3" [Bos taur | 1.0 | 0.970 | 0.970 | 3e-62 | |
| UNIPROTKB|E2R6K5 | 136 | H3F3B "Histone H3" [Canis lupu | 1.0 | 0.970 | 0.970 | 3e-62 | |
| UNIPROTKB|P84243 | 136 | H3F3A "Histone H3.3" [Homo sap | 1.0 | 0.970 | 0.970 | 3e-62 | |
| UNIPROTKB|Q71LE2 | 136 | H3F3A "Histone H3.3" [Sus scro | 1.0 | 0.970 | 0.970 | 3e-62 | |
| RGD|2319910 | 136 | H3f3a "H3 histone, family 3A" | 1.0 | 0.970 | 0.970 | 3e-62 | |
| RGD|621095 | 136 | H3f3b "H3 histone, family 3B" | 1.0 | 0.970 | 0.970 | 3e-62 | |
| ZFIN|ZDB-GENE-050417-65 | 137 | h3f3b.1 "H3 histone, family 3B | 1.0 | 0.963 | 0.963 | 4.8e-62 |
| FB|FBgn0014857 His3.3A "Histone H3.3A" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 132/136 (97%), Positives = 132/136 (97%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTE 56
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR TVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 117 MPKDIQLARRIRGERA 132
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
|
|
| FB|FBgn0004828 His3.3B "Histone H3.3B" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P84247 H3-IX "Histone H3.3" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5E9F8 H3F3A "Histone H3.3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R6K5 H3F3B "Histone H3" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P84243 H3F3A "Histone H3.3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q71LE2 H3F3A "Histone H3.3" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| RGD|2319910 H3f3a "H3 histone, family 3A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| RGD|621095 H3f3b "H3 histone, family 3B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050417-65 h3f3b.1 "H3 histone, family 3B.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 132 | |||
| PTZ00018 | 136 | PTZ00018, PTZ00018, histone H3; Provisional | 1e-77 | |
| PLN00121 | 136 | PLN00121, PLN00121, histone H3; Provisional | 2e-67 | |
| smart00428 | 105 | smart00428, H3, Histone H3 | 1e-50 | |
| PLN00161 | 135 | PLN00161, PLN00161, histone H3; Provisional | 4e-37 | |
| PLN00160 | 97 | PLN00160, PLN00160, histone H3; Provisional | 1e-33 | |
| pfam00125 | 75 | pfam00125, Histone, Core histone H2A/H2B/H3/H4 | 5e-30 | |
| COG2036 | 91 | COG2036, HHT1, Histones H3 and H4 [Chromatin struc | 6e-27 |
| >gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (574), Expect = 1e-77
Identities = 124/136 (91%), Positives = 130/136 (95%), Gaps = 4/136 (2%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTE 56
MARTKQTARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHR TVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTE 60
Query: 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 117 MPKDIQLARRIRGERA 132
MPKDIQLARRIRGER+
Sbjct: 121 MPKDIQLARRIRGERS 136
|
Length = 136 |
| >gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|128705 smart00428, H3, Histone H3 | Back alignment and domain information |
|---|
| >gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4 | Back alignment and domain information |
|---|
| >gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 132 | |||
| PTZ00018 | 136 | histone H3; Provisional | 100.0 | |
| PLN00121 | 136 | histone H3; Provisional | 100.0 | |
| PLN00161 | 135 | histone H3; Provisional | 100.0 | |
| KOG1745|consensus | 137 | 100.0 | ||
| PLN00160 | 97 | histone H3; Provisional | 100.0 | |
| smart00428 | 105 | H3 Histone H3. | 100.0 | |
| COG2036 | 91 | HHT1 Histones H3 and H4 [Chromatin structure and d | 99.93 | |
| PF00125 | 75 | Histone: Core histone H2A/H2B/H3/H4 histone h2a si | 99.85 | |
| cd07981 | 72 | TAF12 TATA Binding Protein (TBP) Associated Factor | 99.4 | |
| cd00076 | 85 | H4 Histone H4, one of the four histones, along wit | 99.28 | |
| PLN00035 | 103 | histone H4; Provisional | 99.24 | |
| PTZ00015 | 102 | histone H4; Provisional | 99.22 | |
| smart00803 | 65 | TAF TATA box binding protein associated factor. TA | 99.17 | |
| smart00417 | 74 | H4 Histone H4. | 99.07 | |
| PLN00158 | 116 | histone H2B; Provisional | 98.86 | |
| cd07979 | 117 | TAF9 TATA Binding Protein (TBP) Associated Factor | 98.81 | |
| PTZ00463 | 117 | histone H2B; Provisional | 98.77 | |
| PF00808 | 65 | CBFD_NFYB_HMF: Histone-like transcription factor ( | 98.76 | |
| smart00427 | 89 | H2B Histone H2B. | 98.74 | |
| PF15630 | 76 | CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C | 98.33 | |
| smart00576 | 77 | BTP Bromodomain transcription factors and PHD doma | 98.32 | |
| KOG1744|consensus | 127 | 98.29 | ||
| cd00074 | 115 | H2A Histone 2A; H2A is a subunit of the nucleosome | 98.24 | |
| KOG0870|consensus | 172 | 98.13 | ||
| PF03847 | 68 | TFIID_20kDa: Transcription initiation factor TFIID | 98.07 | |
| PF02969 | 66 | TAF: TATA box binding protein associated factor (T | 98.0 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 97.98 | |
| PF02291 | 129 | TFIID-31kDa: Transcription initiation factor IID, | 97.88 | |
| PF15511 | 414 | CENP-T: Centromere kinetochore component CENP-T; P | 97.82 | |
| KOG1142|consensus | 258 | 97.62 | ||
| KOG0869|consensus | 168 | 97.03 | ||
| KOG3334|consensus | 148 | 96.75 | ||
| KOG3467|consensus | 103 | 96.64 | ||
| PF07524 | 77 | Bromo_TP: Bromodomain associated; InterPro: IPR006 | 96.62 | |
| KOG0871|consensus | 156 | 95.83 | ||
| PLN00154 | 136 | histone H2A; Provisional | 94.87 | |
| smart00414 | 106 | H2A Histone 2A. | 94.63 | |
| PF02269 | 93 | TFIID-18kDa: Transcription initiation factor IID, | 94.54 | |
| PTZ00017 | 134 | histone H2A; Provisional | 94.29 | |
| COG5262 | 132 | HTA1 Histone H2A [Chromatin structure and dynamics | 93.48 | |
| KOG2549|consensus | 576 | 93.04 | ||
| PLN00156 | 139 | histone H2AX; Provisional | 92.88 | |
| PLN00157 | 132 | histone H2A; Provisional | 92.69 | |
| PLN00153 | 129 | histone H2A; Provisional | 92.15 | |
| PTZ00252 | 134 | histone H2A; Provisional | 91.08 | |
| COG5150 | 148 | Class 2 transcription repressor NC2, beta subunit | 90.9 | |
| COG5094 | 145 | TAF9 Transcription initiation factor TFIID, subuni | 90.6 | |
| KOG1756|consensus | 131 | 90.37 | ||
| cd08045 | 212 | TAF4 TATA Binding Protein (TBP) Associated Factor | 90.29 | |
| cd07978 | 92 | TAF13 The TATA Binding Protein (TBP) Associated Fa | 90.27 | |
| PF05236 | 264 | TAF4: Transcription initiation factor TFIID compon | 89.32 | |
| KOG4336|consensus | 323 | 87.55 | ||
| COG5248 | 126 | TAF19 Transcription initiation factor TFIID, subun | 84.25 | |
| KOG1657|consensus | 236 | 84.19 | ||
| PF09123 | 138 | DUF1931: Domain of unknown function (DUF1931); Int | 82.7 | |
| KOG3901|consensus | 109 | 80.87 | ||
| COG5208 | 286 | HAP5 CCAAT-binding factor, subunit C [Transcriptio | 80.77 |
| >PTZ00018 histone H3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-54 Score=318.53 Aligned_cols=131 Identities=95% Similarity=1.291 Sum_probs=124.3
Q ss_pred CCCccccccccCCCCCCcchhhhhhhccCCCCCCCCCCccc----cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhh
Q psy10959 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 76 (132)
Q Consensus 1 Martk~~a~k~~~~kap~k~~~~~~~~~~~p~~~~~~~~~r----~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~ 76 (132)
|||||+++++++|+++|+++.++++..++.+.+++.++++| +++|+|||+||+||+|||||+||+||||||++++.
T Consensus 1 MaRtk~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PTZ00018 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcC
Confidence 99999999999999999999988877777766777777766 99999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhccc
Q psy10959 77 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 131 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~ 131 (132)
.++|||++||++|||++|+|||+||||+|+||+||||||||++||+|+.+|||++
T Consensus 81 ~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PTZ00018 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred CcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999999986
|
|
| >PLN00121 histone H3; Provisional | Back alignment and domain information |
|---|
| >PLN00161 histone H3; Provisional | Back alignment and domain information |
|---|
| >KOG1745|consensus | Back alignment and domain information |
|---|
| >PLN00160 histone H3; Provisional | Back alignment and domain information |
|---|
| >smart00428 H3 Histone H3 | Back alignment and domain information |
|---|
| >COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ] | Back alignment and domain information |
|---|
| >cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
| >cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution | Back alignment and domain information |
|---|
| >PLN00035 histone H4; Provisional | Back alignment and domain information |
|---|
| >PTZ00015 histone H4; Provisional | Back alignment and domain information |
|---|
| >smart00803 TAF TATA box binding protein associated factor | Back alignment and domain information |
|---|
| >smart00417 H4 Histone H4 | Back alignment and domain information |
|---|
| >PLN00158 histone H2B; Provisional | Back alignment and domain information |
|---|
| >cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
| >PTZ00463 histone H2B; Provisional | Back alignment and domain information |
|---|
| >PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin | Back alignment and domain information |
|---|
| >smart00427 H2B Histone H2B | Back alignment and domain information |
|---|
| >PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C | Back alignment and domain information |
|---|
| >smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins | Back alignment and domain information |
|---|
| >KOG1744|consensus | Back alignment and domain information |
|---|
| >cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome | Back alignment and domain information |
|---|
| >KOG0870|consensus | Back alignment and domain information |
|---|
| >PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] | Back alignment and domain information |
|---|
| >PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex | Back alignment and domain information |
|---|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
| >PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] | Back alignment and domain information |
|---|
| >PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T | Back alignment and domain information |
|---|
| >KOG1142|consensus | Back alignment and domain information |
|---|
| >KOG0869|consensus | Back alignment and domain information |
|---|
| >KOG3334|consensus | Back alignment and domain information |
|---|
| >KOG3467|consensus | Back alignment and domain information |
|---|
| >PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO) | Back alignment and domain information |
|---|
| >KOG0871|consensus | Back alignment and domain information |
|---|
| >PLN00154 histone H2A; Provisional | Back alignment and domain information |
|---|
| >smart00414 H2A Histone 2A | Back alignment and domain information |
|---|
| >PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18) | Back alignment and domain information |
|---|
| >PTZ00017 histone H2A; Provisional | Back alignment and domain information |
|---|
| >COG5262 HTA1 Histone H2A [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2549|consensus | Back alignment and domain information |
|---|
| >PLN00156 histone H2AX; Provisional | Back alignment and domain information |
|---|
| >PLN00157 histone H2A; Provisional | Back alignment and domain information |
|---|
| >PLN00153 histone H2A; Provisional | Back alignment and domain information |
|---|
| >PTZ00252 histone H2A; Provisional | Back alignment and domain information |
|---|
| >COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription] | Back alignment and domain information |
|---|
| >COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
| >KOG1756|consensus | Back alignment and domain information |
|---|
| >cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
| >cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
| >PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site | Back alignment and domain information |
|---|
| >KOG4336|consensus | Back alignment and domain information |
|---|
| >COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription] | Back alignment and domain information |
|---|
| >KOG1657|consensus | Back alignment and domain information |
|---|
| >PF09123 DUF1931: Domain of unknown function (DUF1931); InterPro: IPR015207 This entry represents a set of hypothetical bacterial proteins containing a core of six alpha-helices, where one central helix is surrounded by the other five | Back alignment and domain information |
|---|
| >KOG3901|consensus | Back alignment and domain information |
|---|
| >COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 132 | ||||
| 4hga_B | 136 | Structure Of The Variant Histone H3.3-H4 Heterodime | 6e-70 | ||
| 3av2_A | 139 | The Human Nucleosome Structure Containing The Histo | 7e-70 | ||
| 2hio_C | 136 | Histone Octamer (Chicken), Chromosomal Protein Leng | 4e-68 | ||
| 3av1_A | 139 | The Human Nucleosome Structure Containing The Histo | 5e-68 | ||
| 2cv5_A | 136 | Crystal Structure Of Human Nucleosome Core Particle | 2e-67 | ||
| 3lel_A | 136 | Structural Insight Into The Sequence-Dependence Of | 2e-67 | ||
| 3afa_A | 139 | The Human Nucleosome Structure Length = 139 | 2e-67 | ||
| 2io5_B | 135 | Crystal Structure Of The Cia- Histone H3-H4 Complex | 2e-67 | ||
| 3azh_A | 139 | Crystal Structure Of Human Nucleosome Core Particle | 5e-67 | ||
| 3azg_A | 139 | Crystal Structure Of Human Nucleosome Core Particle | 5e-67 | ||
| 3azf_A | 139 | Crystal Structure Of Human Nucleosome Core Particle | 5e-67 | ||
| 3aze_A | 139 | Crystal Structure Of Human Nucleosome Core Particle | 5e-67 | ||
| 3ayw_A | 139 | Crystal Structure Of Human Nucleosome Core Particle | 5e-67 | ||
| 1kx3_A | 135 | X-Ray Structure Of The Nucleosome Core Particle, Nc | 1e-66 | ||
| 1f66_A | 136 | 2.6 A Crystal Structure Of A Nucleosome Core Partic | 1e-66 | ||
| 4h9n_A | 135 | Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 13 | 3e-66 | ||
| 3kxb_A | 135 | Structural Characterization Of H3k56q Nucleosomes A | 3e-66 | ||
| 3a6n_A | 139 | The Nucleosome Containing A Testis-Specific Histone | 7e-66 | ||
| 1zla_A | 135 | X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L | 7e-66 | ||
| 4h9s_A | 135 | Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 13 | 2e-65 | ||
| 4h9o_A | 135 | Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length | 2e-65 | ||
| 1m18_A | 135 | Ligand Binding Alters The Structure And Dynamics Of | 3e-65 | ||
| 1p3b_A | 135 | Crystallographic Studies Of Nucleosome Core Particl | 3e-65 | ||
| 3c1c_A | 135 | The Effect Of H3 K79 Dimethylation And H4 K20 Trime | 4e-65 | ||
| 1p3k_A | 135 | Crystallographic Studies Of Nucleosome Core Particl | 1e-64 | ||
| 1p3a_A | 135 | Crystallographic Studies Of Nucleosome Core Particl | 2e-64 | ||
| 1p3m_A | 135 | Crystallographic Studies Of Nucleosome Core Particl | 2e-64 | ||
| 1p34_A | 135 | Crystallographic Studies Of Nucleosome Core Particl | 2e-64 | ||
| 1p3l_A | 135 | Crystallographic Studies Of Nucleosome Core Particl | 3e-64 | ||
| 1id3_A | 135 | Crystal Structure Of The Yeast Nucleosome Core Part | 7e-62 | ||
| 4h9p_A | 135 | Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length | 7e-59 | ||
| 1aoi_A | 116 | Complex Between Nucleosome Core Particle (H3,H4,H2a | 5e-56 | ||
| 1hio_C | 93 | Histone Octamer (Chicken), Chromosomal Protein, Alp | 6e-46 | ||
| 3kwq_A | 98 | Structural Characterization Of H3k56q Nucleosomes A | 7e-46 | ||
| 2hue_B | 77 | Structure Of The H3-h4 Chaperone Asf1 Bound To Hist | 7e-37 | ||
| 4eo5_B | 76 | Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76 | 8e-37 | ||
| 2yfw_A | 92 | Heterotetramer Structure Of Kluyveromyces Lactis Cs | 3e-29 | ||
| 2yfv_A | 100 | The Heterotrimeric Complex Of Kluyveromyces Lactis | 2e-28 | ||
| 3nqu_A | 140 | Crystal Structure Of Partially Trypsinized (Cenp-AH | 9e-26 | ||
| 3an2_A | 143 | The Structure Of The Centromeric Nucleosome Contain | 9e-26 | ||
| 3r45_A | 156 | Structure Of A Cenp-A-Histone H4 Heterodimer In Com | 1e-25 | ||
| 2l5a_A | 235 | Structural Basis For Recognition Of Centromere Spec | 2e-25 | ||
| 3nqj_A | 82 | Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER Len | 5e-20 | ||
| 2ly8_A | 121 | The Budding Yeast Chaperone Scm3 Recognizes The Par | 6e-15 | ||
| 4ft4_P | 32 | Crystal Structure Of Zea Mays Zmet2 In Complex H3(1 | 3e-09 | ||
| 4hsu_C | 30 | Crystal Structure Of Lsd2-npac With H3(1-26)in Spac | 1e-08 | ||
| 3n9p_B | 32 | Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 | 2e-08 | ||
| 3n9n_B | 32 | Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 P | 2e-08 | ||
| 4gu0_E | 26 | Crystal Structure Of Lsd2 With H3 Length = 26 | 2e-06 | ||
| 3u5p_I | 28 | Crystal Structure Of The Complex Of Trim33 Phd-Brom | 9e-06 | ||
| 3a1b_A | 159 | Crystal Structure Of The Dnmt3a Add Domain In Compl | 5e-05 | ||
| 3kv4_B | 24 | Structure Of Phf8 In Complex With Histone H3 Length | 5e-05 | ||
| 3avr_B | 22 | Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H | 2e-04 | ||
| 2kft_B | 21 | Nmr Solution Structure Of The First Phd Finger Doma | 2e-04 | ||
| 2kwk_B | 20 | Solution Structures Of The Double Phd Fingers Of Hu | 3e-04 | ||
| 2uxn_E | 21 | Structural Basis Of Histone Demethylation By Lsd1 R | 4e-04 | ||
| 2v1d_C | 21 | Structural Basis Of Lsd1-Corest Selectivity In Hist | 4e-04 | ||
| 2g46_C | 21 | Structure Of Vset In Complex With Mek27 H3 Pept. An | 8e-04 |
| >pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In Complex With Its Chaperone Daxx Length = 136 | Back alignment and structure |
|
| >pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.3 Length = 139 | Back alignment and structure |
| >pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein Length = 136 | Back alignment and structure |
| >pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.2 Length = 139 | Back alignment and structure |
| >pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Length = 136 | Back alignment and structure |
| >pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of Nucleosom Positioning Length = 136 | Back alignment and structure |
| >pdb|3AFA|A Chain A, The Human Nucleosome Structure Length = 139 | Back alignment and structure |
| >pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex Length = 135 | Back alignment and structure |
| >pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k122q Mutation Length = 139 | Back alignment and structure |
| >pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k115q Mutation Length = 139 | Back alignment and structure |
| >pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k79q Mutation Length = 139 | Back alignment and structure |
| >pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k64q Mutation Length = 139 | Back alignment and structure |
| >pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k56q Mutation Length = 139 | Back alignment and structure |
| >pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 135 | Back alignment and structure |
| >pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 136 | Back alignment and structure |
| >pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 135 | Back alignment and structure |
| >pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleosomal Arrays Length = 135 | Back alignment and structure |
| >pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 139 | Back alignment and structure |
| >pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 135 | Back alignment and structure |
| >pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 135 | Back alignment and structure |
| >pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length = 135 | Back alignment and structure |
| >pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 135 | Back alignment and structure |
| >pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 | Back alignment and structure |
| >pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 135 | Back alignment and structure |
| >pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 | Back alignment and structure |
| >pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 | Back alignment and structure |
| >pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 | Back alignment and structure |
| >pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 | Back alignment and structure |
| >pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 | Back alignment and structure |
| >pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 135 | Back alignment and structure |
| >pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length = 135 | Back alignment and structure |
| >pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116 | Back alignment and structure |
| >pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 93 | Back alignment and structure |
| >pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 98 | Back alignment and structure |
| >pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3 And H4 Length = 77 | Back alignment and structure |
| >pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76 | Back alignment and structure |
| >pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4 Length = 92 | Back alignment and structure |
| >pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3, Cse4 And H4 Length = 100 | Back alignment and structure |
| >pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2 HETEROTETRAMER Length = 140 | Back alignment and structure |
| >pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 143 | Back alignment and structure |
| >pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex With Chaperone Hjurp Length = 156 | Back alignment and structure |
| >pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific Histone H3 Variant By Nonhistone Scm3 Length = 235 | Back alignment and structure |
| >pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER Length = 82 | Back alignment and structure |
| >pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially Unfolded Dimer Of The Centromere-specific Cse4/h4 Histone Variant Length = 121 | Back alignment and structure |
| >pdb|4FT4|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-32)k9me2 Peptide And Sah Length = 32 | Back alignment and structure |
| >pdb|4HSU|C Chain C, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group P21 Length = 30 | Back alignment and structure |
| >pdb|3N9P|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide And Nog Length = 32 | Back alignment and structure |
| >pdb|3N9N|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide And Nog Length = 32 | Back alignment and structure |
| >pdb|4GU0|E Chain E, Crystal Structure Of Lsd2 With H3 Length = 26 | Back alignment and structure |
| >pdb|3U5P|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And H3(1-28) K9me3k14ack18ack23ac Histone Peptide Length = 28 | Back alignment and structure |
| >pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex With Histone H3 Length = 159 | Back alignment and structure |
| >pdb|3KV4|B Chain B, Structure Of Phf8 In Complex With Histone H3 Length = 24 | Back alignment and structure |
| >pdb|3AVR|B Chain B, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3 PEPTIDE, N-Oxyalylglycine, And Ni(Ii) Length = 22 | Back alignment and structure |
| >pdb|2KFT|B Chain B, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 21 | Back alignment and structure |
| >pdb|2KWK|B Chain B, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild Type Length = 20 | Back alignment and structure |
| >pdb|2UXN|E Chain E, Structural Basis Of Histone Demethylation By Lsd1 Revealed By Suicide Inactivation Length = 21 | Back alignment and structure |
| >pdb|2V1D|C Chain C, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 21 | Back alignment and structure |
| >pdb|2G46|C Chain C, Structure Of Vset In Complex With Mek27 H3 Pept. And Cofactor Product Sah Length = 21 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 132 | |||
| 1tzy_C | 136 | Histone H3; histone-fold, tetramer-dimer-dimer, DN | 2e-45 | |
| 2hue_B | 77 | Histone H3; mini beta sheet, elongated beta sandwh | 2e-39 | |
| 3nqu_A | 140 | Histone H3-like centromeric protein A; alpha helix | 1e-34 | |
| 3nqj_A | 82 | Histone H3-like centromeric protein A; alpha helix | 1e-32 | |
| 2yfv_A | 100 | Histone H3-like centromeric protein CSE4; cell cyc | 2e-32 | |
| 3r45_A | 156 | Histone H3-like centromeric protein A; histone fol | 2e-32 | |
| 2l5a_A | 235 | Histone H3-like centromeric protein CSE4, protein | 9e-28 | |
| 2l5a_A | 235 | Histone H3-like centromeric protein CSE4, protein | 2e-04 | |
| 3avr_B | 26 | Histone H3; cupin superfamily, TRI/dimethyllysine | 2e-04 | |
| 2x4w_B | 26 | Histone H3.2; transcription, metal-binding, zinc-f | 3e-04 |
| >1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Length = 136 | Back alignment and structure |
|---|
Score = 143 bits (360), Expect = 2e-45
Identities = 127/136 (93%), Positives = 130/136 (95%), Gaps = 4/136 (2%)
Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPH----RTVALREIRRYQKSTE 56
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPH TVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 117 MPKDIQLARRIRGERA 132
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
|
| >2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Length = 77 | Back alignment and structure |
|---|
| >3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Length = 140 | Back alignment and structure |
|---|
| >3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Length = 82 | Back alignment and structure |
|---|
| >2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Length = 100 | Back alignment and structure |
|---|
| >3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Length = 156 | Back alignment and structure |
|---|
| >2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235 | Back alignment and structure |
|---|
| >2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235 | Back alignment and structure |
|---|
| >3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} Length = 26 | Back alignment and structure |
|---|
| >2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B* Length = 26 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 132 | |||
| 1tzy_C | 136 | Histone H3; histone-fold, tetramer-dimer-dimer, DN | 100.0 | |
| 3nqu_A | 140 | Histone H3-like centromeric protein A; alpha helix | 100.0 | |
| 3r45_A | 156 | Histone H3-like centromeric protein A; histone fol | 100.0 | |
| 2yfv_A | 100 | Histone H3-like centromeric protein CSE4; cell cyc | 100.0 | |
| 2hue_B | 77 | Histone H3; mini beta sheet, elongated beta sandwh | 100.0 | |
| 3nqj_A | 82 | Histone H3-like centromeric protein A; alpha helix | 100.0 | |
| 2l5a_A | 235 | Histone H3-like centromeric protein CSE4, protein | 100.0 | |
| 2ly8_A | 121 | Budding yeast chaperone SCM3; centromere protein, | 99.94 | |
| 1b67_A | 68 | Protein (histone HMFA); DNA binding protein; 1.48A | 99.84 | |
| 1ku5_A | 70 | HPHA, archaeal histon; histone fold, DNA binding p | 99.76 | |
| 1n1j_A | 93 | NF-YB; histone-like PAIR, DNA binding protein; 1.6 | 99.65 | |
| 1id3_B | 102 | Histone H4; nucleosome core particle, chromatin, p | 99.3 | |
| 1tzy_D | 103 | Histone H4-VI; histone-fold, tetramer-dimer-dimer, | 99.29 | |
| 2yfw_B | 103 | Histone H4, H4; cell cycle, kinetochore, centromer | 99.28 | |
| 2hue_C | 84 | Histone H4; mini beta sheet, elongated beta sandwh | 99.27 | |
| 3b0c_T | 111 | CENP-T, centromere protein T; histone fold, DNA bi | 99.2 | |
| 1f1e_A | 154 | Histone fold protein; archaeal histone protein, DN | 99.19 | |
| 3b0c_W | 76 | CENP-W, centromere protein W; histone fold, DNA bi | 99.18 | |
| 2nqb_D | 123 | Histone H2B; nucleosome, NCP, chromatin, structura | 99.17 | |
| 1tzy_B | 126 | Histone H2B; histone-fold, tetramer-dimer-dimer, D | 99.16 | |
| 1taf_B | 70 | TFIID TBP associated factor 62; transcription init | 99.09 | |
| 1taf_A | 68 | TFIID TBP associated factor 42; transcription init | 99.05 | |
| 1f1e_A | 154 | Histone fold protein; archaeal histone protein, DN | 99.04 | |
| 3v9r_A | 90 | MHF1, uncharacterized protein YOL086W-A; histone f | 98.93 | |
| 4dra_A | 113 | Centromere protein S; DNA binding complex, DNA dam | 98.92 | |
| 3b0b_B | 107 | CENP-S, centromere protein S; histone fold, DNA bi | 98.86 | |
| 2byk_B | 128 | Chrac-14; nucleosome sliding, histone fold, DNA-bi | 98.84 | |
| 1jfi_B | 179 | DR1 protein, transcription regulator NC2 beta chai | 98.83 | |
| 3vh5_A | 140 | CENP-S; histone fold, chromosome segregation, DNA | 98.8 | |
| 2jss_A | 192 | Chimera of histone H2B.1 and histone H2A.Z; histon | 98.72 | |
| 1n1j_B | 97 | NF-YC; histone-like PAIR, DNA binding protein; 1.6 | 98.61 | |
| 4g92_C | 119 | HAPE; transcription factor, nucleosome, minor groo | 98.47 | |
| 2l5a_A | 235 | Histone H3-like centromeric protein CSE4, protein | 98.28 | |
| 2f8n_G | 120 | Core histone macro-H2A.1; nucleosome, NCP, macroh2 | 98.26 | |
| 2nqb_C | 123 | Histone H2A; nucleosome, NCP, chromatin, structura | 98.23 | |
| 1jfi_A | 98 | Transcription regulator NC2 alpha chain; histone, | 98.22 | |
| 1tzy_A | 129 | Histone H2A-IV; histone-fold, tetramer-dimer-dimer | 98.2 | |
| 1h3o_B | 76 | Transcription initiation factor TFIID 20/15 kDa su | 98.15 | |
| 2f8n_K | 149 | Histone H2A type 1; nucleosome, NCP, macroh2A, his | 98.14 | |
| 1f66_C | 128 | Histone H2A.Z; nucleosome, chromatin, histone vari | 98.11 | |
| 1id3_C | 131 | Histone H2A.1; nucleosome core particle, chromatin | 98.09 | |
| 2byk_A | 140 | Chrac-16; nucleosome sliding, histone fold, DNA-bi | 97.86 | |
| 2jss_A | 192 | Chimera of histone H2B.1 and histone H2A.Z; histon | 97.85 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 97.61 | |
| 3a1b_A | 159 | DNA (cytosine-5)-methyltransferase 3A, histone H3; | 91.8 | |
| 3avr_B | 26 | Histone H3; cupin superfamily, TRI/dimethyllysine | 91.3 | |
| 4dra_E | 84 | Centromere protein X; DNA binding complex, DNA dam | 87.47 | |
| 1r4v_A | 171 | Hypothetical protein AQ_328; structural genomics, | 86.3 | |
| 3b0b_C | 81 | CENP-X, centromere protein X; histone fold, DNA bi | 85.9 | |
| 1wwi_A | 148 | Hypothetical protein TTHA1479; structural genomics | 82.83 |
| >1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=343.17 Aligned_cols=132 Identities=97% Similarity=1.301 Sum_probs=89.6
Q ss_pred CCCccccccccCCCCCCcchhhhhhhccCCCCCCCCCCccc----cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhh
Q psy10959 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 76 (132)
Q Consensus 1 Martk~~a~k~~~~kap~k~~~~~~~~~~~p~~~~~~~~~r----~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~ 76 (132)
||||||++++++||++|+|++++++++++.|.++++++|+| +++|+|||+||+||+||||++||+||||||+++|.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988887 99999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcccC
Q psy10959 77 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 132 (132)
Q Consensus 77 ~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~~ 132 (132)
+++|||++|+++|||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999864
|
| >3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A | Back alignment and structure |
|---|
| >3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A | Back alignment and structure |
|---|
| >2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} | Back alignment and structure |
|---|
| >3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A | Back alignment and structure |
|---|
| >1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 | Back alignment and structure |
|---|
| >1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 | Back alignment and structure |
|---|
| >1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... | Back alignment and structure |
|---|
| >2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} | Back alignment and structure |
|---|
| >2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B | Back alignment and structure |
|---|
| >3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T | Back alignment and structure |
|---|
| >1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 | Back alignment and structure |
|---|
| >3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W | Back alignment and structure |
|---|
| >2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* | Back alignment and structure |
|---|
| >1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... | Back alignment and structure |
|---|
| >1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 | Back alignment and structure |
|---|
| >3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A | Back alignment and structure |
|---|
| >3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} | Back alignment and structure |
|---|
| >2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B | Back alignment and structure |
|---|
| >1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A | Back alignment and structure |
|---|
| >2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 | Back alignment and structure |
|---|
| >1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C* | Back alignment and structure |
|---|
| >2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C | Back alignment and structure |
|---|
| >2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* | Back alignment and structure |
|---|
| >1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... | Back alignment and structure |
|---|
| >1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3 | Back alignment and structure |
|---|
| >2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 | Back alignment and structure |
|---|
| >1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 | Back alignment and structure |
|---|
| >1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 | Back alignment and structure |
|---|
| >2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A | Back alignment and structure |
|---|
| >2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 | Back alignment and structure |
|---|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
| >3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* | Back alignment and structure |
|---|
| >4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J | Back alignment and structure |
|---|
| >1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4 | Back alignment and structure |
|---|
| >3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D | Back alignment and structure |
|---|
| >1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 132 | ||||
| d1tzyc_ | 95 | a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), | 2e-52 | |
| d1f1ea_ | 151 | a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy | 2e-08 | |
| d1ku5a_ | 66 | a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococc | 3e-04 | |
| d1q9ca_ | 172 | a.22.1.3 (A:) Histone domain of Son of sevenless p | 0.001 | |
| d1htaa_ | 68 | a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth | 0.001 | |
| d1n1ja_ | 87 | a.22.1.3 (A:) Nuclear transcription factor Y subun | 0.002 |
| >d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Histone-fold superfamily: Histone-fold family: Nucleosome core histones domain: Histone H3 species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Score = 158 bits (402), Expect = 2e-52
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 42 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 101
TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLF
Sbjct: 5 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLF 64
Query: 102 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 132
EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 65 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95
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| >d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151 | Back information, alignment and structure |
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| >d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Length = 66 | Back information, alignment and structure |
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| >d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
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| >d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68 | Back information, alignment and structure |
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| >d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 132 | |||
| d1tzyc_ | 95 | Histone H3 {Chicken (Gallus gallus), erythrocytes | 100.0 | |
| d1f1ea_ | 151 | Archaeal histone {Archaeon Methanopyrus kandleri [ | 99.41 | |
| d1htaa_ | 68 | Archaeal histone {Archaeon Methanothermus fervidus | 99.35 | |
| d1ku5a_ | 66 | Archaeal histone {Archaeon (Pyrococcus horikoshii) | 99.25 | |
| d2huec1 | 82 | Histone H4 {African clawed frog (Xenopus laevis) [ | 99.01 | |
| d1tzyb_ | 92 | Histone H2B {Chicken (Gallus gallus), erythrocytes | 99.01 | |
| d1f1ea_ | 151 | Archaeal histone {Archaeon Methanopyrus kandleri [ | 98.99 | |
| d1n1ja_ | 87 | Nuclear transcription factor Y subunit beta (Nf-Yb | 98.92 | |
| d1jfib_ | 135 | Negative cofactor 2, NC2, beta chain {Human (Homo | 98.61 | |
| d1q9ca_ | 172 | Histone domain of Son of sevenless protein {Human | 98.55 | |
| d1n1jb_ | 78 | Nuclear transcription factor Y subunit gamma (Nf-Y | 98.49 | |
| d2bykb1 | 89 | Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax | 98.49 | |
| d1jfia_ | 66 | Negative cofactor 2, NC2, alpha chain {Human (Homo | 98.36 | |
| d1tafa_ | 68 | TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta | 98.06 | |
| d1h3ob_ | 74 | TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom | 97.94 | |
| d1tafb_ | 70 | TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta | 97.88 | |
| d1u35c1 | 106 | macro-H2A.1, histone domain {Human (Homo sapiens) | 96.61 | |
| d1f66c_ | 103 | Histone H2A {Human (Homo sapiens), variant H2A.Z [ | 96.56 | |
| d1tzya_ | 106 | Histone H2A {Chicken (Gallus gallus), erythrocytes | 96.49 | |
| d2byka1 | 72 | Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax | 96.45 | |
| d1q9ca_ | 172 | Histone domain of Son of sevenless protein {Human | 89.37 | |
| d1wwia1 | 148 | Hypothetical protein TTHA1479 {Thermus thermophilu | 83.57 | |
| d1r4va_ | 151 | Hypothetical protein Aq_328 {Aquifex aeolicus [Tax | 81.46 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.23 |
| >d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} | Back information, alignment and structure |
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class: All alpha proteins fold: Histone-fold superfamily: Histone-fold family: Nucleosome core histones domain: Histone H3 species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=100.00 E-value=9.1e-46 Score=257.86 Aligned_cols=91 Identities=97% Similarity=1.315 Sum_probs=89.6
Q ss_pred cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccH
Q psy10959 42 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 121 (132)
Q Consensus 42 ~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi 121 (132)
++||+|||+||+||++||||+||+||||||++++++++||+++|+++|||++|+|||++|||||+||+|+||||||++||
T Consensus 5 t~ALrEIRk~Qkst~lLIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~ 84 (95)
T d1tzyc_ 5 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 84 (95)
T ss_dssp HHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred hHHHHHHHHHhCCcccccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q psy10959 122 QLARRIRGERA 132 (132)
Q Consensus 122 ~La~rirg~~~ 132 (132)
+||++|||+++
T Consensus 85 ~LarrirG~r~ 95 (95)
T d1tzyc_ 85 QLARRIRGERA 95 (95)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHhccCC
Confidence 99999999974
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| >d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
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| >d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} | Back information, alignment and structure |
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| >d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} | Back information, alignment and structure |
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| >d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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| >d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} | Back information, alignment and structure |
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| >d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
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| >d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} | Back information, alignment and structure |
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| >d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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