Psyllid ID: psy10959


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHcccc
cccccHcHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHccccc
martkqtarkstggkaprkQLATKAarksapstggvkkphrTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
martkqtarkstggkaprkqlatkaarksapstggvkkphrtvalREIRRYQKstellirklpfqRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIhakrvtimpkdiqlarrirgera
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
******************************************VALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA********
MART*********************************KPHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE**
****************************************RTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
**************************************PHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query132 2.2.26 [Sep-21-2011]
Q6P823136 Histone H3.3 OS=Xenopus t yes N/A 1.0 0.970 0.970 6e-69
Q6PI79136 Histone H3.3 OS=Xenopus l N/A N/A 1.0 0.970 0.970 6e-69
P84248136 Histone H3.3 OS=Spisula s N/A N/A 1.0 0.970 0.970 6e-69
P84245136 Histone H3.3 OS=Rattus no yes N/A 1.0 0.970 0.970 6e-69
P84246136 Histone H3.3 OS=Oryctolag yes N/A 1.0 0.970 0.970 6e-69
Q71LE2136 Histone H3.3 OS=Sus scrof yes N/A 1.0 0.970 0.970 6e-69
P84244136 Histone H3.3 OS=Mus muscu yes N/A 1.0 0.970 0.970 6e-69
P84243136 Histone H3.3 OS=Homo sapi yes N/A 1.0 0.970 0.970 6e-69
P84249136 Histone H3.3 OS=Drosophil yes N/A 1.0 0.970 0.970 6e-69
P84250136 Histone H3.3 OS=Drosophil N/A N/A 1.0 0.970 0.970 6e-69
>sp|Q6P823|H33_XENTR Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3 Back     alignment and function desciption
 Score =  258 bits (660), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 132/136 (97%), Positives = 132/136 (97%), Gaps = 4/136 (2%)

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTE 56
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR    TVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 57  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 117 MPKDIQLARRIRGERA 132
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136




Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Xenopus tropicalis (taxid: 8364)
>sp|Q6PI79|H33_XENLA Histone H3.3 OS=Xenopus laevis PE=1 SV=3 Back     alignment and function description
>sp|P84248|H33_SPISO Histone H3.3 OS=Spisula solidissima PE=1 SV=2 Back     alignment and function description
>sp|P84245|H33_RAT Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2 Back     alignment and function description
>sp|P84246|H33_RABIT Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2 Back     alignment and function description
>sp|Q71LE2|H33_PIG Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3 Back     alignment and function description
>sp|P84244|H33_MOUSE Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2 Back     alignment and function description
>sp|P84243|H33_HUMAN Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2 Back     alignment and function description
>sp|P84249|H33_DROME Histone H3.3 OS=Drosophila melanogaster GN=His3.3A PE=1 SV=2 Back     alignment and function description
>sp|P84250|H33_DROHY Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query132
4504279136 histone H3.3 [Homo sapiens] gi|4885385|r 1.0 0.970 0.970 5e-67
334359125139 Chain A, The Human Nucleosome Structure 1.0 0.949 0.970 6e-67
225703532136 Histone H3.3 [Oncorhynchus mykiss] 1.0 0.970 0.963 7e-67
256086246136 histone H3 [Schistosoma mansoni] gi|5675 1.0 0.970 0.963 7e-67
307204446205 Histone H3.3 [Harpegnathos saltator] 1.0 0.643 0.970 8e-67
225704818136 Histone H3.3 [Oncorhynchus mykiss] 1.0 0.970 0.963 9e-67
45384744136 histone H3.3B [Chinchilla lanigera] 1.0 0.970 0.963 1e-66
221221048136 Histone H3.3 [Salmo salar] 1.0 0.970 0.963 1e-66
126697402136 histone H3 [Haliotis discus discus] gi|2 1.0 0.970 0.963 1e-66
189053462136 unnamed protein product [Homo sapiens] 1.0 0.970 0.963 1e-66
>gi|4504279|ref|NP_002098.1| histone H3.3 [Homo sapiens] gi|4885385|ref|NP_005315.1| histone H3.3 [Homo sapiens] gi|6680159|ref|NP_032236.1| histone H3.3 [Mus musculus] gi|6680161|ref|NP_032237.1| histone H3.3 [Mus musculus] gi|16758888|ref|NP_446437.1| histone H3.3 [Rattus norvegicus] gi|17530867|ref|NP_511095.1| histone H3.3B, isoform A [Drosophila melanogaster] gi|17647507|ref|NP_523479.1| histone H3.3A, isoform A [Drosophila melanogaster] gi|24640743|ref|NP_727314.1| histone H3.3B, isoform B [Drosophila melanogaster] gi|28571378|ref|NP_788892.1| histone H3.3B, isoform C [Drosophila melanogaster] gi|41053381|ref|NP_956297.1| H3 histone, family 3C [Danio rerio] gi|41055417|ref|NP_957395.1| H3 histone, family 3D [Danio rerio] gi|45360705|ref|NP_989026.1| histone H3.3 [Xenopus (Silurana) tropicalis] gi|46048708|ref|NP_990627.1| histone H3.3 [Gallus gallus] gi|47522626|ref|NP_999095.1| histone H3.3 [Sus scrofa] gi|52346112|ref|NP_001005101.1| H3 histone, family 3A [Xenopus (Silurana) tropicalis] gi|62177168|ref|NP_001014411.1| histone H3.3 [Bos taurus] gi|62955167|ref|NP_001017599.1| histone H3.3 [Danio rerio] gi|147906226|ref|NP_001080065.1| H3 histone, family 3B (H3.3B) [Xenopus laevis] gi|148231893|ref|NP_001086074.1| histone cluster 2, H3d [Xenopus laevis] gi|148233109|ref|NP_001085048.1| H3 histone, family 3B (H3.3B) [Xenopus laevis] gi|148236021|ref|NP_001079375.1| histone H3.3 [Xenopus laevis] gi|148298806|ref|NP_001091756.1| h3 histone family 3a [Bombyx mori] gi|148539598|ref|NP_001091902.1| H3 histone, family 3A [Xenopus laevis] gi|148727266|ref|NP_001092038.1| histone cluster 1, H3a [Pan troglodytes] gi|281182698|ref|NP_001162389.1| histone H3.1 [Papio anubis] gi|283806664|ref|NP_001164583.1| histone H3.3 [Oryctolagus cuniculus] gi|308818211|ref|NP_001184227.1| H3 histone, family 3A member [Taeniopygia guttata] gi|308818224|ref|NP_001184233.1| H3 histone, family 3A member [Taeniopygia guttata] gi|325197159|ref|NP_001191424.1| histone 3 [Aplysia californica] gi|336020387|ref|NP_001229500.1| H3 histone, family 3B [Bos taurus] gi|442615645|ref|NP_001259374.1| histone H3.3B, isoform D [Drosophila melanogaster] gi|442626113|ref|NP_001260082.1| histone H3.3A, isoform C [Drosophila melanogaster] gi|442626115|ref|NP_723056.2| histone H3.3A, isoform D [Drosophila melanogaster] gi|31241623|ref|XP_321242.1| AGAP001813-PA [Anopheles gambiae str. PEST] gi|57089073|ref|XP_537232.1| PREDICTED: histone H3.3 isoform 1 [Canis lupus familiaris] gi|66565026|ref|XP_624499.1| PREDICTED: histone H3.3-like isoform 2 [Apis mellifera] gi|73964884|ref|XP_858804.1| PREDICTED: histone H3.3 isoform 4 [Canis lupus familiaris] gi|91089509|ref|XP_975889.1| PREDICTED: similar to Histone H3.3B CG8989-PA isoform 2 [Tribolium castaneum] gi|109018064|ref|XP_001091581.1| PREDICTED: histone H3.3-like isoform 1 [Macaca mulatta] gi|109018066|ref|XP_001091695.1| PREDICTED: histone H3.3-like isoform 2 [Macaca mulatta] gi|109018068|ref|XP_001091816.1| PREDICTED: histone H3.3-like isoform 3 [Macaca mulatta] gi|109018072|ref|XP_001092054.1| PREDICTED: histone H3.3-like isoform 5 [Macaca mulatta] gi|109019307|ref|XP_001083683.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|109118262|ref|XP_001099829.1| PREDICTED: histone H3.3-like isoform 1 [Macaca mulatta] gi|109118272|ref|XP_001100109.1| PREDICTED: histone H3.3-like isoform 2 [Macaca mulatta] gi|110765924|ref|XP_001120696.1| PREDICTED: histone H3.3-like isoform 1 [Apis mellifera] gi|125984400|ref|XP_001355964.1| GA19158 [Drosophila pseudoobscura pseudoobscura] gi|126306915|ref|XP_001368225.1| PREDICTED: histone H3.3-like [Monodelphis domestica] gi|126308438|ref|XP_001369359.1| PREDICTED: histone H3.3-like isoform 1 [Monodelphis domestica] gi|126308440|ref|XP_001369390.1| PREDICTED: histone H3.3-like isoform 2 [Monodelphis domestica] gi|149641481|ref|XP_001514538.1| PREDICTED: histone H3.3-like [Ornithorhynchus anatinus] gi|149723295|ref|XP_001495110.1| PREDICTED: histone H3.3-like isoform 1 [Equus caballus] gi|149748720|ref|XP_001489292.1| PREDICTED: histone H3.3-like [Equus caballus] gi|156548619|ref|XP_001608166.1| PREDICTED: histone H3.3-like isoform 2 [Nasonia vitripennis] gi|156548623|ref|XP_001608174.1| PREDICTED: histone H3.3-like [Nasonia vitripennis] gi|157112482|ref|XP_001657554.1| histone H3.3 [Aedes aegypti] gi|170063956|ref|XP_001867328.1| histone H3.3 type 2 [Culex quinquefasciatus] gi|170585288|ref|XP_001897416.1| Histone H3.3 [Brugia malayi] gi|170589399|ref|XP_001899461.1| Histone H3.3 [Brugia malayi] gi|193688275|ref|XP_001949472.1| PREDICTED: histone H3.3-like [Acyrthosiphon pisum] gi|194761556|ref|XP_001962995.1| GF15720 [Drosophila ananassae] gi|194769246|ref|XP_001966717.1| GF19171 [Drosophila ananassae] gi|194856509|ref|XP_001968765.1| GG25048 [Drosophila erecta] gi|194890669|ref|XP_001977366.1| GG19000 [Drosophila erecta] gi|195035003|ref|XP_001989021.1| GH11489 [Drosophila grimshawi] gi|195047686|ref|XP_001992391.1| GH24723 [Drosophila grimshawi] gi|195114260|ref|XP_002001685.1| GI16984 [Drosophila mojavensis] gi|195131317|ref|XP_002010097.1| GI14879 [Drosophila mojavensis] gi|195161310|ref|XP_002021511.1| GL26550 [Drosophila persimilis] gi|195168426|ref|XP_002025032.1| GL26831 [Drosophila persimilis] gi|195342652|ref|XP_002037914.1| GM18523 [Drosophila sechellia] gi|195355011|ref|XP_002043987.1| GM13676 [Drosophila sechellia] gi|195386334|ref|XP_002051859.1| GJ17231 [Drosophila virilis] gi|195400691|ref|XP_002058949.1| GJ15308 [Drosophila virilis] gi|195432994|ref|XP_002064500.1| GK23881 [Drosophila willistoni] gi|195447814|ref|XP_002071382.1| GK25162 [Drosophila willistoni] gi|195472777|ref|XP_002088675.1| His3.3A [Drosophila yakuba] gi|195479904|ref|XP_002101068.1| GE17412 [Drosophila yakuba] gi|195576680|ref|XP_002078203.1| GD23319 [Drosophila simulans] gi|198414843|ref|XP_002119783.1| PREDICTED: similar to Histone H3.3B CG8989-PA [Ciona intestinalis] gi|198469150|ref|XP_002134231.1| GA22698 [Drosophila pseudoobscura pseudoobscura] gi|241112266|ref|XP_002399568.1| Core histone H2A/H2B/H3/H4 [Ixodes scapularis] gi|242020435|ref|XP_002430660.1| histone H3.3 [Pediculus humanus corporis] gi|260788404|ref|XP_002589240.1| hypothetical protein BRAFLDRAFT_120760 [Branchiostoma floridae] gi|260801479|ref|XP_002595623.1| hypothetical protein BRAFLDRAFT_117519 [Branchiostoma floridae] gi|291224914|ref|XP_002732446.1| PREDICTED: histone H3.3B-like isoform 1 [Saccoglossus kowalevskii] gi|291224916|ref|XP_002732447.1| PREDICTED: histone H3.3B-like isoform 2 [Saccoglossus kowalevskii] gi|291225982|ref|XP_002732967.1| PREDICTED: histone H3.3B-like [Saccoglossus kowalevskii] gi|291402310|ref|XP_002717527.1| PREDICTED: H3 histone, family 3A [Oryctolagus cuniculus] gi|292621873|ref|XP_002664801.1| PREDICTED: histone H3.3-like isoform 2 [Danio rerio] gi|293352901|ref|XP_002728089.1| PREDICTED: histone H3.3-like [Rattus norvegicus] gi|296196732|ref|XP_002745967.1| PREDICTED: histone H3.3-like isoform 2 [Callithrix jacchus] gi|296203207|ref|XP_002748789.1| PREDICTED: histone H3.3-like isoform 1 [Callithrix jacchus] gi|296214908|ref|XP_002753910.1| PREDICTED: histone H3.3-like isoform 2 [Callithrix jacchus] gi|296228940|ref|XP_002760051.1| PREDICTED: histone H3.3-like isoform 1 [Callithrix jacchus] gi|296230284|ref|XP_002760633.1| PREDICTED: histone H3.3-like isoform 2 [Callithrix jacchus] gi|296230286|ref|XP_002760634.1| PREDICTED: histone H3.3-like isoform 3 [Callithrix jacchus] gi|297273629|ref|XP_002800646.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|297273631|ref|XP_002800647.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|297280664|ref|XP_002801958.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|297280666|ref|XP_002801959.1| PREDICTED: histone H3.3-like [Macaca mulatta] gi|297281559|ref|XP_002802116.1| PREDICTED: histone H3.3-like isoform 2 [Macaca mulatta] gi|297661840|ref|XP_002809431.1| PREDICTED: histone H3.3-like isoform 1 [Pongo abelii] gi|297661844|ref|XP_002809433.1| PREDICTED: histone H3.3-like isoform 3 [Pongo abelii] gi|297661848|ref|XP_002809435.1| PREDICTED: histone H3.3-like isoform 5 [Pongo abelii] gi|297661850|ref|XP_002809436.1| PREDICTED: histone H3.3-like isoform 6 [Pongo abelii] gi|301621375|ref|XP_002940033.1| PREDICTED: histone H3.3 [Xenopus (Silurana) tropicalis] gi|301768993|ref|XP_002919897.1| PREDICTED: histone H3.3-like [Ailuropoda melanoleuca] gi|301782657|ref|XP_002926741.1| PREDICTED: histone H3.3-like [Ailuropoda melanoleuca] gi|311266778|ref|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa] gi|312076177|ref|XP_003140744.1| H3 histone, family 3A [Loa loa] gi|312101016|ref|XP_003149523.1| histone H3 [Loa loa] gi|326930728|ref|XP_003211494.1| PREDICTED: histone H3.3-like [Meleagris gallopavo] gi|327262611|ref|XP_003216117.1| PREDICTED: histone H3.3-like [Anolis carolinensis] gi|327264913|ref|XP_003217253.1| PREDICTED: histone H3.3-like [Anolis carolinensis] gi|327276295|ref|XP_003222905.1| PREDICTED: histone H3.3-like [Anolis carolinensis] gi|328726781|ref|XP_003249043.1| PREDICTED: histone H3.3-like [Acyrthosiphon pisum] gi|328782845|ref|XP_003250201.1| PREDICTED: histone H3.3-like isoform 1 [Apis mellifera] gi|328782848|ref|XP_003250202.1| PREDICTED: histone H3.3-like isoform 2 [Apis mellifera] gi|332228487|ref|XP_003263420.1| PREDICTED: histone H3.3-like isoform 1 [Nomascus leucogenys] gi|332251999|ref|XP_003275139.1| PREDICTED: histone H3.3 isoform 1 [Nomascus leucogenys] gi|332252001|ref|XP_003275140.1| PREDICTED: histone H3.3 isoform 2 [Nomascus leucogenys] gi|332252007|ref|XP_003275143.1| PREDICTED: histone H3.3 isoform 5 [Nomascus leucogenys] gi|332252009|ref|XP_003275144.1| PREDICTED: histone H3.3 isoform 6 [Nomascus leucogenys] gi|332252011|ref|XP_003275145.1| PREDICTED: histone H3.3 isoform 7 [Nomascus leucogenys] gi|332260129|ref|XP_003279138.1| PREDICTED: histone H3.3 isoform 3 [Nomascus leucogenys] gi|332812065|ref|XP_003308826.1| PREDICTED: histone H3.3 isoform 1 [Pan troglodytes] gi|332812069|ref|XP_003339055.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|332812071|ref|XP_003308828.1| PREDICTED: histone H3.3 isoform 3 [Pan troglodytes] gi|332812073|ref|XP_003308830.1| PREDICTED: histone H3.3 isoform 5 [Pan troglodytes] gi|332812077|ref|XP_003339057.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|332849085|ref|XP_003315784.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|340376747|ref|XP_003386893.1| PREDICTED: histone H3.3-like [Amphimedon queenslandica] gi|340724796|ref|XP_003400767.1| PREDICTED: histone H3.3-like [Bombus terrestris] gi|340724804|ref|XP_003400771.1| PREDICTED: histone H3.3 isoform 1 [Bombus terrestris] gi|340724806|ref|XP_003400772.1| PREDICTED: histone H3.3 isoform 2 [Bombus terrestris] gi|340724808|ref|XP_003400773.1| PREDICTED: histone H3.3 isoform 3 [Bombus terrestris] gi|340724810|ref|XP_003400774.1| PREDICTED: histone H3.3 isoform 4 [Bombus terrestris] gi|340724812|ref|XP_003400775.1| PREDICTED: histone H3.3 isoform 5 [Bombus terrestris] gi|340724814|ref|XP_003400776.1| PREDICTED: histone H3.3 isoform 6 [Bombus terrestris] gi|344278391|ref|XP_003410978.1| PREDICTED: histone H3.3-like [Loxodonta africana] gi|344291160|ref|XP_003417304.1| PREDICTED: histone H3.3-like [Loxodonta africana] gi|347966658|ref|XP_003435952.1| AGAP001813-PB [Anopheles gambiae str. PEST] gi|348502319|ref|XP_003438715.1| PREDICTED: histone H3.3-like [Oreochromis niloticus] gi|348502535|ref|XP_003438823.1| PREDICTED: histone H3.3-like [Oreochromis niloticus] gi|348524667|ref|XP_003449844.1| PREDICTED: histone H3.3-like [Oreochromis niloticus] gi|348551304|ref|XP_003461470.1| PREDICTED: histone H3.3-like [Cavia porcellus] gi|348553198|ref|XP_003462414.1| PREDICTED: histone H3.3-like [Cavia porcellus] gi|350398298|ref|XP_003485151.1| PREDICTED: histone H3.3-like [Bombus impatiens] gi|350398312|ref|XP_003485156.1| PREDICTED: histone H3.3-like isoform 1 [Bombus impatiens] gi|350398315|ref|XP_003485157.1| PREDICTED: histone H3.3-like isoform 2 [Bombus impatiens] gi|363746092|ref|XP_003643522.1| PREDICTED: histone H3.3-like [Gallus gallus] gi|380021168|ref|XP_003694444.1| PREDICTED: histone H3.3-like isoform 1 [Apis florea] gi|380021170|ref|XP_003694445.1| PREDICTED: histone H3.3-like isoform 2 [Apis florea] gi|380021172|ref|XP_003694446.1| PREDICTED: histone H3.3-like isoform 1 [Apis florea] gi|380021174|ref|XP_003694447.1| PREDICTED: histone H3.3-like isoform 2 [Apis florea] gi|380021176|ref|XP_003694448.1| PREDICTED: histone H3.3-like isoform 3 [Apis florea] gi|383865267|ref|XP_003708096.1| PREDICTED: histone H3.3-like [Megachile rotundata] gi|383865269|ref|XP_003708097.1| PREDICTED: histone H3.3-like [Megachile rotundata] gi|391329086|ref|XP_003739008.1| PREDICTED: histone H3.3-like [Metaseiulus occidentalis] gi|391348271|ref|XP_003748371.1| PREDICTED: histone H3.3-like [Metaseiulus occidentalis] gi|392332906|ref|XP_003752732.1| PREDICTED: histone H3.3-like [Rattus norvegicus] gi|395531470|ref|XP_003767801.1| PREDICTED: histone H3.3-like [Sarcophilus harrisii] gi|395728954|ref|XP_003775464.1| PREDICTED: histone H3.3-like [Pongo abelii] gi|395825930|ref|XP_003786173.1| PREDICTED: histone H3.3-like [Otolemur garnettii] gi|395836179|ref|XP_003791041.1| PREDICTED: histone H3.3-like [Otolemur garnettii] gi|397484318|ref|XP_003813324.1| PREDICTED: histone H3.3-like isoform 1 [Pan paniscus] gi|397484320|ref|XP_003813325.1| PREDICTED: histone H3.3-like isoform 2 [Pan paniscus] gi|397487800|ref|XP_003814967.1| PREDICTED: histone H3.3-like isoform 1 [Pan paniscus] gi|397487802|ref|XP_003814968.1| PREDICTED: histone H3.3-like isoform 2 [Pan paniscus] gi|397487804|ref|XP_003814969.1| PREDICTED: histone H3.3-like isoform 3 [Pan paniscus] gi|397487806|ref|XP_003814970.1| PREDICTED: histone H3.3-like isoform 4 [Pan paniscus] gi|397487808|ref|XP_003814971.1| PREDICTED: histone H3.3-like isoform 5 [Pan paniscus] gi|397487810|ref|XP_003814972.1| PREDICTED: histone H3.3-like isoform 6 [Pan paniscus] gi|402857049|ref|XP_003893086.1| PREDICTED: histone H3.3 [Papio anubis] gi|402858020|ref|XP_003893529.1| PREDICTED: histone H3.3-like isoform 1 [Papio anubis] gi|402858022|ref|XP_003893530.1| PREDICTED: histone H3.3-like isoform 2 [Papio anubis] gi|402858024|ref|XP_003893531.1| PREDICTED: histone H3.3-like isoform 3 [Papio anubis] gi|402858026|ref|XP_003893532.1| PREDICTED: histone H3.3-like isoform 4 [Papio anubis] gi|402901097|ref|XP_003913493.1| PREDICTED: histone H3.3 isoform 1 [Papio anubis] gi|402901099|ref|XP_003913494.1| PREDICTED: histone H3.3 isoform 2 [Papio anubis] gi|403277380|ref|XP_003930341.1| PREDICTED: histone H3.3 isoform 1 [Saimiri boliviensis boliviensis] gi|403277382|ref|XP_003930342.1| PREDICTED: histone H3.3 isoform 2 [Saimiri boliviensis boliviensis] gi|403277384|ref|XP_003930343.1| PREDICTED: histone H3.3 isoform 3 [Saimiri boliviensis boliviensis] gi|403280542|ref|XP_003931776.1| PREDICTED: histone H3.3 [Saimiri boliviensis boliviensis] gi|410034519|ref|XP_003949752.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|410034521|ref|XP_003949753.1| PREDICTED: histone H3.3 [Pan troglodytes] gi|410895731|ref|XP_003961353.1| PREDICTED: histone H3.3-like [Takifugu rubripes] gi|410914598|ref|XP_003970774.1| PREDICTED: histone H3.3-like [Takifugu rubripes] gi|410928060|ref|XP_003977419.1| PREDICTED: histone H3.3-like [Takifugu rubripes] gi|410981710|ref|XP_003997209.1| PREDICTED: histone H3.3 [Felis catus] gi|410985661|ref|XP_003999137.1| PREDICTED: histone H3.3 [Felis catus] gi|426238462|ref|XP_004013172.1| PREDICTED: histone H3.3 [Ovis aries] gi|426239547|ref|XP_004013682.1| PREDICTED: histone H3.3 [Ovis aries] gi|426333961|ref|XP_004028534.1| PREDICTED: histone H3.3 isoform 1 [Gorilla gorilla gorilla] gi|426333963|ref|XP_004028535.1| PREDICTED: histone H3.3 isoform 2 [Gorilla gorilla gorilla] gi|426333965|ref|XP_004028536.1| PREDICTED: histone H3.3 isoform 3 [Gorilla gorilla gorilla] gi|426333967|ref|XP_004028537.1| PREDICTED: histone H3.3 isoform 4 [Gorilla gorilla gorilla] gi|426333969|ref|XP_004028538.1| PREDICTED: histone H3.3 isoform 5 [Gorilla gorilla gorilla] gi|426333971|ref|XP_004028539.1| PREDICTED: histone H3.3 isoform 6 [Gorilla gorilla gorilla] gi|426333973|ref|XP_004028540.1| PREDICTED: histone H3.3 isoform 7 [Gorilla gorilla gorilla] gi|426333975|ref|XP_004028541.1| PREDICTED: histone H3.3 isoform 8 [Gorilla gorilla gorilla] gi|426346816|ref|XP_004041067.1| PREDICTED: histone H3.3 [Gorilla gorilla gorilla] gi|432923025|ref|XP_004080398.1| PREDICTED: histone H3.3-like [Oryzias latipes] gi|432948638|ref|XP_004084106.1| PREDICTED: histone H3.3-like [Oryzias latipes] gi|441612528|ref|XP_004088086.1| PREDICTED: histone H3.3 [Nomascus leucogenys] gi|441622394|ref|XP_004088836.1| PREDICTED: histone H3.3-like isoform 2 [Nomascus leucogenys] gi|441622397|ref|XP_004088837.1| PREDICTED: histone H3.3-like isoform 3 [Nomascus leucogenys] gi|55977042|sp|P84245.2|H33_RAT RecName: Full=Histone H3.3 gi|55977062|sp|P84243.2|H33_HUMAN RecName: Full=Histone H3.3 gi|55977063|sp|P84244.2|H33_MOUSE RecName: Full=Histone H3.3 gi|55977064|sp|P84246.2|H33_RABIT RecName: Full=Histone H3.3 gi|55977065|sp|P84247.2|H33_CHICK RecName: Full=Histone H3.3; AltName: Full=H3.3A/B; AltName: Full=Histone H3 class II gi|55977066|sp|P84248.2|H33_SPISO RecName: Full=Histone H3.3 gi|55977067|sp|P84249.2|H33_DROME RecName: Full=Histone H3.3; AltName: Full=H3.3Q; AltName: Full=H3.A/B gi|55977068|sp|P84250.2|H33_DROHY RecName: Full=Histone H3.3; AltName: Full=H3.A/B gi|56404321|sp|Q71LE2.3|H33_PIG RecName: Full=Histone H3.3 gi|75040237|sp|Q5E9F8.3|H33_BOVIN RecName: Full=Histone H3.3 gi|82237558|sp|Q6P823.3|H33_XENTR RecName: Full=Histone H3.3 gi|82237785|sp|Q6PI20.3|H33_DANRE RecName: Full=Histone H3.3 gi|82237787|sp|Q6PI79.3|H33_XENLA RecName: Full=Histone H3.3 gi|411024500|pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In Complex With Its Chaperone Daxx gi|10441988|gb|AAG17271.1|AF218029_1 unknown [Homo sapiens] gi|18643343|gb|AAL76273.1|AF469469_1 histone H3.3A [Sus scrofa] gi|1568|emb|CAA36179.1| unnamed protein product [Oryctolagus cuniculus] gi|8046|emb|CAA37819.1| Histone H3.3Q [Drosophila melanogaster] gi|51198|emb|CAA31940.1| unnamed protein product [Mus musculus] gi|63480|emb|CAA68458.1| unnamed protein product [Gallus gallus] gi|161190|gb|AAA29965.1| histone H3 [Spisula solidissima] gi|211853|gb|AAA48794.1| histone 3.3 [Gallus gallus] gi|306848|gb|AAA52653.1| H3.3 histone [Homo sapiens] gi|306849|gb|AAA52654.1| H3.3 histone [Homo sapiens] gi|313319|emb|CAA52035.1| histon H3 [Rattus norvegicus] gi|761716|emb|CAA88778.1| histone H3.3 [Homo sapiens] gi|963024|emb|CAA57078.1| histone H3.3 [Drosophila hydei] gi|963026|emb|CAA57081.1| histone H3.3 [Drosophila hydei] gi|963029|emb|CAA57080.1| histone H3.3 [Drosophila melanogaster] gi|963031|emb|CAA57077.1| histone H3.3 [Drosophila melanogaster] gi|1006654|emb|CAA57712.1| histone H3.3A variant [Drosophila melanogaster] gi|1838986|emb|CAB06625.1| histone H3.3A [Mus musculus] gi|7291014|gb|AAF46452.1| histone H3.3B, isoform A [Drosophila melanogaster] gi|7296940|gb|AAF52213.1| histone H3.3A, isoform A [Drosophila melanogaster] gi|12654577|gb|AAH01124.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|12805577|gb|AAH02268.1| H3 histone, family 3A [Mus musculus] gi|12833274|dbj|BAB22464.1| unnamed protein product [Mus musculus] gi|13676330|gb|AAH06497.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|15215164|gb|AAH12687.1| H3 histone, family 3A [Mus musculus] gi|15215436|gb|AAH12813.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|16580107|gb|AAK61362.1| histone 3A [Anopheles gambiae] gi|17028475|gb|AAH17558.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|17945243|gb|AAL48679.1| RE14004p [Drosophila melanogaster] gi|20810210|gb|AAH29405.1| H3 histone, family 3A [Homo sapiens] gi|21392000|gb|AAM48354.1| LD17717p [Drosophila melanogaster] gi|21429128|gb|AAM50283.1| RE21618p [Drosophila melanogaster] gi|22831984|gb|AAN09245.1| histone H3.3B, isoform B [Drosophila melanogaster] gi|22902309|gb|AAH37730.1| H3 histone, family 3B [Mus musculus] gi|25058578|gb|AAH38989.1| H3 histone, family 3A [Homo sapiens] gi|26332330|dbj|BAC29895.1| unnamed protein product [Mus musculus] gi|26353000|dbj|BAC40130.1| unnamed protein product [Mus musculus] gi|27370860|gb|AAH41218.1| MGC52708 protein [Xenopus laevis] gi|27503244|gb|AAH42290.1| H3f3b-prov protein [Xenopus laevis] gi|27769186|gb|AAH42309.1| H3f3a-prov protein [Xenopus laevis] gi|28381593|gb|AAO41645.1| histone H3.3B, isoform C [Drosophila melanogaster] gi|29124583|gb|AAH49017.1| Zgc:56418 [Danio rerio] gi|30173649|gb|EAA01174.2| AGAP001813-PA [Anopheles gambiae str. PEST] gi|31873260|emb|CAD97621.1| hypothetical protein [Homo sapiens] gi|34783839|gb|AAH57444.1| H3 histone, family 3C [Danio rerio] gi|38047789|gb|AAR09797.1| similar to Drosophila melanogaster His3.3A, partial [Drosophila yakuba] gi|38174124|gb|AAH61408.1| H3 histone, family 3B (H3.3B) [Xenopus (Silurana) tropicalis] gi|38648851|gb|AAH63159.1| H3 histone, family 3B [Rattus norvegicus] gi|47215774|emb|CAG02570.1| unnamed protein product [Tetraodon nigroviridis] gi|47216831|emb|CAG02722.1| unnamed protein product [Tetraodon nigroviridis] gi|47224861|emb|CAG06431.1| unnamed protein product [Tetraodon nigroviridis] gi|47506869|gb|AAH70966.1| MGC78769 protein [Xenopus laevis] gi|48290305|emb|CAF25046.1| histone H3.3 [Oikopleura dioica] gi|48734917|gb|AAH71406.1| H3 histone, family 3A [Danio rerio] gi|49522764|gb|AAH74158.1| MGC81913 protein [Xenopus laevis] gi|49903578|gb|AAH77035.1| MGC89877 protein [Xenopus (Silurana) tropicalis] gi|50926784|gb|AAH78759.1| H3 histone, family 3B [Rattus norvegicus] gi|51814315|gb|AAU09479.1| GekBS038P [Gekko japonicus] gi|51858469|gb|AAH81560.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|53734121|gb|AAH83353.1| H3 histone, family 3A [Mus musculus] gi|54644282|gb|EAL33023.1| GA19158 [Drosophila pseudoobscura pseudoobscura] gi|55778406|gb|AAH86580.1| H3f3b protein [Rattus norvegicus] gi|56388767|gb|AAH87725.1| H3f3b protein [Rattus norvegicus] gi|57033178|gb|AAH88835.1| H3 histone, family 3A [Mus musculus] gi|59858289|gb|AAX08979.1| H3 histone, family 3A [Bos taurus] gi|60392147|gb|AAX19363.1| replacement histone H3.3 [Ruditapes philippinarum] gi|62027558|gb|AAH92043.1| H3 histone, family 3B [Mus musculus] gi|62202237|gb|AAH92854.1| Zgc:110292 [Danio rerio] gi|63102453|gb|AAH95447.1| H3 histone, family 3A [Homo sapiens] gi|73586640|gb|AAI03072.1| H3F3A protein [Bos taurus] gi|74139378|dbj|BAE40831.1| unnamed protein product [Mus musculus] gi|74139993|dbj|BAE31831.1| unnamed protein product [Mus musculus] gi|74141311|dbj|BAE35953.1| unnamed protein product [Mus musculus] gi|74141850|dbj|BAE40995.1| unnamed protein product [Mus musculus] gi|74142224|dbj|BAE31877.1| unnamed protein product [Mus musculus] gi|74142363|dbj|BAE31939.1| unnamed protein product [Mus musculus] gi|74151792|dbj|BAE29685.1| unnamed protein product [Mus musculus] gi|74152073|dbj|BAE32069.1| unnamed protein product [Mus musculus] gi|74179935|dbj|BAE36524.1| unnamed protein product [Mus musculus] gi|74181381|dbj|BAE29966.1| unnamed protein product [Mus musculus] gi|74187463|dbj|BAE36694.1| unnamed protein product [Mus musculus] gi|74189303|dbj|BAE22687.1| unnamed protein product [Mus musculus] gi|74190333|dbj|BAE37253.1| unnamed protein product [Mus musculus] gi|74191357|dbj|BAE30261.1| unnamed protein product [Mus musculus] gi|74191472|dbj|BAE30314.1| unnamed protein product [Mus musculus] gi|74196024|dbj|BAE30566.1| unnamed protein product [Mus musculus] gi|74196068|dbj|BAE30586.1| unnamed protein product [Mus musculus] gi|74196074|dbj|BAE30589.1| unnamed protein product [Mus musculus] gi|74198107|dbj|BAE35232.1| unnamed protein product [Mus musculus] gi|74204175|dbj|BAE39850.1| unnamed protein product [Mus musculus] gi|74204268|dbj|BAE39892.1| unnamed protein product [Mus musculus] gi|74204718|dbj|BAE35427.1| unnamed protein product [Mus musculus] gi|74207125|dbj|BAE30757.1| unnamed protein product [Mus musculus] gi|74211975|dbj|BAE40157.1| unnamed protein product [Mus musculus] gi|74214504|dbj|BAE31102.1| unnamed protein product [Mus musculus] gi|74214793|dbj|BAE31231.1| unnamed protein product [Mus musculus] gi|74214797|dbj|BAE31233.1| unnamed protein product [Mus musculus] gi|74219633|dbj|BAE29584.1| unnamed protein product [Mus musculus] gi|74219635|dbj|BAE29585.1| unnamed protein product [Mus musculus] gi|74219922|dbj|BAE40542.1| unnamed protein product [Mus musculus] gi|74220794|dbj|BAE31366.1| unnamed protein product [Mus musculus] gi|74225316|dbj|BAE31590.1| unnamed protein product [Mus musculus] gi|74225515|dbj|BAE31666.1| unnamed protein product [Mus musculus] gi|76780124|gb|AAI06303.1| MGC52708 protein [Xenopus laevis] gi|76780245|gb|AAI06178.1| H3 histone, family 3A [Mus musculus] gi|80477731|gb|AAI08702.1| H3 histone, family 3B (H3.3B) [Homo sapiens] gi|87248155|gb|ABD36130.1| h3 histone family 3a [Bombyx mori] gi|90819998|gb|ABD98756.1| putative H3 histone, family 3A [Graphocephala atropunctata] gi|95769331|gb|ABF57428.1| H3 histone, family 3B [Bos taurus] gi|108878058|gb|EAT42283.1| AAEL006158-PA [Aedes aegypti] gi|109716251|gb|ABG43104.1| histone H3 [Pectinaria gouldii] gi|115530764|emb|CAL49400.1| H3 histone [Xenopus (Silurana) tropicalis] gi|116063361|gb|AAI23121.1| MGC52708 protein [Xenopus laevis] gi|117645208|emb|CAL38070.1| hypothetical protein [synthetic construct] gi|119590176|gb|EAW69770.1| H3 histone, family 3A, isoform CRA_a [Homo sapiens] gi|119590177|gb|EAW69771.1| H3 histone, family 3A, isoform CRA_a [Homo sapiens] gi|119590178|gb|EAW69772.1| H3 histone, family 3A, isoform CRA_a [Homo sapiens] gi|119590179|gb|EAW69773.1| H3 histone, family 3A, isoform CRA_a [Homo sapiens] gi|119609723|gb|EAW89317.1| H3 histone, family 3B (H3.3B), isoform CRA_a [Homo sapiens] gi|119609724|gb|EAW89318.1| H3 histone, family 3B (H3.3B), isoform CRA_a [Homo sapiens] gi|119609725|gb|EAW89319.1| H3 histone, family 3B (H3.3B), isoform CRA_a [Homo sapiens] gi|121543839|gb|ABM55584.1| putative histone H3 [Maconellicoccus hirsutus] gi|121543855|gb|ABM55592.1| putative H3 histone, family 3B [Maconellicoccus hirsutus] gi|123984391|gb|ABM83541.1| H3 histone, family 3A [synthetic construct] gi|123998359|gb|ABM86781.1| H3 histone, family 3A [synthetic construct] gi|126635091|emb|CAK32534.1| histone H3.3 [Oikopleura dioica] gi|134025948|gb|AAI34735.1| H3 histone, family 3A [Bos taurus] gi|146741398|dbj|BAF62355.1| H3 histone, family 3A [Pan troglodytes verus] gi|148681198|gb|EDL13145.1| mCG19829 [Mus musculus] gi|148702598|gb|EDL34545.1| mCG6618 [Mus musculus] gi|149040876|gb|EDL94833.1| rCG20294, isoform CRA_a [Rattus norvegicus] gi|149054820|gb|EDM06637.1| H3 histone, family 3B, isoform CRA_a [Rattus norvegicus] gi|149212750|gb|ABR22618.1| histone 3 [Aplysia californica] gi|149689030|gb|ABR27830.1| H3 histone family 3B [Triatoma infestans] gi|156229982|gb|AAI52135.1| Zgc:64222 protein [Danio rerio] gi|158253878|gb|AAI54270.1| Zgc:56418 protein [Danio rerio] gi|158593674|gb|EDP32269.1| Histone H3.3, putative [Brugia malayi] gi|158595095|gb|EDP33668.1| Histone H3.3, putative [Brugia malayi] gi|160774424|gb|AAI55446.1| h3f3b protein [Xenopus (Silurana) tropicalis] gi|162415918|gb|ABX89280.1| histone cluster 1, H3a (predicted) [Papio anubis] gi|163915477|gb|AAI57317.1| MGC89877 protein [Xenopus (Silurana) tropicalis] gi|163916070|gb|AAI57315.1| h3f3b protein [Xenopus (Silurana) tropicalis] gi|165971617|gb|AAI58616.1| H3f3b protein [Rattus norvegicus] gi|166797097|gb|AAI59440.1| H3f3b protein [Rattus norvegicus] gi|167774103|gb|ABZ92486.1| H3 histone, family 3B (H3.3B) [synthetic construct] gi|167881403|gb|EDS44786.1| histone H3.3 type 2 [Culex quinquefasciatus] gi|182889676|gb|AAI65500.1| H3f3c protein [Danio rerio] gi|189053224|dbj|BAG34846.1| unnamed protein product [Homo sapiens] gi|190616692|gb|EDV32216.1| GF15720 [Drosophila ananassae] gi|190618238|gb|EDV33762.1| GF19171 [Drosophila ananassae] gi|190649015|gb|EDV46293.1| GG19000 [Drosophila erecta] gi|190660632|gb|EDV57824.1| GG25048 [Drosophila erecta] gi|193893232|gb|EDV92098.1| GH24723 [Drosophila grimshawi] gi|193905021|gb|EDW03888.1| GH11489 [Drosophila grimshawi] gi|193908547|gb|EDW07414.1| GI14879 [Drosophila mojavensis] gi|193912260|gb|EDW11127.1| GI16984 [Drosophila mojavensis] gi|194103311|gb|EDW25354.1| GL26550 [Drosophila persimilis] gi|194108477|gb|EDW30520.1| GL26831 [Drosophila persimilis] gi|194129232|gb|EDW51275.1| GM13676 [Drosophila sechellia] gi|194132764|gb|EDW54332.1| GM18523 [Drosophila sechellia] gi|194141601|gb|EDW58018.1| GJ15308 [Drosophila virilis] gi|194148316|gb|EDW64014.1| GJ17231 [Drosophila virilis] gi|194160585|gb|EDW75486.1| GK23881 [Drosophila willistoni] gi|194167467|gb|EDW82368.1| GK25162 [Drosophila willistoni] gi|194174776|gb|EDW88387.1| His3.3A [Drosophila yakuba] gi|194188592|gb|EDX02176.1| GE17412 [Drosophila yakuba] gi|194190212|gb|EDX03788.1| GD23319 [Drosophila simulans] gi|197127820|gb|ACH44318.1| putative H3 histone family 3A [Taeniopygia guttata] gi|197127821|gb|ACH44319.1| putative H3 histone family 3A [Taeniopygia guttata] gi|197129762|gb|ACH46260.1| putative H3 histone family 3B variant 2 [Taeniopygia guttata] gi|197129763|gb|ACH46261.1| putative H3 histone family 3B variant 2 [Taeniopygia guttata] gi|197129765|gb|ACH46263.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129766|gb|ACH46264.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129767|gb|ACH46265.1| putative H3 histone family 3B variant 2 [Taeniopygia guttata] gi|197129768|gb|ACH46266.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129769|gb|ACH46267.1| putative H3 histone family 3B variant 2 [Taeniopygia guttata] gi|197129770|gb|ACH46268.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129771|gb|ACH46269.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129772|gb|ACH46270.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129840|gb|ACH46338.1| putative H3 histone family 3B variant 1 [Taeniopygia guttata] gi|197129877|gb|ACH46375.1| putative H3 histone family 3A [Taeniopygia guttata] gi|197632043|gb|ACH70745.1| H3 histone family 3A [Salmo salar] gi|198146737|gb|EDY72858.1| GA22698 [Drosophila pseudoobscura pseudoobscura] gi|208966478|dbj|BAG73253.1| Histone H3.3 [synthetic construct] gi|209151288|gb|ACI33069.1| Histone H3.3 [Salmo salar] gi|209155450|gb|ACI33957.1| Histone H3.3 [Salmo salar] gi|209155988|gb|ACI34226.1| Histone H3.3 [Salmo salar] gi|209732440|gb|ACI67089.1| Histone H3.3 [Salmo salar] gi|209733828|gb|ACI67783.1| Histone H3.3 [Salmo salar] gi|209735012|gb|ACI68375.1| Histone H3.3 [Salmo salar] gi|209736882|gb|ACI69310.1| Histone H3.3 [Salmo salar] gi|209738400|gb|ACI70069.1| Histone H3.3 [Salmo salar] gi|212515835|gb|EEB17922.1| histone H3.3 [Pediculus humanus corporis] gi|215493015|gb|EEC02656.1| Core histone H2A/H2B/H3/H4 [Ixodes scapularis] gi|220950434|gb|ACL87760.1| His3.3A-PA [synthetic construct] gi|220959296|gb|ACL92191.1| His3.3A-PA [synthetic construct] gi|220959794|gb|ACL92440.1| His3.3A-PA [synthetic construct] gi|221219278|gb|ACM08300.1| Histone H3.3 [Salmo salar] gi|221220000|gb|ACM08661.1| Histone H3.3 [Salmo salar] gi|221220612|gb|ACM08967.1| Histone H3.3 [Salmo salar] gi|221221382|gb|ACM09352.1| Histone H3.3 [Salmo salar] gi|221222238|gb|ACM09780.1| Histone H3.3 [Salmo salar] gi|223646890|gb|ACN10203.1| Histone H3.3 [Salmo salar] gi|223646976|gb|ACN10246.1| Histone H3.3 [Salmo salar] gi|223672751|gb|ACN12557.1| Histone H3.3 [Salmo salar] gi|223672839|gb|ACN12601.1| Histone H3.3 [Salmo salar] gi|224924434|gb|ACN69167.1| H3 histone family 3A [Stomoxys calcitrans] gi|225703498|gb|ACO07595.1| Histone H3.3 [Oncorhynchus mykiss] gi|225706860|gb|ACO09276.1| Histone H3.3 [Osmerus mordax] gi|225706870|gb|ACO09281.1| Histone H3.3 [Osmerus mordax] gi|225713870|gb|ACO12781.1| Histone H3.3 [Lepeophtheirus salmonis] gi|225713976|gb|ACO12834.1| Histone H3.3 [Lepeophtheirus salmonis] gi|225718188|gb|ACO14940.1| Histone H3.3 [Caligus clemensi] gi|225718784|gb|ACO15238.1| Histone H3.3 [Caligus clemensi] gi|225719256|gb|ACO15474.1| Histone H3.3 [Caligus clemensi] gi|229274415|gb|EEN45251.1| hypothetical protein BRAFLDRAFT_120760 [Branchiostoma floridae] gi|229280870|gb|EEN51635.1| hypothetical protein BRAFLDRAFT_117519 [Branchiostoma floridae] gi|229367186|gb|ACQ58573.1| Histone H3.3 [Anoplopoma fimbria] gi|261335966|emb|CBH09251.1| putative Histone H3 [Heliconius melpomene] gi|261860160|dbj|BAI46602.1| H3 histone, family 3A [synthetic construct] gi|270011381|gb|EFA07829.1| hypothetical protein TcasGA2_TC005398 [Tribolium castaneum] gi|281350042|gb|EFB25626.1| hypothetical protein PANDA_008580 [Ailuropoda melanoleuca] gi|281354067|gb|EFB29651.1| hypothetical protein PANDA_016437 [Ailuropoda melanoleuca] gi|283468930|emb|CAP53904.1| histone H3.3 [Xenoturbella bocki] gi|283468934|emb|CAP57915.1| histone H3.3 [Xenoturbella bocki] gi|289743147|gb|ADD20321.1| H3 histone family 3A [Glossina morsitans morsitans] gi|289743149|gb|ADD20322.1| H3 histone family 3A [Glossina morsitans morsitans] gi|289743155|gb|ADD20325.1| H3 histone family 3A [Glossina morsitans morsitans] gi|290562447|gb|ADD38620.1| Histone H3.3 [Lepeophtheirus salmonis] gi|290562748|gb|ADD38769.1| Histone H3.3 [Lepeophtheirus salmonis] gi|291461559|dbj|BAI83414.1| histone H3 [Parasteatoda tepidariorum] gi|296476022|tpg|DAA18137.1| TPA: histone H3.3B-like [Bos taurus] gi|296479254|tpg|DAA21369.1| TPA: histone H3.3 [Bos taurus] gi|303659907|gb|ADM15975.1| Histone H3.3 [Salmo salar] gi|303665913|gb|ADM16206.1| Histone H3.3 [Salmo salar] gi|307095090|gb|ADN29851.1| histone H3.3 [Triatoma matogrossensis] gi|307169357|gb|EFN62078.1| Histone H3.3 [Camponotus floridanus] gi|307204447|gb|EFN83154.1| Histone H3.3 [Harpegnathos saltator] gi|307755311|gb|EFO14545.1| histone H3 [Loa loa] gi|307764087|gb|EFO23321.1| H3 histone, family 3A [Loa loa] gi|308321393|gb|ADO27848.1| histone h3.3 [Ictalurus furcatus] gi|308323577|gb|ADO28924.1| histone h3.3 [Ictalurus punctatus] gi|312371651|gb|EFR19783.1| hypothetical protein AND_30674 [Anopheles darlingi] gi|313220014|emb|CBY30878.1| unnamed protein product [Oikopleura dioica] gi|313234149|emb|CBY10218.1| unnamed protein product [Oikopleura dioica] gi|313235983|emb|CBY25129.1| unnamed protein product [Oikopleura dioica] gi|317419125|emb|CBN81162.1| Histone H3 [Dicentrarchus labrax] gi|317419264|emb|CBN81301.1| Uncharacterized protein [Dicentrarchus labrax] gi|321463426|gb|EFX74442.1| hypothetical protein DAPPUDRAFT_231307 [Daphnia pulex] gi|324509917|gb|ADY44152.1| Histone H3.3 [Ascaris suum] gi|325302694|tpg|DAA34575.1| TPA_exp: H3 histone family 3A [Amblyomma variegatum] gi|332028951|gb|EGI68969.1| Histone H3.3 [Acromyrmex echinatior] gi|332028952|gb|EGI68970.1| Histone H3.3 [Acromyrmex echinatior] gi|332375154|gb|AEE62718.1| unknown [Dendroctonus ponderosae] gi|333469959|gb|EGK97461.1| AGAP001813-PB [Anopheles gambiae str. PEST] gi|335775411|gb|AEH58563.1| histone H3.3-like protein [Equus caballus] gi|336087732|emb|CBM82511.1| histone H3.3 protein [Balanoglossus clavigerus] gi|343458983|gb|AEM37650.1| histone H3 [Epinephelus bruneus] gi|343959538|dbj|BAK63626.1| histone H3.3 [Pan troglodytes] gi|351703433|gb|EHB06352.1| Histone H3.3 [Heterocephalus glaber] gi|351707846|gb|EHB10765.1| Histone H3.3 [Heterocephalus glaber] gi|355558716|gb|EHH15496.1| hypothetical protein EGK_01597 [Macaca mulatta] gi|355568926|gb|EHH25207.1| hypothetical protein EGK_08989 [Macaca mulatta] gi|355745875|gb|EHH50500.1| hypothetical protein EGM_01343 [Macaca fascicularis] gi|355760552|gb|EHH61688.1| hypothetical protein EGM_19729 [Macaca fascicularis] gi|357627942|gb|EHJ77454.1| hypothetical protein KGM_11308 [Danaus plexippus] gi|384939288|gb|AFI33249.1| histone H3.3 [Macaca mulatta] gi|387016374|gb|AFJ50306.1| Histone H3.3 [Crotalus adamanteus] gi|387016376|gb|AFJ50307.1| Histone H3.3 [Crotalus adamanteus] gi|387016378|gb|AFJ50308.1| H3 histone, family 3A [Crotalus adamanteus] gi|387541660|gb|AFJ71457.1| histone H3.3 [Macaca mulatta] gi|389609103|dbj|BAM18163.1| histone H3.3B [Papilio xuthus] gi|389611069|dbj|BAM19145.1| histone H3.3B [Papilio polytes] gi|392881652|gb|AFM89658.1| histone H33 [Callorhinchus milii] gi|402588820|gb|EJW82753.1| histone H3 [Wuchereria bancrofti] gi|402593333|gb|EJW87260.1| histone H3 [Wuchereria bancrofti] gi|405947928|gb|EKC17910.1| Histone H3.3 [Crassostrea gigas] gi|410220188|gb|JAA07313.1| H3 histone, family 3A [Pan troglodytes] gi|410220190|gb|JAA07314.1| H3 histone, family 3A [Pan troglodytes] gi|410303558|gb|JAA30379.1| H3 histone, family 3A [Pan troglodytes] gi|417396085|gb|JAA45076.1| Putative histone h3.3-like protein [Desmodus rotundus] gi|417515874|gb|JAA53742.1| histone H3.3 [Sus scrofa] gi|427786365|gb|JAA58634.1| Putative family 3b.1 [Rhipicephalus pulchellus] gi|431908767|gb|ELK12359.1| Histone H3.3 [Pteropus alecto] gi|440213373|gb|AGB92618.1| histone H3.3A, isoform C [Drosophila melanogaster] gi|440213374|gb|AAN10526.2| histone H3.3A, isoform D [Drosophila melanogaster] gi|440216577|gb|AGB95217.1| histone H3.3B, isoform D [Drosophila melanogaster] gi|440896848|gb|ELR48666.1| hypothetical protein M91_05641 [Bos grunniens mutus] gi|440898503|gb|ELR49990.1| Histone H3.3 [Bos grunniens mutus] gi|442747111|gb|JAA65715.1| Putative histones h3 and h4 [Ixodes ricinus] gi|443429390|gb|AGC92675.1| Histone H3.3-like protein [Heliconius erato] gi|443692090|gb|ELT93764.1| hypothetical protein CAPTEDRAFT_152257 [Capitella teleta] gi|444727830|gb|ELW68308.1| Histone H3.3 [Tupaia chinensis] Back     alignment and taxonomy information
 Score =  258 bits (660), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/136 (97%), Positives = 132/136 (97%), Gaps = 4/136 (2%)

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTE 56
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR    TVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 57  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 117 MPKDIQLARRIRGERA 132
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136




Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334359125|pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.3 gi|334359129|pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone Variant H3.3 Back     alignment and taxonomy information
>gi|225703532|gb|ACO07612.1| Histone H3.3 [Oncorhynchus mykiss] Back     alignment and taxonomy information
>gi|256086246|ref|XP_002579313.1| histone H3 [Schistosoma mansoni] gi|56753077|gb|AAW24748.1| SJCHGC01198 protein [Schistosoma japonicum] gi|226475830|emb|CAX72005.1| Histone H3.3 [Schistosoma japonicum] gi|226475832|emb|CAX72006.1| Histone H3.3 [Schistosoma japonicum] gi|226475834|emb|CAX72007.1| Histone H3.3 [Schistosoma japonicum] gi|226475836|emb|CAX72008.1| Histone H3.3 [Schistosoma japonicum] gi|226475838|emb|CAX72009.1| Histone H3.3 [Schistosoma japonicum] gi|226475840|emb|CAX72010.1| Histone H3.3 [Schistosoma japonicum] gi|226475842|emb|CAX72011.1| Histone H3.3 [Schistosoma japonicum] gi|226475844|emb|CAX72012.1| Histone H3.3 [Schistosoma japonicum] gi|226479668|emb|CAX78697.1| Histone H3.3 [Schistosoma japonicum] gi|226479670|emb|CAX78698.1| Histone H3.3 [Schistosoma japonicum] gi|226479674|emb|CAX78700.1| Histone H3.3 [Schistosoma japonicum] gi|226479676|emb|CAX78701.1| Histone H3.3 [Schistosoma japonicum] gi|226479678|emb|CAX78702.1| Histone H3.3 [Schistosoma japonicum] gi|226479680|emb|CAX78703.1| Histone H3.3 [Schistosoma japonicum] gi|226479682|emb|CAX78704.1| Histone H3.3 [Schistosoma japonicum] gi|226479684|emb|CAX78705.1| Histone H3.3 [Schistosoma japonicum] gi|226479686|emb|CAX78706.1| Histone H3.3 [Schistosoma japonicum] gi|226479688|emb|CAX78707.1| Histone H3.3 [Schistosoma japonicum] gi|226479690|emb|CAX78708.1| Histone H3.3 [Schistosoma japonicum] gi|226479692|emb|CAX78709.1| Histone H3.3 [Schistosoma japonicum] gi|226479694|emb|CAX78710.1| Histone H3.3 [Schistosoma japonicum] gi|226479696|emb|CAX78711.1| Histone H3.3 [Schistosoma japonicum] gi|226479698|emb|CAX78712.1| Histone H3.3 [Schistosoma japonicum] gi|226479700|emb|CAX78713.1| Histone H3.3 [Schistosoma japonicum] gi|226479702|emb|CAX78714.1| Histone H3.3 [Schistosoma japonicum] gi|226479704|emb|CAX78715.1| Histone H3.3 [Schistosoma japonicum] gi|226479708|emb|CAX78716.1| Histone H3.3 [Schistosoma japonicum] gi|226485525|emb|CAX75182.1| Histone H3.3 [Schistosoma japonicum] gi|226485527|emb|CAX75183.1| Histone H3.3 [Schistosoma japonicum] gi|226485529|emb|CAX75184.1| Histone H3.3 [Schistosoma japonicum] gi|226485531|emb|CAX75185.1| Histone H3.3 [Schistosoma japonicum] gi|238664740|emb|CAZ35552.1| histone H3, putative [Schistosoma mansoni] gi|349935962|dbj|GAA29599.1| histone H3 [Clonorchis sinensis] Back     alignment and taxonomy information
>gi|307204446|gb|EFN83153.1| Histone H3.3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|225704818|gb|ACO08255.1| Histone H3.3 [Oncorhynchus mykiss] Back     alignment and taxonomy information
>gi|45384744|gb|AAS59415.1| histone H3.3B [Chinchilla lanigera] Back     alignment and taxonomy information
>gi|221221048|gb|ACM09185.1| Histone H3.3 [Salmo salar] Back     alignment and taxonomy information
>gi|126697402|gb|ABO26658.1| histone H3 [Haliotis discus discus] gi|208657743|gb|ACI30168.1| H3 histone family 3A [Anopheles darlingi] Back     alignment and taxonomy information
>gi|189053462|dbj|BAG35628.1| unnamed protein product [Homo sapiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query132
FB|FBgn0014857136 His3.3A "Histone H3.3A" [Droso 1.0 0.970 0.970 3e-62
FB|FBgn0004828136 His3.3B "Histone H3.3B" [Droso 1.0 0.970 0.970 3e-62
UNIPROTKB|P84247136 H3-IX "Histone H3.3" [Gallus g 1.0 0.970 0.970 3e-62
UNIPROTKB|Q5E9F8136 H3F3A "Histone H3.3" [Bos taur 1.0 0.970 0.970 3e-62
UNIPROTKB|E2R6K5136 H3F3B "Histone H3" [Canis lupu 1.0 0.970 0.970 3e-62
UNIPROTKB|P84243136 H3F3A "Histone H3.3" [Homo sap 1.0 0.970 0.970 3e-62
UNIPROTKB|Q71LE2136 H3F3A "Histone H3.3" [Sus scro 1.0 0.970 0.970 3e-62
RGD|2319910136 H3f3a "H3 histone, family 3A" 1.0 0.970 0.970 3e-62
RGD|621095136 H3f3b "H3 histone, family 3B" 1.0 0.970 0.970 3e-62
ZFIN|ZDB-GENE-050417-65137 h3f3b.1 "H3 histone, family 3B 1.0 0.963 0.963 4.8e-62
FB|FBgn0014857 His3.3A "Histone H3.3A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 132/136 (97%), Positives = 132/136 (97%)

Query:     1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTE 56
             MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR    TVALREIRRYQKSTE
Sbjct:     1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query:    57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
             LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query:   117 MPKDIQLARRIRGERA 132
             MPKDIQLARRIRGERA
Sbjct:   121 MPKDIQLARRIRGERA 136




GO:0006333 "chromatin assembly or disassembly" evidence=ISS
GO:0000786 "nucleosome" evidence=ISS
GO:0003677 "DNA binding" evidence=ISS
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0007155 "cell adhesion" evidence=IMP
GO:0046982 "protein heterodimerization activity" evidence=IEA
GO:0006334 "nucleosome assembly" evidence=IEA
GO:0005700 "polytene chromosome" evidence=IDA
GO:0007140 "male meiosis" evidence=IGI
FB|FBgn0004828 His3.3B "Histone H3.3B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P84247 H3-IX "Histone H3.3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9F8 H3F3A "Histone H3.3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6K5 H3F3B "Histone H3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P84243 H3F3A "Histone H3.3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q71LE2 H3F3A "Histone H3.3" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|2319910 H3f3a "H3 histone, family 3A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|621095 H3f3b "H3 histone, family 3B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-65 h3f3b.1 "H3 histone, family 3B.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P84235H3_PLADUNo assigned EC number0.94111.00.9705N/AN/A
P84234H32_ONCMYNo assigned EC number0.94111.00.9705N/AN/A
P84237H3_TIGCANo assigned EC number0.94111.00.9705N/AN/A
P84236H3_DROHYNo assigned EC number0.94111.00.9705N/AN/A
P84231H32_ICTBUNo assigned EC number0.94111.00.9705N/AN/A
Q71DI3H32_HUMANNo assigned EC number0.94111.00.9705yesN/A
P84233H32_XENLANo assigned EC number0.94111.00.9705N/AN/A
P84232H32_PORAFNo assigned EC number0.94111.00.9705N/AN/A
Q8WSF1H33_TRIPSNo assigned EC number0.96321.00.9705N/AN/A
Q6LCK1H32_BRANANo assigned EC number0.92641.00.9705N/AN/A
Q64400H32_CRILONo assigned EC number0.93381.00.9705N/AN/A
P84239H3_URECANo assigned EC number0.94111.00.9705N/AN/A
P84238H3_CHITHNo assigned EC number0.94111.00.9705N/AN/A
Q10453H331_CAEELNo assigned EC number0.96321.00.9705yesN/A
A5PK61H3C_BOVINNo assigned EC number0.93381.00.9705yesN/A
Q6PI79H33_XENLANo assigned EC number0.97051.00.9705N/AN/A
P84230H32_CAIMONo assigned EC number0.94111.00.9705N/AN/A
Q5RCC9H33_PONABNo assigned EC number0.96321.00.9705yesN/A
Q6P823H33_XENTRNo assigned EC number0.97051.00.9705yesN/A
Q71T45H32_EUPESNo assigned EC number0.92641.00.9705N/AN/A
Q4QRF4H32_DANRENo assigned EC number0.94111.00.9705yesN/A
P68430H32_ONOVINo assigned EC number0.92641.00.9705N/AN/A
Q5E9F8H33_BOVINNo assigned EC number0.97051.00.9705yesN/A
P84244H33_MOUSENo assigned EC number0.97051.00.9705yesN/A
P84245H33_RATNo assigned EC number0.97051.00.9705yesN/A
P84246H33_RABITNo assigned EC number0.97051.00.9705yesN/A
P84247H33_CHICKNo assigned EC number0.97051.00.9705yesN/A
Q9U281H332_CAEELNo assigned EC number0.95581.00.9705yesN/A
Q28D37H32_XENTRNo assigned EC number0.94111.00.9705yesN/A
P84243H33_HUMANNo assigned EC number0.97051.00.9705yesN/A
P69248H32_PETCRNo assigned EC number0.92641.00.9705N/AN/A
P68428H32_WHEATNo assigned EC number0.92641.00.9705N/AN/A
P68429H32_MEDSANo assigned EC number0.92641.00.9705N/AN/A
P84248H33_SPISONo assigned EC number0.97051.00.9705N/AN/A
P84249H33_DROMENo assigned EC number0.97051.00.9705yesN/A
P68427H32_PEANo assigned EC number0.92641.00.9705N/AN/A
P02299H3_DROMENo assigned EC number0.94111.00.9705yesN/A
P84227H32_BOVINNo assigned EC number0.94111.00.9705yesN/A
Q2RAD9H32_ORYSJNo assigned EC number0.92641.00.9705yesN/A
Q76MV0H32_TOBACNo assigned EC number0.92641.00.9705N/AN/A
P84228H32_MOUSENo assigned EC number0.94111.00.9705yesN/A
P84229H32_CHICKNo assigned EC number0.94111.00.9705yesN/A
Q6LBE8H32_MUSPANo assigned EC number0.94111.00.9705N/AN/A
Q6PI20H33_DANRENo assigned EC number0.97051.00.9705yesN/A
A2Y533H32_ORYSINo assigned EC number0.92641.00.9705N/AN/A
P02301H3C_MOUSENo assigned EC number0.95581.00.9705yesN/A
Q71LE2H33_PIGNo assigned EC number0.97051.00.9705yesN/A
P84250H33_DROHYNo assigned EC number0.97051.00.9705N/AN/A
P69246H32_MAIZENo assigned EC number0.92641.00.9705N/AN/A
P08903H32_ENCALNo assigned EC number0.93381.00.9705N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
PTZ00018136 PTZ00018, PTZ00018, histone H3; Provisional 1e-77
PLN00121136 PLN00121, PLN00121, histone H3; Provisional 2e-67
smart00428105 smart00428, H3, Histone H3 1e-50
PLN00161135 PLN00161, PLN00161, histone H3; Provisional 4e-37
PLN0016097 PLN00160, PLN00160, histone H3; Provisional 1e-33
pfam0012575 pfam00125, Histone, Core histone H2A/H2B/H3/H4 5e-30
COG203691 COG2036, HHT1, Histones H3 and H4 [Chromatin struc 6e-27
>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional Back     alignment and domain information
 Score =  225 bits (574), Expect = 1e-77
 Identities = 124/136 (91%), Positives = 130/136 (95%), Gaps = 4/136 (2%)

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTE 56
           MARTKQTARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHR    TVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTE 60

Query: 57  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 117 MPKDIQLARRIRGERA 132
           MPKDIQLARRIRGER+
Sbjct: 121 MPKDIQLARRIRGERS 136


Length = 136

>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional Back     alignment and domain information
>gnl|CDD|128705 smart00428, H3, Histone H3 Back     alignment and domain information
>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional Back     alignment and domain information
>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional Back     alignment and domain information
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4 Back     alignment and domain information
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 132
PTZ00018136 histone H3; Provisional 100.0
PLN00121136 histone H3; Provisional 100.0
PLN00161135 histone H3; Provisional 100.0
KOG1745|consensus137 100.0
PLN0016097 histone H3; Provisional 100.0
smart00428105 H3 Histone H3. 100.0
COG203691 HHT1 Histones H3 and H4 [Chromatin structure and d 99.93
PF0012575 Histone: Core histone H2A/H2B/H3/H4 histone h2a si 99.85
cd0798172 TAF12 TATA Binding Protein (TBP) Associated Factor 99.4
cd0007685 H4 Histone H4, one of the four histones, along wit 99.28
PLN00035103 histone H4; Provisional 99.24
PTZ00015102 histone H4; Provisional 99.22
smart0080365 TAF TATA box binding protein associated factor. TA 99.17
smart0041774 H4 Histone H4. 99.07
PLN00158116 histone H2B; Provisional 98.86
cd07979117 TAF9 TATA Binding Protein (TBP) Associated Factor 98.81
PTZ00463117 histone H2B; Provisional 98.77
PF0080865 CBFD_NFYB_HMF: Histone-like transcription factor ( 98.76
smart0042789 H2B Histone H2B. 98.74
PF1563076 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 98.33
smart0057677 BTP Bromodomain transcription factors and PHD doma 98.32
KOG1744|consensus127 98.29
cd00074115 H2A Histone 2A; H2A is a subunit of the nucleosome 98.24
KOG0870|consensus172 98.13
PF0384768 TFIID_20kDa: Transcription initiation factor TFIID 98.07
PF0296966 TAF: TATA box binding protein associated factor (T 98.0
cd08050 343 TAF6 TATA Binding Protein (TBP) Associated Factor 97.98
PF02291129 TFIID-31kDa: Transcription initiation factor IID, 97.88
PF15511414 CENP-T: Centromere kinetochore component CENP-T; P 97.82
KOG1142|consensus258 97.62
KOG0869|consensus168 97.03
KOG3334|consensus148 96.75
KOG3467|consensus103 96.64
PF0752477 Bromo_TP: Bromodomain associated; InterPro: IPR006 96.62
KOG0871|consensus156 95.83
PLN00154136 histone H2A; Provisional 94.87
smart00414106 H2A Histone 2A. 94.63
PF0226993 TFIID-18kDa: Transcription initiation factor IID, 94.54
PTZ00017134 histone H2A; Provisional 94.29
COG5262132 HTA1 Histone H2A [Chromatin structure and dynamics 93.48
KOG2549|consensus 576 93.04
PLN00156139 histone H2AX; Provisional 92.88
PLN00157132 histone H2A; Provisional 92.69
PLN00153129 histone H2A; Provisional 92.15
PTZ00252134 histone H2A; Provisional 91.08
COG5150148 Class 2 transcription repressor NC2, beta subunit 90.9
COG5094145 TAF9 Transcription initiation factor TFIID, subuni 90.6
KOG1756|consensus131 90.37
cd08045212 TAF4 TATA Binding Protein (TBP) Associated Factor 90.29
cd0797892 TAF13 The TATA Binding Protein (TBP) Associated Fa 90.27
PF05236 264 TAF4: Transcription initiation factor TFIID compon 89.32
KOG4336|consensus 323 87.55
COG5248126 TAF19 Transcription initiation factor TFIID, subun 84.25
KOG1657|consensus236 84.19
PF09123138 DUF1931: Domain of unknown function (DUF1931); Int 82.7
KOG3901|consensus109 80.87
COG5208 286 HAP5 CCAAT-binding factor, subunit C [Transcriptio 80.77
>PTZ00018 histone H3; Provisional Back     alignment and domain information
Probab=100.00  E-value=5.7e-54  Score=318.53  Aligned_cols=131  Identities=95%  Similarity=1.291  Sum_probs=124.3

Q ss_pred             CCCccccccccCCCCCCcchhhhhhhccCCCCCCCCCCccc----cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhh
Q psy10959          1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK   76 (132)
Q Consensus         1 Martk~~a~k~~~~kap~k~~~~~~~~~~~p~~~~~~~~~r----~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~   76 (132)
                      |||||+++++++|+++|+++.++++..++.+.+++.++++|    +++|+|||+||+||+|||||+||+||||||++++.
T Consensus         1 MaRtk~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~   80 (136)
T PTZ00018          1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK   80 (136)
T ss_pred             CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcC
Confidence            99999999999999999999988877777766777777766    99999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhccc
Q psy10959         77 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER  131 (132)
Q Consensus        77 ~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~  131 (132)
                      .++|||++||++|||++|+|||+||||+|+||+||||||||++||+|+.+|||++
T Consensus        81 ~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~  135 (136)
T PTZ00018         81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER  135 (136)
T ss_pred             CcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence            9999999999999999999999999999999999999999999999999999986



>PLN00121 histone H3; Provisional Back     alignment and domain information
>PLN00161 histone H3; Provisional Back     alignment and domain information
>KOG1745|consensus Back     alignment and domain information
>PLN00160 histone H3; Provisional Back     alignment and domain information
>smart00428 H3 Histone H3 Back     alignment and domain information
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics] Back     alignment and domain information
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ] Back     alignment and domain information
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution Back     alignment and domain information
>PLN00035 histone H4; Provisional Back     alignment and domain information
>PTZ00015 histone H4; Provisional Back     alignment and domain information
>smart00803 TAF TATA box binding protein associated factor Back     alignment and domain information
>smart00417 H4 Histone H4 Back     alignment and domain information
>PLN00158 histone H2B; Provisional Back     alignment and domain information
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PTZ00463 histone H2B; Provisional Back     alignment and domain information
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin Back     alignment and domain information
>smart00427 H2B Histone H2B Back     alignment and domain information
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C Back     alignment and domain information
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins Back     alignment and domain information
>KOG1744|consensus Back     alignment and domain information
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome Back     alignment and domain information
>KOG0870|consensus Back     alignment and domain information
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] Back     alignment and domain information
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] Back     alignment and domain information
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T Back     alignment and domain information
>KOG1142|consensus Back     alignment and domain information
>KOG0869|consensus Back     alignment and domain information
>KOG3334|consensus Back     alignment and domain information
>KOG3467|consensus Back     alignment and domain information
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO) Back     alignment and domain information
>KOG0871|consensus Back     alignment and domain information
>PLN00154 histone H2A; Provisional Back     alignment and domain information
>smart00414 H2A Histone 2A Back     alignment and domain information
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18) Back     alignment and domain information
>PTZ00017 histone H2A; Provisional Back     alignment and domain information
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2549|consensus Back     alignment and domain information
>PLN00156 histone H2AX; Provisional Back     alignment and domain information
>PLN00157 histone H2A; Provisional Back     alignment and domain information
>PLN00153 histone H2A; Provisional Back     alignment and domain information
>PTZ00252 histone H2A; Provisional Back     alignment and domain information
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription] Back     alignment and domain information
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1756|consensus Back     alignment and domain information
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site Back     alignment and domain information
>KOG4336|consensus Back     alignment and domain information
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription] Back     alignment and domain information
>KOG1657|consensus Back     alignment and domain information
>PF09123 DUF1931: Domain of unknown function (DUF1931); InterPro: IPR015207 This entry represents a set of hypothetical bacterial proteins containing a core of six alpha-helices, where one central helix is surrounded by the other five Back     alignment and domain information
>KOG3901|consensus Back     alignment and domain information
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
4hga_B136 Structure Of The Variant Histone H3.3-H4 Heterodime 6e-70
3av2_A139 The Human Nucleosome Structure Containing The Histo 7e-70
2hio_C136 Histone Octamer (Chicken), Chromosomal Protein Leng 4e-68
3av1_A139 The Human Nucleosome Structure Containing The Histo 5e-68
2cv5_A136 Crystal Structure Of Human Nucleosome Core Particle 2e-67
3lel_A136 Structural Insight Into The Sequence-Dependence Of 2e-67
3afa_A139 The Human Nucleosome Structure Length = 139 2e-67
2io5_B135 Crystal Structure Of The Cia- Histone H3-H4 Complex 2e-67
3azh_A139 Crystal Structure Of Human Nucleosome Core Particle 5e-67
3azg_A139 Crystal Structure Of Human Nucleosome Core Particle 5e-67
3azf_A139 Crystal Structure Of Human Nucleosome Core Particle 5e-67
3aze_A139 Crystal Structure Of Human Nucleosome Core Particle 5e-67
3ayw_A139 Crystal Structure Of Human Nucleosome Core Particle 5e-67
1kx3_A135 X-Ray Structure Of The Nucleosome Core Particle, Nc 1e-66
1f66_A136 2.6 A Crystal Structure Of A Nucleosome Core Partic 1e-66
4h9n_A135 Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 13 3e-66
3kxb_A135 Structural Characterization Of H3k56q Nucleosomes A 3e-66
3a6n_A139 The Nucleosome Containing A Testis-Specific Histone 7e-66
1zla_A135 X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L 7e-66
4h9s_A135 Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 13 2e-65
4h9o_A135 Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length 2e-65
1m18_A135 Ligand Binding Alters The Structure And Dynamics Of 3e-65
1p3b_A135 Crystallographic Studies Of Nucleosome Core Particl 3e-65
3c1c_A135 The Effect Of H3 K79 Dimethylation And H4 K20 Trime 4e-65
1p3k_A135 Crystallographic Studies Of Nucleosome Core Particl 1e-64
1p3a_A135 Crystallographic Studies Of Nucleosome Core Particl 2e-64
1p3m_A135 Crystallographic Studies Of Nucleosome Core Particl 2e-64
1p34_A135 Crystallographic Studies Of Nucleosome Core Particl 2e-64
1p3l_A135 Crystallographic Studies Of Nucleosome Core Particl 3e-64
1id3_A135 Crystal Structure Of The Yeast Nucleosome Core Part 7e-62
4h9p_A135 Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length 7e-59
1aoi_A116 Complex Between Nucleosome Core Particle (H3,H4,H2a 5e-56
1hio_C93 Histone Octamer (Chicken), Chromosomal Protein, Alp 6e-46
3kwq_A98 Structural Characterization Of H3k56q Nucleosomes A 7e-46
2hue_B77 Structure Of The H3-h4 Chaperone Asf1 Bound To Hist 7e-37
4eo5_B76 Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76 8e-37
2yfw_A92 Heterotetramer Structure Of Kluyveromyces Lactis Cs 3e-29
2yfv_A100 The Heterotrimeric Complex Of Kluyveromyces Lactis 2e-28
3nqu_A140 Crystal Structure Of Partially Trypsinized (Cenp-AH 9e-26
3an2_A143 The Structure Of The Centromeric Nucleosome Contain 9e-26
3r45_A156 Structure Of A Cenp-A-Histone H4 Heterodimer In Com 1e-25
2l5a_A 235 Structural Basis For Recognition Of Centromere Spec 2e-25
3nqj_A82 Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER Len 5e-20
2ly8_A121 The Budding Yeast Chaperone Scm3 Recognizes The Par 6e-15
4ft4_P32 Crystal Structure Of Zea Mays Zmet2 In Complex H3(1 3e-09
4hsu_C30 Crystal Structure Of Lsd2-npac With H3(1-26)in Spac 1e-08
3n9p_B32 Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 2e-08
3n9n_B32 Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 P 2e-08
4gu0_E26 Crystal Structure Of Lsd2 With H3 Length = 26 2e-06
3u5p_I28 Crystal Structure Of The Complex Of Trim33 Phd-Brom 9e-06
3a1b_A159 Crystal Structure Of The Dnmt3a Add Domain In Compl 5e-05
3kv4_B24 Structure Of Phf8 In Complex With Histone H3 Length 5e-05
3avr_B22 Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H 2e-04
2kft_B21 Nmr Solution Structure Of The First Phd Finger Doma 2e-04
2kwk_B20 Solution Structures Of The Double Phd Fingers Of Hu 3e-04
2uxn_E21 Structural Basis Of Histone Demethylation By Lsd1 R 4e-04
2v1d_C21 Structural Basis Of Lsd1-Corest Selectivity In Hist 4e-04
2g46_C21 Structure Of Vset In Complex With Mek27 H3 Pept. An 8e-04
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In Complex With Its Chaperone Daxx Length = 136 Back     alignment and structure

Iteration: 1

Score = 258 bits (660), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 132/136 (97%), Positives = 132/136 (97%), Gaps = 4/136 (2%) Query: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTE 56 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR TVALREIRRYQKSTE Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60 Query: 57 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120 Query: 117 MPKDIQLARRIRGERA 132 MPKDIQLARRIRGERA Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.3 Length = 139 Back     alignment and structure
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein Length = 136 Back     alignment and structure
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.2 Length = 139 Back     alignment and structure
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Length = 136 Back     alignment and structure
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of Nucleosom Positioning Length = 136 Back     alignment and structure
>pdb|3AFA|A Chain A, The Human Nucleosome Structure Length = 139 Back     alignment and structure
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex Length = 135 Back     alignment and structure
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k122q Mutation Length = 139 Back     alignment and structure
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k115q Mutation Length = 139 Back     alignment and structure
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k79q Mutation Length = 139 Back     alignment and structure
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k64q Mutation Length = 139 Back     alignment and structure
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k56q Mutation Length = 139 Back     alignment and structure
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 135 Back     alignment and structure
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 136 Back     alignment and structure
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 135 Back     alignment and structure
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleosomal Arrays Length = 135 Back     alignment and structure
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 139 Back     alignment and structure
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 135 Back     alignment and structure
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 135 Back     alignment and structure
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length = 135 Back     alignment and structure
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 135 Back     alignment and structure
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 Back     alignment and structure
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 135 Back     alignment and structure
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 Back     alignment and structure
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 Back     alignment and structure
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 Back     alignment and structure
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 Back     alignment and structure
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135 Back     alignment and structure
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 135 Back     alignment and structure
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length = 135 Back     alignment and structure
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116 Back     alignment and structure
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 93 Back     alignment and structure
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 98 Back     alignment and structure
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3 And H4 Length = 77 Back     alignment and structure
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76 Back     alignment and structure
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4 Length = 92 Back     alignment and structure
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3, Cse4 And H4 Length = 100 Back     alignment and structure
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2 HETEROTETRAMER Length = 140 Back     alignment and structure
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 143 Back     alignment and structure
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex With Chaperone Hjurp Length = 156 Back     alignment and structure
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific Histone H3 Variant By Nonhistone Scm3 Length = 235 Back     alignment and structure
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER Length = 82 Back     alignment and structure
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially Unfolded Dimer Of The Centromere-specific Cse4/h4 Histone Variant Length = 121 Back     alignment and structure
>pdb|4FT4|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-32)k9me2 Peptide And Sah Length = 32 Back     alignment and structure
>pdb|4HSU|C Chain C, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group P21 Length = 30 Back     alignment and structure
>pdb|3N9P|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide And Nog Length = 32 Back     alignment and structure
>pdb|3N9N|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide And Nog Length = 32 Back     alignment and structure
>pdb|4GU0|E Chain E, Crystal Structure Of Lsd2 With H3 Length = 26 Back     alignment and structure
>pdb|3U5P|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And H3(1-28) K9me3k14ack18ack23ac Histone Peptide Length = 28 Back     alignment and structure
>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex With Histone H3 Length = 159 Back     alignment and structure
>pdb|3KV4|B Chain B, Structure Of Phf8 In Complex With Histone H3 Length = 24 Back     alignment and structure
>pdb|3AVR|B Chain B, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3 PEPTIDE, N-Oxyalylglycine, And Ni(Ii) Length = 22 Back     alignment and structure
>pdb|2KFT|B Chain B, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 21 Back     alignment and structure
>pdb|2KWK|B Chain B, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild Type Length = 20 Back     alignment and structure
>pdb|2UXN|E Chain E, Structural Basis Of Histone Demethylation By Lsd1 Revealed By Suicide Inactivation Length = 21 Back     alignment and structure
>pdb|2V1D|C Chain C, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 21 Back     alignment and structure
>pdb|2G46|C Chain C, Structure Of Vset In Complex With Mek27 H3 Pept. And Cofactor Product Sah Length = 21 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
1tzy_C136 Histone H3; histone-fold, tetramer-dimer-dimer, DN 2e-45
2hue_B77 Histone H3; mini beta sheet, elongated beta sandwh 2e-39
3nqu_A140 Histone H3-like centromeric protein A; alpha helix 1e-34
3nqj_A82 Histone H3-like centromeric protein A; alpha helix 1e-32
2yfv_A100 Histone H3-like centromeric protein CSE4; cell cyc 2e-32
3r45_A156 Histone H3-like centromeric protein A; histone fol 2e-32
2l5a_A 235 Histone H3-like centromeric protein CSE4, protein 9e-28
2l5a_A235 Histone H3-like centromeric protein CSE4, protein 2e-04
3avr_B26 Histone H3; cupin superfamily, TRI/dimethyllysine 2e-04
2x4w_B26 Histone H3.2; transcription, metal-binding, zinc-f 3e-04
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Length = 136 Back     alignment and structure
 Score =  143 bits (360), Expect = 2e-45
 Identities = 127/136 (93%), Positives = 130/136 (95%), Gaps = 4/136 (2%)

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPH----RTVALREIRRYQKSTE 56
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPH     TVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 57  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 116
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 117 MPKDIQLARRIRGERA 132
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Length = 77 Back     alignment and structure
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Length = 140 Back     alignment and structure
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Length = 82 Back     alignment and structure
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Length = 100 Back     alignment and structure
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Length = 156 Back     alignment and structure
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235 Back     alignment and structure
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235 Back     alignment and structure
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} Length = 26 Back     alignment and structure
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B* Length = 26 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query132
1tzy_C136 Histone H3; histone-fold, tetramer-dimer-dimer, DN 100.0
3nqu_A140 Histone H3-like centromeric protein A; alpha helix 100.0
3r45_A156 Histone H3-like centromeric protein A; histone fol 100.0
2yfv_A100 Histone H3-like centromeric protein CSE4; cell cyc 100.0
2hue_B77 Histone H3; mini beta sheet, elongated beta sandwh 100.0
3nqj_A82 Histone H3-like centromeric protein A; alpha helix 100.0
2l5a_A 235 Histone H3-like centromeric protein CSE4, protein 100.0
2ly8_A121 Budding yeast chaperone SCM3; centromere protein, 99.94
1b67_A68 Protein (histone HMFA); DNA binding protein; 1.48A 99.84
1ku5_A70 HPHA, archaeal histon; histone fold, DNA binding p 99.76
1n1j_A93 NF-YB; histone-like PAIR, DNA binding protein; 1.6 99.65
1id3_B102 Histone H4; nucleosome core particle, chromatin, p 99.3
1tzy_D103 Histone H4-VI; histone-fold, tetramer-dimer-dimer, 99.29
2yfw_B103 Histone H4, H4; cell cycle, kinetochore, centromer 99.28
2hue_C84 Histone H4; mini beta sheet, elongated beta sandwh 99.27
3b0c_T111 CENP-T, centromere protein T; histone fold, DNA bi 99.2
1f1e_A154 Histone fold protein; archaeal histone protein, DN 99.19
3b0c_W76 CENP-W, centromere protein W; histone fold, DNA bi 99.18
2nqb_D123 Histone H2B; nucleosome, NCP, chromatin, structura 99.17
1tzy_B126 Histone H2B; histone-fold, tetramer-dimer-dimer, D 99.16
1taf_B70 TFIID TBP associated factor 62; transcription init 99.09
1taf_A68 TFIID TBP associated factor 42; transcription init 99.05
1f1e_A154 Histone fold protein; archaeal histone protein, DN 99.04
3v9r_A90 MHF1, uncharacterized protein YOL086W-A; histone f 98.93
4dra_A113 Centromere protein S; DNA binding complex, DNA dam 98.92
3b0b_B107 CENP-S, centromere protein S; histone fold, DNA bi 98.86
2byk_B128 Chrac-14; nucleosome sliding, histone fold, DNA-bi 98.84
1jfi_B179 DR1 protein, transcription regulator NC2 beta chai 98.83
3vh5_A140 CENP-S; histone fold, chromosome segregation, DNA 98.8
2jss_A 192 Chimera of histone H2B.1 and histone H2A.Z; histon 98.72
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 98.61
4g92_C119 HAPE; transcription factor, nucleosome, minor groo 98.47
2l5a_A235 Histone H3-like centromeric protein CSE4, protein 98.28
2f8n_G120 Core histone macro-H2A.1; nucleosome, NCP, macroh2 98.26
2nqb_C123 Histone H2A; nucleosome, NCP, chromatin, structura 98.23
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 98.22
1tzy_A129 Histone H2A-IV; histone-fold, tetramer-dimer-dimer 98.2
1h3o_B76 Transcription initiation factor TFIID 20/15 kDa su 98.15
2f8n_K149 Histone H2A type 1; nucleosome, NCP, macroh2A, his 98.14
1f66_C128 Histone H2A.Z; nucleosome, chromatin, histone vari 98.11
1id3_C131 Histone H2A.1; nucleosome core particle, chromatin 98.09
2byk_A140 Chrac-16; nucleosome sliding, histone fold, DNA-bi 97.86
2jss_A192 Chimera of histone H2B.1 and histone H2A.Z; histon 97.85
2r10_A 361 Chromatin structure-remodeling complex protein RSC 97.61
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 91.8
3avr_B26 Histone H3; cupin superfamily, TRI/dimethyllysine 91.3
4dra_E84 Centromere protein X; DNA binding complex, DNA dam 87.47
1r4v_A171 Hypothetical protein AQ_328; structural genomics, 86.3
3b0b_C81 CENP-X, centromere protein X; histone fold, DNA bi 85.9
1wwi_A148 Hypothetical protein TTHA1479; structural genomics 82.83
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Back     alignment and structure
Probab=100.00  E-value=1.1e-58  Score=343.17  Aligned_cols=132  Identities=97%  Similarity=1.301  Sum_probs=89.6

Q ss_pred             CCCccccccccCCCCCCcchhhhhhhccCCCCCCCCCCccc----cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhh
Q psy10959          1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHR----TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK   76 (132)
Q Consensus         1 Martk~~a~k~~~~kap~k~~~~~~~~~~~p~~~~~~~~~r----~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~   76 (132)
                      ||||||++++++||++|+|++++++++++.|.++++++|+|    +++|+|||+||+||+||||++||+||||||+++|.
T Consensus         1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~   80 (136)
T 1tzy_C            1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK   80 (136)
T ss_dssp             -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred             CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999988887    99999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccHHHHHHHhcccC
Q psy10959         77 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA  132 (132)
Q Consensus        77 ~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi~La~rirg~~~  132 (132)
                      +++|||++|+++|||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus        81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~  136 (136)
T 1tzy_C           81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA  136 (136)
T ss_dssp             TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred             hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence            99999999999999999999999999999999999999999999999999999864



>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Back     alignment and structure
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Back     alignment and structure
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Back     alignment and structure
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Back     alignment and structure
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Back     alignment and structure
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Back     alignment and structure
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Back     alignment and structure
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... Back     alignment and structure
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} Back     alignment and structure
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B Back     alignment and structure
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W Back     alignment and structure
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Back     alignment and structure
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Back     alignment and structure
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A Back     alignment and structure
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} Back     alignment and structure
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Back     alignment and structure
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Back     alignment and structure
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C* Back     alignment and structure
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Back     alignment and structure
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Back     alignment and structure
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Back     alignment and structure
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Back     alignment and structure
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Back     alignment and structure
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J Back     alignment and structure
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4 Back     alignment and structure
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D Back     alignment and structure
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 132
d1tzyc_95 a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), 2e-52
d1f1ea_151 a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy 2e-08
d1ku5a_66 a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococc 3e-04
d1q9ca_172 a.22.1.3 (A:) Histone domain of Son of sevenless p 0.001
d1htaa_68 a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth 0.001
d1n1ja_87 a.22.1.3 (A:) Nuclear transcription factor Y subun 0.002
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95 Back     information, alignment and structure

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
 Score =  158 bits (402), Expect = 2e-52
 Identities = 88/91 (96%), Positives = 90/91 (98%)

Query: 42  TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLF 101
           TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLF
Sbjct: 5   TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLF 64

Query: 102 EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 132
           EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 65  EDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95


>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151 Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Length = 66 Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172 Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68 Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query132
d1tzyc_95 Histone H3 {Chicken (Gallus gallus), erythrocytes 100.0
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 99.41
d1htaa_68 Archaeal histone {Archaeon Methanothermus fervidus 99.35
d1ku5a_66 Archaeal histone {Archaeon (Pyrococcus horikoshii) 99.25
d2huec182 Histone H4 {African clawed frog (Xenopus laevis) [ 99.01
d1tzyb_92 Histone H2B {Chicken (Gallus gallus), erythrocytes 99.01
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 98.99
d1n1ja_87 Nuclear transcription factor Y subunit beta (Nf-Yb 98.92
d1jfib_135 Negative cofactor 2, NC2, beta chain {Human (Homo 98.61
d1q9ca_172 Histone domain of Son of sevenless protein {Human 98.55
d1n1jb_78 Nuclear transcription factor Y subunit gamma (Nf-Y 98.49
d2bykb189 Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax 98.49
d1jfia_66 Negative cofactor 2, NC2, alpha chain {Human (Homo 98.36
d1tafa_68 TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta 98.06
d1h3ob_74 TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom 97.94
d1tafb_70 TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta 97.88
d1u35c1106 macro-H2A.1, histone domain {Human (Homo sapiens) 96.61
d1f66c_103 Histone H2A {Human (Homo sapiens), variant H2A.Z [ 96.56
d1tzya_106 Histone H2A {Chicken (Gallus gallus), erythrocytes 96.49
d2byka172 Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax 96.45
d1q9ca_172 Histone domain of Son of sevenless protein {Human 89.37
d1wwia1148 Hypothetical protein TTHA1479 {Thermus thermophilu 83.57
d1r4va_151 Hypothetical protein Aq_328 {Aquifex aeolicus [Tax 81.46
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 81.23
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=100.00  E-value=9.1e-46  Score=257.86  Aligned_cols=91  Identities=97%  Similarity=1.315  Sum_probs=89.6

Q ss_pred             cchhhhHHhhhcchhhhhhcchhHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCccccCcccH
Q psy10959         42 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI  121 (132)
Q Consensus        42 ~~alrEIr~~Qkst~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLQeaaE~~lv~lfe~a~~~a~HakRvTi~~kDi  121 (132)
                      ++||+|||+||+||++||||+||+||||||++++++++||+++|+++|||++|+|||++|||||+||+|+||||||++||
T Consensus         5 t~ALrEIRk~Qkst~lLIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~   84 (95)
T d1tzyc_           5 TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI   84 (95)
T ss_dssp             HHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred             hHHHHHHHHHhCCcccccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q psy10959        122 QLARRIRGERA  132 (132)
Q Consensus       122 ~La~rirg~~~  132 (132)
                      +||++|||+++
T Consensus        85 ~LarrirG~r~   95 (95)
T d1tzyc_          85 QLARRIRGERA   95 (95)
T ss_dssp             HHHHHHHTCCC
T ss_pred             HHHHHHhccCC
Confidence            99999999974



>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Back     information, alignment and structure
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Back     information, alignment and structure
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure