Psyllid ID: psy11013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MESIPTCHSEKMSCVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV
Secondary Structure (PSIPRED)
cccccccccccEEEEEccccccccHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHcccccccccEEEEEEEEccccHHHHHHHHHHHccccccccccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHccccccccccccccEEcccccccccccccc
Coil and Loop (DISEMBL)
mesiptchsekmsCVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNtfllgdcgprgssLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKcqgiyplhDVFIRKVKVLKKPRFELSKLLELhgegkggatidesgetvdrpegyeppvqeav
Flexible Loop (DISEMBL)
mesiptchsekmscVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEkkcqgiyplhDVFIRKVKVLKKPRFELSKLlelhgegkggatidesgetvdrpegyeppvqeav
Low Complexity Region (SEG)
MESIPTCHSEKMSCVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFelskllelhgegkggATIDESGETVDRPEGYEPPVQEAV
Disordered region (IsUnstruct)
***********MSCVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLEL*******************************
Disordered Region (DISOPRED)
***IPTCHSEKMSCVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLL**********************EGYEPPVQ***
Disordered Region (DISEMBL)
*********EKMSCVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV
Disordered Region (DISPRO)
***IPTCHSEKMSCVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHG********************YE*P*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESIPTCHSEKMSCVVGALSFNLSSACRTIRKNWMKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q5G5C4	263	40S ribosomal protein S3a	N/A	N/A	0.829	0.555	0.608	1e-44
Q6EV04	267	40S ribosomal protein S3a	N/A	N/A	0.818	0.539	0.597	1e-40
A6YPJ8	262	40S ribosomal protein S3a	N/A	N/A	0.801	0.538	0.566	1e-39
P61247	264	40S ribosomal protein S3a	yes	N/A	0.755	0.503	0.592	4e-39
Q56JV9	264	40S ribosomal protein S3a	yes	N/A	0.755	0.503	0.592	4e-39
Q4R4Z6	264	40S ribosomal protein S3a	N/A	N/A	0.755	0.503	0.592	4e-39
P61246	260	40S ribosomal protein S3a	N/A	N/A	0.755	0.511	0.592	5e-39
Q1HRR3	270	40S ribosomal protein S3a	N/A	N/A	0.926	0.603	0.494	5e-39
Q56FG9	266	40S ribosomal protein S3a	N/A	N/A	0.812	0.537	0.553	9e-39
P97351	264	40S ribosomal protein S3a	yes	N/A	0.755	0.503	0.585	2e-38

>sp|Q5G5C4|RS3A_PERAM 40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 109/161 (67%), Gaps = 15/161 (9%)

Query: 24  SSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHV 75
           +   R++ K W  L+        T GYL     L  F +G       S +       T V
Sbjct: 110 TDKLRSMVKKWQTLIEANVDVKTTDGYL-----LRVFCIGFTNKDQMSQRKTCYAQHTQV 164

Query: 76  RQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKP 135
           R IRKKMVEII  +V  SDLKEVVNKLLPDSIAK+IEK CQGIYPLHDV+IRKVKVLKKP
Sbjct: 165 RAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKP 224

Query: 136 RFELSKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV 176
           RFELSKLLELHG+GKGG+  DE G  VDRPEGYEPPVQE V
Sbjct: 225 RFELSKLLELHGDGKGGS--DEPGARVDRPEGYEPPVQETV 263

Periplaneta americana (taxid: 6978)

>sp|Q6EV04|RS3A_BIPLU 40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1

 Score =  165 bits (418), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 108/159 (67%), Gaps = 15/159 (9%)

Query: 28  RTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIR 79
           R++ K W  L+        T GYL     L  F +G       S +       T VR IR
Sbjct: 114 RSMVKKWQSLIEASADVKTTDGYL-----LRVFCIGFTNKDQLSQRKTCYAQHTQVRSIR 168

Query: 80  KKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFEL 139
           KKMVEII  ++  SDLKEVVNKLLPDSIAK+IEK  QGIYPLHDV+IRKVKVLKKPRFEL
Sbjct: 169 KKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFEL 228

Query: 140 SKLLELHGE-GKGGA-TIDESGETVDRPEGYEPPVQEAV 176
           SKLLELHG+ GKGG+    E+G  VD+PEGYEPPVQEAV
Sbjct: 229 SKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEAV 267

Biphyllus lunatus (taxid: 197003)

>sp|A6YPJ8|RS3A_TRIIF 40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 104/157 (66%), Gaps = 16/157 (10%)

Query: 28  RTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIR 79
           R++ K W  L+        T GYL     L  F +G       S +       T VRQIR
Sbjct: 114 RSMVKKWQTLIEANVDVRTTDGYL-----LRVFCIGFTNKDQLSQRKTCYAQHTQVRQIR 168

Query: 80  KKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFEL 139
           +KMV+ I + +  SDL+ VVNKL+PDSIAK+IEK CQGIYPLHDV+IRKVKVLKKPRFEL
Sbjct: 169 RKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFEL 228

Query: 140 SKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV 176
           SKLLELHG+GKG    DE G  V RPE YEPPVQE+V
Sbjct: 229 SKLLELHGDGKGS---DEPGAKVSRPEAYEPPVQESV 262

Triatoma infestans (taxid: 30076)

>sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2

 Score =  160 bits (405), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 100/140 (71%), Gaps = 7/140 (5%)

Query: 39  TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
           T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct: 130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query: 99  VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEG--KGGATID 156
           VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+FEL KL+ELHGEG   G AT D
Sbjct: 185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query: 157 ESGETVDRPEGYEPPVQEAV 176
           E+G  V+R +GYEPPVQE+V
Sbjct: 245 ETGAKVERADGYEPPVQESV 264

May play a role during erythropoiesis through regulation of transcription factor DDIT3.

Homo sapiens (taxid: 9606)

>sp|Q56JV9|RS3A_BOVIN 40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3

 Score =  160 bits (405), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 100/140 (71%), Gaps = 7/140 (5%)

Query: 39  TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
           T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct: 130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query: 99  VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEG--KGGATID 156
           VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+FEL KL+ELHGEG   G AT D
Sbjct: 185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query: 157 ESGETVDRPEGYEPPVQEAV 176
           E+G  V+R +GYEPPVQE+V
Sbjct: 245 ETGAKVERADGYEPPVQESV 264

May play a role during erythropoiesis through regulation of transcription factor DDIT3.

Bos taurus (taxid: 9913)

>sp|Q4R4Z6|RS3A_MACFA 40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3

 Score =  160 bits (404), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 100/140 (71%), Gaps = 7/140 (5%)

Query: 39  TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
           T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct: 130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query: 99  VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEG--KGGATID 156
           VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+FEL KL+ELHGEG   G AT D
Sbjct: 185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query: 157 ESGETVDRPEGYEPPVQEAV 176
           E+G  V+R +GYEPPVQE+V
Sbjct: 245 ETGAKVERADGYEPPVQESV 264

May play a role during erythropoiesis through regulation of transcription factor DDIT3.

Macaca fascicularis (taxid: 9541)

>sp|P61246|RS3A_FELCA 40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1

 Score =  160 bits (404), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 100/140 (71%), Gaps = 7/140 (5%)

Query: 39  TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
           T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct: 126 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 180

Query: 99  VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEG--KGGATID 156
           VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+FEL KL+ELHGEG   G AT D
Sbjct: 181 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 240

Query: 157 ESGETVDRPEGYEPPVQEAV 176
           E+G  V+R +GYEPPVQE+V
Sbjct: 241 ETGAKVERADGYEPPVQESV 260

May play a role during erythropoiesis through regulation of transcription factor DDIT3.

Felis catus (taxid: 9685)

>sp|Q1HRR3|RS3A_AEDAE 40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1

 Score =  160 bits (404), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 112/182 (61%), Gaps = 19/182 (10%)

Query: 8   HSEKMSCVVGALSFNLSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGP 59
           H   + C    +    +   R++ K W  L+        T GYL     L  F +G    
Sbjct: 95  HGRNVLCNFHGMDLT-TDKLRSMVKKWQTLIECSVDVKTTDGYL-----LRVFCIGFTIK 148

Query: 60  RGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIY 119
              S +       + +++IR+KM  II  +V  SDLKEVVNKLLPDSIAK+IEK CQGIY
Sbjct: 149 DSVSQRKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIY 208

Query: 120 PLHDVFIRKVKVLKKPRFELSKLLELHGEGKG-GATID----ESGETVDRPEGYEPPVQE 174
           PLHDV+IRKVKVLKKPRF+L+ LLELHG+G G GA +     E G T+DRPEGYEPPVQE
Sbjct: 209 PLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRPEGYEPPVQE 268

Query: 175 AV 176
           +V
Sbjct: 269 SV 270

Aedes aegypti (taxid: 7159)

>sp|Q56FG9|RS3A_LYSTE 40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1

 Score =  159 bits (402), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 105/159 (66%), Gaps = 16/159 (10%)

Query: 28  RTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIR 79
           R++ K W  L+        T GYL     L  F +G       S +       + VR IR
Sbjct: 114 RSMVKKWQTLIEAHVDVKTTDGYL-----LRIFCIGFTQKDQMSTRKTSYAQHSQVRNIR 168

Query: 80  KKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFEL 139
           +KMV I+ +E+ K DLK VV KL+PD+IAK+IEK CQGIYPLHDV+IRKVKVLKKPRFEL
Sbjct: 169 RKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFEL 228

Query: 140 SKLLELHGEGKGGAT--IDESGETVDRPEGYEPPVQEAV 176
           SKLLELHG+G G  T  + E+G  VDRPEGYEPPVQE V
Sbjct: 229 SKLLELHGDG-GSKTGEVGETGSKVDRPEGYEPPVQETV 266

Lysiphlebus testaceipes (taxid: 77504)

>sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 99/140 (70%), Gaps = 7/140 (5%)

Query: 39  TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
           T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct: 130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query: 99  VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEG--KGGATID 156
           VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+FEL KL+ELHGEG   G A  D
Sbjct: 185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGD 244

Query: 157 ESGETVDRPEGYEPPVQEAV 176
           E+G  V+R +GYEPPVQE+V
Sbjct: 245 ETGAKVERADGYEPPVQESV 264

May play a role during erythropoiesis through regulation of transcription factor DDIT3.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
74901606	263	RecName: Full=40S ribosomal protein S3a	0.829	0.555	0.608	6e-43
110456351	85	ribosomal protein S3a-like protein [Diap	0.482	1.0	1.0	5e-41
260806989	266	hypothetical protein BRAFLDRAFT_69722 [B	0.903	0.597	0.514	2e-40
74910270	267	RecName: Full=40S ribosomal protein S3a	0.818	0.539	0.597	6e-39
242014939	263	40S ribosomal protein S3A, putative [Ped	0.829	0.555	0.571	7e-39
332374748	267	unknown [Dendroctonus ponderosae]	0.812	0.535	0.581	9e-39
70909553	160	ribosomal protein S3Ae [Eucinetus sp. AP	0.818	0.9	0.591	1e-38
307095112	262	40S ribosomal protein S3a [Triatoma mato	0.801	0.538	0.566	4e-38
209915543	266	ribosomal protein S3A [Acyrthosiphon pis	0.840	0.556	0.561	5e-38
269969616	262	RecName: Full=40S ribosomal protein S3a	0.801	0.538	0.566	5e-38

>gi|74901606|sp|Q5G5C4.1|RS3A_PERAM RecName: Full=40S ribosomal protein S3a gi|57869784|gb|AAW57773.1| Parcxpwex01 [Periplaneta americana]

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 109/161 (67%), Gaps = 15/161 (9%)

Query: 24  SSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHV 75
           +   R++ K W  L+        T GYL     L  F +G       S +       T V
Sbjct: 110 TDKLRSMVKKWQTLIEANVDVKTTDGYL-----LRVFCIGFTNKDQMSQRKTCYAQHTQV 164

Query: 76  RQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKP 135
           R IRKKMVEII  +V  SDLKEVVNKLLPDSIAK+IEK CQGIYPLHDV+IRKVKVLKKP
Sbjct: 165 RAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKP 224

Query: 136 RFELSKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV 176
           RFELSKLLELHG+GKGG+  DE G  VDRPEGYEPPVQE V
Sbjct: 225 RFELSKLLELHGDGKGGS--DEPGARVDRPEGYEPPVQETV 263

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110456351|gb|ABG74701.1| ribosomal protein S3a-like protein [Diaphorina citri]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 92  KSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKG 151
           KSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKG
Sbjct: 1   KSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKG 60

Query: 152 GATIDESGETVDRPEGYEPPVQEAV 176
           GATIDESGETVDRPEGYEPPVQEAV
Sbjct: 61  GATIDESGETVDRPEGYEPPVQEAV 85

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260806989|ref|XP_002598366.1| hypothetical protein BRAFLDRAFT_69722 [Branchiostoma floridae] gi|229283638|gb|EEN54378.1| hypothetical protein BRAFLDRAFT_69722 [Branchiostoma floridae]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 115/177 (64%), Gaps = 18/177 (10%)

Query: 13  SCVVGALSFNLSS-ACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSS 63
           +C+      NL++   R++ K W  L+        T GYL     L  F +G    R + 
Sbjct: 95  NCLTNFHGMNLTTDKLRSMVKKWQTLIEANVDVRTTDGYL-----LRLFCIGFTKKRQNQ 149

Query: 64  LKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHD 123
           +K       T +R IRKKMVEI+  EV  +DLKEVVNKL+PDS+ K+IEK CQGIYPLHD
Sbjct: 150 IKKTAYAQHTQIRAIRKKMVEIMTREVSSNDLKEVVNKLIPDSVGKDIEKACQGIYPLHD 209

Query: 124 VFIRKVKVLKKPRFELSKLLELHGEGKGGAT----IDESGETVDRPEGYEPPVQEAV 176
           V+IRKVKVLKKP+F++ KL+ELHGEG G  +      E+GE VDRPEGYEPP+QEAV
Sbjct: 210 VYIRKVKVLKKPKFDVGKLMELHGEGSGAVSKPVATTETGEKVDRPEGYEPPIQEAV 266

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74910270|sp|Q6EV04.1|RS3A_BIPLU RecName: Full=40S ribosomal protein S3a gi|50344458|emb|CAH04315.1| S3Ae ribosomal protein [Biphyllus lunatus]

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 108/159 (67%), Gaps = 15/159 (9%)

Query: 28  RTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIR 79
           R++ K W  L+        T GYL     L  F +G       S +       T VR IR
Sbjct: 114 RSMVKKWQSLIEASADVKTTDGYL-----LRVFCIGFTNKDQLSQRKTCYAQHTQVRSIR 168

Query: 80  KKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFEL 139
           KKMVEII  ++  SDLKEVVNKLLPDSIAK+IEK  QGIYPLHDV+IRKVKVLKKPRFEL
Sbjct: 169 KKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFEL 228

Query: 140 SKLLELHGE-GKGGA-TIDESGETVDRPEGYEPPVQEAV 176
           SKLLELHG+ GKGG+    E+G  VD+PEGYEPPVQEAV
Sbjct: 229 SKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEAV 267

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014939|ref|XP_002428136.1| 40S ribosomal protein S3A, putative [Pediculus humanus corporis] gi|212512679|gb|EEB15398.1| 40S ribosomal protein S3A, putative [Pediculus humanus corporis]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 104/161 (64%), Gaps = 15/161 (9%)

Query: 24  SSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHV 75
           +   R++ K W  L+        T GYL     L  F +G       S K       T V
Sbjct: 110 TDKLRSMVKKWQTLIEAHVDVKTTDGYL-----LRVFCIGFTNKDQMSQKKTCYAQHTQV 164

Query: 76  RQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKP 135
           R IRKKM EII  EV  SDLK+VV KLLPDSIAKEIEK CQ IYPLHDV+IRKVKVLKKP
Sbjct: 165 RAIRKKMTEIITKEVTDSDLKDVVQKLLPDSIAKEIEKYCQKIYPLHDVYIRKVKVLKKP 224

Query: 136 RFELSKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV 176
           RF+LSKLLELHG+ K  +  DE G  VDRP+GYEPPVQE+V
Sbjct: 225 RFDLSKLLELHGDSKAAS--DEPGAKVDRPKGYEPPVQESV 263

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374748|gb|AEE62515.1| unknown [Dendroctonus ponderosae]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 108/160 (67%), Gaps = 17/160 (10%)

Query: 28  RTIRKNWMKLM--------TTGYLHLSQSLNTFLLG--DCGPRGSSLKLVYQLFKTHVRQ 77
           R++ K W  L+        + GYL     L  F +G      + S  K  Y    T +RQ
Sbjct: 114 RSMVKKWQSLIEASADVKTSDGYL-----LRVFCIGFTQKDTQFSQRKTCYAQH-TQIRQ 167

Query: 78  IRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRF 137
           IRKKMVEII  ++  SDLKEVVNKLLPDSIAK+IEK CQGIYPLHDVFIRKVKVLKKPR+
Sbjct: 168 IRKKMVEIITRDIQGSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVFIRKVKVLKKPRY 227

Query: 138 ELSKLLELHGEGKGGATID-ESGETVDRPEGYEPPVQEAV 176
           ELSKLLELHG+ KG      ++G  V RPEGYEPPVQE+V
Sbjct: 228 ELSKLLELHGDAKGTTEASGDAGAQVARPEGYEPPVQESV 267

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909553|emb|CAJ17198.1| ribosomal protein S3Ae [Eucinetus sp. APV-2005]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 105/159 (66%), Gaps = 15/159 (9%)

Query: 28  RTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIR 79
           R++ K W  L+        T GYL     L  F +G       S +       T VR IR
Sbjct: 7   RSMVKKWQTLIVANADVKTTDGYL-----LRVFCIGFTNKDQLSHRKTCYAQHTQVRLIR 61

Query: 80  KKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFEL 139
           KKMVEII  +V   +LKEVVNKLLPDSIAK+IEK CQGIYPLHDV+IRKVKVLKKPRFEL
Sbjct: 62  KKMVEIISRDVTNCELKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFEL 121

Query: 140 SKLLELHGE--GKGGATIDESGETVDRPEGYEPPVQEAV 176
           SKLLELHG+  GKG A   E+G  V RPEGYEPPVQE V
Sbjct: 122 SKLLELHGDGGGKGAAEPGEAGSAVQRPEGYEPPVQETV 160

Source: Eucinetus sp. APV-2005

Species: Eucinetus sp. APV-2005

Genus: Eucinetus

Family: Eucinetidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307095112|gb|ADN29862.1| 40S ribosomal protein S3a [Triatoma matogrossensis]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 104/157 (66%), Gaps = 16/157 (10%)

Query: 28  RTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIR 79
           R++ K W  L+        T GYL     L  F +G       S +       T VRQIR
Sbjct: 114 RSMVKKWQTLIEANVDVRTTDGYL-----LRVFCIGFTNKDQLSQRKTCYAQHTQVRQIR 168

Query: 80  KKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFEL 139
           +KMV+ I + +  SDL+ VVNKL+PDSIAK+IEK CQGIYPLHDV+IRKVKVLKKPRFEL
Sbjct: 169 RKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFEL 228

Query: 140 SKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV 176
           SKLLELHG+GKG    DE G  V RPE YEPPVQE+V
Sbjct: 229 SKLLELHGDGKGS---DEPGAKVSRPEAYEPPVQESV 262

Source: Triatoma matogrossensis

Species: Triatoma matogrossensis

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209915543|ref|NP_001129593.1| ribosomal protein S3A [Acyrthosiphon pisum] gi|239793561|dbj|BAH72892.1| ACYPI010127 [Acyrthosiphon pisum]

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 104/162 (64%), Gaps = 14/162 (8%)

Query: 24  SSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHV 75
           +   R++ K W  L+        T GYL     L  F +G      SS +       T V
Sbjct: 110 TDKLRSMVKKWQTLIEANVDVKTTDGYL-----LRVFCIGFTSKDQSSTRKTCYAQHTQV 164

Query: 76  RQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKP 135
           R IRKKMVE I  E+VKSDLKEVVNKL PDSIAKEIEKKCQ IYPLHDVFIRKVKVLKKP
Sbjct: 165 RAIRKKMVETITEEIVKSDLKEVVNKLRPDSIAKEIEKKCQSIYPLHDVFIRKVKVLKKP 224

Query: 136 RFELSKLLELHG-EGKGGATIDESGETVDRPEGYEPPVQEAV 176
           R ++ KL+E H  EG      +E+G  VDRPEGYEPPVQE+V
Sbjct: 225 RMDIGKLMEFHSDEGVTTVVDEETGVQVDRPEGYEPPVQESV 266

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|269969616|sp|A6YPJ8.1|RS3A_TRIIF RecName: Full=40S ribosomal protein S3a gi|149689108|gb|ABR27894.1| 40S ribosomal protein S3a [Triatoma infestans]

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 104/157 (66%), Gaps = 16/157 (10%)

Query: 28  RTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIR 79
           R++ K W  L+        T GYL     L  F +G       S +       T VRQIR
Sbjct: 114 RSMVKKWQTLIEANVDVRTTDGYL-----LRVFCIGFTNKDQLSQRKTCYAQHTQVRQIR 168

Query: 80  KKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFEL 139
           +KMV+ I + +  SDL+ VVNKL+PDSIAK+IEK CQGIYPLHDV+IRKVKVLKKPRFEL
Sbjct: 169 RKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFEL 228

Query: 140 SKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV 176
           SKLLELHG+GKG    DE G  V RPE YEPPVQE+V
Sbjct: 229 SKLLELHGDGKGS---DEPGAKVSRPEAYEPPVQESV 262

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
UNIPROTKB|Q56JV9	264	RPS3A "40S ribosomal protein S	0.755	0.503	0.514	2.7e-29
UNIPROTKB|F2Z4Q5	264	RPS3A "Uncharacterized protein	0.755	0.503	0.514	2.7e-29
UNIPROTKB|D6R9B6	145	RPS3A "Ribosomal protein S3A,	0.755	0.917	0.514	2.7e-29
UNIPROTKB|D6RAT0	227	RPS3A "40S ribosomal protein S	0.755	0.585	0.514	2.7e-29
UNIPROTKB|H0Y9Y4	208	RPS3A "40S ribosomal protein S	0.755	0.639	0.514	2.7e-29
UNIPROTKB|P61247	264	RPS3A "40S ribosomal protein S	0.755	0.503	0.514	2.7e-29
UNIPROTKB|F2Z5C7	264	RPS3A "Uncharacterized protein	0.755	0.503	0.514	2.7e-29
UNIPROTKB|P61246	260	RPS3A "40S ribosomal protein S	0.755	0.511	0.514	2.7e-29
UNIPROTKB|Q4R4Z6	264	RPS3A "40S ribosomal protein S	0.755	0.503	0.514	2.7e-29
UNIPROTKB|G3N262	264	G3N262 "Uncharacterized protei	0.755	0.503	0.507	7.1e-29

UNIPROTKB|Q56JV9 RPS3A "40S ribosomal protein S3a" [Bos taurus (taxid:9913)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:   130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:   185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   245 ETGAKVERADGYEPPVQESV 264

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4Q5 RPS3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:   130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:   185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   245 ETGAKVERADGYEPPVQESV 264

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|D6R9B6 RPS3A "Ribosomal protein S3A, isoform CRA_e" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:    11 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 65

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:    66 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 125

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   126 ETGAKVERADGYEPPVQESV 145

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|D6RAT0 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:    93 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 147

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:   148 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 207

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   208 ETGAKVERADGYEPPVQESV 227

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|H0Y9Y4 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:    74 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 128

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:   129 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 188

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   189 ETGAKVERADGYEPPVQESV 208

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P61247 RPS3A "40S ribosomal protein S3a" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:   130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:   185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   245 ETGAKVERADGYEPPVQESV 264

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;NAS;IMP;TAS

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0006413 "translational initiation" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0003723 "RNA binding" evidence=NAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z5C7 RPS3A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:   130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:   185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   245 ETGAKVERADGYEPPVQESV 264

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61246 RPS3A "40S ribosomal protein S3a" [Felis catus (taxid:9685)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:   126 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 180

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:   181 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 240

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   241 ETGAKVERADGYEPPVQESV 260

GO:0030529 "ribonucleoprotein complex" evidence=ISS

UNIPROTKB|Q4R4Z6 RPS3A "40S ribosomal protein S3a" [Macaca fascicularis (taxid:9541)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/140 (51%), Positives = 88/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:   130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYPLHDVF+RKVK+LKKP+F                 AT D
Sbjct:   185 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   245 ETGAKVERADGYEPPVQESV 264

GO:0030529 "ribonucleoprotein complex" evidence=ISS

UNIPROTKB|G3N262 G3N262 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 71/140 (50%), Positives = 87/140 (62%)

Query:    39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEV 98
             T GYL     L  F +G    R + ++         VRQIRKKM+EI+  EV  +DLKEV
Sbjct:   130 TDGYL-----LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV 184

Query:    99 VNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFXXXXXXXXXXXXXXX--ATID 156
             VNKL+PDSI K+IEK CQ IYP HDVF+RKVK+LKKP+F                 AT D
Sbjct:   185 VNKLIPDSIGKDIEKACQSIYPFHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 244

Query:   157 ESGETVDRPEGYEPPVQEAV 176
             E+G  V+R +GYEPPVQE+V
Sbjct:   245 ETGAKVERADGYEPPVQESV 264

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29CU2	RS3A_DROPS	No assigned EC number	0.525	0.8181	0.5373	yes	N/A
B0KW94	RS3A_CALJA	No assigned EC number	0.5714	0.7556	0.5037	yes	N/A
B5FZS9	RS3A_TAEGU	No assigned EC number	0.5714	0.7556	0.5037	yes	N/A
Q642T2	RS3A_XENTR	No assigned EC number	0.5714	0.7556	0.5037	yes	N/A
P49242	RS3A_RAT	No assigned EC number	0.5857	0.7556	0.5037	yes	N/A
Q6PBY1	RS3A_DANRE	No assigned EC number	0.5244	0.7556	0.4981	yes	N/A
P97351	RS3A_MOUSE	No assigned EC number	0.5857	0.7556	0.5037	yes	N/A
Q56JV9	RS3A_BOVIN	No assigned EC number	0.5928	0.7556	0.5037	yes	N/A
P61247	RS3A_HUMAN	No assigned EC number	0.5928	0.7556	0.5037	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
pfam01015	195	pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family	3e-27
COG1890	214	COG1890, RPS1A, Ribosomal protein S3AE [Translatio	1e-18
PRK04057	203	PRK04057, PRK04057, 30S ribosomal protein S3Ae; Va	3e-11

>gnl|CDD|216245 pfam01015, Ribosomal_S3Ae, Ribosomal S3Ae family

 Score =  101 bits (253), Expect = 3e-27
 Identities = 38/64 (59%), Positives = 45/64 (70%)

Query: 73  THVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVL 132
           +  R IRKKM EII  E  + D KE V KL+P SIAK+IEK  + IYPL  V IRKVKVL
Sbjct: 132 SQKRAIRKKMTEIITKEASELDFKEFVQKLIPGSIAKDIEKAAKKIYPLRRVEIRKVKVL 191

Query: 133 KKPR 136
           K+P+
Sbjct: 192 KRPK 195

Length = 195

>gnl|CDD|224802 COG1890, RPS1A, Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 34/82 (41%), Positives = 47/82 (57%)

Query: 73  THVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVL 132
           +  R IRK M EII  +  +   +E V +L+P  IA EIE+  + IYPL  V IRK KVL
Sbjct: 133 SQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEEAAKKIYPLRKVEIRKSKVL 192

Query: 133 KKPRFELSKLLELHGEGKGGAT 154
           K+P+    +   LHGE +   +
Sbjct: 193 KEPKEAEPEQAVLHGESEEVGS 214

Length = 214

>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated

 Score = 59.1 bits (144), Expect = 3e-11
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 73  THVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVL 132
           +    IRK M EII  +  +   +E V +++   +A EI K+ + IYPL  V IRK KVL
Sbjct: 125 SQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKIYPLRRVEIRKSKVL 184

Query: 133 KKP 135
            +P
Sbjct: 185 ARP 187

Length = 203

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG1628|consensus	249		100.0
PF01015	194	Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: I	100.0
PRK04057	203	30S ribosomal protein S3Ae; Validated	100.0
COG1890	214	RPS1A Ribosomal protein S3AE [Translation, ribosom	100.0

>KOG1628|consensus

Probab=100.00  E-value=2e-54  Score=368.30  Aligned_cols=148  Identities=51%  Similarity=0.791  Sum_probs=138.8

Q ss_pred             CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013         10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK   80 (176)
Q Consensus        10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk   80 (176)
                      .++||+|.|+||+ |+|++|||++||+|+|        +|||+     ||+||++||+++.||.++||||+++|+++||+
T Consensus        89 qgkN~lt~f~GmdlT~dK~~smvkKwqt~ieA~v~vkT~dgy~-----Lrlf~i~ftkk~~nqv~ktsyaq~~qv~~irk  163 (249)
T KOG1628|consen   89 QGKNCLTNFHGMDLTRDKLVSMVKKWQTLIEAVVDVKTTDGYL-----LRLFCIGFTKKLVNQVKKTSYAQHGQVRQIRK  163 (249)
T ss_pred             cCcccceeccCcchhhhhhhhhhhhhhheeeeeEEeecccCce-----EEeeehHHHHHhhcccCCceeeecchHHHHHH
Confidence            4789999999999 9999999999999999        89999     99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhhhhhhhhhccCCCCC--cccCCC
Q psy11013         81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKGG--ATIDES  158 (176)
Q Consensus        81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d~~kl~e~h~e~~~~--~~~~~~  158 (176)
                      +|.+||++|++++||+++||+||||+|+++||++|+.|||||||+|||||+||.|+||||||||||||++++  ++...+
T Consensus       164 ~m~ei~~~evs~~Dlk~vvnKLipd~igKdiEka~~~iyPL~~v~vRKVK~lK~pkfelGkl~eLHGegss~gk~~~~~~  243 (249)
T KOG1628|consen  164 EMMEIMTQEVSTSDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDKT  243 (249)
T ss_pred             HHHHHHHhccccccHHHHHHHhchhhhhhHHHhhccccccchhheeeeeeccccccchhhHHHHHhcccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998643  223334


Q ss_pred             ccee
Q psy11013        159 GETV  162 (176)
Q Consensus       159 g~~v  162 (176)
                      |.++
T Consensus       244 ~a~~  247 (249)
T KOG1628|consen  244 GAKV  247 (249)
T ss_pred             cccc
Confidence            4443

>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.7e-44  Score=299.56  Aligned_cols=113  Identities=43%  Similarity=0.694  Sum_probs=98.8

Q ss_pred             CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013         10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK   80 (176)
Q Consensus        10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk   80 (176)
                      +|+||+|.|+||+ |+||||||||||+|+|        +|||+     ||+||+|||.++         |++||+++||+
T Consensus        73 ~g~~a~T~F~G~elt~D~lrSlvrk~~s~Ie~~~dvkT~DGy~-----lRvf~i~fT~~r---------a~~sq~~~IRk  138 (194)
T PF01015_consen   73 QGNNALTNFHGMELTRDKLRSLVRKWQSRIEAIVDVKTKDGYL-----LRVFCIAFTKKR---------AKSSQIKAIRK  138 (194)
T ss_dssp             ETTEEEEEEEEEE--HHHHHHC--TTC-EEEEEEEEEETTTEE-----EEEEEEEEE-------------TCHHHHHHHH
T ss_pred             cCCEEEEEEcceecchhhhhcceeecceEEEEEEEEEcCCCcE-----EEEEEEEEEeec---------ccchHHHHHHH
Confidence            5779999999999 9999999999999999        89999     999999999999         99999999999


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecch
Q psy11013         81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPR  136 (176)
Q Consensus        81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk  136 (176)
                      +|.++|++++++++|+|||++|++|+|++||+++|++|||||+|+|||||||+.|+
T Consensus       139 ~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~IyPl~~v~IrKvKvlk~Pk  194 (194)
T PF01015_consen  139 KMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKIYPLRNVEIRKVKVLKKPK  194 (194)
T ss_dssp             HHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT--EEEEEEEEEEEEE---
T ss_pred             HHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccccccceEEEEEEEEeccCC
Confidence            99999999999999999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.

>PRK04057 30S ribosomal protein S3Ae; Validated

Probab=100.00  E-value=6.3e-44  Score=298.42  Aligned_cols=115  Identities=26%  Similarity=0.319  Sum_probs=112.0

Q ss_pred             CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013         10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK   80 (176)
Q Consensus        10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk   80 (176)
                      .|+||+|+|+||+ |+||||||||||+|+|        +|||+     ||+||+|||.+|         |++||+++||+
T Consensus        67 ~G~~a~T~F~G~~lTrD~lrSlVrk~~S~Ie~~vdvkTkDGy~-----lRv~~i~~T~~r---------a~~sq~~~IRk  132 (203)
T PRK04057         67 EGDKAYTRFIGHELTRDYLRSLVRRRTSKIDAIVDVTTKDGYK-----VRVKPVALTTKR---------ARTSQKHAIRK  132 (203)
T ss_pred             eCCEEEEEEeeeEecHHHHHhHhccCceeEEEEEEEEcCCCCE-----EEEEEEEEEchh---------hhhhHHHHHHH
Confidence            3569999999999 9999999999999999        99999     999999999999         99999999999


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhh
Q psy11013         81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFE  138 (176)
Q Consensus        81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d  138 (176)
                      +|.++|.+++++++|+|||+++++|+|++||+++|++|||||+|+|||+|||+.|+-.
T Consensus       133 ~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~IyPlr~veIrKvkvl~~p~~~  190 (203)
T PRK04057        133 IMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKIYPLRRVEIRKSKVLARPEEV  190 (203)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhccCcceEEEEEEEEEecCccc
Confidence            9999999999999999999999999999999999999999999999999999999944

>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2e-42  Score=290.69  Aligned_cols=126  Identities=32%  Similarity=0.424  Sum_probs=121.3

Q ss_pred             CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013         10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK   80 (176)
Q Consensus        10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk   80 (176)
                      +|++|+|.|+||+ |+||+|||||||+|+|        +|||.     +|||++|||.+|         |++||.++||+
T Consensus        75 ~G~~a~T~F~GheltrDyiRslVRR~~SrIdai~dVkTkDGy~-----~RV~~~~~T~~r---------a~tSqk~aIRk  140 (214)
T COG1890          75 EGDKALTRFKGHELTRDYIRSLVRRRTSRIDAIVDVKTKDGYV-----LRVKAMAFTRRR---------AKTSQKRAIRK  140 (214)
T ss_pred             cCcEeeEEEeccchhHHHHHHHHhcccceeeeEEEEEecCCcE-----EEEEEEEEEehh---------cccchHHHHHH
Confidence            7899999999999 9999999999999999        89999     999999999999         99999999999


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhhhhhhhhhccCC
Q psy11013         81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEG  149 (176)
Q Consensus        81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d~~kl~e~h~e~  149 (176)
                      +|.|+|.+.+++++|++||++|++|.|+++|+++|++|||||+|+|||+|||+.|..+-....++|+++
T Consensus       141 ~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~~akkIyPLr~veIrK~kvl~~p~~~~~~~~~~~~~~  209 (214)
T COG1890         141 IMFEIIEEKASELTFEEFVQELIPGRIAAEIEEAAKKIYPLRKVEIRKSKVLKEPKEAEPEQAVLHGES  209 (214)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhhcccchheEEEeeeeeccCcccccchhcccccc
Confidence            999999999999999999999999999999999999999999999999999999998866677777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
3u5c_B	255	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-11
2xzm_4	265	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-09
3zey_0	256	High-resolution Cryo-electron Microscopy Structure		6e-06
3j20_A	198	Promiscuous Behavior Of Proteins In Archaeal Riboso		3e-05

>pdb|3U5C|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 255

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 73  THVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVL 132
           +H+R IRK + EI+  EV  S L ++ +KL+P+ I KEIE   + I+PL ++ +RKVK+L
Sbjct: 159 SHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLL 218
Query: 133 KKPRF 137
           K+P+F
Sbjct: 219 KQPKF 223

>pdb|2XZM|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 265

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 73  THVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVL 132
           + VR IR+K+   I NE  K  + E    L+ +   K+IEK+ + I+PL ++ IRKVKVL
Sbjct: 165 SQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVL 224
Query: 133 KKPRF 137
           K+P+ 
Sbjct: 225 KRPKL 229

>pdb|3ZEY|0 Chain 0, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 256

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 75  VRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKK 134
           V+ +R +   II   + K D+ + V+ L  + +   + K+C  I PL D+ IRKVKV++ 
Sbjct: 163 VKWVRMRATNIIRRRLAKLDINDAVSLLTRNILRDRLAKRCNPIIPLRDLRIRKVKVIRT 222
Query: 135 PRFXXXXXXXXXXXXXXXATIDESGETVDRPEGYEPPVQEA 175
           P+F               A I   GE     EG    V+EA
Sbjct: 223 PKF------------DAQALIAAHGEVPTSAEGEARVVEEA 251

>pdb|3J20|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 198

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 76  RQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKP 135
           R IRK M EII  +  + + K+ V + +   IA EI K+ + IYPL    IRK+KVL++P
Sbjct: 135 RAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEP 194
Query: 136 R 136
           +
Sbjct: 195 Q 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	2e-34
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	4e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B Length = 255

 Score =  121 bits (303), Expect = 2e-34
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 7/104 (6%)

Query: 73  THVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVL 132
           +H+R IRK + EI+  EV  S L ++ +KL+P+ I KEIE   + I+PL ++ +RKVK+L
Sbjct: 159 SHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLL 218

Query: 133 KKPRFELSKLLELHGEGKGGATIDESGETVDRPEGYEPPVQEAV 176
           K+P+F++  L+ LHGEG G        E   +  G++  V E V
Sbjct: 219 KQPKFDVGALMALHGEGSG-------EEKGKKVTGFKDEVLETV 255

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4 Length = 265

 Score =  109 bits (274), Expect = 4e-30
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 73  THVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVL 132
           + VR IR+K+   I NE  K  + E    L+ +   K+IEK+ + I+PL ++ IRKVKVL
Sbjct: 165 SQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVL 224

Query: 133 KKPRFELSKLLELHGEGKGGATI-DESGETVDRPE 166
           K+P+ + +K+ EL+   K G       G   ++  
Sbjct: 225 KRPKLDATKIAELYSHEKKGEKATGRDGAPEEQAA 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 29/123 (23%)

Query: 32  KNW-----MKLMTTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQ---LFKTHVRQIRKKMV 83
            NW      KL T     +  SLN        P  +  + ++    +F      I   ++
Sbjct: 345 DNWKHVNCDKLTTI----IESSLNVL-----EP--AEYRKMFDRLSVFPPSAH-IPTILL 392

Query: 84  EIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLL 143
            +I  +V+KSD+  VVNKL   S+ +  ++  +    +  +++         + +L    
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSIYLEL-------KVKLENEY 443

Query: 144 ELH 146
            LH
Sbjct: 444 ALH 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	100.0
2xzm_4	265	40S ribosomal protein S3A; ribosome, translation;	100.0
3j20_A	198	30S ribosomal protein S3AE; archaea, archaeal, KIN	100.0

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B

Probab=100.00  E-value=9.6e-65  Score=434.56  Aligned_cols=155  Identities=32%  Similarity=0.602  Sum_probs=131.4

Q ss_pred             CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013         10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK   80 (176)
Q Consensus        10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk   80 (176)
                      .|+||+|+|+||+ |+||||||||||+|+|        +|||+     ||+||||||++|+||.+|||||++||+++||+
T Consensus        92 ~G~~~lT~F~GmdlT~DklrSlVrKw~s~Iea~vdVkT~DGy~-----lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRk  166 (255)
T 3u5c_B           92 QGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYV-----LRIFAIAFTRKQANQVKRHSYAQSSHIRAIRK  166 (255)
T ss_dssp             ETTEECCEEEEECCCHHHHHHHCCTTSCEEECCEEEECSSSCE-----EEECCEEECCCCTTCCSSCCCCCSHHHHHHHH
T ss_pred             cCCEEEEEEcceeechhhhhhhccccceEEEEEEEEEecCCCE-----EEEEEEEEEcccccccccceechHhHHHHHHH
Confidence            4679999999999 9999999999999999        89999     99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhhhhhhhhhccCCCCCcccCCCcc
Q psy11013         81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKGGATIDESGE  160 (176)
Q Consensus        81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d~~kl~e~h~e~~~~~~~~~~g~  160 (176)
                      +|+|+|+++++++||+|||++|+||+|++||+++|++|||||+|+|||||||+.|+||+++|||+|||++    +++.|+
T Consensus       167 km~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~IyPL~~V~IrKvKvLk~Pk~d~~kl~e~hg~~~----~~~~g~  242 (255)
T 3u5c_B          167 VISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGS----GEEKGK  242 (255)
T ss_dssp             HHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTCCCEEEECCCEEEEECCCCCHHHHGGGCC-------------
T ss_pred             HHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccccccceEEEEEEEEeecCcccHhHHHhhhcCCC----CCcCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985    256799


Q ss_pred             eeeCCCCCCCCCccCC
Q psy11013        161 TVDRPEGYEPPVQEAV  176 (176)
Q Consensus       161 ~v~~~~~~e~~~~~~v  176 (176)
                      +|+   +||||||++|
T Consensus       243 ~v~---~~~~~~~~~~  255 (255)
T 3u5c_B          243 KVT---GFKDEVLETV  255 (255)
T ss_dssp             ----------------
T ss_pred             ccc---ccCCcccccC
Confidence            998   7999999987

>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4

Probab=100.00  E-value=1.2e-58  Score=398.23  Aligned_cols=136  Identities=28%  Similarity=0.479  Sum_probs=121.5

Q ss_pred             CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCC---CCCcceeeccchhhHH
Q psy11013         10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRG---SSLKLVYQLFKTHVRQ   77 (176)
Q Consensus        10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~---~q~kkt~Ya~~SQvr~   77 (176)
                      .|+||+|+|+||+ |+||||||||||+|+|        +|||+     |||||||||++|.   ||.+|||||++||+++
T Consensus        95 ~G~nalT~F~GmdlTrDklrSlVrKw~s~Iea~vdVkT~DGY~-----lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~  169 (265)
T 2xzm_4           95 DGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYI-----IRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRA  169 (265)
T ss_dssp             CSSCEEEEEEEEECCHHHHHHSCCTTBCEEEEEEEEEETTTEE-----EEEEEEEEECCCSSCCSCSSCCBCCTHHHHHH
T ss_pred             cCCEEEEEEeeeeccHHHhhhhhcccceeEEEEEEEEeCCCcE-----EEEEEEEEEecccccccccceeeeccccchHH
Confidence            4679999999999 9999999999999999        89999     9999999999999   9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhhhhhhhhhccCCC
Q psy11013         78 IRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGK  150 (176)
Q Consensus        78 IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d~~kl~e~h~e~~  150 (176)
                      ||++|+|+|+++++++||+|||++|++|+|++||+++|++|||||+|+|||||||+.|+||+++|||+||+++
T Consensus       170 IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k~IyPL~~V~IrKvKvLk~Pk~~~~~l~e~hg~~~  242 (265)
T 2xzm_4          170 IRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSHEK  242 (265)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHTTTCCEEEEEEEEEEEEECCCC-------------
T ss_pred             HHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhhhccccceEEEEEEEEEecCchHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999985

>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.5e-47  Score=316.76  Aligned_cols=115  Identities=28%  Similarity=0.382  Sum_probs=112.2

Q ss_pred             CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013         10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK   80 (176)
Q Consensus        10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk   80 (176)
                      .|+||+|+|+||+ |+||||||||||+|+|        +|||+     ||+||+|||+++         |++||+++||+
T Consensus        74 ~G~~a~T~F~G~~lT~DklrSlVrk~~s~Iea~vdVkT~DGy~-----lRvf~i~fT~kr---------a~~sQ~~~IRk  139 (198)
T 3j20_A           74 KGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYK-----LRVMAMAIAMRR---------IQTSQERAIRK  139 (198)
T ss_dssp             SSSEEEEEEEEECCCHHHHHHHCCSSSCEEEEEEEEECTTSCE-----EEEEEEEEECSS---------CCCTHHHHHHH
T ss_pred             cCCEEEEEEcceeechhhhhhheecceeEEEEEEEEEecCCCE-----EEEEEEEEEecc---------ccchhhhHHHH
Confidence            4569999999999 9999999999999999        89999     999999999998         99999999999


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhh
Q psy11013         81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFE  138 (176)
Q Consensus        81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d  138 (176)
                      +|.|+|+++++++||+|||++|++|+|++||+++|++|||||+|+|||||||+.|+|-
T Consensus       140 ~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~IyPl~~V~IrKvKvlk~Pk~~  197 (198)
T 3j20_A          140 IMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQVI  197 (198)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHHSCEEEEEEEEEEEEECSCSC
T ss_pred             HHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCcccccceEEEEEEEEeeccCcc
Confidence            9999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00