Psyllid ID: psy11025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFETPEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAASTVLEKGAKSLEELKPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEINSHMD
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccccccccHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccEEccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccccccccccccccccccHcccccccEccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHcHHHHHHcccccccccccccccccccccccEEEccccccccHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHcccccccccccccccccEcccccccccccccccccccccccccccccccccccccHccHcHcccccHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHcHcccccHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHccccc
Coil and Loop (DISEMBL)
mdveysrlardlplpsatcatprpasirqnaapsyvsprdAEQKIAEIIErdffpdleklHAQNDFLDAMELNDVQKLRELYAKysnstpyvdrcesspatfetpehftsleeagsadheasvrsqgscsskkstsgkyQSLNEFLsthtsednqSFEDIIEHAKKkhrikypwlycgedeapentsrflelpsMQEQIDQakdkdrdrRIQTWKFVnknsamytpdgveltKDEQIEMARNRMSinhsgtrlhvnpfdeqqSKEALHDLAKTQAIsslsgkigvdgkeitlnstprnrEAASTVLEKGAKSLEELKPDAALTLYSRAadvahgedNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAadvahgedNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEwgncceapercesgsssfsfslgkagyhqESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEwgncceapeinshmd
Flexible Loop (DISEMBL)
mdveysrlardlplpsatcatprpasirqnaapsyvspRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFETPEHFTSLEEAGSADHEasvrsqgscsskkstsgKYQSLNEFLSthtsednqSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQidqakdkdrdrriqtwkfvnknsamytpdgvelTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAisslsgkigvdgkeitlnstprnreaASTVLEKGAKSLEELKPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEwgncceapeinshmd
Low Complexity Region (SEG)
MDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFETPEHFTSLEEAGSADHEAsvrsqgscsskkstsgkYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAASTVLEKGAKSLEELKPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRlavalvlvqlaRGDTVAAEKAFKEWGNCCEAPERCEsgsssfsfsLGKAGYHQESEHLLAIGRlavalvlvqlaRGDTVAAEKAFKEWGNCCEAPEINSHMD
Disordered region (IsUnstruct)
********************************************IAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYV*******************************************************************IIEHAKKKHRIKYPWLYCG*********************************QTWKFVNK*******************************************************************************************************TLY*********************************************ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPE*********SFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE*********
Disordered Region (DISOPRED)
**************************************RDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDV*******************************************************************NEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPW**************************************TWKFVNKNSAMYTPD***************************************************************************************************RAADVAHGEDNYKQA*****************************ALTLYSRAA**************YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE*********
Disordered Region (DISEMBL)
********ARDLPLPSATCATPRPASIR************AEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFETPEHFTSL****************************QSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQ************RRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAASTVLEKGAKSLEELKPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP************SLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEINSHMD
Disordered Region (DISPRO)
*********************PRPAS*****APSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSN***************************************************YQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLH****************************I*VDGKE*TLNSTPRNREAASTVLEKGAKSLEELKPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVEYSRLARDLPLPSATCATPRPASIRQNAAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFETPEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAASTVLEKGAKSLEELKPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPEINSHMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	535	2.2.26 [Sep-21-2011]
O44424	501	Protein DGCR14 homolog OS	yes	N/A	0.525	0.560	0.359	7e-38
Q96DF8	476	Protein DGCR14 OS=Homo sa	yes	N/A	0.441	0.495	0.347	1e-33
O70279	479	Protein DGCR14 OS=Mus mus	yes	N/A	0.431	0.482	0.359	1e-33
P34420	531	ES2 similar protein 2 OS=	yes	N/A	0.439	0.442	0.283	6e-19
Q9CWZ7	312	Gamma-soluble NSF attachm	no	N/A	0.201	0.346	0.351	2e-10
P81127	312	Gamma-soluble NSF attachm	no	N/A	0.201	0.346	0.351	2e-10
Q99747	312	Gamma-soluble NSF attachm	no	N/A	0.201	0.346	0.351	2e-10
O59793	384	Stress response protein b	yes	N/A	0.291	0.406	0.273	0.0001

>sp|O44424|DGC14_DROME Protein DGCR14 homolog OS=Drosophila melanogaster GN=Es2 PE=1 SV=2

 Score =  159 bits (401), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 159/298 (53%), Gaps = 17/298 (5%)

Query: 25  ASIRQNAAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAK 84
           A +R    P  ++     +++++II+RDFFPDLE+L AQND+LDA    D  ++ E+  +
Sbjct: 40  AMVRHKNKPKILTEEKYIEEMSKIIQRDFFPDLERLRAQNDYLDAESRRDFVQMAEIRER 99

Query: 85  YS-NSTPYVDRCES------SPATFETPEH-----FTSLEEAGSADHEASV-RSQGSCSS 131
           YS        R  S      SPATFETP        T L  + + D   S   S+ S + 
Sbjct: 100 YSLGRISGTGRSTSRRNNAMSPATFETPVSQAKCSNTPLPNSRATDTPFSTDGSEKSDAE 159

Query: 132 KKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLE 191
            + T+ K  SL+ FL  +TSEDNQSF++IIE A+ K R KY  LY  E  + E   R L 
Sbjct: 160 GRDTTAKL-SLDAFLQKYTSEDNQSFQEIIETAEAKLRQKYAVLYNHEKLSAEQLQRALM 218

Query: 192 LPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGT 251
           LPS++ Q ++    D  R+I+TW + N NS MY PDGVE T++E++++A  + SI H+ T
Sbjct: 219 LPSIETQFEEP---DPLRKIETWNYTNMNSIMYVPDGVEYTEEERVQLAERKQSIQHNAT 275

Query: 252 RLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAASTVLEKG 309
           RL       +   + L+D          +    V G ++  + +PR  EA S ++  G
Sbjct: 276 RLPDEAKHREMDTKKLNDEVPQNGAGGATATPKVRGFDLLRSPSPRPGEAFSPIMTWG 333

Drosophila melanogaster (taxid: 7227)

>sp|Q96DF8|DGC14_HUMAN Protein DGCR14 OS=Homo sapiens GN=DGCR14 PE=1 SV=1

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 138/259 (53%), Gaps = 23/259 (8%)

Query: 48  IIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNS---------TPYVDRCESS 98
           +I+RDFFPD+EKL AQ ++L+A E  D++++R++  K+ ++          PYV     +
Sbjct: 50  VIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKMSREPPPPYV-----T 104

Query: 99  PATFETPEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDNQSFE 158
           PATFETPE        G+         +   + ++       SL+ FLS +TSEDN SF+
Sbjct: 105 PATFETPEVHAGTGVVGNKPRPRGRGLEDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQ 164

Query: 159 DIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVN 218
           +I+E AK++ R ++ WLY  E+E  +     LELPS + Q  ++        ++TWK+  
Sbjct: 165 EIMEVAKERSRARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQAS----VETWKYKA 220

Query: 219 KNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISS 278
           KNS MY P+GV    DE+    + R  + H  TR   +PF +  S+  L   A   A   
Sbjct: 221 KNSLMYYPEGV---PDEEQLFKKPRQVV-HKNTRFLRDPFSQALSRCQLQQAAALNA-QH 275

Query: 279 LSGKIGVDGKEITLNSTPR 297
             GK+G DGKE+    +PR
Sbjct: 276 KQGKVGPDGKELIPQESPR 294

May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|O70279|DGC14_MOUSE Protein DGCR14 OS=Mus musculus GN=Dgcr14 PE=2 SV=2

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/264 (35%), Positives = 141/264 (53%), Gaps = 33/264 (12%)

Query: 48  IIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNS---------TPYVDRCESS 98
           +I+RDFFPD+EKL AQ ++L+A E  D++++R++  K+ ++          PYV     +
Sbjct: 53  VIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKISREPPPPYV-----T 107

Query: 99  PATFETPEHFTSLEEAGSADHEASVRSQG-----SCSSKKSTSGKYQSLNEFLSTHTSED 153
           PATFETPE        GSA      R QG       + ++       SL+ FLS +TSED
Sbjct: 108 PATFETPEV-----HPGSAVLGNKPRPQGRDLDDGEAGEEEEKEPLPSLDVFLSQYTSED 162

Query: 154 NQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQT 213
           N SF++I+E AK+K   ++ WLY  E+E  +     LELPS + Q  ++        ++T
Sbjct: 163 NASFQEIMEVAKEKSHARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQAG----VET 218

Query: 214 WKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKT 273
           WK+  KNS MY P+GV    DE+ ++ +    I H  TR   +PF +  S+  L   A  
Sbjct: 219 WKYKAKNSLMYYPEGV---PDEE-QLFKKPRQIVHKNTRFLRDPFSQALSRSQLQQAAAL 274

Query: 274 QAISSLSGKIGVDGKEITLNSTPR 297
            A     GK+G DGKE+    +PR
Sbjct: 275 NA-QHKQGKVGPDGKELIPQESPR 297

May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|P34420|DGC14_CAEEL ES2 similar protein 2 OS=Caenorhabditis elegans GN=ess-2 PE=3 SV=2

 Score = 96.3 bits (238), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 133/279 (47%), Gaps = 44/279 (15%)

Query: 47  EIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKY-SNSTPYVDRCESSPATFETP 105
           +IIE+D+FP L+K+ AQ ++L+A+   D+ K++EL  K+ S  +   DR   +P T  + 
Sbjct: 53  KIIEKDYFPHLKKMQAQKEYLEAVANKDINKIKELQMKFCSTGSVRTDRSFRTPITTRS- 111

Query: 106 EHFTSLEEAGSADHEASVRSQGSCSSK----------KSTSGKYQSLN------------ 143
              T   +  S D +    S  S SS            +  G  ++LN            
Sbjct: 112 --TTEAPDVSSFDADTPGPSSASTSSAHDWMQSPMPFANEEGDNEALNRKRKKKKEETLT 169

Query: 144 EFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPS---MQEQID 200
            +L+ +TSEDN SFE++ +  +++   + PW+Y  E+E  +N      + +   +Q  + 
Sbjct: 170 SYLNKYTSEDNASFEELAKVMREREDARRPWVYKAEEEHNKNLVTRQAIAAEADVQLALK 229

Query: 201 QAKDKDRDR--RIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMS-INHSGTRL---- 253
            A D D +R   +  W +   N+ ++ PDG  LT  E  + AR + + IN  GTR     
Sbjct: 230 HAVDADDNRPLNVDNWAYKAWNTVLFNPDGAALTPAEIADAARKQQTEINKRGTRFPDSG 289

Query: 254 HVNPFDEQQSKEAL-HDLAKTQAISSLSGKIGVDGKEIT 291
            + P DE  ++ A+ H LA        +GK+   G E+T
Sbjct: 290 KLKPSDEAMTRAAVSHALAN-------AGKVDFLGNEVT 321

Caenorhabditis elegans (taxid: 6239)

>sp|Q9CWZ7|SNAG_MOUSE Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 64/108 (59%)

Query: 350 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 409
           + A+  LE+  K +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD
Sbjct: 112 DTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFD 171

Query: 410 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457
           +AA  I++E   ++E E+     +  +A VLV L R D VAAE+  +E
Sbjct: 172 EAALSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRE 219

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|P81127|SNAG_BOVIN Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1 SV=3

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 64/108 (59%)

Query: 350 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 409
           + A+  LE+  K +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD
Sbjct: 112 DTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFD 171

Query: 410 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457
           +AA  I++E   ++E E+     +  +A VLV L R D VAAE+  +E
Sbjct: 172 EAAISIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRE 219

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Bos taurus (taxid: 9913)

>sp|Q99747|SNAG_HUMAN Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 64/108 (59%)

Query: 350 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 409
           + A+  LE+  K +E +  + A+ LY + A+V   E+  +QA E + +A+R+ VR + FD
Sbjct: 112 DTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFD 171

Query: 410 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457
           +AA  I++E   ++E E+     +  +A VLV L R D VAAE+  +E
Sbjct: 172 EAALSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDYVAAERCVRE 219

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Homo sapiens (taxid: 9606)

>sp|O59793|BIS1_SCHPO Stress response protein bis1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bis1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 34/190 (17%)

Query: 45  IAEIIERDFFPDLEKLHAQNDF-------LDAMELNDVQKLRELYAKYSNSTPYVDRCES 97
           ++ II++ +FPDL KL A+           DA   +  +KL+ L AK S   P   R  S
Sbjct: 39  LSYIIQQQYFPDLPKLKAEVVLESEEVGSFDAQNESRDEKLKYLIAKNSED-PLRKRLPS 97

Query: 98  SPATFETPEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDNQSF 157
                              A HE + ++Q    +K  +   YQ  N+F    TSEDN SF
Sbjct: 98  L------------------AIHEIT-KAQLDGENKPISVASYQ--NKF----TSEDNASF 132

Query: 158 EDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFV 217
            +++E   +    ++   +    + P N+ + +   S  + I     K++D+ I+TW + 
Sbjct: 133 GELMEDESRLRAEQHKRRFGVHSQQPSNSIQTIGY-SNSDAIKSIAWKEKDKSIKTWNYQ 191

Query: 218 NKNSAMYTPD 227
            KN+ MYTP+
Sbjct: 192 PKNALMYTPE 201

Has a role in maintaining cell viability during stationary phase induced by stress response.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
193290156	491	nuclear protein Es2 [Nasonia vitripennis	0.560	0.610	0.456	3e-60
158302181	504	AGAP001347-PA [Anopheles gambiae str. PE	0.461	0.490	0.488	2e-58
307182244	850	Protein DGCR14-like protein [Camponotus	0.465	0.292	0.453	4e-57
312371095	503	hypothetical protein AND_22644 [Anophele	0.463	0.493	0.478	7e-57
307209873	543	Protein DGCR14-like protein [Harpegnatho	0.459	0.453	0.453	1e-55
383852117	987	PREDICTED: uncharacterized protein LOC10	0.463	0.251	0.457	3e-54
332018817	683	Protein DGCR14-like protein [Acromyrmex	0.461	0.361	0.429	1e-52
380026599	947	PREDICTED: uncharacterized protein LOC10	0.446	0.252	0.433	3e-52
328789705	948	PREDICTED: hypothetical protein LOC41231	0.444	0.251	0.428	1e-51
189238578	454	PREDICTED: similar to es2 protein [Tribo	0.442	0.522	0.443	1e-50

>gi|193290156|ref|NP_001123264.1| nuclear protein Es2 [Nasonia vitripennis]

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 153/335 (45%), Positives = 198/335 (59%), Gaps = 35/335 (10%)

Query: 1   MDVEYSRLARDLPLPSATCATPRPASIRQNAA----PSYVSPRDAEQKIAEIIERDFFPD 56
           M +E ++  +DL    A   TPR  + R  A      +YV      +KI EII+RDFFPD
Sbjct: 20  MALETAKNMKDL----AIFKTPRGPAKRSKAKVLDEETYV------EKIGEIIQRDFFPD 69

Query: 57  LEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFETPEHFTSLEEAGS 116
           LEKL AQN+++DA+E ND +K+REL+ KYS   P      +SPATFETP H    +E  S
Sbjct: 70  LEKLKAQNEYIDALESNDTKKMRELFEKYSFERPRTSERLASPATFETPVH----KENSS 125

Query: 117 ADHEASVRSQGSCSSKKS-TSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWL 175
            D   S  S  SC +K+  T  +   L+EFLST+TSEDN SFE+I+   +KKHR+KY WL
Sbjct: 126 EDTPKSTAST-SCKAKEPKTEERRVGLDEFLSTNTSEDNASFEEIVFENEKKHRLKYAWL 184

Query: 176 YCGEDE----APENTS-RFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVE 230
           Y  E E    A EN S R L        I+  K K+R  +I TW + NKN  MY PDGVE
Sbjct: 185 YKTETEPNILAIENNSDRLL-------AIENGK-KNRPFQIDTWSYKNKNYIMYIPDGVE 236

Query: 231 LTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEI 290
           LT +E+IEMA+ R  + H  TRL VNPF+EQQ+KE + +LAK Q+ ++  GKIGVDGKEI
Sbjct: 237 LTTEEKIEMAKKRQEVIHYNTRLKVNPFNEQQNKETISELAKIQSKAN-DGKIGVDGKEI 295

Query: 291 TLNSTPRNREAASTVLEKGAKSLEELKPDAALTLY 325
               TPR              S+ E+ PD+ L  +
Sbjct: 296 VRTETPRINGYTILATPTPTPSIPEI-PDSPLMTW 329

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158302181|ref|XP_321797.4| AGAP001347-PA [Anopheles gambiae str. PEST] gi|157012827|gb|EAA01147.4| AGAP001347-PA [Anopheles gambiae str. PEST]

 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/262 (48%), Positives = 177/262 (67%), Gaps = 15/262 (5%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATF 102
           Q++ +II+RDFFPDL+KL AQN++LDA+  NDV KLR++++KYS+  P   R  +SPATF
Sbjct: 45  QEMGKIIQRDFFPDLQKLKAQNEYLDALASNDVCKLRQIFSKYSSKRPNSSRV-ASPATF 103

Query: 103 ETPEHFTSLEEAGSA-DHEASVRSQGSCSSKKSTS--GKYQSLNEFLSTHTSEDNQSFED 159
           ETP     L EA  A +   S+RS  S  S KST   G   SL+ FL T+TSEDN SF++
Sbjct: 104 ETP-----LPEATPASEAPPSIRSTSSVGSNKSTKTLGDKHSLDSFLQTYTSEDNDSFQE 158

Query: 160 IIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNK 219
           IIE A +K R K+  LY  E        + L LPS+++Q +Q   ++R +++  W++ NK
Sbjct: 159 IIETADRKLRQKFAVLYQAEGTTAIEMGKCLALPSIEQQFNQ---QERPKQLDMWRYTNK 215

Query: 220 NSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSL 279
           N  MYTPDGVELTK+EQ+EMA+ +  INH+ TRLH NPF+EQ S++A+ + AKTQA   L
Sbjct: 216 NYIMYTPDGVELTKEEQLEMAKRKQEINHNSTRLHHNPFNEQDSRQAIVEAAKTQA-KHL 274

Query: 280 SGKIGVDGKEI--TLNSTPRNR 299
             KIGVDG+ +  +L  +P+ R
Sbjct: 275 PEKIGVDGRVVDQSLGESPQVR 296

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182244|gb|EFN69575.1| Protein DGCR14-like protein [Camponotus floridanus]

 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 173/256 (67%), Gaps = 7/256 (2%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATF 102
           +K++EII+RDFFP LEKL AQN++LDA+E ND++++RELYAKYS+  P  +R   SPATF
Sbjct: 46  EKMSEIIQRDFFPHLEKLQAQNEYLDALEQNDIKRMRELYAKYSSGRPVTER-PVSPATF 104

Query: 103 ETPEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDNQSFEDIIE 162
           ETP+     +E       +S  +    + K S       L+++LS+HTSEDN SFE+++ 
Sbjct: 105 ETPQRRAESDELPCTSEVSSQETPVEYAKKDSKEENKTGLDDYLSSHTSEDNASFEEMMV 164

Query: 163 HAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKD-RDRRIQTWKFVNKNS 221
            A+ K ++KY WLY    EA E +  +L +      +   +  + R +++ +W + NKN 
Sbjct: 165 EAENKRKLKYAWLY----EAEEKSKAWLTIDKPTTDVLAIEGSNSRPKQVDSWTYKNKNY 220

Query: 222 AMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSG 281
            MY PDGVELT +E+IE+A+N+ S+ H  TRL +NPF+EQQ+KE +++LAK+Q+ ++  G
Sbjct: 221 IMYIPDGVELTAEEKIELAKNKQSVTHENTRLRINPFNEQQNKETINELAKSQSRAN-DG 279

Query: 282 KIGVDGKEITLNSTPR 297
           KIGVDGKE+  N+TPR
Sbjct: 280 KIGVDGKEVVRNATPR 295

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371095|gb|EFR19358.1| hypothetical protein AND_22644 [Anopheles darlingi]

 Score =  228 bits (580), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 125/261 (47%), Positives = 173/261 (66%), Gaps = 13/261 (4%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATF 102
           Q++ +II+RDFFPDL+KL AQN++LDA+  NDV KLR++++KY++  P       SPATF
Sbjct: 46  QEMGKIIQRDFFPDLQKLKAQNEYLDALANNDVGKLRQIFSKYNSKLPPNSARIPSPATF 105

Query: 103 ETPEHFTSLEEAGSA-DHEASVRSQGSCSSKKSTS--GKYQSLNEFLSTHTSEDNQSFED 159
           ETP     L  A  A +  AS+RS  S  S KST   G   SL+ FL ++TSEDN SF++
Sbjct: 106 ETP-----LPNATPATEAPASIRSTSSVGSNKSTKSIGDKHSLDSFLQSYTSEDNDSFQE 160

Query: 160 IIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNK 219
           IIE A +K R K+  LY  E       +  L LPS+++Q D+   +++ +++  W + NK
Sbjct: 161 IIESADRKLRQKFAVLYAAESSTAIQMNECLALPSIEQQFDK---REKPKQLDMWSYTNK 217

Query: 220 NSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSL 279
           N  MYTP+GVELTK+EQ+EMA+ +  INHS TRLH NPF+EQ SK+A+ + AKTQA   L
Sbjct: 218 NYIMYTPEGVELTKEEQLEMAKLKQEINHSSTRLHHNPFNEQDSKQAIVEAAKTQA-KHL 276

Query: 280 SGKIGVDGKEI-TLNSTPRNR 299
             KIG+DG+ + T   TP+ R
Sbjct: 277 PEKIGIDGRVVDTSTGTPKIR 297

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209873|gb|EFN86652.1| Protein DGCR14-like protein [Harpegnathos saltator]

 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 170/258 (65%), Gaps = 12/258 (4%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATF 102
           +K+ EII+RDFFP LE+L AQN +LDA+E NDV+++RELYAKYS+  P  +R   SPATF
Sbjct: 105 EKMGEIIQRDFFPHLERLQAQNQYLDALEQNDVKRMRELYAKYSSGRPVTER-PVSPATF 163

Query: 103 ETPEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQS---LNEFLSTHTSEDNQSFED 159
           ETP+    L+E     H   V  Q   +  K    K ++   L+++LSTHTSEDN SFE+
Sbjct: 164 ETPQRRVELDEL---PHTPEVTPQEIPTESKKKDDKAENKTGLDDYLSTHTSEDNASFEE 220

Query: 160 IIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNK 219
           ++  A+ K R+K+ WLY    EA E +  +L + +  + +       R +++ +W + NK
Sbjct: 221 MMVEAENKRRLKHAWLY----EAEEKSKAWLAIANTTDPLAIEGSSSRPKQVDSWAYRNK 276

Query: 220 NSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSL 279
           N  MY PDGVE T +E+IE+A+ +  + H  TRL  NPF+EQQ+KE +++LAKTQ+ ++ 
Sbjct: 277 NYIMYIPDGVEPTAEEKIELAKKKQQVMHENTRLRTNPFNEQQNKETINELAKTQSKAN- 335

Query: 280 SGKIGVDGKEITLNSTPR 297
            GKIGVDGKE+  N+TP+
Sbjct: 336 DGKIGVDGKEVVRNATPQ 353

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852117|ref|XP_003701575.1| PREDICTED: uncharacterized protein LOC100875510 [Megachile rotundata]

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/256 (45%), Positives = 174/256 (67%), Gaps = 8/256 (3%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATF 102
           +++ EII+RDFFP L+KL AQN +LDA+E NDV+K+RE+Y KYS+  P  +R  +SPATF
Sbjct: 46  KRMGEIIQRDFFPHLDKLQAQNQYLDALEQNDVKKMREIYEKYSSGRPATER-PASPATF 104

Query: 103 ETPEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQS-LNEFLSTHTSEDNQSFEDII 161
           ETP + T  E+      + S  +  + +SK +   + ++ L+ +LSTHTSEDN SFE+++
Sbjct: 105 ETPMNKTESEDEQFKPTKPSEDAPANVTSKDNDKMEIKTGLDAYLSTHTSEDNASFEEMM 164

Query: 162 EHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNS 221
             A+KK ++K+ WLY    EA EN S+ L   +  + +      ++  ++ +W + NKN 
Sbjct: 165 VEAEKKLKLKFAWLY----EAEEN-SKALTNKADSDILAIENGNEKPNQLDSWAYKNKNY 219

Query: 222 AMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSG 281
            MY PDGVELT DE+I++A+ R  + H  TRL +NPF+EQQ+KE +++LAK+Q+ ++  G
Sbjct: 220 IMYVPDGVELTPDERIDLAKKRQMVVHENTRLRINPFNEQQNKETINELAKSQSKAN-DG 278

Query: 282 KIGVDGKEITLNSTPR 297
           KIGVDGKEI  N TPR
Sbjct: 279 KIGVDGKEIVRNPTPR 294

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018817|gb|EGI59376.1| Protein DGCR14-like protein [Acromyrmex echinatior]

 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/261 (42%), Positives = 171/261 (65%), Gaps = 14/261 (5%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATF 102
           +K+++II++DFFP LEKL AQN +L+A+E ND+ ++RELYAKYS+  P  +R   SPATF
Sbjct: 242 EKMSDIIQKDFFPHLEKLQAQNQYLEALEQNDMNRMRELYAKYSSGRPVTER-PVSPATF 300

Query: 103 ETPEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDNQSFEDIIE 162
           ETP   T   E+      +S +S    S  ++ +     L+++LS HTSEDN SFE+++ 
Sbjct: 301 ETPLRRTESAESPPTTEASSQKSDIVESVNRNDTESKIGLDDYLSNHTSEDNASFEEMMI 360

Query: 163 HAKKKHRIKYPWLYCGEDEAPE------NTSRFLELPSMQEQIDQAKDKDRDRRIQTWKF 216
            A+ K ++KY WLY  ED++        +++   ++P++Q          R +++ +W +
Sbjct: 361 EAENKRKLKYAWLYEAEDKSKAWLAIDGSSTTTPDVPAIQ------GSNLRPKQVDSWTY 414

Query: 217 VNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAI 276
            NKN  MY PDGV+LT  E+IE+A+ + +I H  TRL  NPF+EQQ+KE + +LAK+Q+ 
Sbjct: 415 KNKNYIMYIPDGVDLTAGEKIELAKKKQTIMHENTRLRTNPFNEQQNKETIDELAKSQSR 474

Query: 277 SSLSGKIGVDGKEITLNSTPR 297
           ++  GKIGVDGKE+  N+TPR
Sbjct: 475 AN-DGKIGVDGKEVVRNATPR 494

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026599|ref|XP_003697035.1| PREDICTED: uncharacterized protein LOC100863586 [Apis florea]

 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/263 (43%), Positives = 168/263 (63%), Gaps = 24/263 (9%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATF 102
           +++ EII+RDFFP L+KL AQN +LDA+E NDV+++RELY KYS+  P  +R  +SPATF
Sbjct: 46  KRMGEIIQRDFFPHLDKLQAQNQYLDALEQNDVKRMRELYEKYSSGRPTTER-PASPATF 104

Query: 103 ETP--------EHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDN 154
           ETP        E F S +E+     +  ++        K  +     L+ +LSTHTSEDN
Sbjct: 105 ETPMNKIESEDEQFKSSKESKDTPVDKIIKD-------KDKTELISGLDAYLSTHTSEDN 157

Query: 155 QSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTW 214
            SFE+++  A+K+ ++K+ WLY  E+      S+ L+     + +  A + D   ++ +W
Sbjct: 158 ASFEEMMIEAEKRLKLKFAWLYKAEE-----NSKILKNDKNSDIL--ALENDNKNQLDSW 210

Query: 215 KFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQ 274
            + NKN  MY PDGVELT DE+I++A+ +  + H  TRL +NPF+EQQ+KE +++LAK Q
Sbjct: 211 SYKNKNYIMYVPDGVELTPDERIDLAKKKQIVVHENTRLRINPFNEQQNKETINELAKNQ 270

Query: 275 AISSLSGKIGVDGKEITLNSTPR 297
           + ++  GKIGVDGKEI  N TPR
Sbjct: 271 SKAN-DGKIGVDGKEIVRNPTPR 292

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789705|ref|XP_395775.3| PREDICTED: hypothetical protein LOC412314 [Apis mellifera]

 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/264 (42%), Positives = 167/264 (63%), Gaps = 26/264 (9%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATF 102
           +++ EII+RDFFP L+KL AQN +LDA+E NDV+++RELY KYS+  P  +R  +SPATF
Sbjct: 46  KRMGEIIQRDFFPHLDKLQAQNQYLDALEQNDVKRMRELYEKYSSGRPTTER-PASPATF 104

Query: 103 ETP--------EHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDN 154
           ETP        E F S +E+     +  ++        K  +     L+ +LSTHTSEDN
Sbjct: 105 ETPMNKIESEDEQFKSSKESKDTPVDKIIKD-------KDKTELIPGLDAYLSTHTSEDN 157

Query: 155 QSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQ-AKDKDRDRRIQT 213
            SFE+++  A+K+ ++K+ WLY  E+ +        ++    +  D  A + D   ++ +
Sbjct: 158 ASFEEMMIEAEKRLKLKFAWLYKAEENS--------KVSKNDKNSDTLALENDNKNQLDS 209

Query: 214 WKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKT 273
           W + NKN  MY PDGVELT DE+I++A+ +  + H  TRL +NPF+EQQ+KE +++LAK 
Sbjct: 210 WNYKNKNYIMYVPDGVELTPDERIDLAKKKQIVVHENTRLRINPFNEQQNKETINELAKN 269

Query: 274 QAISSLSGKIGVDGKEITLNSTPR 297
           Q+ ++  GKIGVDGKEI  N TPR
Sbjct: 270 QSKAN-DGKIGVDGKEIVRNPTPR 292

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238578|ref|XP_971100.2| PREDICTED: similar to es2 protein [Tribolium castaneum]

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/255 (44%), Positives = 160/255 (62%), Gaps = 18/255 (7%)

Query: 45  IAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFET 104
           I +II+RDFFPDLEKL AQN++L+A+E NDV K+R+LY KYS + P   R   SPATFET
Sbjct: 51  IGKIIQRDFFPDLEKLKAQNEYLEAVERNDVTKMRQLYMKYSGNKPPTQRI-PSPATFET 109

Query: 105 PEHFTSLEEAGSADHEASVRSQGSCSSKKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHA 164
           P H              S  ++         S    SL++FL++HTSEDN+SF +I+  +
Sbjct: 110 PVH-------------NSFETEAPPKPPPEKSEPKLSLDQFLNSHTSEDNRSFSEILAES 156

Query: 165 KKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMY 224
           +KKH+ KY +LY  E  + +     L LPS+   + Q +  ++   + TW + NKN  MY
Sbjct: 157 EKKHQEKYSFLYKEEGNSEKERQEQLVLPSI---VKQGELPEKKLNVDTWSYKNKNYIMY 213

Query: 225 TPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIG 284
            PDGV LT++E++E+ +NR  + H  TRL +NPF+E QSKEA+ +L K QA     GKIG
Sbjct: 214 IPDGVPLTQEEEMELNKNRQEVVHCNTRLTINPFNEIQSKEAITELVKNQA-KIHDGKIG 272

Query: 285 VDGKEITLNSTPRNR 299
           VDGKE+  +++P+ R
Sbjct: 273 VDGKELMKDNSPQIR 287

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
FB|FBgn0023506	501	Es2 "Es2" [Drosophila melanoga	0.543	0.580	0.348	5.5e-38
UNIPROTKB|F1RK78	478	DGCR14 "Uncharacterized protei	0.519	0.581	0.343	2.7e-36
UNIPROTKB|E1C0J8	481	DGCR14 "Uncharacterized protei	0.517	0.575	0.333	1.9e-35
UNIPROTKB|Q96DF8	476	DGCR14 "Protein DGCR14" [Homo	0.521	0.586	0.336	5.1e-35
UNIPROTKB|A6QQU2	478	DGCR14 "Uncharacterized protei	0.523	0.585	0.335	1.3e-34
MGI|MGI:107854	479	Dgcr14 "DiGeorge syndrome crit	0.450	0.503	0.346	4.6e-34
RGD|1308218	480	Dgcr14 "DiGeorge syndrome crit	0.450	0.502	0.349	9.5e-34
UNIPROTKB|E2RJZ1	478	DGCR14 "Uncharacterized protei	0.517	0.579	0.328	1.2e-33
FB|FBgn0028552	302	gammaSnap "gamma-soluble NSF a	0.269	0.476	0.398	1.4e-22
FB|FBgn0037789	283	CG6208 [Drosophila melanogaste	0.394	0.745	0.264	1.2e-12

FB|FBgn0023506 Es2 "Es2" [Drosophila melanogaster (taxid:7227)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 107/307 (34%), Positives = 158/307 (51%)

Query:    16 SATCATPRP-ASIRQNAAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELND 74
             SA     +P A +R    P  ++     +++++II+RDFFPDLE+L AQND+LDA    D
Sbjct:    30 SALAEFKKPTAMVRHKNKPKILTEEKYIEEMSKIIQRDFFPDLERLRAQNDYLDAESRRD 89

Query:    75 -VQ--KLRELYA--KYSNSTPYVDRCES--SPATFETPEHF-----TSLEEAGSADHEAX 122
              VQ  ++RE Y+  + S +     R  +  SPATFETP        T L  + + D    
Sbjct:    90 FVQMAEIRERYSLGRISGTGRSTSRRNNAMSPATFETPVSQAKCSNTPLPNSRATDTPFS 149

Query:   123 XXXXXXXXXXXXXXXXYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEA 182
                               SL+ FL  +TSEDNQSF++IIE A+ K R KY  LY  E  +
Sbjct:   150 TDGSEKSDAEGRDTTAKLSLDAFLQKYTSEDNQSFQEIIETAEAKLRQKYAVLYNHEKLS 209

Query:   183 PENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARN 242
              E   R L LPS++ Q ++    D  R+I+TW + N NS MY PDGVE T++E++++A  
Sbjct:   210 AEQLQRALMLPSIETQFEEP---DPLRKIETWNYTNMNSIMYVPDGVEYTEEERVQLAER 266

Query:   243 RMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAA 302
             + SI H+ TRL       +   + L+D          +    V G ++  + +PR  EA 
Sbjct:   267 KQSIQHNATRLPDEAKHREMDTKKLNDEVPQNGAGGATATPKVRGFDLLRSPSPRPGEAF 326

Query:   303 STVLEKG 309
             S ++  G
Sbjct:   327 SPIMTWG 333

GO:0004757 "sepiapterin reductase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;NAS

GO:0007399 "nervous system development" evidence=ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

UNIPROTKB|F1RK78 DGCR14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 103/300 (34%), Positives = 153/300 (51%)

Query:     9 ARDLPLPSATCATPRPASIRQNAAPSYVSPR--DAEQKIA---EIIERDFFPDLEKLHAQ 63
             AR L LP+A+   PR       A P+    R  D E+ I     +I+RDFFPD+EKL AQ
Sbjct:     8 ARTLMLPAAS--RPRRKRAAGEAGPATSRQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQ 65

Query:    64 NDFLDAMELNDVQKLRELYAKYSNSTPYVDRCES----SPATFETPEHFTSLEEAGSA-- 117
              ++L+A E  D++++R++  K+ ++   + R       +PATFETPE  T     GS   
Sbjct:    66 KEYLEAEENGDLERMRQIAIKFGSALGKMSREPPPPYVTPATFETPEVHTGSGVVGSKAR 125

Query:   118 DHEAXXXXXXXXXXXXXXXXXYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYC 177
                                    SL+ FLS +TSEDN SF++++E AK+K R ++ WLY 
Sbjct:   126 GRGRGLEDGTGESVKEEEEAALPSLDVFLSRYTSEDNASFQEVMEVAKEKSRARHAWLYQ 185

Query:   178 GEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQI 237
              E+E  +     LELPS + Q  ++        ++TWK+  KNS MY P+GV    DE+ 
Sbjct:   186 AEEEFEKRQKDNLELPSAEHQAIESSQAG----VETWKYKAKNSLMYYPEGVP---DEE- 237

Query:   238 EMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPR 297
             ++ +    + H  TR   +PF +  S+  L   A   A     GK+G DGKE+    +PR
Sbjct:   238 QLFKKPRQVVHKNTRFLKDPFSQALSRSQLQQAAALNA-QHKQGKVGPDGKELIPQESPR 296

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

UNIPROTKB|E1C0J8 DGCR14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 98/294 (33%), Positives = 152/294 (51%)

Query:    12 LPLPSATCATPRPASIRQNAA--PSYVSPRDAE-QKIAEIIERDFFPDLEKLHAQNDFLD 68
             +P+ +   A  R      +AA  P  +   DA  + +  II+RDFFPD+EKL AQ ++L+
Sbjct:    13 VPVAAEAGAVVRSREAVGSAAKRPKKILDEDAYIESLENIIQRDFFPDVEKLRAQKEYLE 72

Query:    69 AMELNDVQKLRELYAKYSNSTPYVDRCES----SPATFETPEHFTSLEEAGSADHEAXXX 124
             A E  D++K+R++  K+ +S     R       +PATFETPE   S    G+ +  A   
Sbjct:    73 AEENGDLEKMRQIAIKFGSSLGKSSRDTPVPYVTPATFETPEVHPSGLPLGT-NSRAGTR 131

Query:   125 XXXXXXXXXXXXXXYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPE 184
                             +L+ FL+ HTSEDN SFE I+E AK+K ++K+ WLY  E+E  +
Sbjct:   132 AAEEGETEKDDKDALPNLDSFLAKHTSEDNASFEQIMEVAKEKEKVKHAWLYSAEEEYAQ 191

Query:   185 NTSRFLELPSMQEQ-IDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNR 243
               ++ L LPS ++Q ++  K       ++TW++  +N+ MY P  V+   DE+    + R
Sbjct:   192 RRNKNLALPSAEQQALENVK-----AGLETWEYTARNTLMYYPT-VQGVPDEEDTFKKPR 245

Query:   244 MSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPR 297
               + H  TR   +PF +  SK  L   A   A     GK+G DGKE+    +P+
Sbjct:   246 -EVVHRNTRFVKDPFSQAVSKSQLQQAAALNA-QYKQGKVGPDGKELIPQESPK 297

GO:0007399 "nervous system development" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|Q96DF8 DGCR14 "Protein DGCR14" [Homo sapiens (taxid:9606)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 100/297 (33%), Positives = 151/297 (50%)

Query:     9 ARDLPLPSATCATPRPASIRQ-NAAPSYVSPRDAEQKIA---EIIERDFFPDLEKLHAQN 64
             A  L LP+A+   PR     +  AA S     D E+ I     +I+RDFFPD+EKL AQ 
Sbjct:     8 ASSLLLPAAS-RPPRKREAGEAGAATSKQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQK 66

Query:    65 DFLDAMELNDVQKLRELYAKYSNSTPYVDRCES----SPATFETPEHFTSLEEAGSADHE 120
             ++L+A E  D++++R++  K+ ++   + R       +PATFETPE        G+    
Sbjct:    67 EYLEAEENGDLERMRQIAIKFGSALGKMSREPPPPYVTPATFETPEVHAGTGVVGNKPRP 126

Query:   121 AXXXXXXXXXXXXXXXXXYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGED 180
                                 SL+ FLS +TSEDN SF++I+E AK++ R ++ WLY  E+
Sbjct:   127 RGRGLEDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKERSRARHAWLYQAEE 186

Query:   181 EAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMA 240
             E  +     LELPS + Q  ++        ++TWK+  KNS MY P+GV    DE+ ++ 
Sbjct:   187 EFEKRQKDNLELPSAEHQAIESSQAS----VETWKYKAKNSLMYYPEGVP---DEE-QLF 238

Query:   241 RNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPR 297
             +    + H  TR   +PF +  S+  L   A   A     GK+G DGKE+    +PR
Sbjct:   239 KKPRQVVHKNTRFLRDPFSQALSRCQLQQAAALNA-QHKQGKVGPDGKELIPQESPR 294

GO:0005634 "nucleus" evidence=ISS

GO:0007399 "nervous system development" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

UNIPROTKB|A6QQU2 DGCR14 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 100/298 (33%), Positives = 149/298 (50%)

Query:     9 ARDLPLPSATCATPRPASIRQNAAPSYVSPRDAEQKIA---EIIERDFFPDLEKLHAQND 65
             AR   LP+A+    + A+    AA       D E+ I     +I+RDFFPD+EKL AQ +
Sbjct:     8 ARSQLLPAASGPRRKRAAGDAGAATGRQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKE 67

Query:    66 FLDAMELNDVQKLRELYAKYSNSTPYVDRCES----SPATFETPE-HFTSLEEAGSADHE 120
             +L+A E  D++++R++  K+ ++     R       +PATFETPE H       G A   
Sbjct:    68 YLEAEENGDLERMRQIAIKFGSALGKTSREPPPPYVTPATFETPELHMGPSVVGGKARAR 127

Query:   121 AXXXXXXXXXXXXXXXXX-YQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGE 179
                                  SL+ FLS HTSEDN SF +I+E AK++ R ++ WLY  E
Sbjct:   128 GRGLEDGDGEAAEEAAAEPLPSLDVFLSRHTSEDNASFREIMEVAKERGRARHAWLYQAE 187

Query:   180 DEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEM 239
             +E  +     L LPS + Q  ++        ++TWK+  KNS MY P+GV    DE+ ++
Sbjct:   188 EEFEKRQKDSLALPSAEHQAVESGQAG----VETWKYKAKNSLMYYPEGVP---DEE-QL 239

Query:   240 ARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPR 297
              +    + H  TR   +PF +  S+  L   A   A     GK+G DGKE+  + +PR
Sbjct:   240 LKKPRQVVHKNTRFLRDPFSQALSRSQLQQAAALNA-QHKQGKVGPDGKELIPHESPR 296

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

MGI|MGI:107854 Dgcr14 "DiGeorge syndrome critical region gene 14" [Mus musculus (taxid:10090)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 88/254 (34%), Positives = 133/254 (52%)

Query:    48 IIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCES----SPATFE 103
             +I+RDFFPD+EKL AQ ++L+A E  D++++R++  K+ ++   + R       +PATFE
Sbjct:    53 VIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKISREPPPPYVTPATFE 112

Query:   104 TPEHFTSLEEAGSADHEAXXXXXXXXXXXXXXXXXYQSLNEFLSTHTSEDNQSFEDIIEH 163
             TPE        G+                        SL+ FLS +TSEDN SF++I+E 
Sbjct:   113 TPEVHPGSAVLGNKPRPQGRDLDDGEAGEEEEKEPLPSLDVFLSQYTSEDNASFQEIMEV 172

Query:   164 AKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAM 223
             AK+K   ++ WLY  E+E  +     LELPS + Q  ++        ++TWK+  KNS M
Sbjct:   173 AKEKSHARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQAG----VETWKYKAKNSLM 228

Query:   224 YTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKI 283
             Y P+GV    DE+ ++ +    I H  TR   +PF +  S+  L   A   A     GK+
Sbjct:   229 YYPEGVP---DEE-QLFKKPRQIVHKNTRFLRDPFSQALSRSQLQQAAALNA-QHKQGKV 283

Query:   284 GVDGKEITLNSTPR 297
             G DGKE+    +PR
Sbjct:   284 GPDGKELIPQESPR 297

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|1308218 Dgcr14 "DiGeorge syndrome critical region gene 14" [Rattus norvegicus (taxid:10116)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 89/255 (34%), Positives = 134/255 (52%)

Query:    48 IIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCES----SPATFE 103
             +I+RDFFPD+EKL AQ ++L+A E  D++++R++  K+ ++   + R       +PATFE
Sbjct:    53 VIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKISREPPPPYVTPATFE 112

Query:   104 TPEHFTSLEEAGSADH-EAXXXXXXXXXXXXXXXXXYQSLNEFLSTHTSEDNQSFEDIIE 162
             TPE        GS    +                    SL+ FLS +TSEDN SF++I+E
Sbjct:   113 TPEVHPGSGVLGSKPRPQGRDPEDAGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIME 172

Query:   163 HAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSA 222
              AK+K   ++ WLY  E+E  +     LELPS + Q  ++        ++TWK+  KNS 
Sbjct:   173 VAKEKSHARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQAG----VETWKYKAKNSL 228

Query:   223 MYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGK 282
             MY P+GV    DE+ ++ +    I H  TR   +PF +  S+  L   A   A     GK
Sbjct:   229 MYYPEGVP---DEE-QLFKKPRQIVHKNTRFLRDPFSQALSRSQLQQAAALNA-QHKQGK 283

Query:   283 IGVDGKEITLNSTPR 297
             +G DGKE+    +PR
Sbjct:   284 VGPDGKELIPQESPR 298

GO:0005634 "nucleus" evidence=ISO

GO:0007399 "nervous system development" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|E2RJZ1 DGCR14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 97/295 (32%), Positives = 149/295 (50%)

Query:    12 LPLPSATCATPRPASIRQNAAPSYVSPRDAEQKIA---EIIERDFFPDLEKLHAQNDFLD 68
             L LP ++    + A+    AA S     D E+ I     +I+RDFFPD+EKL AQ ++L+
Sbjct:    11 LLLPPSSGPRRKRAAGEARAAASKQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKEYLE 70

Query:    69 AMELNDVQKLRELYAKYSNSTPYVDRCES----SPATFETPEHFTSLEEAGSADHEAXXX 124
             A E  D++++R++  K+ ++   + R       +PATFETP+  T     G+        
Sbjct:    71 AEENGDLERMRQIAIKFGSALGKMSREPPPPYVTPATFETPDVHTGTGVVGNKPRGRGRG 130

Query:   125 XXXXXXXXXXXXXX--YQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEA 182
                               SL+ FLS +TSEDN SF++I+E AK+K R ++ WLY  E+E 
Sbjct:   131 LEDGDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKEKSRARHTWLYQAEEEF 190

Query:   183 PENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARN 242
              +     L LPS + Q  ++        ++TWK+  KNS MY P+GV    DE+ ++ + 
Sbjct:   191 EKRQKDNLALPSAEHQAIESSQAG----VETWKYKAKNSLMYYPEGVP---DEE-QLFKK 242

Query:   243 RMSINHSGTRLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPR 297
                + H  TR   +PF +  S+  L   A   A     GK+G DGKE+    +PR
Sbjct:   243 PRQVVHKNTRFLRDPFSQALSRSQLQQAAALNA-QHKQGKVGPDGKELIPQDSPR 296

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

FB|FBgn0028552 gammaSnap "gamma-soluble NSF attachment protein" [Drosophila melanogaster (taxid:7227)]

 Score = 267 (99.0 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 59/148 (39%), Positives = 86/148 (58%)

Query:   322 LTLYSRAADVAHGEDNY--KQAAEYISRNR-EAASTVLEKGAKSLEELKSDAALTLYSRA 378
             + L S+ AD  H  + Y  K A+ Y      EAA++ L+K AK  E    D AL  Y  A
Sbjct:    84 IILLSKDADKLHEVEEYANKSASLYQQHGSPEAAASALDKAAKLTESKHPDMALRFYQHA 143

Query:   379 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRXXXXX 438
              +V   ED+ +QAAEY S+ +R+ V+++ +D+A + +++EI  +Q++E    IGR     
Sbjct:   144 LEVIMIEDSVRQAAEYASKVSRILVKLRRYDEATNALKKEISLNQQTESYGQIGRLVVAL 203

Query:   439 XXXXXXRGDTVAAEKAFKEWGNCCEAPE 466
                   RGD+V AEK F+EWGNCCE PE
Sbjct:   204 VMVQLARGDSVEAEKTFREWGNCCE-PE 230

GO:0005737 "cytoplasm" evidence=NAS

GO:0005483 "soluble NSF attachment protein activity" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0031201 "SNARE complex" evidence=IDA

FB|FBgn0037789 CG6208 [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 59/223 (26%), Positives = 104/223 (46%)

Query:   255 VNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAASTVLEKGAKSLE 314
             ++  D ++ +EA   + +T + ++   K G+  K  T     ++ +     L K     E
Sbjct:     1 MSTLDAKKIEEAEALIGQTDSAANEYAKAGMYFKAATAYRIAKSFDKRKDCLLKAIDCYE 60

Query:   315 ELKP--DAALTLYSRAADVAHGEDNYKQAAEYISR---------NREAASTVLEKGAKSL 363
               K    AA + Y +   +A   D   +  +Y +R         + EAA+  L+K AK  
Sbjct:    61 NNKSWFHAAKS-YEQIILLAKETDKLSEVEDYANRACCLYQQHGSPEAAAAALDKAAKMT 119

Query:   364 EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423
             E    D AL  Y RA  V    D+  QA+E+ S+ +R+ VR+K++++A   +++EI  + 
Sbjct:   120 ESKHPDLALGFYKRALAVVLIGDSTHQASEFASKVSRILVRLKKYEEATKALKKEISLNL 179

Query:   424 ESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKEWGNCCEAPE 466
             +++    +GR             D V A+K FK+WGN C+  E
Sbjct:   180 QTKSYGQVGRLVVALILVQLTLEDYVDAKKTFKKWGNRCDPQE 222

GO:0005483 "soluble NSF attachment protein activity" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	535
pfam09751	390	pfam09751, Es2, Nuclear protein Es2	3e-47

>gnl|CDD|220380 pfam09751, Es2, Nuclear protein Es2

 Score =  168 bits (428), Expect = 3e-47
 Identities = 92/277 (33%), Positives = 134/277 (48%), Gaps = 30/277 (10%)

Query: 47  EIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFETPE 106
           +IIERDFFPDL KL AQN++LDA+E  D +++RE+  K ++        E +P  F TP 
Sbjct: 17  KIIERDFFPDLLKLRAQNEYLDAVESGDKERIREIQRKLTSLMG--KSTEVTPGRFRTPS 74

Query: 107 ---HFTSLEEAGSADHEASVRSQG---------SCSSKKSTSGKYQ-----SLNEFLSTH 149
                 +    GS          G         S +  +      +     SL+EF + +
Sbjct: 75  SSSGLRNTPNPGSPSTSGDHTPMGGDTPRSVVSSETEGEEEGKGKKKDDNLSLDEFQAKY 134

Query: 150 TSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAK-----D 204
           TSEDN SFE+++E   +K R K+ WLY  E E     ++ L LPS++EQ          +
Sbjct: 135 TSEDNASFEELLEKQNEKRREKHAWLYEAEKEHNRKIAQRLALPSIEEQTKLGIKSLAIE 194

Query: 205 KDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLH--VNPFDEQQ 262
            +    + TWK+  KNS M+ PDGVE +  E I+ A     I H  TR     NPF +  
Sbjct: 195 DNPAANLDTWKYKAKNSLMFMPDGVEDSPLETIQAAARAPEIVHKNTRFSQEYNPFPKSP 254

Query: 263 SKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNR 299
           SK A+ +    +A +    ++G DGK    + TPR  
Sbjct: 255 SKSAIQEAIAGKARAKDG-EVGEDGK---GSETPRVN 287

This entry is of a family of proteins of approximately 500 residues with alternating regions of low complexity and conservation where the domain similarities are strong. Apart from a predicted coiled-coil domain, no other known functional domains have been characterized. The protein appears to be expressed in the nucleus and particularly highly in the pons sub-region of the brain. The protein is clearly necessary for normal development of the nervous system. Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
PF09751	414	Es2: Nuclear protein Es2; InterPro: IPR019148 This	100.0
KOG2627|consensus	488		100.0
KOG1586|consensus	288		100.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.96
KOG1585|consensus	308		99.93
KOG1586|consensus	288		99.91
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.87
KOG1585|consensus	308		99.86
KOG4626|consensus	966		97.73
KOG1840|consensus	508		97.72
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.52
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.5
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.31
KOG1840|consensus	508		97.29
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.18
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.98
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.94
KOG4626|consensus	966		96.94
KOG2003|consensus	840		96.79
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.69
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.63
PRK11189	296	lipoprotein NlpI; Provisional	96.62
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.54
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.45
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.44
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.44
KOG1155|consensus	559		96.42
KOG3616|consensus	1636		96.39
PRK10803	263	tol-pal system protein YbgF; Provisional	96.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.34
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.23
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.15
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.04
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.01
KOG1155|consensus	559		95.95
PRK12370	553	invasion protein regulator; Provisional	95.93
KOG1129|consensus	478		95.88
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.78
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.34
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.29
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	95.24
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.24
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.22
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.13
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.09
KOG3617|consensus	1416		95.02
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.7
KOG0553|consensus	304		94.63
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.61
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	94.45
PRK15359	144	type III secretion system chaperone protein SscB;	94.42
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.41
PRK10803	263	tol-pal system protein YbgF; Provisional	94.4
KOG1126|consensus	638		94.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	94.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	94.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	93.98
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	93.96
PRK12370	553	invasion protein regulator; Provisional	93.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	93.78
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.75
PRK04841	903	transcriptional regulator MalT; Provisional	93.72
KOG3617|consensus	1416		93.7
PF12688	120	TPR_5: Tetratrico peptide repeat	93.52
PRK15359	144	type III secretion system chaperone protein SscB;	93.52
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.52
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	93.44
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	93.4
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	93.38
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	93.33
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	92.9
PRK04841	903	transcriptional regulator MalT; Provisional	92.87
KOG3616|consensus	1636		92.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	92.5
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	92.47
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	92.42
PF12688	120	TPR_5: Tetratrico peptide repeat	92.4
KOG2003|consensus	840		92.35
KOG0553|consensus	304		92.32
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	92.26
TIGR02552	135	LcrH_SycD type III secretion low calcium response	91.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	91.6
KOG2076|consensus	895		91.58
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.84
KOG2047|consensus	835		90.76
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.67
PF03704	146	BTAD: Bacterial transcriptional activator domain;	90.64
KOG2002|consensus	1018		90.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.12
KOG0548|consensus	539		89.94
KOG0547|consensus	606		89.75
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	89.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	89.3
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.27
KOG1125|consensus	579		88.64
KOG1126|consensus	638		88.4
KOG2076|consensus	895		88.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	88.14
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	88.13
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	87.87
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	87.54
PRK11189	296	lipoprotein NlpI; Provisional	87.54
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	87.33
PRK10370	198	formate-dependent nitrite reductase complex subuni	87.23
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	86.92
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.61
KOG0543|consensus	397		86.46
KOG0687|consensus	393		86.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	86.32
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	86.19
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	85.81
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	85.56
KOG1173|consensus	611		85.55
KOG0547|consensus	606		85.06
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	84.83
KOG0543|consensus	397		84.6
PRK14574	822	hmsH outer membrane protein; Provisional	84.42
PRK15331	165	chaperone protein SicA; Provisional	84.19
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	83.32
PLN03218	1060	maturation of RBCL 1; Provisional	83.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	82.92
PRK14720	906	transcript cleavage factor/unknown domain fusion p	82.75
KOG0548|consensus	539		82.54
PF02071	12	NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro:	81.97
KOG4234|consensus	271		81.88
PF13371	73	TPR_9: Tetratricopeptide repeat	81.67
COG5187	412	RPN7 26S proteasome regulatory complex component,	81.64
PRK14720	906	transcript cleavage factor/unknown domain fusion p	81.41
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	81.31
PF13512	142	TPR_18: Tetratricopeptide repeat	81.02
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	80.82
KOG1920|consensus	1265		80.73
KOG2002|consensus	1018		80.69

>PF09751 Es2: Nuclear protein Es2; InterPro: IPR019148 This entry represents a family of proteins of approximately 500 residues with alternating regions of low complexity and conservation where the domain similarities are strong

Probab=100.00  E-value=1.7e-67  Score=561.19  Aligned_cols=282  Identities=34%  Similarity=0.497  Sum_probs=219.0

Q ss_pred             CCCCcCChHHHHHHHHhhhhhccCCCcHHhhhhHHHHHHHhhcCHHHHHHHHHHhcC-CCCccCCCCCCCCCCCCCCCcc
Q psy11025         31 AAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSN-STPYVDRCESSPATFETPEHFT  109 (535)
Q Consensus        31 ~~~~VLdEd~Y~~~L~~II~RDfFPdL~kl~~q~eyL~A~~s~D~~~i~~~~~~~~~-~~~~~~~~~~~p~~~~TP~~~~  109 (535)
                      |+++|||||+||++|++||+|||||||++|++|+||||||++||++||++++++|.. +++.......||++++||...+
T Consensus         1 r~~~vL~Ed~Y~~~l~~II~RDfFPdL~~l~~q~eyLeA~es~D~~~ir~~~~k~~~~~~~~~~~~~~tp~~~~tp~~~~   80 (414)
T PF09751_consen    1 RKQKVLDEDEYTEALSKIIQRDFFPDLPKLRAQNEYLEALESNDPERIREAQRKLSSRMRKSSRRSSPTPGRFRTPSSSS   80 (414)
T ss_pred             CCCccccHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCCCcCCCCCCccCCCcccc
Confidence            578999999999999999999999999999999999999999999999999999983 3322211245777777775321


Q ss_pred             cc---------ccc-------CCCCCCCcccccCCCC------CCCCCCCCCCChHHHhhhcCCccchhHHHHHHHHHHh
Q psy11025        110 SL---------EEA-------GSADHEASVRSQGSCS------SKKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKK  167 (535)
Q Consensus       110 ~~---------~~~-------~~~~~p~~~~s~~~~~------~~~~~~~~~~sLd~F~~kyTSEDN~SF~~il~~~n~k  167 (535)
                      ..         +..       ...++|+++.++....      .....++++||||+||+|||||||+||++|||++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~tp~~~~~dtp~s~~~~~~~~~~~~~~~~~~~~~~~lSLD~F~akYTSEDNaSF~eIle~~n~k  160 (414)
T PF09751_consen   81 GTPSTPPPSTPSTPGDNTPSGWGGDTPMSSASSATSDDEEGKGKKKKNYDTNLSLDAFQAKYTSEDNASFEEILEKQNQK  160 (414)
T ss_pred             cCCCCCCCCCCCCCCCCCCcccCCCCCCCccccccccccccccccccccccCCCHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            10         000       0123444433221111      1223358999999999999999999999999999999


Q ss_pred             hhhhcccccccCCCCccchhhhhcCCchHhhhhh----hcccCCcCccccCcCccCCccccCCCCCCCCH-HHHHHHhc-
Q psy11025        168 HRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQ----AKDKDRDRRIQTWKFVNKNSAMYTPDGVELTK-DEQIEMAR-  241 (535)
Q Consensus       168 ~~~k~awl~~~e~~~~~~~~~~l~~~~~~~~~~~----~~~~~r~~~~~~W~~~~~N~LMf~P~~~~~~~-~~~~~~~~-  241 (535)
                      +|+||+|||+.+..++.++...+++++++.+...    ...++||+.+|+|+|+++|+|||+|++++.+. ++..+... 
T Consensus       161 rreKyaWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rp~~~d~W~~k~rN~LMf~P~~~~~~~~e~~~~~~~~  240 (414)
T PF09751_consen  161 RREKYAWLYDNEKESNRRLAQQLALPSIEEQDKAGIRSLAIEDRPAAPDTWKYKARNSLMFPPDGVEDTPHETIEQKARA  240 (414)
T ss_pred             HHHHhHHHHhcccccHHHHHHHhhcchhhhhhccccchhhhhcCCCCCccccccccccccccCCCCcccccchhhhhhhc
Confidence            9999999999877788877777777765432110    11258999999999999999999999999984 44444433 


Q ss_pred             --CCCceeccCCCCC------CCCCCccccHHHHHHHHhhhhhhhhcCCC---CCCCCcccCCCCccccccccccccccc
Q psy11025        242 --NRMSINHSGTRLH------VNPFDEQQSKEALHDLAKTQAISSLSGKI---GVDGKEITLNSTPRNREAASTVLEKGA  310 (535)
Q Consensus       242 --~~k~I~~~NTR~~------~~p~~~~~~~~~~~~a~~~~~~~~~~g~~---~~~g~e~~~~~~p~v~gy~fv~~~~~~  310 (535)
                        +||+|+|.||||+      .+++..++++++|.+|+++++. ...|++   |.+|+++    ||+||||+||.+++|.
T Consensus       241 ~~~pk~I~~~NTR~p~~~~~~~~~~~~s~s~s~i~~a~~~~~~-~~~~~~~~~g~egk~~----tP~vnGy~fV~tpsp~  315 (414)
T PF09751_consen  241 PSPPKEIVHANTRFPESTPDESNSFPPSPSRSAIDDAIAGRPR-PKDSEVAATGSEGKEL----TPRVNGYSFVDTPSPA  315 (414)
T ss_pred             ccCcccccccccCCccccccccCCCCCCcCHHHHHHHHhcCCc-cCcccccccccccccc----CCCCCCccccCCCCCC
Confidence              4899999999995      4577878999999999999888 777777   6666655    9999999999999885


Q ss_pred             -----CccccCC
Q psy11025        311 -----KSLEELK  317 (535)
Q Consensus       311 -----~sl~k~K  317 (535)
                           .+|+-|=
T Consensus       316 Pg~~~sPlmTWG  327 (414)
T PF09751_consen  316 PGVDESPLMTWG  327 (414)
T ss_pred             CCCCCCCccccc
Confidence                 5777783

Apart from a predicted coiled-coil domain, no other known functional domains have been characterised. May be involved in pre-mRNA splicing and has been associated with the spliceosome C complex. The protein appears to be expressed in the nucleus, particularly in the pons sub-region of the brain. It is clearly necessary for normal development of the nervous system [].

>KOG2627|consensus

Probab=100.00  E-value=6.1e-64  Score=511.27  Aligned_cols=277  Identities=29%  Similarity=0.411  Sum_probs=228.5

Q ss_pred             ccccCCCCCcCChHHHHHHHHhhhhhccCCCcHHhhhhHHHHHHHhhcCHHHHHHHHHHhcC----CC--C-ccCCCCCC
Q psy11025         26 SIRQNAAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSN----ST--P-YVDRCESS   98 (535)
Q Consensus        26 ~~r~k~~~~VLdEd~Y~~~L~~II~RDfFPdL~kl~~q~eyL~A~~s~D~~~i~~~~~~~~~----~~--~-~~~~~~~~   98 (535)
                      +.+.|+++.|||||+||++|++||||||||||.|||+|+|||||++.||+.+|++|+.|+..    ++  + ..+.+..+
T Consensus        32 ~~~~k~k~rvL~Ee~YIEgl~kIIqrDyFPDl~KLrAq~dyLeAe~~~D~~qireiq~k~~~~~~~~t~~~~~~r~~~~s  111 (488)
T KOG2627|consen   32 KVQTKKKPRVLDEEKYIEGLSKIIQRDYFPDLEKLRAQKDYLEAEENGDFDQIREIQDKFLSYLIKKTSEDDPLRKTLTS  111 (488)
T ss_pred             ccccccCcccCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccccCCCCCcccCCCC
Confidence            44667789999999999999999999999999999999999999999999999999999862    21  1 11224556


Q ss_pred             CCCCCCCCCcccccccCCCCCCCccc-ccCCCC---C---CCCCCCCCCChHHHhhhcCCccchhHHHHHHHHHHhhhhh
Q psy11025         99 PATFETPEHFTSLEEAGSADHEASVR-SQGSCS---S---KKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIK  171 (535)
Q Consensus        99 p~~~~TP~~~~~~~~~~~~~~p~~~~-s~~~~~---~---~~~~~~~~~sLd~F~~kyTSEDN~SF~~il~~~n~k~~~k  171 (535)
                      ++||++|......   +.+|+|.+.. +++-.+   .   ...+.+.++|||.|++|||||||+||+|||+.+++|+++|
T Consensus       112 ~sT~E~~~~~~~~---~n~p~Prs~~~s~pfa~ee~dkedl~~d~~~~lSLd~fl~rYTSEDNaSFqEimE~~~~k~r~k  188 (488)
T KOG2627|consen  112 LSTFEIPKAQLDG---ENKPTPRSRSVSRPFAGEEVDKEDLDEDIDLNLSLDNFLRRYTSEDNASFQEIMEVASRKRREK  188 (488)
T ss_pred             ccccccccccccc---cCCCCCCCccccccccccccccccccccchhhhhHHHHHHhhcccchhhHHHHHHHHHHHHHhh
Confidence            7788888765222   2345554421 111111   1   1114678999999999999999999999999999999999


Q ss_pred             cccccccCCCCccchhhhhcCCchHhhhhhhcccCCcCccccCcCccCCccccCCCCCCCCHHHHHHHhcCCCceeccCC
Q psy11025        172 YPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGT  251 (535)
Q Consensus       172 ~awl~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~W~~~~~N~LMf~P~~~~~~~~~~~~~~~~~k~I~~~NT  251 (535)
                      |+|||.+|+++++|....+.+++++.|+++   ++.|..+++|+|+++|+|||+|+||+++. +..+++..+++|+|+||
T Consensus       189 ~~~ly~~Eke~~k~~~e~~~~~ai~~~~~~---~d~~~sietW~Y~akNslMY~Peg~~~t~-~e~q~a~r~~qi~~~nT  264 (488)
T KOG2627|consen  189 HAWLYGAEKEQPKQTIEALNLDAIKHQAWE---SDQPKSIETWNYTAKNSLMYTPEGVHSTP-TEAQLAVRLQQIKKNNT  264 (488)
T ss_pred             hhhhhhhhhcchhhhhhhhhhhhhhhhhcc---CCCccccccccccccceeeecCCCCccch-HHHHHHHHHHhhhhccc
Confidence            999999999999998899999999999987   34499999999999999999999999988 67789999999999999


Q ss_pred             CCCCCCCCccccHHHHHHHHhhhhhhhhcCCCCCCCCcccCCCCccccccccccccccc-----CccccC
Q psy11025        252 RLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAASTVLEKGA-----KSLEEL  316 (535)
Q Consensus       252 R~~~~p~~~~~~~~~~~~a~~~~~~~~~~g~~~~~g~e~~~~~~p~v~gy~fv~~~~~~-----~sl~k~  316 (535)
                      ||+..+++..+..-.|+.      . ..++.+|.|++++..++.|++|||+||-+|+|+     -.++-|
T Consensus       265 Rfpd~~k~~~~d~~~i~a------~-~~~~~sg~d~~~~v~~e~~~~ngf~fvrtPSP~Pg~~~SP~mTW  327 (488)
T KOG2627|consen  265 RFPDKTKDSRPDSTEINA------D-VPQHLSGSDRDKYVESELPAANGFSFVRTPSPAPGVPESPNMTW  327 (488)
T ss_pred             ccCCcccccccchhhhhc------c-ccccccCCcccccccccccccCCcccccCCCCCCCCCCCccccc
Confidence            999999987766333433      3 567789999999999999999999999999984     344666

>KOG1586|consensus

Probab=100.00  E-value=3e-36  Score=290.13  Aligned_cols=211  Identities=18%  Similarity=0.171  Sum_probs=182.5

Q ss_pred             cCCCCcccc---cccccccccccCccccCCHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHH
Q psy11025        291 TLNSTPRNR---EAASTVLEKGAKSLEELKPDAALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEK  358 (535)
Q Consensus       291 ~~~~~p~v~---gy~fv~~~~~~~sl~k~K~D~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~  358 (535)
                      ...+++|++   ||++||+.        .|+|+|++||++|||       |..||++|.+||+||.+  ++|+||++|++
T Consensus         8 ~k~AEkK~~~s~gF~lfgg~--------~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Yve   79 (288)
T KOG1586|consen    8 MKKAEKKLNGSGGFLLFGGS--------NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVE   79 (288)
T ss_pred             HHHHHHhcccCCcccccCCC--------cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence            344556666   55556643        599999999999998       77899999999999976  78999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhHH--HHHHHHH
Q psy11025        359 GAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV-KEFDKAADLIRQEIGYHQESEHL--LAIGRLA  435 (535)
Q Consensus       359 AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~-~~y~~Aie~ye~~~~~~~a~e~~--~~a~rl~  435 (535)
                      |+|||++.+|++||+|+++|+++|+..|||++|+++...||+|||.. .++++||..||+++++|...+..  .+.|-++
T Consensus        80 A~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK  159 (288)
T KOG1586|consen   80 AANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK  159 (288)
T ss_pred             HHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999985 99999999999999999988764  4456667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHH
Q psy11025        436 VALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE  515 (535)
Q Consensus       436 la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~  515 (535)
                      ||+...+|.+|..  |+.+|++++....+                     ..+-+|++++++ |++||||||..|.|.++
T Consensus       160 vA~yaa~leqY~~--Ai~iyeqva~~s~~---------------------n~LLKys~Kdyf-lkAgLChl~~~D~v~a~  215 (288)
T KOG1586|consen  160 VAQYAAQLEQYSK--AIDIYEQVARSSLD---------------------NNLLKYSAKDYF-LKAGLCHLCKADEVNAQ  215 (288)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHhcc---------------------chHHHhHHHHHH-HHHHHHhHhcccHHHHH
Confidence            7777888876666  99999998885433                     122348999996 99999999999999999


Q ss_pred             HHHHH----hcCCCCchhhhcc
Q psy11025        516 KAFKE----WGNCCEAPEINSH  533 (535)
Q Consensus       516 ~a~~~----~~~F~~s~E~~~~  533 (535)
                      ++|++    .|+|.+||||+-+
T Consensus       216 ~ALeky~~~dP~F~dsREckfl  237 (288)
T KOG1586|consen  216 RALEKYQELDPAFTDSRECKFL  237 (288)
T ss_pred             HHHHHHHhcCCcccccHHHHHH
Confidence            99998    3999999999865

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.96  E-value=6.7e-29  Score=252.89  Aligned_cols=197  Identities=20%  Similarity=0.283  Sum_probs=159.5

Q ss_pred             CCHH--HHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Q psy11025        316 LKPD--AALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHG  384 (535)
Q Consensus       316 ~K~D--~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~  384 (535)
                      |+||  +|+++|++||+       |.+|+++|.+|++||.+  ++..||++|++|+++|++.++++|+++|++|+++|..
T Consensus        27 ~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~  106 (282)
T PF14938_consen   27 KKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYRE  106 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Confidence            5555  99999999998       78999999999999976  5677999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q psy11025        385 EDNYKQAAEYISRAARMCVRV-KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE  463 (535)
Q Consensus       385 egr~~~Aa~~l~kaAel~e~~-~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~  463 (535)
                      .|++++|++++.++|++|+.. +++++|+++|+++.++|...+....+..+.+.+..+....+++..|+.+|++++..|.
T Consensus       107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999998 9999999999999999998877665555544333334444566669999999877544


Q ss_pred             CCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHh----cCCCCchhhhccC
Q psy11025        464 APERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEINSHM  534 (535)
Q Consensus       464 ~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~~----~~F~~s~E~~~~~  534 (535)
                      +.            +  +       ..|.+ ...+|++||||||+||.|+|+++++++    |+|.+|||+..+.
T Consensus       187 ~~------------~--l-------~~~~~-~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~  239 (282)
T PF14938_consen  187 EN------------N--L-------LKYSA-KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE  239 (282)
T ss_dssp             CH------------C--T-------TGHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred             cc------------c--c-------cchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence            30            0  1       12543 444699999999999999999999983    9999999998753

>KOG1585|consensus

Probab=99.93  E-value=2.5e-25  Score=215.99  Aligned_cols=194  Identities=22%  Similarity=0.234  Sum_probs=159.9

Q ss_pred             cCccccCCHH--HHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHH
Q psy11025        310 AKSLEELKPD--AALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELK-SDAALTLYSR  377 (535)
Q Consensus       310 ~~sl~k~K~D--~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~-~~eAie~y~k  377 (535)
                      +..+++||||  .|+.+|+|||+       +++|.+|+.+|++||++  +..+||++|+.|+-+.++.+ +.|++.+|++
T Consensus        17 a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eK   96 (308)
T KOG1585|consen   17 ALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEK   96 (308)
T ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3457789999  89999999998       55777788888888875  56679999999999999987 8999999999


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy11025        378 AADVAHGEDNYKQAAEYISRAARMCVR------VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAA  451 (535)
Q Consensus       378 Aaely~~egr~~~Aa~~l~kaAel~e~------~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA  451 (535)
                      |+++|.+.|+++.|+..+.|+|++++.      ++.|++|+.+++...+..++.+.+.+++++     +++|..++.  |
T Consensus        97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~-----lVrl~kf~E--a  169 (308)
T KOG1585|consen   97 ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV-----LVRLEKFTE--A  169 (308)
T ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH-----hhhhHHhhH--H
Confidence            999999999999999999999999987      345555555555555555666667777666     778888888  5


Q ss_pred             HHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---hcCCCCch
Q psy11025        452 EKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAP  528 (535)
Q Consensus       452 ~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~---~~~F~~s~  528 (535)
                      ...+.+                       +.........|..++++++.+||+||...|+|.|++++.+   ||+|++|+
T Consensus       170 a~a~lK-----------------------e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se  226 (308)
T KOG1585|consen  170 ATAFLK-----------------------EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE  226 (308)
T ss_pred             HHHHHH-----------------------hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence            466654                       2233345566899999999999999999999999999998   89999999


Q ss_pred             hhhcc
Q psy11025        529 EINSH  533 (535)
Q Consensus       529 E~~~~  533 (535)
                      +++++
T Consensus       227 d~r~l  231 (308)
T KOG1585|consen  227 DSRSL  231 (308)
T ss_pred             HHHHH
Confidence            99875

>KOG1586|consensus

Probab=99.91  E-value=2.2e-23  Score=201.41  Aligned_cols=181  Identities=22%  Similarity=0.306  Sum_probs=147.1

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHh-CHHHHHHHHH--------------------HHHHHHHh--CCHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISR-NREAASTVLE--------------------KGAKSLEE--LKSDAALTLYS  376 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~-~~~~AA~~l~--------------------~AAk~~ek--~~~~eAie~y~  376 (535)
                      .||+++.|+++-++|+.+|..|++||++ .+.+|++||+                    +.|++||.  .+.+.||.+|+
T Consensus        59 kaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE  138 (288)
T KOG1586|consen   59 KAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYE  138 (288)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHH
Confidence            3444444444456777777777777765 4555666666                    44455554  35889999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHhcCCH
Q psy11025        377 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ--------ESEHLLAIGRLAVALVLVQLARGDT  448 (535)
Q Consensus       377 kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~--------a~e~~~~a~rl~la~il~~L~~~D~  448 (535)
                      +|+++|.++...+.|++|+.|+|.+....++|.+||++||++++...        ..+++++++       |||||..|.
T Consensus       139 ~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg-------LChl~~~D~  211 (288)
T KOG1586|consen  139 QAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG-------LCHLCKADE  211 (288)
T ss_pred             HHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH-------HHhHhcccH
Confidence            99999999999999999999999999999999999999999987754        345566665       999999999


Q ss_pred             HHHHHHHHHhhhccCCCCccccccccccccccccchhhh--------hhhHHHHHHHHHHHHHHHhccCC
Q psy11025        449 VAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQE--------SEHLLAIGRLAVALVLVQLARGD  510 (535)
Q Consensus       449 vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~--------~~~~~~~~~l~l~a~lc~L~~gD  510 (535)
                      |.+.+++++|..  .+|+|.+||||+|+.+| +.+++++        +.+|+.+.+|.-|.+.+.|..+-
T Consensus       212 v~a~~ALeky~~--~dP~F~dsREckflk~L-~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~  278 (288)
T KOG1586|consen  212 VNAQRALEKYQE--LDPAFTDSRECKFLKDL-LDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKK  278 (288)
T ss_pred             HHHHHHHHHHHh--cCCcccccHHHHHHHHH-HHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            999999999877  79999999999999998 8875544        77899999999999999886543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.87  E-value=2.4e-21  Score=197.46  Aligned_cols=188  Identities=24%  Similarity=0.291  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHhc-------hHHHHHHHHHHHHHH-------------------HhC--HHHHHHHHHHHHHHHHhC--CH
Q psy11025        319 DAALTLYSRAAD-------VAHGEDNYKQAAEYI-------------------SRN--REAASTVLEKGAKSLEEL--KS  368 (535)
Q Consensus       319 D~AA~lYekAA~-------~~eAa~af~kAA~~y-------------------~~~--~~~AA~~l~~AAk~~ek~--~~  368 (535)
                      ++|+++|++|+.       ...|+.+|.+|+.||                   ...  +..||+++.++|++|++.  ++
T Consensus        52 ~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~  131 (282)
T PF14938_consen   52 EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDY  131 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--H
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCH
Confidence            577777777775       234555555555554                   332  345888999999999887  69


Q ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHhcCC
Q psy11025        369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGD  447 (535)
Q Consensus       369 ~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~-~~~a~rl~la~il~~L~~~D  447 (535)
                      ++|+++|++|+++|..+|+...+++|+.++|.++.+.++|++|+++|++++..+..... -..+.+..+.++||+|+.||
T Consensus       132 e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D  211 (282)
T PF14938_consen  132 EKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD  211 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999987755432 33566777888999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCccccccccccccccccchhhh--------hhhHHHHHHHHHHHHHHHhccC
Q psy11025        448 TVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQE--------SEHLLAIGRLAVALVLVQLARG  509 (535)
Q Consensus       448 ~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~--------~~~~~~~~~l~l~a~lc~L~~g  509 (535)
                      .|+|.++|++|..  .+|+|..|||+.++.+| +.+|+.+        +.+|+.+.++.-|.+-|+|...
T Consensus       212 ~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l-~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k  278 (282)
T PF14938_consen  212 YVAARKALERYCS--QDPSFASSREYKFLEDL-LEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIK  278 (282)
T ss_dssp             HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHH-HHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--hCCCCCCcHHHHHHHHH-HHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence            9999999998655  56889999999999999 9987765        6689999999999998888643

>KOG1585|consensus

Probab=99.86  E-value=4e-21  Score=186.90  Aligned_cols=165  Identities=31%  Similarity=0.393  Sum_probs=155.3

Q ss_pred             HHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHH
Q psy11025        320 AALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQ  390 (535)
Q Consensus       320 ~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~  390 (535)
                      .||..||+||.       |.++.+.|+||+++|.+  +++.||.++++||+++|..+|++|+++|++|+.+++.+||.++
T Consensus        69 hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~m  148 (308)
T KOG1585|consen   69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQM  148 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence            57778888775       67899999999999976  6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccc
Q psy11025        391 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCES  470 (535)
Q Consensus       391 Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~s  470 (535)
                      |.+.+.+++.++++.++|.+|...+.++..+...-+.+...++.+|++||++|...|+|.|.++|++   +|+.|.|+.|
T Consensus       149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~---~~qip~f~~s  225 (308)
T KOG1585|consen  149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD---CSQIPAFLKS  225 (308)
T ss_pred             HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc---hhcCccccCh
Confidence            9999999999999999999999999999999999999999999999999999999999999999986   7888999999


Q ss_pred             ccccccccccccchhhhh
Q psy11025        471 GSSSFSFSLGKAGYHQES  488 (535)
Q Consensus       471 re~~~l~~L~l~ay~~~~  488 (535)
                      .++.-+++| |.+|++++
T Consensus       226 ed~r~lenL-L~ayd~gD  242 (308)
T KOG1585|consen  226 EDSRSLENL-LTAYDEGD  242 (308)
T ss_pred             HHHHHHHHH-HHHhccCC
Confidence            999999999 99998865

>KOG4626|consensus

Probab=97.73  E-value=0.00049  Score=75.74  Aligned_cols=60  Identities=13%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        356 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       356 l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~  421 (535)
                      |-.-|+++++.. ..+|+.||.+|..+.-.-      ++.+...|-++-..+.+++|+.+|+.+.+.
T Consensus       323 y~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v  383 (966)
T KOG4626|consen  323 YNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEV  383 (966)
T ss_pred             HhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence            344455555543 667777777776542211      223334444444445555555555554433

>KOG1840|consensus

Probab=97.72  E-value=0.0021  Score=70.93  Aligned_cols=140  Identities=20%  Similarity=0.239  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHHHhc-----------------------------hHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHH
Q psy11025        316 LKPDAALTLYSRAAD-----------------------------VAHGEDNYKQAAEYISR----NREAASTVLEKGAKS  362 (535)
Q Consensus       316 ~K~D~AA~lYekAA~-----------------------------~~eAa~af~kAA~~y~~----~~~~AA~~l~~AAk~  362 (535)
                      -|+++|..+|++|=.                             +.+|..++++|.+++++    ++.+.+..|-..+-.
T Consensus       255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~  334 (508)
T KOG1840|consen  255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI  334 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence            488899999998743                             35788888888888865    344566666666666


Q ss_pred             HHhCC-HHHHHHHHHHHHHHHhcC-CcHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHH
Q psy11025        363 LEELK-SDAALTLYSRAADVAHGE-DNYK-QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE----HLLAIGRLA  435 (535)
Q Consensus       363 ~ek~~-~~eAie~y~kAaely~~e-gr~~-~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e----~~~~a~rl~  435 (535)
                      +...+ +++|+.+|++|..+|..- |... +-+.++.+.|++|-..|+|.+|.++|+++.......+    +.....-+-
T Consensus       335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~  414 (508)
T KOG1840|consen  335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ  414 (508)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence            66655 999999999999998732 4445 8889999999999999999999999999987764421    221222222


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q psy11025        436 VALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       436 la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ++.-..++..+..  |...|++
T Consensus       415 la~~~~~~k~~~~--a~~l~~~  434 (508)
T KOG1840|consen  415 LAEAYEELKKYEE--AEQLFEE  434 (508)
T ss_pred             HHHHHHHhcccch--HHHHHHH
Confidence            2222345555554  6677776

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.52  E-value=0.0015  Score=52.87  Aligned_cols=72  Identities=17%  Similarity=0.314  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        352 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~-~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      .+.+|..-|.+|...+ +++|+++|++|.+++...|... .-+.++..+|.++...|+|++|+++|+++.++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            5677888888888765 9999999999999987777655 4699999999999999999999999999987765

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.50  E-value=0.018  Score=56.36  Aligned_cols=172  Identities=13%  Similarity=-0.023  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|.+.+++.+|...|.++...+..++. ...++..-+.++.+. ++++|+..|+++++.+.......   ..+-..
T Consensus        38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~a~~~~  113 (235)
T TIGR03302        38 EEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD---YAYYLR  113 (235)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH---HHHHHH
Confidence            5666677778899999999998877654443 334455556776664 59999999999999987665432   233344


Q ss_pred             HHHHHH--------hhhHHHHHHHHHHHHHHHHHhhH----HH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        399 ARMCVR--------VKEFDKAADLIRQEIGYHQESEH----LL-------AIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       399 Ael~e~--------~~~y~~Aie~ye~~~~~~~a~e~----~~-------~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      +.++..        .+++++|++.|++..+.+-....    ..       ...........+++..|+...|+..|+++.
T Consensus       114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al  193 (235)
T TIGR03302       114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV  193 (235)
T ss_pred             HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            444443        37899999999998766533211    11       111111223345677788888888888754


Q ss_pred             hccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHh
Q psy11025        460 NCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  521 (535)
Q Consensus       460 ~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~~  521 (535)
                      ..+.+.                          +......+..|.++...||.-.|...++.+
T Consensus       194 ~~~p~~--------------------------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       194 ENYPDT--------------------------PATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHCCCC--------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            422210                          001223467789999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.31  E-value=0.012  Score=53.91  Aligned_cols=135  Identities=21%  Similarity=0.225  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q psy11025        350 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL  429 (535)
Q Consensus       350 ~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~  429 (535)
                      ..|+..|..+...+...++..+...+.+=+.-|.   ....+......+|+++...|+|++|++.|+.+.... ....+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~   84 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYP---SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELK   84 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHH
Confidence            3477778888888777777776665554444333   334666777778888888899999999999987755 333455


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Q psy11025        430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARG  509 (535)
Q Consensus       430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~g  509 (535)
                      ..+++.++.+++.+  ++...|...++.+..    .                 .       |....  ....|-+++..|
T Consensus        85 ~~a~l~LA~~~~~~--~~~d~Al~~L~~~~~----~-----------------~-------~~~~~--~~~~Gdi~~~~g  132 (145)
T PF09976_consen   85 PLARLRLARILLQQ--GQYDEALATLQQIPD----E-----------------A-------FKALA--AELLGDIYLAQG  132 (145)
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHhccC----c-----------------c-------hHHHH--HHHHHHHHHHCC
Confidence            55666666555544  555558777764211    0                 1       11121  234588999999


Q ss_pred             CHHHHHHHHHH
Q psy11025        510 DTVAAEKAFKE  520 (535)
Q Consensus       510 D~V~A~~a~~~  520 (535)
                      |.-.|..+|+.
T Consensus       133 ~~~~A~~~y~~  143 (145)
T PF09976_consen  133 DYDEARAAYQK  143 (145)
T ss_pred             CHHHHHHHHHH
Confidence            99999998874

>KOG1840|consensus

Probab=97.29  E-value=0.024  Score=62.77  Aligned_cols=177  Identities=16%  Similarity=0.191  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHh---CHHH-HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcC-Cc-HHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISR---NREA-ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-DN-YKQAA  392 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~---~~~~-AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~e-gr-~~~Aa  392 (535)
                      ..+..|...+.+++|...|.+|....++   ..+. =+.++...|.+|-..+ +.+|+.+|++|..++... |. .-.-+
T Consensus       204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va  283 (508)
T KOG1840|consen  204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA  283 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            3788999999999999999999988654   2222 3455557889998876 999999999999997633 32 34556


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh---hHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcc
Q psy11025        393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES---EHLLAIG-RLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERC  468 (535)
Q Consensus       393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~---e~~~~a~-rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~  468 (535)
                      ..+.++|.+|...|+|.+|-.+|+++.+++...   .....+. -.-++++.+....++.  |...|.+-          
T Consensus       284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee--a~~l~q~a----------  351 (508)
T KOG1840|consen  284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE--AKKLLQKA----------  351 (508)
T ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH--HHHHHHHH----------
Confidence            789999999999999999999999999988762   1111222 2223344445444444  77777651          


Q ss_pred             ccccccccccccccchhhhhhhHH-HHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        469 ESGSSSFSFSLGKAGYHQESEHLL-AIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       469 ~sre~~~l~~L~l~ay~~~~~~~~-~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                  ++-|....++.+ .+.+..-..+.|++.+|-+-.|...+++
T Consensus       352 ------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~  392 (508)
T KOG1840|consen  352 ------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK  392 (508)
T ss_pred             ------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence                        111212222333 4455556778999999999999988877

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.18  E-value=0.015  Score=54.64  Aligned_cols=125  Identities=17%  Similarity=0.125  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+.+++.+|...|.++....   +.. +..+...+.++... ++++|+++|.++.++.....      ..+...
T Consensus        36 ~la~~~~~~~~~~~A~~~~~~~l~~~---p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~  105 (234)
T TIGR02521        36 QLALGYLEQGDLEVAKENLDKALEHD---PDD-YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLNNY  105 (234)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC---ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHH
Confidence            34556666677888888888886543   222 23444556666554 58999999999988754432      355667


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      +.++...++|++|+++|++..+......    ........+.+....|+...|...|++.
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~  161 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQ----PARSLENAGLCALKAGDFDKAEKYLTRA  161 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcccccc----chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7788888999999999988865321110    0111111234556667777788888763

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.98  E-value=0.039  Score=50.43  Aligned_cols=128  Identities=23%  Similarity=0.180  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhc------hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcHHHH
Q psy11025        319 DAALTLYSRAAD------VAHGEDNYKQAAEYISRNREAASTVLEKGAKSL-EELKSDAALTLYSRAADVAHGEDNYKQA  391 (535)
Q Consensus       319 D~AA~lYekAA~------~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~-ek~~~~eAie~y~kAaely~~egr~~~A  391 (535)
                      +.|...|+++-.      +.++...+.+-..-|..++ -+..+....|+++ ...++++|++.|+.+++..   ......
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~   84 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELK   84 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHH
Confidence            367777776543      4444444444333332232 2444555555555 4566999999999998854   224556


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      .....++|.++...++|++|+.+++......     +.......  .+-+.+..||...|+.+|++
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~-----~~~~~~~~--~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQIPDEA-----FKALAAEL--LGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccCcc-----hHHHHHHH--HHHHHHHCCCHHHHHHHHHH
Confidence            6677789999999999999999997642211     11111111  23456678999889999974

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.94  E-value=0.063  Score=56.28  Aligned_cols=129  Identities=13%  Similarity=0.054  Sum_probs=79.1

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNRE-AASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~-~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      -+.+|.+.+++.+|.+.|.++......... .-+..+...+.++.+ .++++|+.+|.++.++....      ...+...
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l  220 (389)
T PRK11788        147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC------VRASILL  220 (389)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHH
Confidence            455677777788888888777654322222 123344455555544 45899999999998875332      2355667


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      |.++...+++++|+++|++.....-.  ...   .....++.++...|+...|...|++...
T Consensus       221 a~~~~~~g~~~~A~~~~~~~~~~~p~--~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        221 GDLALAQGDYAAAIEALERVEEQDPE--YLS---EVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHChh--hHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888899999999999988654211  100   1111112334456777778888876433

>KOG4626|consensus

Probab=96.94  E-value=0.015  Score=64.50  Aligned_cols=138  Identities=22%  Similarity=0.201  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHHHhc---------------------hHHHHHHHHHHHHHHH--------------h--CHHHHHHHHHHH
Q psy11025        317 KPDAALTLYSRAAD---------------------VAHGEDNYKQAAEYIS--------------R--NREAASTVLEKG  359 (535)
Q Consensus       317 K~D~AA~lYekAA~---------------------~~eAa~af~kAA~~y~--------------~--~~~~AA~~l~~A  359 (535)
                      .+|.|..||.+|.+                     .+-|.++|++|.+..-              +  +-.+|..||.+|
T Consensus       267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA  346 (966)
T ss_pred             cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence            56899999999985                     5668888888765431              1  223455555544


Q ss_pred             --------------HHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-
Q psy11025        360 --------------AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ-  423 (535)
Q Consensus       360 --------------Ak~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~-  423 (535)
                                    +++|.+.. .++|+.+|++|.++|.+-      +......|-+|-+.|++.+|+..|.++.+.-- 
T Consensus       347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~  420 (966)
T KOG4626|consen  347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT  420 (966)
T ss_pred             HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence                          45555544 899999999999998654      23456778888888999999999988865431 


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccc
Q psy11025        424 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCE  469 (535)
Q Consensus       424 a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~  469 (535)
                      -.+.+.+.|       ...-..||..+|+.+|.+-..  -+|+|+.
T Consensus       421 fAda~~NmG-------nt~ke~g~v~~A~q~y~rAI~--~nPt~Ae  457 (966)
T KOG4626|consen  421 FADALSNMG-------NTYKEMGDVSAAIQCYTRAIQ--INPTFAE  457 (966)
T ss_pred             HHHHHHhcc-------hHHHHhhhHHHHHHHHHHHHh--cCcHHHH
Confidence            123333333       223346777777777776322  2455533

>KOG2003|consensus

Probab=96.79  E-value=0.079  Score=56.99  Aligned_cols=139  Identities=17%  Similarity=0.136  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHhc----h----------HHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHhC-CHHHHHHHHHH
Q psy11025        316 LKPDAALTLYSRAAD----V----------AHGEDNYKQAAEYISRNRE---AASTVLEKGAKSLEEL-KSDAALTLYSR  377 (535)
Q Consensus       316 ~K~D~AA~lYekAA~----~----------~eAa~af~kAA~~y~~~~~---~AA~~l~~AAk~~ek~-~~~eAie~y~k  377 (535)
                      -.+|.|++.|..|=+    |          .++...+.+|-+|+.+..-   --+..|++.|++||-+ +|.+||++|.+
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            356789999988755    1          2455555666666654221   2477899999999986 59999999998


Q ss_pred             HHH--------------HHhcCCcHHHHHHHHHHH--------------HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q psy11025        378 AAD--------------VAHGEDNYKQAAEYISRA--------------ARMCVRVKEFDKAADLIRQEIGYHQESEHLL  429 (535)
Q Consensus       378 Aae--------------ly~~egr~~~Aa~~l~ka--------------Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~  429 (535)
                      |..              +|..+|..++|-+|+-.-              |..|..-+-.++||.+||+++-.      ..
T Consensus       584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali------qp  657 (840)
T KOG2003|consen  584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI------QP  657 (840)
T ss_pred             hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc------Cc
Confidence            865              455555555555554221              22222233444555555554211      12


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      +..+|-+-...|.-..|.+..|-..|.++.+
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            2234444333455556777667666666444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.69  E-value=0.057  Score=56.66  Aligned_cols=98  Identities=22%  Similarity=0.204  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  433 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r  433 (535)
                      .+...+.+|... ++++|..+|.++.+.   ..   .....+...+.++...++|++|++.|++........... ....
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~---~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~  181 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDE---GD---FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAH  181 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcC---Cc---chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-HHHH
Confidence            444555555543 367777777766543   11   122345556667777888888888888765543211110 1111


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        434 LAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       434 l~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      +.+..+.+.+..++...|...|++..
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al  207 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKAL  207 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            12222344555677777877777643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.63  E-value=0.07  Score=60.42  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=17.0

Q ss_pred             HHHHHHHhccCCHHHHHHHHHH
Q psy11025        499 VALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       499 l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ...+-+++..|+...|-..|++
T Consensus       546 ~~la~~~~~~g~~~eAi~~~e~  567 (615)
T TIGR00990       546 ATMAQLLLQQGDVDEALKLFER  567 (615)
T ss_pred             HHHHHHHHHccCHHHHHHHHHH
Confidence            4557788888888888887776

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.62  E-value=0.13  Score=52.89  Aligned_cols=182  Identities=15%  Similarity=0.029  Sum_probs=95.7

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +.+|.+.|.+.+|...|.+|....-+.    +.+|...+..+... ++++|++.|.+|+++--..      ...+...|.
T Consensus        71 g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~  140 (296)
T PRK11189         71 GVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAYLNRGI  140 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence            445666667778888888877654222    23455556666654 4888998898888874433      123455666


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccccc
Q psy11025        401 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLG  480 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~  480 (535)
                      ++...|+|++|++.|++..+..-.... . .  ++.  .+ ....++...|...|++...-...+...-..-...+.++.
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~~~-~-~--~~~--~l-~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~  213 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPNDPY-R-A--LWL--YL-AESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKIS  213 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH-H-H--HHH--HH-HHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCC
Confidence            666678888888888887654322211 0 1  000  01 122445555666665422110000000000000000000


Q ss_pred             --------ccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        481 --------KAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       481 --------l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                              +..+..............+..|.++...||...|...|++
T Consensus       214 ~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~  261 (296)
T PRK11189        214 EETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL  261 (296)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                    0111111111111223456779999999999999999987

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.54  E-value=0.056  Score=61.21  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=70.1

Q ss_pred             HHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11025        360 AKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL  438 (535)
Q Consensus       360 Ak~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~  438 (535)
                      +.++... ++++|+.+|.+|+++....      ..++...|.++...|+|++|+..|+++.+..-.....    ...+  
T Consensus       372 a~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~----~~~l--  439 (615)
T TIGR00990       372 ASMNLELGDPDKAEEDFDKALKLNSED------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS----HIQL--  439 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH----HHHH--
Confidence            3334333 4777777777777663222      2355566777777788888888888876554322111    1111  


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy11025        439 VLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAF  518 (535)
Q Consensus       439 il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~  518 (535)
                      ..++...|+...|...|++.....                             +.........|.+++..|+...|...|
T Consensus       440 a~~~~~~g~~~eA~~~~~~al~~~-----------------------------P~~~~~~~~lg~~~~~~g~~~~A~~~~  490 (615)
T TIGR00990       440 GVTQYKEGSIASSMATFRRCKKNF-----------------------------PEAPDVYNYYGELLLDQNKFDEAIEKF  490 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-----------------------------CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            234445667666777777532210                             001112244578888899999998888


Q ss_pred             HH
Q psy11025        519 KE  520 (535)
Q Consensus       519 ~~  520 (535)
                      ++
T Consensus       491 ~~  492 (615)
T TIGR00990       491 DT  492 (615)
T ss_pred             HH
Confidence            77

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.53  E-value=0.19  Score=47.16  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=93.8

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +.+|...+++.+|.+.|.++........    ..+...+.++... ++++|+++|.++.......    .-...+..+|.
T Consensus        72 a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~  143 (234)
T TIGR02521        72 ALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP----QPARSLENAGL  143 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----cchHHHHHHHH
Confidence            4445555556666666666655432222    2344445555544 5899999999998753211    12334566788


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccccc
Q psy11025        401 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLG  480 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~  480 (535)
                      ++...+++++|.++|++.........   .   .......+....++...|...++++.....                 
T Consensus       144 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~---~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----------------  200 (234)
T TIGR02521       144 CALKAGDFDKAEKYLTRALQIDPQRP---E---SLLELAELYYLRGQYKDARAYLERYQQTYN-----------------  200 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCCh---H---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------
Confidence            88889999999999999876543211   1   111122445567888889888887433100                 


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        481 KAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       481 l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                 ..... .+..+.++...||...|...++.
T Consensus       201 -----------~~~~~-~~~~~~~~~~~~~~~~a~~~~~~  228 (234)
T TIGR02521       201 -----------QTAES-LWLGIRIARALGDVAAAQRYGAQ  228 (234)
T ss_pred             -----------CCHHH-HHHHHHHHHHHhhHHHHHHHHHH
Confidence                       00111 12346677788999998877665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.45  E-value=0.071  Score=52.14  Aligned_cols=135  Identities=13%  Similarity=0.020  Sum_probs=83.2

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHhcCCcHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE---------LKSDAALTLYSRAADVAHGEDNYKQA  391 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek---------~~~~eAie~y~kAaely~~egr~~~A  391 (535)
                      -+.+|.+.+++.+|...|.++...+-+++. +..++...+.++-+         .++++|++.|.+++..+-.......+
T Consensus        76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a  154 (235)
T TIGR03302        76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA  154 (235)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence            345566666677777777777665533322 22234444444433         23788999999998887766443332


Q ss_pred             HH-----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        392 AE-----------YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       392 a~-----------~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      -.           ....+|.++...|+|.+|+..|++..+.+........+. +.  .+.++...|+...|...++..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~-~~--l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL-AR--LVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH-HH--HHHHHHHcCCHHHHHHHHHHHH
Confidence            21           123567788888999999999999987775443222221 11  2344556677777888887643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.44  E-value=0.067  Score=53.17  Aligned_cols=198  Identities=17%  Similarity=0.135  Sum_probs=119.9

Q ss_pred             CHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcH
Q psy11025        317 KPDAALTLYSRAA-------DVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNY  388 (535)
Q Consensus       317 K~D~AA~lYekAA-------~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~  388 (535)
                      +..+|++.+.+-|       ++..|-+.+++|-..=   |...-.++.. |.+|.+. .++.|-+.|++|+.+-...|  
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~-A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--  103 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVR-AHYYQKLGENDLADESYRKALSLAPNNG--  103 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHH-HHHHHHcCChhhHHHHHHHHHhcCCCcc--
Confidence            4457777655544       5677778888876542   2222222333 4566655 48999999999999988776  


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q psy11025        389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGY---HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP  465 (535)
Q Consensus       389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~---~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~  465 (535)
                          +++.+.+-+++..|.|++|...|+++...   .+-.+.+.+.+       +|.|..|+...|...|++--.  .++
T Consensus       104 ----dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G-------~Cal~~gq~~~A~~~l~raL~--~dp  170 (250)
T COG3063         104 ----DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG-------LCALKAGQFDQAEEYLKRALE--LDP  170 (250)
T ss_pred             ----chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH-------HHHhhcCCchhHHHHHHHHHH--hCc
Confidence                48889999999999999999999998533   33345566665       888888888888888887222  466


Q ss_pred             Cccccccccccccccccchhhhh---hhHHH---HHHHHHHHHH-HHhccCCHHHHHHHHHHh-cCCCCchhhhcc
Q psy11025        466 ERCESGSSSFSFSLGKAGYHQES---EHLLA---IGRLAVALVL-VQLARGDTVAAEKAFKEW-GNCCEAPEINSH  533 (535)
Q Consensus       466 ~f~~sre~~~l~~L~l~ay~~~~---~~~~~---~~~l~l~a~l-c~L~~gD~V~A~~a~~~~-~~F~~s~E~~~~  533 (535)
                      .|..++..++-..++...|....   +.|..   -..-+||.+| +-=..||.-.+.+-=..+ -.|.+|.|+++.
T Consensus       171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f  246 (250)
T COG3063         171 QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF  246 (250)
T ss_pred             CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence            66555544433222111121110   00000   1111233332 122236665554433334 789999998864

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.44  E-value=0.087  Score=60.07  Aligned_cols=26  Identities=23%  Similarity=0.180  Sum_probs=14.6

Q ss_pred             HHHHHHHHHhC-CHHHHHHHHHHHHHH
Q psy11025        356 LEKGAKSLEEL-KSDAALTLYSRAADV  381 (535)
Q Consensus       356 l~~AAk~~ek~-~~~eAie~y~kAael  381 (535)
                      +...+.++... ++++|+.+|+++..+
T Consensus       638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~  664 (899)
T TIGR02917       638 LLLLADAYAVMKNYAKAITSLKRALEL  664 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            33444445443 367777777766554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1155|consensus

Probab=96.42  E-value=0.041  Score=59.38  Aligned_cols=65  Identities=20%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        353 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       353 A~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      ...++--++||++.+ +++|+.||.+|+.+=..+|      ..+.++|+++++.+++++|+.+|++-.+-..
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~------~~l~~LakLye~l~d~~eAa~~yek~v~~~~  497 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG------SALVRLAKLYEELKDLNEAAQYYEKYVEVSE  497 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            345666789999987 9999999999998755543      4789999999999999999999999887653

>KOG3616|consensus

Probab=96.39  E-value=0.015  Score=65.31  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy11025        377 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVA  437 (535)
Q Consensus       377 kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la  437 (535)
                      +|+.+....-....+..+|..+|+-|...++|+.|-++|-+.+..-.+...+.++++|.-+
T Consensus       750 kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  750 KAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             hhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHH
Confidence            4444444333345677788888888887788888877777776666666666666666543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.38  E-value=0.039  Score=56.17  Aligned_cols=106  Identities=11%  Similarity=0.021  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025        318 PDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYIS  396 (535)
Q Consensus       318 ~D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~  396 (535)
                      |+.|..++.+.+++.+|...|.+....|-+++. +.+++...|.+|-.. ++++|+..|.+.++.|-+.   ..+.+.+.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dAl~  221 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADAMF  221 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHHHH
Confidence            456777766668899999999998887755433 455667777777654 5999999999999999877   45667788


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQESEH  427 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~  427 (535)
                      ++|.++...+++.+|+.+|++..+.|-....
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            8999999999999999999999877755443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.34  E-value=0.11  Score=50.48  Aligned_cols=159  Identities=16%  Similarity=0.082  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  431 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a  431 (535)
                      +-..|..|-..+.+.+..+|++.|++-...|-...   .+.+.+..+|..+-+.++|.+|+..|++..+.+-.......+
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            55678888889999899999999999999998874   455566788888888999999999999998887543322222


Q ss_pred             HHHHHHHHHHHHh--------cCCHH---HHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHH
Q psy11025        432 GRLAVALVLVQLA--------RGDTV---AAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVA  500 (535)
Q Consensus       432 ~rl~la~il~~L~--------~~D~v---aA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~  500 (535)
                      . ..+  ++|+..        ..|..   .|...|+++...-++-.+     ..-.... +..      -...+..-.+.
T Consensus        82 ~-Y~~--g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-----~~~A~~~-l~~------l~~~la~~e~~  146 (203)
T PF13525_consen   82 L-YML--GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-----AEEAKKR-LAE------LRNRLAEHELY  146 (203)
T ss_dssp             H-HHH--HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-----HHHHHHH-HHH------HHHHHHHHHHH
T ss_pred             H-HHH--HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-----HHHHHHH-HHH------HHHHHHHHHHH
Confidence            1 111  112111        22332   255555554442222111     1101000 111      13344444578


Q ss_pred             HHHHHhccCCHHHHHHHHHH-hcCCCCch
Q psy11025        501 LVLVQLARGDTVAAEKAFKE-WGNCCEAP  528 (535)
Q Consensus       501 a~lc~L~~gD~V~A~~a~~~-~~~F~~s~  528 (535)
                      .+-.++.+|.+++|-+.++. +-.|.+|.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~  175 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTP  175 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence            88999999999999999887 34444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.23  E-value=0.18  Score=60.34  Aligned_cols=23  Identities=17%  Similarity=0.086  Sum_probs=20.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHH
Q psy11025        498 AVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       498 ~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ....+++++..||...|...+++
T Consensus       680 ~~nLA~al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        680 IRQLAYVNQRLDDMAATQHYARL  702 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
Confidence            46789999999999999999987

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.22  E-value=0.27  Score=56.11  Aligned_cols=54  Identities=20%  Similarity=0.320  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHH--------------HHHhcCCcHHHHHHHHHHHH--------------HHHHHhhhHHHHHHHHHHHH
Q psy11025        368 SDAALTLYSRAA--------------DVAHGEDNYKQAAEYISRAA--------------RMCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       368 ~~eAie~y~kAa--------------ely~~egr~~~Aa~~l~kaA--------------el~e~~~~y~~Aie~ye~~~  419 (535)
                      .++|+.+|.++.              .+|...|++..|..++.++.              .++...++|++|++.|++..
T Consensus       549 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  628 (899)
T TIGR02917       549 EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL  628 (899)
T ss_pred             HHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            556666665552              23444555555555554443              33444567777777776664


Q ss_pred             HH
Q psy11025        420 GY  421 (535)
Q Consensus       420 ~~  421 (535)
                      +.
T Consensus       629 ~~  630 (899)
T TIGR02917       629 AL  630 (899)
T ss_pred             Hh
Confidence            43

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.15  E-value=0.048  Score=42.50  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=49.1

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +..|...+++.+|...|.++.......+    ..+...+.++... ++++|+++|.+++.+.....      ..+..+|.
T Consensus         7 a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~   76 (100)
T cd00189           7 GNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYNLGL   76 (100)
T ss_pred             HHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHHHHH
Confidence            3344445556666666666655432222    2344445555443 36677777777766544432      45556666


Q ss_pred             HHHHhhhHHHHHHHHHHHH
Q psy11025        401 MCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~  419 (535)
                      ++...+++++|.+.+++..
T Consensus        77 ~~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          77 AYYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             HHHHHHhHHHHHHHHHHHH
Confidence            6666667777776665543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.12  E-value=0.094  Score=63.93  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=16.4

Q ss_pred             HHHHHHHhccCCHHHHHHHHHH
Q psy11025        499 VALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       499 l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ...+.++...|+...|...+++
T Consensus       675 ~~la~~~~~~g~~~eA~~~~~~  696 (1157)
T PRK11447        675 RRVALAWAALGDTAAAQRTFNR  696 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHH
Confidence            3456677788888888888877

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.06  E-value=0.06  Score=46.01  Aligned_cols=98  Identities=13%  Similarity=0.045  Sum_probs=52.9

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      .+..+.+-+++.+|.+.|.++...+-+++. ...++...+.++.+. ++++|+.+|+++...+.+.   ......+...|
T Consensus         8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~   83 (119)
T TIGR02795         8 AALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---PKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---CcccHHHHHHH
Confidence            344445555666666666666544322211 233444455555543 3666777777666655332   11233455666


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      .++...+++.+|+..|++..+.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHC
Confidence            66666667777777766655443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.04  E-value=0.18  Score=50.58  Aligned_cols=161  Identities=11%  Similarity=0.033  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q psy11025        351 AASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA  430 (535)
Q Consensus       351 ~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~  430 (535)
                      .+...|.+|-+.+++.+.++|++.|++....|-..   ..+.+....+|..+-+.++|++|+..|++..+.+-......-
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            35667888888888888999999999998888766   455555778888888889999999999998888754432222


Q ss_pred             HHHHHHHHHHHHHh---------------cCCHHHHH---HHHHHhhhccCCCCccccccccccccccccchhhhhhhHH
Q psy11025        431 IGRLAVALVLVQLA---------------RGDTVAAE---KAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLL  492 (535)
Q Consensus       431 a~rl~la~il~~L~---------------~~D~vaA~---~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~  492 (535)
                      +.-.   .++|+..               .-|...+.   +.|+++.+.-++     |....-.... +..+      ..
T Consensus       108 a~Y~---~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~ya~~A~~r-l~~l------~~  172 (243)
T PRK10866        108 VLYM---RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQYTTDATKR-LVFL------KD  172 (243)
T ss_pred             HHHH---HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----ChhHHHHHHH-HHHH------HH
Confidence            2111   0122211               12443333   444443332222     1111101110 1111      23


Q ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHH----hcCCCCchh
Q psy11025        493 AIGRLAVALVLVQLARGDTVAAEKAFKE----WGNCCEAPE  529 (535)
Q Consensus       493 ~~~~l~l~a~lc~L~~gD~V~A~~a~~~----~~~F~~s~E  529 (535)
                      .+.+..+..+-.++-+|.+++|-+.++.    +|+-...+|
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~e  213 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRD  213 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHH
Confidence            3444456777788889999999988887    355444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.02  E-value=0.29  Score=46.79  Aligned_cols=127  Identities=15%  Similarity=0.133  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy11025        374 LYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK  453 (535)
Q Consensus       374 ~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~  453 (535)
                      -++.-.+-+....--..-.+.+...|++|.+.|+++.|++.|.+..+.....+.....+   +..|-+.+..+|...+..
T Consensus        18 ~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~---l~~irv~i~~~d~~~v~~   94 (177)
T PF10602_consen   18 KLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMC---LNVIRVAIFFGDWSHVEK   94 (177)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHH---HHHHHHHHHhCCHHHHHH
Confidence            33333444443333456667888999999999999999999999877765554433333   223344556678766666


Q ss_pred             HHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-hcCCCC
Q psy11025        454 AFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE-WGNCCE  526 (535)
Q Consensus       454 ~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~-~~~F~~  526 (535)
                      .+++..                       ...+..+++....++-...||.+|+.+|+-.|-+.|=+ .++|..
T Consensus        95 ~i~ka~-----------------------~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~  145 (177)
T PF10602_consen   95 YIEKAE-----------------------SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTS  145 (177)
T ss_pred             HHHHHH-----------------------HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence            666522                       22222344777888888899999999999999999877 488864

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.01  E-value=0.27  Score=56.47  Aligned_cols=19  Identities=11%  Similarity=0.144  Sum_probs=10.3

Q ss_pred             HHHHhhhHHHHHHHHHHHH
Q psy11025        401 MCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~  419 (535)
                      ++...+++++|+..|++..
T Consensus       221 ~l~~~g~~~eA~~~~~~al  239 (656)
T PRK15174        221 TLCAVGKYQEAIQTGESAL  239 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            3344556666666665554

>KOG1155|consensus

Probab=95.95  E-value=0.041  Score=59.34  Aligned_cols=95  Identities=22%  Similarity=0.231  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHH-HHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-QAAEYISR  397 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~-~Aa~~l~k  397 (535)
                      --++||+|-.++.+|.+||.+|..+    ++.-+..|++.|+++|+.. .++|+.+|++-++.+..+|-.. .-.+...=
T Consensus       437 aLG~CY~kl~~~~eAiKCykrai~~----~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f  512 (559)
T KOG1155|consen  437 ALGECYEKLNRLEEAIKCYKRAILL----GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF  512 (559)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence            3678888888888888888888765    3444668999999999964 8999999999999876555322 13333333


Q ss_pred             HHHHHHHhhhHHHHHHHHHHH
Q psy11025        398 AARMCVRVKEFDKAADLIRQE  418 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~  418 (535)
                      .|+.+-+.++|++|..+.-..
T Consensus       513 LA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  513 LAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHHHHHhhcchHHHHHHHHHH
Confidence            677777788888887765443

>PRK12370 invasion protein regulator; Provisional

Probab=95.93  E-value=0.3  Score=54.73  Aligned_cols=22  Identities=27%  Similarity=0.212  Sum_probs=17.3

Q ss_pred             HHHHHHHhccCCHHHHHHHHHH
Q psy11025        499 VALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       499 l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ...+.|++..|+.-.|...+.+
T Consensus       445 ~~la~~l~~~G~~~eA~~~~~~  466 (553)
T PRK12370        445 SMQVMFLSLKGKHELARKLTKE  466 (553)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHH
Confidence            4457777788998888888877

>KOG1129|consensus

Probab=95.88  E-value=0.12  Score=53.89  Aligned_cols=93  Identities=14%  Similarity=0.166  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        319 DAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       319 D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      ..-+.||-+-+.+.+|-+.|+.+-.-+ ..++    .|--.+|.|...+ |+.|...|.+..+.|-.+      .-++..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~-~~~d----TfllLskvY~ridQP~~AL~~~~~gld~fP~~------VT~l~g  295 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPD----TFLLLSKVYQRIDQPERALLVIGEGLDSFPFD------VTYLLG  295 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC-Cchh----HHHHHHHHHHHhccHHHHHHHHhhhhhcCCch------hhhhhh
Confidence            478899999998889988888765433 2333    3666678888877 999999999988887666      457788


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      +|+|++.++.+++|+++|+.+.+..
T Consensus       296 ~ARi~eam~~~~~a~~lYk~vlk~~  320 (478)
T KOG1129|consen  296 QARIHEAMEQQEDALQLYKLVLKLH  320 (478)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            9999999999999999999987663

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.78  E-value=0.071  Score=42.96  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=44.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCH--H-HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHh
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNR--E-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAH  383 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~--~-~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~  383 (535)
                      =+.+|..-+++.+|.++|.+|.++....+  + .-+.++...|.++...+ +++|+++|++|.+++.
T Consensus        11 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen   11 LARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            34556666668888888888888854322  2 24777888888887765 8888888888888764

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.53  E-value=0.76  Score=47.54  Aligned_cols=93  Identities=18%  Similarity=0.208  Sum_probs=55.9

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccc
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFS  476 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l  476 (535)
                      ..|.++...|+|.+|.+.+++..+.-.....      .......+....|+...|...+++.......            
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~------------  180 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDAW------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDC------------  180 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCC------------
Confidence            3445666678899999999888665433211      1111123444567777788888763221100            


Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        477 FSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       477 ~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                   .........+..+.|++..||...|...+++
T Consensus       181 -------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~  211 (355)
T cd05804         181 -------------SSMLRGHNWWHLALFYLERGDYEAALAIYDT  211 (355)
T ss_pred             -------------CcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                         0111122234568899999999999999987

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.34  E-value=0.2  Score=38.88  Aligned_cols=87  Identities=14%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             HHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Q psy11025        358 KGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLA  435 (535)
Q Consensus       358 ~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e-~~~~a~rl~  435 (535)
                      ..|.++-. .++++|+.++.++++......      ..+...|.++...+++++|++.|++..+...... ....     
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----   73 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYN-----   73 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHH-----
Confidence            33444443 458999999999988755442      5677888889889999999999998876544332 1222     


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q psy11025        436 VALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       436 la~il~~L~~~D~vaA~~~~e~  457 (535)
                        .+.+++..++...|...++.
T Consensus        74 --~~~~~~~~~~~~~a~~~~~~   93 (100)
T cd00189          74 --LGLAYYKLGKYEEALEAYEK   93 (100)
T ss_pred             --HHHHHHHHHhHHHHHHHHHH
Confidence              22445556777678777765

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.29  E-value=2.3  Score=40.70  Aligned_cols=105  Identities=21%  Similarity=0.225  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q psy11025        350 EAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  428 (535)
Q Consensus       350 ~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~  428 (535)
                      .+--..+..-|++|.+. +.++|+++|.++-+....   ...-.+++..+.++..-.+++.....++.++.......+-.
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~  109 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW  109 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence            34567788888888886 599999999997774333   46667777888888888899999999999988888776667


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        429 LAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       429 ~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ....|+.+..+|..|..+++-.|-+.|-+
T Consensus       110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~  138 (177)
T PF10602_consen  110 ERRNRLKVYEGLANLAQRDFKEAAELFLD  138 (177)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence            77788888899999999999888777754

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=95.24  E-value=0.66  Score=56.71  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=41.9

Q ss_pred             HHHhcCCcHHHHHHHHH----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHH
Q psy11025        380 DVAHGEDNYKQAAEYIS----------RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTV  449 (535)
Q Consensus       380 ely~~egr~~~Aa~~l~----------kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~v  449 (535)
                      +.+...|++..|..++.          ..|.++...+++++|++.|+++....-..    ..+++  .++.+.+..|+..
T Consensus       581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~----~~a~~--~la~~~~~~g~~~  654 (1157)
T PRK11447        581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN----ADARL--GLIEVDIAQGDLA  654 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH--HHHHHHHHCCCHH
Confidence            34455566666655544          35667777788888888888776543211    01111  1223444556776


Q ss_pred             HHHHHHHHhh
Q psy11025        450 AAEKAFKEWG  459 (535)
Q Consensus       450 aA~~~~e~~~  459 (535)
                      .|...|+...
T Consensus       655 eA~~~l~~ll  664 (1157)
T PRK11447        655 AARAQLAKLP  664 (1157)
T ss_pred             HHHHHHHHHh
Confidence            6777777643

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.24  E-value=0.44  Score=55.65  Aligned_cols=23  Identities=9%  Similarity=-0.017  Sum_probs=18.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHH
Q psy11025        498 AVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       498 ~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      .+..+++.|..||.-.|...+++
T Consensus       430 ~~~~a~~al~~~~~~~A~~~~~~  452 (765)
T PRK10049        430 EVEQAWTALDLQEWRQMDVLTDD  452 (765)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHH
Confidence            35667788888898888888877

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.22  E-value=0.18  Score=53.55  Aligned_cols=84  Identities=18%  Similarity=0.262  Sum_probs=50.7

Q ss_pred             hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      +++.+|..+|.+|..+   .+.. +.+|...|.+|... ++++|+.++.+|+++.-..      ...+...|.++...|+
T Consensus        16 ~~~~~Ai~~~~~Al~~---~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~~~lg~   85 (356)
T PLN03088         16 DDFALAVDLYTQAIDL---DPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTACMKLEE   85 (356)
T ss_pred             CCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCC
Confidence            4466666666666543   3333 34455555555544 3777777777777764432      2245556667777777


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11025        408 FDKAADLIRQEIGYH  422 (535)
Q Consensus       408 y~~Aie~ye~~~~~~  422 (535)
                      |++|+..|++..++.
T Consensus        86 ~~eA~~~~~~al~l~  100 (356)
T PLN03088         86 YQTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            777777777766544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.19  E-value=0.87  Score=52.30  Aligned_cols=48  Identities=13%  Similarity=0.034  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHH
Q psy11025        368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDK----AADLIRQEIGY  421 (535)
Q Consensus       368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~----Aie~ye~~~~~  421 (535)
                      +++|+..|.+|..+....      ..++...|.++...|+|++    |+..|+++...
T Consensus       228 ~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        228 YQEAIQTGESALARGLDG------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            566666666665542211      2233344556666677764    67777766544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.13  E-value=0.25  Score=46.33  Aligned_cols=99  Identities=16%  Similarity=0.170  Sum_probs=59.6

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNY-KQAAEYISRAA  399 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~-~~Aa~~l~kaA  399 (535)
                      +.+|...+++.+|..+|.+|.....+.+. .+..+...|.++... +.++|+.+|.+|+.+....... ..-+.++...+
T Consensus        42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  120 (172)
T PRK02603         42 GMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG  120 (172)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence            44555556788888888888776543332 345667777777765 4999999999999975443111 11223333333


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~  421 (535)
                      +.....++++.|+..|+++.+.
T Consensus       121 ~~~~a~~~~~~A~~~~~~A~~~  142 (172)
T PRK02603        121 EKAEEAGDQDEAEALFDKAAEY  142 (172)
T ss_pred             ChHhHhhCHHHHHHHHHHHHHH
Confidence            3333345566666666555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.12  E-value=0.17  Score=53.70  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      |..++.+|..++...++++|+++|.+|+.+.-..      ..++...|.++...++|++|+..++++.++.-.. ..+..
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~   75 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR   75 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            3456777888888888899999999998875543      3466677778888899999999999998876543 22333


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA  464 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~  464 (535)
                      .+       ++++..|+...|+..|++......+
T Consensus        76 lg-------~~~~~lg~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         76 KG-------TACMKLEEYQTAKAALEKGASLAPG  102 (356)
T ss_pred             HH-------HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            33       3344556766788888886655543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.09  E-value=0.19  Score=41.35  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q psy11025        366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR  445 (535)
Q Consensus       366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~  445 (535)
                      .++++|+.+|++.++.....  +  -..++-..|..+-+.|+|.+|++++++ ...-..    .....+.++  -|.+..
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~----~~~~~~l~a--~~~~~l   71 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS----NPDIHYLLA--RCLLKL   71 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC----HHHHHHHHH--HHHHHT
T ss_pred             ccHHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC----CHHHHHHHH--HHHHHh
Confidence            34788888898888887652  2  223555688888888999999999988 211111    111222222  334444


Q ss_pred             CCHHHHHHHHHH
Q psy11025        446 GDTVAAEKAFKE  457 (535)
Q Consensus       446 ~D~vaA~~~~e~  457 (535)
                      +....|+++|++
T Consensus        72 ~~y~eAi~~l~~   83 (84)
T PF12895_consen   72 GKYEEAIKALEK   83 (84)
T ss_dssp             T-HHHHHHHHHH
T ss_pred             CCHHHHHHHHhc
Confidence            555558888875

>KOG3617|consensus

Probab=95.02  E-value=0.75  Score=53.03  Aligned_cols=100  Identities=27%  Similarity=0.303  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhc----hHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHh------cCCc
Q psy11025        320 AALTLYSRAAD----VAHGEDNYKQAAEYISRN-REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAH------GEDN  387 (535)
Q Consensus       320 ~AA~lYekAA~----~~eAa~af~kAA~~y~~~-~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~------~egr  387 (535)
                      .|.+.|||+++    .++-..-|-++.+.|.+. .+.  ..|.=.+..+|... .+.|+.+|..|-++|.      -.|+
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk  953 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK  953 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence            45666666665    233333344555555331 121  34555667777654 8999999999999974      4577


Q ss_pred             HHHHHHHHHH---------HHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        388 YKQAAEYISR---------AARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       388 ~~~Aa~~l~k---------aAel~e~~~~y~~Aie~ye~~~~~  421 (535)
                      .+.|+..-.+         +|++||..|++.+|+.+|-++--.
T Consensus       954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            7776654432         567889999999999999887433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.70  E-value=0.38  Score=40.96  Aligned_cols=98  Identities=11%  Similarity=0.000  Sum_probs=64.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy11025        357 EKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV  436 (535)
Q Consensus       357 ~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~l  436 (535)
                      ..+-..++..+.++|+++|.+++..+....   .....+...|.++...++|.+|+++|++....+-.......+ ... 
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~~~-   81 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA-LLK-   81 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH-HHH-
Confidence            333344445569999999999998765432   234566778999999999999999999987665332111111 111 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        437 ALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       437 a~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                       ...+.+..++...|...|+++..
T Consensus        82 -~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        82 -LGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             -HHHHHHHhCChHHHHHHHHHHHH
Confidence             12345566777778888887443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553|consensus

Probab=94.63  E-value=0.36  Score=49.66  Aligned_cols=90  Identities=23%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  435 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~  435 (535)
                      =.+..++++..++.+||++|.+|+++-     +..|.-+..++| .|.++|.|+.|++-++.+..+   ...+.++   +
T Consensus        85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~-----P~nAVyycNRAA-Ay~~Lg~~~~AVkDce~Al~i---Dp~yska---y  152 (304)
T KOG0553|consen   85 KNEGNKLMKNKDYQEAVDKYTEAIELD-----PTNAVYYCNRAA-AYSKLGEYEDAVKDCESALSI---DPHYSKA---Y  152 (304)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCcchHHHHHHH-HHHHhcchHHHHHHHHHHHhc---ChHHHHH---H
Confidence            344556666666788888888887764     233455555555 566678888888777775322   1222222   1


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q psy11025        436 VALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       436 la~il~~L~~~D~vaA~~~~e~  457 (535)
                      .-+++++++.|..+.|+..|.+
T Consensus       153 ~RLG~A~~~~gk~~~A~~aykK  174 (304)
T KOG0553|consen  153 GRLGLAYLALGKYEEAIEAYKK  174 (304)
T ss_pred             HHHHHHHHccCcHHHHHHHHHh
Confidence            2224567777777777777765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.61  E-value=0.48  Score=44.15  Aligned_cols=95  Identities=15%  Similarity=0.066  Sum_probs=54.0

Q ss_pred             HhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHh
Q psy11025        328 AADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRV  405 (535)
Q Consensus       328 AA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr-~~~Aa~~l~kaAel~e~~  405 (535)
                      .+++.+|..+|.+|.....+... -+.++...+.++...+ +++|+.+|++|..+....+. ...-+.++...++++...
T Consensus        48 ~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~  126 (168)
T CHL00033         48 EGEYAEALQNYYEAMRLEIDPYD-RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ  126 (168)
T ss_pred             cCCHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence            34466677777766655322221 2345666667776654 77888888888776433221 223344455555555566


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q psy11025        406 KEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       406 ~~y~~Aie~ye~~~~~~~  423 (535)
                      |+++.|...|.+....+.
T Consensus       127 g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033        127 GDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            777777766666655443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.45  E-value=0.35  Score=48.23  Aligned_cols=140  Identities=17%  Similarity=0.067  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhH
Q psy11025        350 EAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEH  427 (535)
Q Consensus       350 ~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~  427 (535)
                      +.|++...+-|--|-+ .|+..|-..+++|.++=-..      .....-.|.+|.+.|..+.|-+.|+++..+--. .+.
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV  105 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV  105 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence            4566666665555443 45788888888887762222      123334567888889999999999998766543 456


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhc
Q psy11025        428 LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLA  507 (535)
Q Consensus       428 ~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~  507 (535)
                      +++-|.+     ||....++.  |..-|++   ...+|.                        |......+..+|+|.|-
T Consensus       106 LNNYG~F-----LC~qg~~~e--A~q~F~~---Al~~P~------------------------Y~~~s~t~eN~G~Cal~  151 (250)
T COG3063         106 LNNYGAF-----LCAQGRPEE--AMQQFER---ALADPA------------------------YGEPSDTLENLGLCALK  151 (250)
T ss_pred             hhhhhHH-----HHhCCChHH--HHHHHHH---HHhCCC------------------------CCCcchhhhhhHHHHhh
Confidence            7777744     787765555  7777775   333333                        33344445778999999


Q ss_pred             cCCHHHHHHHHHH---h-cCCCCchh
Q psy11025        508 RGDTVAAEKAFKE---W-GNCCEAPE  529 (535)
Q Consensus       508 ~gD~V~A~~a~~~---~-~~F~~s~E  529 (535)
                      +|+.-.|+.-|++   + |+|..+..
T Consensus       152 ~gq~~~A~~~l~raL~~dp~~~~~~l  177 (250)
T COG3063         152 AGQFDQAEEYLKRALELDPQFPPALL  177 (250)
T ss_pred             cCCchhHHHHHHHHHHhCcCCChHHH
Confidence            9999999988887   2 88887764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=94.42  E-value=0.39  Score=44.00  Aligned_cols=87  Identities=16%  Similarity=0.072  Sum_probs=42.1

Q ss_pred             hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Q psy11025        365 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQL  443 (535)
Q Consensus       365 k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L  443 (535)
                      ..++++|+.+|.+|+.+--..      ...+...|.++...|+|++|+..|+++...--.. +.....|       +|.+
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg-------~~l~  103 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG-------VCLK  103 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH-------HHHH
Confidence            334555666666555442221      2334445555555566666666666665554332 2233332       2333


Q ss_pred             hcCCHHHHHHHHHHhhhccCC
Q psy11025        444 ARGDTVAAEKAFKEWGNCCEA  464 (535)
Q Consensus       444 ~~~D~vaA~~~~e~~~~~~~~  464 (535)
                      ..|+...|+.+|+..-..+.+
T Consensus       104 ~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             HcCCHHHHHHHHHHHHHhCCC
Confidence            445555566666554444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.41  E-value=0.62  Score=41.13  Aligned_cols=92  Identities=16%  Similarity=0.076  Sum_probs=60.7

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|.+.+++.+|...|.++....-.+    ...+...+.++-.. ++++|+.+|.+++.+....      ...+...|
T Consensus        23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la   92 (135)
T TIGR02552        23 LAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------PRPYFHAA   92 (135)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------hHHHHHHH
Confidence            4455555666777777777776653222    23455666666543 4888888888888775332      33445667


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      .++...+++++|+..|++..+..
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhc
Confidence            77888888888888888776554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=94.40  E-value=0.49  Score=48.20  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=70.6

Q ss_pred             HHHHHHH-HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11025        356 LEKGAKS-LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL  434 (535)
Q Consensus       356 l~~AAk~-~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl  434 (535)
                      |..|... +++.++++|+..|++.+..|-...   .+...+-.+|+++...++|++|+..|+.....|-.......+.  
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl--  220 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM--  220 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH--
Confidence            4444444 334568889999999998887763   4445667899999999999999999999988876543333221  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                       +.++.|+...+|...|...|+++..
T Consensus       221 -~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        221 -FKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             1123556677899889999998544

>KOG1126|consensus

Probab=94.37  E-value=0.15  Score=57.09  Aligned_cols=120  Identities=18%  Similarity=0.215  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHH--hCHHHHHHHHHHHHHHHH---------------hCCHHHHHHHHHHHHHH--------------Hhc
Q psy11025        336 DNYKQAAEYIS--RNREAASTVLEKGAKSLE---------------ELKSDAALTLYSRAADV--------------AHG  384 (535)
Q Consensus       336 ~af~kAA~~y~--~~~~~AA~~l~~AAk~~e---------------k~~~~eAie~y~kAael--------------y~~  384 (535)
                      +.|.=+++||-  +..+.|.+|+.+|..+=+               ....|.|+.+|.+|+.+              |..
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            44555556652  233445566666554322               11267777777777643              566


Q ss_pred             CCcHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHH
Q psy11025        385 EDNYKQAAEYISRAAR--------------MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVA  450 (535)
Q Consensus       385 egr~~~Aa~~l~kaAe--------------l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~va  450 (535)
                      .|++..|--+++|+.+              ++.+.++.++|+++|+++.-+    +...-.++..-+.++..|  ++.+.
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l----d~kn~l~~~~~~~il~~~--~~~~e  575 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL----DPKNPLCKYHRASILFSL--GRYVE  575 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc----CCCCchhHHHHHHHHHhh--cchHH
Confidence            7788888888888776              456678888999999887422    222222333333345555  45555


Q ss_pred             HHHHHHHhhhc
Q psy11025        451 AEKAFKEWGNC  461 (535)
Q Consensus       451 A~~~~e~~~~~  461 (535)
                      |-..+|+...+
T Consensus       576 al~~LEeLk~~  586 (638)
T KOG1126|consen  576 ALQELEELKEL  586 (638)
T ss_pred             HHHHHHHHHHh
Confidence            88888875553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=94.35  E-value=1.5  Score=52.64  Aligned_cols=20  Identities=15%  Similarity=-0.037  Sum_probs=12.7

Q ss_pred             HHHHhcCCHHHHHHHHHHhh
Q psy11025        440 LVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       440 l~~L~~~D~vaA~~~~e~~~  459 (535)
                      ++.+..|+...|...|++..
T Consensus       685 ~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        685 YVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            44556677766777777643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=94.11  E-value=0.43  Score=37.27  Aligned_cols=60  Identities=8%  Similarity=0.163  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIG  420 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~-~y~~Aie~ye~~~~  420 (535)
                      .+..-|.++-.. ++++|+.+|.+|+++-...      ...+...|.++...+ +|.+|++.|+++.+
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            344445555444 4888888888888873222      337777777888877 78888888887654

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=93.98  E-value=0.57  Score=38.42  Aligned_cols=81  Identities=14%  Similarity=0.193  Sum_probs=49.8

Q ss_pred             hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      +++.+|...|.++......++ ... .+..-|.|+=+. +.++|++++.+ ..+-.     .. ..+.--.|+.+.++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~-~~~-~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----~~-~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNP-NSA-YLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----SN-PDIHYLLARCLLKLGK   73 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTH-HHH-HHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----CH-HHHHHHHHHHHHHTT-
T ss_pred             ccHHHHHHHHHHHHHHCCCCh-hHH-HHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----CC-HHHHHHHHHHHHHhCC
Confidence            346677777777766554333 222 334456666554 48899999887 21111     11 2233344899999999


Q ss_pred             HHHHHHHHHHH
Q psy11025        408 FDKAADLIRQE  418 (535)
Q Consensus       408 y~~Aie~ye~~  418 (535)
                      |++|+++|+++
T Consensus        74 y~eAi~~l~~~   84 (84)
T PF12895_consen   74 YEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999874

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=93.96  E-value=0.8  Score=43.13  Aligned_cols=102  Identities=17%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hH
Q psy11025        349 REAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EH  427 (535)
Q Consensus       349 ~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~  427 (535)
                      .++=...|.-|...|...+.++|..+|+-.+.+=...      ...+...|-++-..++|++||+.|..+..+--.. ..
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            3444556777888888888888888888777662222      3456667767777899999999999987554321 22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q psy11025        428 LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE  463 (535)
Q Consensus       428 ~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~  463 (535)
                      +..++       .|+|..|+...|.++|+.....|.
T Consensus       106 ~~~ag-------~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        106 PWAAA-------ECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHH-------HHHHHcCCHHHHHHHHHHHHHHhc
Confidence            34443       788899999999999998666663

>PRK12370 invasion protein regulator; Provisional

Probab=93.91  E-value=2.2  Score=47.89  Aligned_cols=18  Identities=28%  Similarity=0.172  Sum_probs=11.2

Q ss_pred             HHHhcCCHHHHHHHHHHh
Q psy11025        441 VQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       441 ~~L~~~D~vaA~~~~e~~  458 (535)
                      ++...|+...|...++++
T Consensus       450 ~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        450 FLSLKGKHELARKLTKEI  467 (553)
T ss_pred             HHHhCCCHHHHHHHHHHh
Confidence            344456766677777663

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=93.78  E-value=1.4  Score=40.97  Aligned_cols=106  Identities=15%  Similarity=0.072  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-h
Q psy11025        349 REAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-E  426 (535)
Q Consensus       349 ~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e  426 (535)
                      .+..+.++...+.++.. .++++|+.+|.+|..+....   ..-+..+..+|.++...+++++|++.|+++....... +
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~  107 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ  107 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            33456777777777765 45999999999999885322   2223477889999999999999999999987653221 1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      .....+.+..-..-.....|+...|...|.+
T Consensus       108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            2222222221111122356676555555543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.75  E-value=0.63  Score=46.77  Aligned_cols=83  Identities=16%  Similarity=0.133  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC
Q psy11025        368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD  447 (535)
Q Consensus       368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D  447 (535)
                      ....|+++.+|.+.|...++.+++..+...+|+.+...|+|++|+++|+.+...|..++-..-...+...+.-|....+|
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~  233 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD  233 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            56789999999999999999999999999999999999999999999999987777665443333333333456666667


Q ss_pred             HHH
Q psy11025        448 TVA  450 (535)
Q Consensus       448 ~va  450 (535)
                      ...
T Consensus       234 ~~~  236 (247)
T PF11817_consen  234 VED  236 (247)
T ss_pred             HHH
Confidence            643

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.72  E-value=4.6  Score=47.60  Aligned_cols=130  Identities=14%  Similarity=0.071  Sum_probs=86.0

Q ss_pred             hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH---H-HHHHHHHHHHHH
Q psy11025        365 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH---L-LAIGRLAVALVL  440 (535)
Q Consensus       365 k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~---~-~~a~rl~la~il  440 (535)
                      ..++++|..+|.+|..++...|........+...|.++...|++.+|.+.+++..+.......   . .......+  ..
T Consensus       504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~  581 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR--AQ  581 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--HH
Confidence            346899999999999998888877777778888899988899999999999998776554321   1 11111112  23


Q ss_pred             HHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        441 VQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       441 ~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      +....|+...|...+++......                   ..    ..... .......+.+++..||...|...++.
T Consensus       582 ~~~~~G~~~~A~~~~~~al~~~~-------------------~~----~~~~~-~~~~~~la~~~~~~G~~~~A~~~l~~  637 (903)
T PRK04841        582 LLWEWARLDEAEQCARKGLEVLS-------------------NY----QPQQQ-LQCLAMLAKISLARGDLDNARRYLNR  637 (903)
T ss_pred             HHHHhcCHHHHHHHHHHhHHhhh-------------------cc----CchHH-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44556888888777775221100                   00    00011 12224457788899999999888766

>KOG3617|consensus

Probab=93.70  E-value=1.1  Score=51.70  Aligned_cols=66  Identities=21%  Similarity=0.334  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhCC--HHHHHHHHHHHHHH-------HhcCC-----------cHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy11025        353 STVLEKGAKSLEELK--SDAALTLYSRAADV-------AHGED-----------NYKQAAEYISRAARMCVRVKEFDKAA  412 (535)
Q Consensus       353 A~~l~~AAk~~ek~~--~~eAie~y~kAael-------y~~eg-----------r~~~Aa~~l~kaAel~e~~~~y~~Ai  412 (535)
                      ..-++.||..||+..  .+.||.+|.+|..+       |...-           ...+-.+.+.+.|++++..++|++|+
T Consensus      1021 ~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred             chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence            345677777777753  67777777766443       11110           11122345666677777777777777


Q ss_pred             HHHHHH
Q psy11025        413 DLIRQE  418 (535)
Q Consensus       413 e~ye~~  418 (535)
                      +++-.+
T Consensus      1101 ~lL~~a 1106 (1416)
T KOG3617|consen 1101 NLLCLA 1106 (1416)
T ss_pred             HHHHHH
Confidence            666443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.52  E-value=0.56  Score=42.13  Aligned_cols=95  Identities=21%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025        355 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  433 (535)
Q Consensus       355 ~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r  433 (535)
                      +..+.|-++...+ +++|+.+|++|.+. ...|  ....+++...|..+-.+|++++|+.++++....+-..+. ....+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~--~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~-~~~l~   78 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSG--ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL-NAALR   78 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHH
Confidence            4556666776654 88888888888774 2222  234467777888888888888888888877655433222 22223


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Q psy11025        434 LAVALVLVQLARGDTVAAEKAF  455 (535)
Q Consensus       434 l~la~il~~L~~~D~vaA~~~~  455 (535)
                      ..+++.+..+.  ....|...+
T Consensus        79 ~f~Al~L~~~g--r~~eAl~~~   98 (120)
T PF12688_consen   79 VFLALALYNLG--RPKEALEWL   98 (120)
T ss_pred             HHHHHHHHHCC--CHHHHHHHH
Confidence            33343444443  333355444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=93.52  E-value=1  Score=41.19  Aligned_cols=97  Identities=11%  Similarity=0.016  Sum_probs=68.1

Q ss_pred             CCHH---HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHH
Q psy11025        316 LKPD---AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQA  391 (535)
Q Consensus       316 ~K~D---~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~A  391 (535)
                      +.|+   .-+..+.+.+.+.+|..+|.+|..+   .|..+ ..+..-|.++.. .++++|+.+|.+|+.+--..      
T Consensus        22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~-~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------   91 (144)
T PRK15359         22 VDPETVYASGYASWQEGDYSRAVIDFSWLVMA---QPWSW-RAHIALAGTWMMLKEYTTAINFYGHALMLDASH------   91 (144)
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------
Confidence            4555   2234444556678888888887543   45544 455555555554 45999999999999874433      


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        392 AEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      ...+-..|..+...|++++|++.|+++....
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3566778888888999999999999986554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.52  E-value=7.1  Score=40.26  Aligned_cols=92  Identities=12%  Similarity=0.069  Sum_probs=58.3

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +.+|...|.+.+|...|.++...-.++    +.++.-.+.++.+. ++++|+.+|.++.......  +.....++...|.
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~  194 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLAL  194 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHH
Confidence            345666677778888887776643222    12233345555544 4888888888887776542  2333445556677


Q ss_pred             HHHHhhhHHHHHHHHHHHH
Q psy11025        401 MCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~  419 (535)
                      ++...|++++|+.+|++..
T Consensus       195 ~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         195 FYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHCCCHHHHHHHHHHHh
Confidence            7777788888888887763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=93.44  E-value=0.37  Score=48.67  Aligned_cols=87  Identities=18%  Similarity=0.254  Sum_probs=11.0

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM  401 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel  401 (535)
                      +++.+..+++++|..+|.+....    +......+.+.+.++...++++|+++++++.+-+..       ..++..++.+
T Consensus        51 a~La~~~~~~~~A~~ay~~l~~~----~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~-------~~~l~~~l~~  119 (280)
T PF13429_consen   51 ADLAWSLGDYDEAIEAYEKLLAS----DKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGD-------PRYLLSALQL  119 (280)
T ss_dssp             ------------------------------------------------------------------------------H-
T ss_pred             ccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccc-------cchhhHHHHH
Confidence            33444444445555555544321    111233455555554445566666666655443211       1344455555


Q ss_pred             HHHhhhHHHHHHHHHHHH
Q psy11025        402 CVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       402 ~e~~~~y~~Aie~ye~~~  419 (535)
                      +...++++++.+++++..
T Consensus       120 ~~~~~~~~~~~~~l~~~~  137 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLE  137 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHH
Confidence            666666666666666643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=93.40  E-value=3  Score=48.32  Aligned_cols=148  Identities=16%  Similarity=0.122  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHH
Q psy11025        331 VAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD  409 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~  409 (535)
                      ..+++.++-++-.+-++-+++ +.++.-.|.+....+ .++|..+++.++++.-+.      .......|.++.+.++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~------~~a~~~~a~~L~~~~~~e  137 (694)
T PRK15179         65 VHKPAAALPELLDYVRRYPHT-ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS------SEAFILMLRGVKRQQGIE  137 (694)
T ss_pred             hcchHhhHHHHHHHHHhcccc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhccHH
Confidence            455555555554444444443 455666677777665 788888888888876544      223444566667778888


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhh
Q psy11025        410 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESE  489 (535)
Q Consensus       410 ~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~  489 (535)
                      +|...+++..+.--    .+.......+..+.++..++.  |..+|++...  .+|.+                      
T Consensus       138 eA~~~~~~~l~~~p----~~~~~~~~~a~~l~~~g~~~~--A~~~y~~~~~--~~p~~----------------------  187 (694)
T PRK15179        138 AGRAEIELYFSGGS----SSAREILLEAKSWDEIGQSEQ--ADACFERLSR--QHPEF----------------------  187 (694)
T ss_pred             HHHHHHHHHhhcCC----CCHHHHHHHHHHHHHhcchHH--HHHHHHHHHh--cCCCc----------------------
Confidence            88888877643211    111112223334556655555  8888887432  12111                      


Q ss_pred             hHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        490 HLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       490 ~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                           ....++-+.++.-+|+.-+|..+|++
T Consensus       188 -----~~~~~~~a~~l~~~G~~~~A~~~~~~  213 (694)
T PRK15179        188 -----ENGYVGWAQSLTRRGALWRARDVLQA  213 (694)
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                 11235556777777777777777766

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=93.38  E-value=9.6  Score=38.24  Aligned_cols=139  Identities=8%  Similarity=-0.071  Sum_probs=83.2

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKS-LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~-~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      .|..+.+.+++.+|...|++....|-.++. +.++....|.+ |+..+.++|+..|++.++.|-+..+...|.-.+..+-
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            344444568899999999999998876643 44444444444 4556799999999999999988876554433332221


Q ss_pred             HHHH--------------H-hhhHHHHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHhcCCHHHHHH
Q psy11025        400 RMCV--------------R-VKEFDKAADLIRQEIGYHQESEHLLAI-----------GRLAVALVLVQLARGDTVAAEK  453 (535)
Q Consensus       400 el~e--------------~-~~~y~~Aie~ye~~~~~~~a~e~~~~a-----------~rl~la~il~~L~~~D~vaA~~  453 (535)
                      .-+.              + ...-.+|++.|++..+.|=..++...+           ++--+...-.++..+..++|+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~  196 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN  196 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            0000              0 122457888888887776433221111           1111111122455778888877


Q ss_pred             HHHHhhh
Q psy11025        454 AFKEWGN  460 (535)
Q Consensus       454 ~~e~~~~  460 (535)
                      -++.+..
T Consensus       197 r~~~v~~  203 (243)
T PRK10866        197 RVEQMLR  203 (243)
T ss_pred             HHHHHHH
Confidence            7776443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=93.33  E-value=0.9  Score=45.82  Aligned_cols=126  Identities=20%  Similarity=0.234  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        319 DAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       319 D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      ..++.+|.+.+.+.++.+.+.++..  ..........|...|.++.+.+ +++|+++|++|+++.-....      ....
T Consensus       114 ~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------~~~~  185 (280)
T PF13429_consen  114 LSALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------ARNA  185 (280)
T ss_dssp             ----H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------HHHH
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHH
Confidence            3688889999999999999988663  1111234667888999999876 99999999999999877632      3444


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      .+-++...|++.++.++++...+.......+..    .++  .+.+..|+...|...|++.
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~----~la--~~~~~lg~~~~Al~~~~~~  240 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD----ALA--AAYLQLGRYEEALEYLEKA  240 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH----HHH--HHHHHHT-HHHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH----HHH--HHhcccccccccccccccc
Confidence            566777778999877777665444322211111    111  2333446666688888873

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=92.90  E-value=0.39  Score=37.18  Aligned_cols=56  Identities=13%  Similarity=0.144  Sum_probs=33.3

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11025        359 GAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG  420 (535)
Q Consensus       359 AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~  420 (535)
                      |-..++..++++|+.+|++++..+-.      -.+.+...|.++...|+|++|+.+|++..+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33344444567777777766665522      345566666666667777777777766643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=92.87  E-value=10  Score=44.61  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=44.6

Q ss_pred             HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        364 EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       364 ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      ...++++|..++.+|..+....+. .....++...|.+....|++.+|.+.+++....+.
T Consensus       585 ~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        585 EWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            345688999999999998775542 33345667788888888999999999988866543

>KOG3616|consensus

Probab=92.65  E-value=3.5  Score=47.22  Aligned_cols=85  Identities=13%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhC-CHHHHHHHHHH------HHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025        353 STVLEKGAKSLEEL-KSDAALTLYSR------AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  425 (535)
Q Consensus       353 A~~l~~AAk~~ek~-~~~eAie~y~k------Aaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~  425 (535)
                      +..|.+|+..|++. +++.|++||++      |+++-.-. =+..-.++-...+.-++..++|+-|+..|-++..+.-+.
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai  739 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI  739 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence            57888999999986 58999988764      33331111 012233344445556677888888888888877666666


Q ss_pred             hHHHHHHHHHHHH
Q psy11025        426 EHLLAIGRLAVAL  438 (535)
Q Consensus       426 e~~~~a~rl~la~  438 (535)
                      +.-..+-.|.-++
T Consensus       740 eaai~akew~kai  752 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAI  752 (1636)
T ss_pred             HHHhhhhhhhhhH
Confidence            5544444444433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=92.50  E-value=10  Score=39.90  Aligned_cols=135  Identities=19%  Similarity=0.249  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      +=+.-|..||-+++|-+.|....    +.+++|-.++.+-..+|.... ++.||+.-++=..+=... ..-.-|+++=..
T Consensus       112 qL~~Dym~aGl~DRAE~~f~~L~----de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCEL  186 (389)
T COG2956         112 QLGRDYMAAGLLDRAEDIFNQLV----DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCEL  186 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHh----cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHH
Confidence            45666777777777777776643    357888889999999998764 889987755433332222 223445555555


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCc
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPER  467 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f  467 (535)
                      |.-+....+.+.|+++++++.   ++....-.|   .+-.+-+.+..||+.+|.+.|+.+..  .|+.|
T Consensus       187 Aq~~~~~~~~d~A~~~l~kAl---qa~~~cvRA---si~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~y  247 (389)
T COG2956         187 AQQALASSDVDRARELLKKAL---QADKKCVRA---SIILGRVELAKGDYQKAVEALERVLE--QNPEY  247 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHHHH---hhCccceeh---hhhhhHHHHhccchHHHHHHHHHHHH--hChHH
Confidence            555555678888888887763   332222222   22223456778999889999988665  44444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=92.47  E-value=2.1  Score=40.01  Aligned_cols=67  Identities=16%  Similarity=0.164  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        353 STVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       353 A~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      +.++..-+..+.. .++++|+.+|++|+.+.....   .....+...|.++...|+|++|+.+|+++.+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  102 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELN  102 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4445555555544 569999999999998754322   234678889999999999999999999987654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=92.42  E-value=11  Score=36.44  Aligned_cols=133  Identities=13%  Similarity=0.018  Sum_probs=76.0

Q ss_pred             HHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----HH
Q psy11025        327 RAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRA-----AR  400 (535)
Q Consensus       327 kAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka-----Ae  400 (535)
                      +.|+|.+|...|.+...-|-.++. +.++....|.++-+ .+.++|+..|++=+..|-.......|.-.+..+     -.
T Consensus        17 ~~g~y~~Ai~~f~~l~~~~P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~   95 (203)
T PF13525_consen   17 QQGDYEEAIKLFEKLIDRYPNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG   95 (203)
T ss_dssp             HCT-HHHHHHHHHHHHHH-TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence            335688999999998877755543 45555666666654 569999999999999998887655442222111     11


Q ss_pred             H---HHHhhhHHHHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        401 M---CVRVKEFDKAADLIRQEIGYHQESEHLLAI-----------GRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       401 l---~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a-----------~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      +   ....+...+|+..|+...+.|-...+...+           ++--+.+.-..+..+..++|+.-|+.+..
T Consensus        96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~  169 (203)
T PF13525_consen   96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE  169 (203)
T ss_dssp             HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred             chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            1   122355678999999988777433221111           11112222346668888888877776433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=92.40  E-value=2  Score=38.53  Aligned_cols=95  Identities=15%  Similarity=0.077  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      +.|..|...|...+|...|.+|... .-+......++...+..+...+ +++|+.++++++.-|.+.+ ...+..++.  
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-~~~~l~~f~--   81 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-LNAALRVFL--   81 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHH--
Confidence            4566677777788888888888653 1234455678888899998876 9999999999988776543 344555553  


Q ss_pred             HHHHHHhhhHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQE  418 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~  418 (535)
                      |-.+...|++++|++.+...
T Consensus        82 Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            33455668888888887654

>KOG2003|consensus

Probab=92.35  E-value=2.4  Score=46.10  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~  421 (535)
                      .++|++||.+---+      ...-++++.++|.||+.+++..+||++|.++..+
T Consensus       540 ldeald~f~klh~i------l~nn~evl~qianiye~led~aqaie~~~q~~sl  587 (840)
T KOG2003|consen  540 LDEALDCFLKLHAI------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL  587 (840)
T ss_pred             HHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence            45555555443333      3445678888999999999999999998887543

>KOG0553|consensus

Probab=92.32  E-value=1.1  Score=46.19  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q psy11025        389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ--ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPE  466 (535)
Q Consensus       389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~--a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~  466 (535)
                      ..|-++..+-.+++. .++|++|++.|.++..+--  +.=+..+|      +..++|..++.  |++-.+.-  .+.||.
T Consensus        79 ~~AE~LK~eGN~~m~-~~~Y~eAv~kY~~AI~l~P~nAVyycNRA------AAy~~Lg~~~~--AVkDce~A--l~iDp~  147 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMK-NKDYQEAVDKYTEAIELDPTNAVYYCNRA------AAYSKLGEYED--AVKDCESA--LSIDPH  147 (304)
T ss_pred             HHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCcchHHHHHH------HHHHHhcchHH--HHHHHHHH--HhcChH
Confidence            344444444445554 4899999999999987652  23233333      24678877776  77776641  112222


Q ss_pred             ccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        467 RCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       467 f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      +                           .|.+...|+.+|+.|+++.|..+|++
T Consensus       148 y---------------------------skay~RLG~A~~~~gk~~~A~~aykK  174 (304)
T KOG0553|consen  148 Y---------------------------SKAYGRLGLAYLALGKYEEAIEAYKK  174 (304)
T ss_pred             H---------------------------HHHHHHHHHHHHccCcHHHHHHHHHh
Confidence            1                           33446679999999999999999877

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=92.26  E-value=1.7  Score=41.02  Aligned_cols=81  Identities=23%  Similarity=0.073  Sum_probs=54.2

Q ss_pred             HhhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccccccc
Q psy11025        404 RVKEFDKAADLIRQEIGYH-QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKA  482 (535)
Q Consensus       404 ~~~~y~~Aie~ye~~~~~~-~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~  482 (535)
                      ..|+|++|..+|+-...+= ....++..       ..+|+-..++...|+.+|..-..  .+                ..
T Consensus        47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~g-------LG~~~Q~~g~~~~AI~aY~~A~~--L~----------------~d  101 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIYDAWSFDYWFR-------LGECCQAQKHWGEAIYAYGRAAQ--IK----------------ID  101 (157)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHh--cC----------------CC
Confidence            3589999999997764331 11222222       23566667888889999986222  11                11


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        483 GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       483 ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      .           .+..+.+|+|+|..||...|+++|+.
T Consensus       102 d-----------p~~~~~ag~c~L~lG~~~~A~~aF~~  128 (157)
T PRK15363        102 A-----------PQAPWAAAECYLACDNVCYAIKALKA  128 (157)
T ss_pred             C-----------chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1           13347789999999999999999997

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=91.73  E-value=4.5  Score=35.50  Aligned_cols=100  Identities=19%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-h
Q psy11025        348 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-E  426 (535)
Q Consensus       348 ~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e  426 (535)
                      .+..+.-.+..+.-.+...+.++|.++|++++.+....      ...+...|.++...++|.+|+.+|++..+..... .
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~   86 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR   86 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence            34433333444444455556999999999998875433      3566788889988999999999999876654322 2


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .+...+       .|+...|+...|...|++.-.
T Consensus        87 ~~~~la-------~~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        87 PYFHAA-------ECLLALGEPESALKALDLAIE  113 (135)
T ss_pred             HHHHHH-------HHHHHcCCHHHHHHHHHHHHH
Confidence            222222       456667888889899887444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=91.60  E-value=3.1  Score=48.16  Aligned_cols=123  Identities=10%  Similarity=-0.010  Sum_probs=70.3

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      |++-.+.+.+++|...|..+.+.   .|+.++ +...-+.++.+.+ +++|+..++++...-     ++.+. .+...|.
T Consensus        93 a~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~-a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-----p~~~~-~~~~~a~  162 (694)
T PRK15179         93 ARALEAAHRSDEGLAVWRGIHQR---FPDSSE-AFILMLRGVKRQQGIEAGRAEIELYFSGG-----SSSAR-EILLEAK  162 (694)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHhh---CCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHhhcC-----CCCHH-HHHHHHH
Confidence            34444444567777777776554   344322 2334455555544 888888888776543     23333 3334455


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        401 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .+.+.|+|++|+++|+++.... ..     .....++...+....|+..+|..+|++...
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~-p~-----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQH-PE-----FENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcC-CC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666788888888888886511 11     011112222345556777778888887443

>KOG2076|consensus

Probab=91.58  E-value=2.6  Score=49.07  Aligned_cols=79  Identities=20%  Similarity=0.218  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH--------------Hhc
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADV--------------AHG  384 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAael--------------y~~  384 (535)
                      -=++.|++-|+..++..++..||.+-.++++    ..++.+...++.+ ..+|.-||.+|+.+              |..
T Consensus       178 tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e----~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~  253 (895)
T KOG2076|consen  178 TLGEIYEQRGDIEKALNFWLLAAHLNPKDYE----LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK  253 (895)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            4567888888888888888888877655543    4677777777765 88888888888764              555


Q ss_pred             CCcHHHHHHHHHHHHHHH
Q psy11025        385 EDNYKQAAEYISRAARMC  402 (535)
Q Consensus       385 egr~~~Aa~~l~kaAel~  402 (535)
                      .|....|++++.++.++.
T Consensus       254 ~G~~~~Am~~f~~l~~~~  271 (895)
T KOG2076|consen  254 TGDLKRAMETFLQLLQLD  271 (895)
T ss_pred             hChHHHHHHHHHHHHhhC
Confidence            566666666666666544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.84  E-value=12  Score=36.66  Aligned_cols=138  Identities=22%  Similarity=0.244  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q psy11025        351 AASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL  429 (535)
Q Consensus       351 ~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~e-gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~  429 (535)
                      .|+..|.++.+......|+ .+   . +++-|... |+...|.-....+|+-++..+++.+|...++.... ....+.+.
T Consensus        52 ~AS~~Y~~~i~~~~ak~~~-~~---~-~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~-~t~De~lk  125 (207)
T COG2976          52 EASAQYQNAIKAVQAKKPK-SI---A-AAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA-QTKDENLK  125 (207)
T ss_pred             HHHHHHHHHHHHHhcCCch-hH---H-HHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-cchhHHHH
Confidence            4556666666666544441 11   1 22223333 47788888888899989889999999988876632 22344566


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Q psy11025        430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARG  509 (535)
Q Consensus       430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~g  509 (535)
                      ...++-++-+++++..+|.  |-+.+..+.+                     .+       |..+.- .+. |=++|+.|
T Consensus       126 ~l~~lRLArvq~q~~k~D~--AL~~L~t~~~---------------------~~-------w~~~~~-elr-GDill~kg  173 (207)
T COG2976         126 ALAALRLARVQLQQKKADA--ALKTLDTIKE---------------------ES-------WAAIVA-ELR-GDILLAKG  173 (207)
T ss_pred             HHHHHHHHHHHHHhhhHHH--HHHHHhcccc---------------------cc-------HHHHHH-HHh-hhHHHHcC
Confidence            6667777777888888777  7777764211                     11       111111 133 67788999


Q ss_pred             CHHHHHHHHHH-hcCCCC
Q psy11025        510 DTVAAEKAFKE-WGNCCE  526 (535)
Q Consensus       510 D~V~A~~a~~~-~~~F~~  526 (535)
                      |.++|+.+|+. +..+..
T Consensus       174 ~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         174 DKQEARAAYEKALESDAS  191 (207)
T ss_pred             chHHHHHHHHHHHHccCC
Confidence            99999999987 444433

>KOG2047|consensus

Probab=90.76  E-value=4.1  Score=46.14  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---h
Q psy11025        331 VAHGEDNYKQAAEYISRNREAASTVLEKGAKSL-EELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR---V  405 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~-ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~---~  405 (535)
                      +.+|.+.|++|-+   .+|-..++.+.-+.--+ |+.+ ...|+..|++|+.-.....+.++=+-|.+|+|++|--   .
T Consensus       566 lEraRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR  642 (835)
T KOG2047|consen  566 LERARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR  642 (835)
T ss_pred             HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence            5678888888765   45555555555444444 4445 6789999999999999999999999999999999942   4


Q ss_pred             hhHHHHHHHHHH
Q psy11025        406 KEFDKAADLIRQ  417 (535)
Q Consensus       406 ~~y~~Aie~ye~  417 (535)
                      +-|++||+.+-.
T Consensus       643 ~iYekaIe~Lp~  654 (835)
T KOG2047|consen  643 EIYEKAIESLPD  654 (835)
T ss_pred             HHHHHHHHhCCh
Confidence            789999887643

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.67  E-value=0.57  Score=32.50  Aligned_cols=28  Identities=14%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        394 YISRAARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       394 ~l~kaAel~e~~~~y~~Aie~ye~~~~~  421 (535)
                      ++..+|.++.+.|+|++|+++|+++..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3678899999999999999999996533

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=90.64  E-value=5.3  Score=36.01  Aligned_cols=90  Identities=17%  Similarity=0.279  Sum_probs=55.0

Q ss_pred             hCCHHHHHHHHHHHHHHHhcCC---------------cH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q psy11025        365 ELKSDAALTLYSRAADVAHGED---------------NY-KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL  428 (535)
Q Consensus       365 k~~~~eAie~y~kAaely~~eg---------------r~-~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~  428 (535)
                      ..++..+++.|.+|+.+|.+.=               +. ..-..++.+.++++...++|++|+.++++.....--.+. 
T Consensus        19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~-   97 (146)
T PF03704_consen   19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEE-   97 (146)
T ss_dssp             TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH-
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-
Confidence            3457777777777777765431               01 234466677777777789999999999887655433332 


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        429 LAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       429 ~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                        +.+.   .+.++...|+...|.+.|+++..
T Consensus        98 --~~~~---lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   98 --AYRL---LMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             --HHHH---HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             --HHHH---HHHHHHHCcCHHHHHHHHHHHHH
Confidence              2222   12456678999999999987543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2002|consensus

Probab=90.36  E-value=5.2  Score=47.16  Aligned_cols=160  Identities=21%  Similarity=0.179  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----hh--
Q psy11025        353 STVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE----SE--  426 (535)
Q Consensus       353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a----~e--  426 (535)
                      ++++..-|.+++..++-.++.+|.+|.++++..++. --.+.+..+|-+.-..|.+++|-+.|.++......    .+  
T Consensus       414 ~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~  492 (1018)
T KOG2002|consen  414 SEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK  492 (1018)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence            446777788888899888899999999999999987 88899999999999999999999999998766332    11  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccc---ccccccc-------hhhhhhhHHHHHH
Q psy11025        427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFS---FSLGKAG-------YHQESEHLLAIGR  496 (535)
Q Consensus       427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l---~~L~l~a-------y~~~~~~~~~~~~  496 (535)
                      .....-+.-+|.++=+|  ++...|..+|..+-..++++.-|--|-..+.   .++ -.+       ......++.+...
T Consensus       493 ~~~lt~~YNlarl~E~l--~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~-~ea~~~lk~~l~~d~~np~arsl  569 (1018)
T KOG2002|consen  493 STNLTLKYNLARLLEEL--HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNL-YEASLLLKDALNIDSSNPNARSL  569 (1018)
T ss_pred             cchhHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCc-HHHHHHHHHHHhcccCCcHHHHH
Confidence            11111222233333344  4555588999887665544322211111000   000 000       0000111222222


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        497 LAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       497 l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                          .|-|||...+.+-|+..++.
T Consensus       570 ----~G~~~l~k~~~~~a~k~f~~  589 (1018)
T KOG2002|consen  570 ----LGNLHLKKSEWKPAKKKFET  589 (1018)
T ss_pred             ----HHHHHHhhhhhcccccHHHH
Confidence                26799999999999997776

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.12  E-value=10  Score=37.48  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH-------hcCCcHHHHHHHHHHHH
Q psy11025        331 VAHGEDNYKQAAEYISR---NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVA-------HGEDNYKQAAEYISRAA  399 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~---~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely-------~~egr~~~Aa~~l~kaA  399 (535)
                      +.+|...|.-|.-|+.-   .+..-|..+.+.|=+|...+ .+....++.+|.+.|       ...+....-..++==+|
T Consensus        93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig  172 (214)
T PF09986_consen   93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIG  172 (214)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Confidence            67899999999999853   23346788888888887643 444444555555443       22111223345666789


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQES  425 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~  425 (535)
                      +|.-+.|++++|+.+|.++.......
T Consensus       173 eL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  173 ELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999886544443

>KOG0548|consensus

Probab=89.94  E-value=12  Score=41.63  Aligned_cols=24  Identities=17%  Similarity=-0.025  Sum_probs=20.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        497 LAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       497 l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      .++..+.|+-++.++..|..+|++
T Consensus       428 gy~RKg~al~~mk~ydkAleay~e  451 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQE  451 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778999999999999999876

>KOG0547|consensus

Probab=89.75  E-value=10  Score=41.86  Aligned_cols=20  Identities=15%  Similarity=0.287  Sum_probs=11.9

Q ss_pred             HHhhhHHHHHHHHHHHHHHH
Q psy11025        403 VRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       403 e~~~~y~~Aie~ye~~~~~~  422 (535)
                      ++.++.++||++||+.+.+-
T Consensus       548 lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  548 LQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             HHHhhHHHHHHHHHHHHHHH
Confidence            34566666666666665443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.41  E-value=2  Score=44.30  Aligned_cols=127  Identities=17%  Similarity=0.194  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------------HHHH----hhhHHHHHHHHHHHH
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR------------MCVR----VKEFDKAADLIRQEI  419 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe------------l~e~----~~~y~~Aie~ye~~~  419 (535)
                      ++.|-+++.+.   .-+++.--++.+|...||++.|.+.++++-+            -+..    .+.|.+|.-+|++..
T Consensus       118 ~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~  194 (290)
T PF04733_consen  118 YEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELS  194 (290)
T ss_dssp             HHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            44444444443   2234445566777777777777777766532            1111    347999999999987


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHH
Q psy11025        420 GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAV  499 (535)
Q Consensus       420 ~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l  499 (535)
                      +.|...      ..+...+.+|++..|+...|...+++--                         ...-.+++..    .
T Consensus       195 ~~~~~t------~~~lng~A~~~l~~~~~~eAe~~L~~al-------------------------~~~~~~~d~L----a  239 (290)
T PF04733_consen  195 DKFGST------PKLLNGLAVCHLQLGHYEEAEELLEEAL-------------------------EKDPNDPDTL----A  239 (290)
T ss_dssp             CCS--S------HHHHHHHHHHHHHCT-HHHHHHHHHHHC-------------------------CC-CCHHHHH----H
T ss_pred             hccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------------HhccCCHHHH----H
Confidence            665432      2233344578999999999999987510                         0011123332    4


Q ss_pred             HHHHHHhccCCH-HHHHHHHHH
Q psy11025        500 ALVLVQLARGDT-VAAEKAFKE  520 (535)
Q Consensus       500 ~a~lc~L~~gD~-V~A~~a~~~  520 (535)
                      ..++|.+..|+. -.+++.++.
T Consensus       240 Nliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  240 NLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHH
Confidence            458888888888 456666655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=89.30  E-value=1.5  Score=34.14  Aligned_cols=58  Identities=12%  Similarity=0.158  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL--KSDAALTLYSRAADV  381 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~--~~~eAie~y~kAael  381 (535)
                      .-+.+|.+.+++.+|..+|.+|..+.   ++. +.++..-+.++...  ++++|+++|++|+++
T Consensus         8 ~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    8 NLGQIYFQQGDYEEAIEYFEKAIELD---PNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHS---TTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC---CCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            34566666777889999999988763   333 33566667777765  388999999998875

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=89.27  E-value=1.5  Score=33.97  Aligned_cols=56  Identities=18%  Similarity=0.254  Sum_probs=41.3

Q ss_pred             HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        363 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       363 ~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      ++..++++|+++|+++...+-+.      .+.....|.++.+.|+|++|.+++++.......
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            34456889999999998887664      345557888888889999999999887554433

...

>KOG1125|consensus

Probab=88.64  E-value=13  Score=41.56  Aligned_cols=43  Identities=16%  Similarity=0.119  Sum_probs=24.9

Q ss_pred             HHhcCCHH-HHHHHHHHhhhccCCCCccccccccccccccccchhh
Q psy11025        442 QLARGDTV-AAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQ  486 (535)
Q Consensus       442 ~L~~~D~v-aA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~  486 (535)
                      .|++++.. .|+.+|.+-  ...-|+|...|..+...-+++.+|.+
T Consensus       473 tLAN~~~s~EAIsAY~rA--LqLqP~yVR~RyNlgIS~mNlG~ykE  516 (579)
T KOG1125|consen  473 TLANGNRSEEAISAYNRA--LQLQPGYVRVRYNLGISCMNLGAYKE  516 (579)
T ss_pred             HhcCCcccHHHHHHHHHH--HhcCCCeeeeehhhhhhhhhhhhHHH
Confidence            34555542 277777652  22457787788777665555555543

>KOG1126|consensus

Probab=88.40  E-value=3.7  Score=46.41  Aligned_cols=49  Identities=14%  Similarity=0.184  Sum_probs=30.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy11025        401 MCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFK  456 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e  456 (535)
                      ++-..++|.+|...+|+.-++.-. .-.+...++.+     .++...|.  |..-|-
T Consensus       566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~-----k~~~~~~~--Al~~f~  615 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIY-----KRLGNTDL--ALLHFS  615 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH-----HHHccchH--HHHhhH
Confidence            444578999999999988666532 23344444443     35666666  655554

>KOG2076|consensus

Probab=88.25  E-value=1.5  Score=51.04  Aligned_cols=89  Identities=13%  Similarity=0.088  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      +.+++|...+.+.+|.+.|....+--.-.   -+-.+.+-|.||...+ .++|+++|+++..+--..-      +..-.+
T Consensus       419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~---~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~------D~Ri~L  489 (895)
T KOG2076|consen  419 DLADALTNIGKYKEALRLLSPITNREGYQ---NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL------DARITL  489 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHhcCcccc---chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch------hhhhhH
Confidence            55556666666677777666553321111   1457888899999876 8999999999998854442      345678


Q ss_pred             HHHHHHhhhHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQ  417 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~  417 (535)
                      +.|+.+.|+.++|.++++.
T Consensus       490 asl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  490 ASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             HHHHHhcCCHHHHHHHHhc
Confidence            8899999999999999888

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=88.14  E-value=4.1  Score=39.48  Aligned_cols=45  Identities=11%  Similarity=0.126  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11025        369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       369 ~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~  419 (535)
                      ++|.++|.+|...--...      ..+...|-.+...|+|++|+..|++..
T Consensus       127 ~~A~~~l~~al~~dP~~~------~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        127 PQTREMIDKALALDANEV------TALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445555555544433331      123333333444455555555555543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=88.13  E-value=6.9  Score=37.77  Aligned_cols=19  Identities=16%  Similarity=0.170  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHHHHHHHHH
Q psy11025        486 QESEHLLAIGRLAVALVLV  504 (535)
Q Consensus       486 ~~~~~~~~~~~l~l~a~lc  504 (535)
                      ..+..|++.|...|..||+
T Consensus       161 ~sd~~ydv~gwvil~~giv  179 (186)
T PF06552_consen  161 SSDFKYDVFGWVILAVGIV  179 (186)
T ss_dssp             -------------------
T ss_pred             ccchhhhhcchHHHHHHHH
Confidence            4466799999998888776

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.87  E-value=2.6  Score=42.95  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025        318 PDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSL-EELKSDAALTLYSRAADVAHGEDNYKQAAEYIS  396 (535)
Q Consensus       318 ~D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~-ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~  396 (535)
                      |+.|-++|.. +.+..|...|..=..-|=++.- +++++.=-++++ .+.+.++|...|..++.-|-..   ..|-+.+.
T Consensus       145 Y~~A~~~~ks-gdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdall  219 (262)
T COG1729         145 YNAALDLYKS-GDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDALL  219 (262)
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHHH
Confidence            3344444443 6677787777765555533322 344444445544 5567999999999988866555   66889999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQES  425 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~  425 (535)
                      |+|.+..+.++-++|+.+|+++.+.|=..
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999998777544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=87.54  E-value=17  Score=38.87  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=20.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        497 LAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       497 l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      +.+..|-+++..++...|+..|+.
T Consensus       330 l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        330 LWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH
Confidence            346778899999999999999998

>PRK11189 lipoprotein NlpI; Provisional

Probab=87.54  E-value=11  Score=38.69  Aligned_cols=99  Identities=13%  Similarity=0.083  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-h
Q psy11025        349 REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-E  426 (535)
Q Consensus       349 ~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e  426 (535)
                      +..-+..|..-+.+|... +.++|+..|.+|+++.-..      ...+...|.++...|+|++|++.|+++.++.-.. .
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~  133 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  133 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            333345566667777665 4899999999999985443      3567788889999999999999999987654322 1


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .+.+.|       ++....|+...|.+.|+++-.
T Consensus       134 a~~~lg-------~~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189        134 AYLNRG-------IALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HHHHHH-------HHHHHCCCHHHHHHHHHHHHH
Confidence            222222       444556777779999988554

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=87.33  E-value=24  Score=35.78  Aligned_cols=145  Identities=12%  Similarity=0.028  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhcC
Q psy11025        316 LKPDAALTLYSRAAD-------VAHGEDNYKQAAEYISRNREA-ASTVLEKGAKSLEELKS--DAALTLYSRAADVAHGE  385 (535)
Q Consensus       316 ~K~D~AA~lYekAA~-------~~eAa~af~kAA~~y~~~~~~-AA~~l~~AAk~~ek~~~--~eAie~y~kAaely~~e  385 (535)
                      -|+++|.++..+.|.       +.-|++.-.--.++|.+.... --....+.++++....+  .+-..+..+|+.+-...
T Consensus         4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~   83 (260)
T PF04190_consen    4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFG   83 (260)
T ss_dssp             T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccC
Confidence            578999999888776       445777777777788764322 12234566666665432  24677888888888333


Q ss_pred             CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HH---------HHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy11025        386 DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG--YH---------QESEHLLAIGRLAVALVLVQLARGDTVAAEKA  454 (535)
Q Consensus       386 gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~--~~---------~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~  454 (535)
                      +...=-.+...-+|+++.+.++|.+|-..|-.-.+  .+         ...+......-...-+|+..|+.+....|...
T Consensus        84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~  163 (260)
T PF04190_consen   84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANEL  163 (260)
T ss_dssp             S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHH
Confidence            33333458888899999998999988876633211  11         11112223344444467899999999889998


Q ss_pred             HHHhhh
Q psy11025        455 FKEWGN  460 (535)
Q Consensus       455 ~e~~~~  460 (535)
                      +..|-.
T Consensus       164 ~~~f~~  169 (260)
T PF04190_consen  164 FDTFTS  169 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

; PDB: 3LKU_E 2WPV_G.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=87.23  E-value=12  Score=36.17  Aligned_cols=93  Identities=13%  Similarity=0.119  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHhhh--HHHHHHHHHHHHHHHHHh-hHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CVRVKE--FDKAADLIRQEIGYHQES-EHLL  429 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel-~e~~~~--y~~Aie~ye~~~~~~~a~-e~~~  429 (535)
                      .+..-+.+|... ++++|+.+|.+|..+.-..      .+.+...|.+ +...++  +.+|.++++++.+..-.. ..+.
T Consensus        75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~  148 (198)
T PRK10370         75 QWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM  148 (198)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence            466667777665 4999999999999987655      3455566664 456566  699999999986554332 2222


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      ..+       .+.+..||...|+..|++.-.
T Consensus       149 ~LA-------~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        149 LLA-------SDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHH-------HHHHHcCCHHHHHHHHHHHHh
Confidence            222       445667888889999998443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=86.92  E-value=10  Score=44.46  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      ..|.+|.+.+++.+|..+|.++....-.++.    ++...+.++.. .++++|+.++++++..+-...     .  +...
T Consensus        54 ~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~-----~--~~~l  122 (765)
T PRK10049         54 AVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILTLADAGQYDEALVKAKQLVSGAPDKA-----N--LLAL  122 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H--HHHH
Confidence            5677777888888888888887765322322    23344555544 459999999999998855442     2  4456


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      |.++...+++++|+..|+++.+..-
T Consensus       123 a~~l~~~g~~~~Al~~l~~al~~~P  147 (765)
T PRK10049        123 AYVYKRAGRHWDELRAMTQALPRAP  147 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            8888888999999999999876653

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.61  E-value=57  Score=37.18  Aligned_cols=172  Identities=13%  Similarity=0.117  Sum_probs=96.9

Q ss_pred             HHhchHHHHHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-HHH
Q psy11025        327 RAADVAHGEDNYKQAAEYISRNR----EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRA-ARM  401 (535)
Q Consensus       327 kAA~~~eAa~af~kAA~~y~~~~----~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka-Ael  401 (535)
                      .--|.++|-....||...-.+..    ...+.++-  ++++++.++..|.....++++.+...+. ..-.-++.=+ +.+
T Consensus        72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll--~~i~~~~~~~~a~~~l~~~I~~~~~~~~-~~w~~~frll~~~l  148 (608)
T PF10345_consen   72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLL--ARIYFKTNPKAALKNLDKAIEDSETYGH-SAWYYAFRLLKIQL  148 (608)
T ss_pred             HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHH
Confidence            33357788888888876654421    12343333  8999999988899999999999998652 2222222222 333


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccc
Q psy11025        402 CVRVKEFDKAADLIRQEIGYHQESE--HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSL  479 (535)
Q Consensus       402 ~e~~~~y~~Aie~ye~~~~~~~a~e--~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L  479 (535)
                      ....+++..|++.++.....-...+  .....+.+  ...+++|..+....+.+.++..........+..+.        
T Consensus       149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l--~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~--------  218 (608)
T PF10345_consen  149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL--SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV--------  218 (608)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH--HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC--------
Confidence            3333799999999999887665322  22222322  23355666553433444444321100110000000        


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        480 GKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       480 ~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                             ...+.. +-. .+--+.|.|+.||+-.+...+..
T Consensus       219 -------~~~qL~-~~~-lll~l~~~l~~~~~~~~~~~L~~  250 (608)
T PF10345_consen  219 -------HIPQLK-ALF-LLLDLCCSLQQGDVKNSKQKLKQ  250 (608)
T ss_pred             -------CcHHHH-HHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence                   001112 112 24448899999998888888765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0543|consensus

Probab=86.46  E-value=10  Score=40.84  Aligned_cols=61  Identities=18%  Similarity=0.217  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .|+.++|-.+.+++.|..|++.+.++...=... ..+..-|+.       +|..+|+..|+..|++...
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A-------~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQA-------LLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH-------HHhhccHHHHHHHHHHHHH
Confidence            456666666777778888887777765443221 223333433       4445666667777777554

>KOG0687|consensus

Probab=86.39  E-value=24  Score=37.17  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q psy11025        389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE----HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA  464 (535)
Q Consensus       389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e----~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~  464 (535)
                      ....+...+.|+.|++.++-+.|.+.+.+.-+.--+.+    ...-..|+    ++..+   |..-..+.+++       
T Consensus       101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRl----glfy~---D~~lV~~~iek-------  166 (393)
T KOG0687|consen  101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRL----GLFYL---DHDLVTESIEK-------  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHH----HHhhc---cHHHHHHHHHH-------
Confidence            56677888999999999999999999887654443332    23322222    22232   33223344443       


Q ss_pred             CCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-hcCCCCch
Q psy11025        465 PERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE-WGNCCEAP  528 (535)
Q Consensus       465 ~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~-~~~F~~s~  528 (535)
                                      .+.+.++-++|+-.+++=.-.||-+++.-|.-+|..-|-+ +|+|..++
T Consensus       167 ----------------ak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~E  215 (393)
T KOG0687|consen  167 ----------------AKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYE  215 (393)
T ss_pred             ----------------HHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccccee
Confidence                            3344455667888888877789999999999999999888 59998764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=86.32  E-value=1.5  Score=33.82  Aligned_cols=57  Identities=18%  Similarity=0.175  Sum_probs=41.1

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVA  382 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely  382 (535)
                      +..|.+.+++.+|..+|.++...+   |+ ...++..-+.++... ++++|+.+|+++++..
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~---P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD---PD-NPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS---TT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            566777788888888888876544   33 344566667777665 4999999999998764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.19  E-value=19  Score=35.24  Aligned_cols=93  Identities=23%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11025        355 VLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL  434 (535)
Q Consensus       355 ~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl  434 (535)
                      +|+-|-..++..+.++|..-++.+...-.++   .--+=.-.++|++..+.+.|++|..++....+.-=..-....-|.+
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDi  168 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhH
Confidence            3444445556667899998888776554443   2222334578888999999999999997764321111122223333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~  457 (535)
                             .+..||.++|+..|++
T Consensus       169 -------ll~kg~k~~Ar~ay~k  184 (207)
T COG2976         169 -------LLAKGDKQEARAAYEK  184 (207)
T ss_pred             -------HHHcCchHHHHHHHHH
Confidence                   4567999999999987

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.81  E-value=3.8  Score=41.78  Aligned_cols=96  Identities=10%  Similarity=0.075  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----hhHHHH
Q psy11025        355 VLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE----SEHLLA  430 (535)
Q Consensus       355 ~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a----~e~~~~  430 (535)
                      .|.-|.++|+..+..+|.+.|..=++-|-..-.   +.+.+==.++.+-..|+|++|+.+|....+-|-.    -+.+.+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            577777788887888899889888888877743   3344445567777789999999999998775532    234444


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .+     .++..|.+-|  .|...|+++..
T Consensus       221 lg-----~~~~~l~~~d--~A~atl~qv~k  243 (262)
T COG1729         221 LG-----VSLGRLGNTD--EACATLQQVIK  243 (262)
T ss_pred             HH-----HHHHHhcCHH--HHHHHHHHHHH
Confidence            44     3355555444  49899988655

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=85.56  E-value=15  Score=31.04  Aligned_cols=70  Identities=19%  Similarity=0.171  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYK---QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES  425 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~---~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~  425 (535)
                      |..-.+.+...|..+|++.+.+..+.....+...   .-.-.+...|.+....|.+++|++.++++.++....
T Consensus         2 ~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    2 YLRYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4555677778889999999999999987776544   444557778888888999999999999998877654

>KOG1173|consensus

Probab=85.55  E-value=17  Score=40.82  Aligned_cols=134  Identities=16%  Similarity=0.176  Sum_probs=82.2

Q ss_pred             CHHHHHHHHHHHhc---------------------hHHHHHHHHHHHHHHHhCH----------------HHHHHHHHHH
Q psy11025        317 KPDAALTLYSRAAD---------------------VAHGEDNYKQAAEYISRNR----------------EAASTVLEKG  359 (535)
Q Consensus       317 K~D~AA~lYekAA~---------------------~~eAa~af~kAA~~y~~~~----------------~~AA~~l~~A  359 (535)
                      |+++|-.+|-||-.                     .+.|..||-.|+.....+.                .-|-+.|.+|
T Consensus       327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A  406 (611)
T KOG1173|consen  327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA  406 (611)
T ss_pred             CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence            77899999999875                     2467777777777654421                1133333333


Q ss_pred             HHHHH---------------hCCHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        360 AKSLE---------------ELKSDAALTLYSRAADVAHGEDNYK-QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       360 Ak~~e---------------k~~~~eAie~y~kAaely~~egr~~-~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      -.+.-               .....+|+.+++.|.+....-+... .=.-.+..+|.++.+++.|++||..|+++..+..
T Consensus       407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            32221               1235677777777775543333211 2344577888899999999999999999876654


Q ss_pred             Hh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        424 ES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       424 a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      .. ..+...|       .|++..|....|+..|.+
T Consensus       487 k~~~~~asig-------~iy~llgnld~Aid~fhK  514 (611)
T KOG1173|consen  487 KDASTHASIG-------YIYHLLGNLDKAIDHFHK  514 (611)
T ss_pred             CchhHHHHHH-------HHHHHhcChHHHHHHHHH
Confidence            32 2333333       445455555558888876

>KOG0547|consensus

Probab=85.06  E-value=14  Score=40.90  Aligned_cols=82  Identities=15%  Similarity=0.186  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHH
Q psy11025        332 AHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA  411 (535)
Q Consensus       332 ~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~A  411 (535)
                      .+|..-|.+|..+   .|..+--....+.-.|+....++++..|+.+..-|-      ...+++.=.|+++...++|.+|
T Consensus       411 e~A~aDF~Kai~L---~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP------~~~Evy~~fAeiLtDqqqFd~A  481 (606)
T KOG0547|consen  411 EEAIADFQKAISL---DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP------NCPEVYNLFAEILTDQQQFDKA  481 (606)
T ss_pred             HHHHHHHHHHhhc---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCchHHHHHHHHHhhHHhHHHH
Confidence            3444444444332   233333333344444444445555555555554332      3345666667777777888888


Q ss_pred             HHHHHHHHHHH
Q psy11025        412 ADLIRQEIGYH  422 (535)
Q Consensus       412 ie~ye~~~~~~  422 (535)
                      ++.|..+.++-
T Consensus       482 ~k~YD~ai~LE  492 (606)
T KOG0547|consen  482 VKQYDKAIELE  492 (606)
T ss_pred             HHHHHHHHhhc
Confidence            88888877653

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.83  E-value=9.5  Score=31.54  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHhhhHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE-----DNYKQAAEYISRAARMCVRVKEFD  409 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~e-----gr~~~Aa~~l~kaAel~e~~~~y~  409 (535)
                      |.....+|.++=+..+.++|+.+|.+|+++|..-     -....-.....|+.+.+.+.+...
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk   68 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALH   68 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555567889999999999987652     222333334666666666554443

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG0543|consensus

Probab=84.60  E-value=12  Score=40.33  Aligned_cols=22  Identities=23%  Similarity=0.152  Sum_probs=18.3

Q ss_pred             HHHHHHHhccCCHHHHHHHHHH
Q psy11025        499 VALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       499 l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      +.-|-++|..||+-.|+..|++
T Consensus       295 yRrG~A~l~~~e~~~A~~df~k  316 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQK  316 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHH
Confidence            6668888888898888888876

>PRK14574 hmsH outer membrane protein; Provisional

Probab=84.42  E-value=21  Score=42.35  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             HHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q psy11025        327 RAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV  405 (535)
Q Consensus       327 kAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~  405 (535)
                      +.|++..|.+.|.++-...   |..++..+ ..+.++-. .+.++|+.++++|+   ..+   ......+.-+|.++...
T Consensus        46 r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~---~p~---n~~~~~llalA~ly~~~  115 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ---SSM---NISSRGLASAARAYRNE  115 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc---cCC---CCCHHHHHHHHHHHHHc
Confidence            3477888888888876554   33221112 33344433 34789999999998   111   12223444457788888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        406 KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       406 ~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ++|.+|+++|+++.+..-.......    .+  +++.+..+....|...+++
T Consensus       116 gdyd~Aiely~kaL~~dP~n~~~l~----gL--a~~y~~~~q~~eAl~~l~~  161 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPTNPDLIS----GM--IMTQADAGRGGVVLKQATE  161 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHH----HH--HHHHhhcCCHHHHHHHHHH
Confidence            9999999999998766543321111    11  2344445566557777765

>PRK15331 chaperone protein SicA; Provisional

Probab=84.19  E-value=12  Score=35.61  Aligned_cols=98  Identities=17%  Similarity=0.204  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHH
Q psy11025        350 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHL  428 (535)
Q Consensus       350 ~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~  428 (535)
                      ++=-..|..|-+.|...+.++|..+|.--+-+=...      .+++.-.|-.+-..+.|++|++.|..+.-+-... ..+
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            333456888888999888999998888655542222      2366777778878899999999998876543211 113


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        429 LAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       429 ~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .-++       .|+|..++...|..+|+.+..
T Consensus       109 f~ag-------qC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        109 FFTG-------QCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             chHH-------HHHHHhCCHHHHHHHHHHHHh
Confidence            3333       778889999999999987544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=83.32  E-value=13  Score=39.91  Aligned_cols=116  Identities=16%  Similarity=0.096  Sum_probs=70.2

Q ss_pred             hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKS-LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~-~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      |+|.+|.++..++.+.    .+...-.|.-+|.+ ....+++.|.++|.+|.+...+.   ..+..  ...++++...++
T Consensus        98 Gd~~~A~k~l~~~~~~----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~---~~~~~--l~~a~l~l~~g~  168 (398)
T PRK10747         98 GDYQQVEKLMTRNADH----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADND---QLPVE--ITRVRIQLARNE  168 (398)
T ss_pred             CCHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc---hHHHH--HHHHHHHHHCCC
Confidence            5577777666655442    11233446677777 66667999999999998644333   22222  234888888999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        408 FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       408 y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      |++|.+.+++..+..-...   .+.++.   ..+++..||...|...+....
T Consensus       169 ~~~Al~~l~~~~~~~P~~~---~al~ll---~~~~~~~gdw~~a~~~l~~l~  214 (398)
T PRK10747        169 NHAARHGVDKLLEVAPRHP---EVLRLA---EQAYIRTGAWSSLLDILPSMA  214 (398)
T ss_pred             HHHHHHHHHHHHhcCCCCH---HHHHHH---HHHHHHHHhHHHHHHHHHHHH
Confidence            9999999988755442221   111111   123445577777776666544

>PLN03218 maturation of RBCL 1; Provisional

Probab=83.11  E-value=67  Score=39.33  Aligned_cols=41  Identities=10%  Similarity=0.223  Sum_probs=23.5

Q ss_pred             HHHHhcCCcHHHHHHHHHHHH-----------------HHHHHhhhHHHHHHHHHHHH
Q psy11025        379 ADVAHGEDNYKQAAEYISRAA-----------------RMCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       379 aely~~egr~~~Aa~~l~kaA-----------------el~e~~~~y~~Aie~ye~~~  419 (535)
                      +..|...|+...|.+.+.++-                 ..|.+.|++++|.++|+...
T Consensus       549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            444555566666655555442                 23455667777777776653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=82.92  E-value=17  Score=32.67  Aligned_cols=92  Identities=20%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             HHHhchHHHHHHHHHHHHHHHhC--------H----------HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC
Q psy11025        326 SRAADVAHGEDNYKQAAEYISRN--------R----------EAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED  386 (535)
Q Consensus       326 ekAA~~~eAa~af~kAA~~y~~~--------~----------~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg  386 (535)
                      ..++....+...+.+|..+|...        .          ..-..++.+.+..+... ++++|+.++.+++.+.--.+
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E   96 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE   96 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH
Confidence            33445778888888888888531        1          11244555666655544 48999999999988865543


Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        387 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       387 r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                            ..+....+++...|++..|++.|++..+.+.
T Consensus        97 ------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   97 ------EAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             ------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence                  2455566677888999999999999876654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=82.75  E-value=20  Score=42.80  Aligned_cols=73  Identities=14%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025        355 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  433 (535)
Q Consensus       355 ~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r  433 (535)
                      +|..-|.||++++ .++|...|+++.++--..      +.++.++|-.+... +.++|.++|.++...+....++..+-.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e  190 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDN------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEE  190 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            4666677777665 777777777777664221      34666777666666 777777777777666655555555544


Q ss_pred             H
Q psy11025        434 L  434 (535)
Q Consensus       434 l  434 (535)
                      +
T Consensus       191 ~  191 (906)
T PRK14720        191 I  191 (906)
T ss_pred             H
Confidence            3

>KOG0548|consensus

Probab=82.54  E-value=19  Score=40.01  Aligned_cols=52  Identities=17%  Similarity=0.186  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCV  403 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr-~~~Aa~~l~kaAel~e  403 (535)
                      |.....+.-.++...++..||..|.+|+..=-.+.+ +...+-|+.+.+.+-+
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~  410 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE  410 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence            344444444555666777888888887776544432 2333344444444333

>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers

Probab=81.97  E-value=0.54  Score=25.30  Aligned_cols=10  Identities=40%  Similarity=0.481  Sum_probs=4.4

Q ss_pred             HHHHHHHHHH
Q psy11025        335 EDNYKQAAEY  344 (535)
Q Consensus       335 a~af~kAA~~  344 (535)
                      +++|++|++|
T Consensus         2 ~~~y~~Aa~~   11 (12)
T PF02071_consen    2 IKCYEKAAEC   11 (12)
T ss_pred             cHHHHHHHhh
Confidence            3444444444

SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport

>KOG4234|consensus

Probab=81.88  E-value=11  Score=37.26  Aligned_cols=86  Identities=15%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHhCH-HHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhH
Q psy11025        331 VAHGEDNYKQAAEYISRNR-EAASTVLE-KGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF  408 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~~~-~~AA~~l~-~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y  408 (535)
                      +.+|..-|..|.++.-... ..-+-+|- +||-.++-...+.||+--.+|+++--.-      .+.+.+-|++|++.+.|
T Consensus       111 yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty------~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  111 YEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY------EKALERRAEAYEKMEKY  184 (271)
T ss_pred             HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh------HHHHHHHHHHHHhhhhH
Confidence            5567777777766543222 22333444 4444444445889999999999884332      24566889999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy11025        409 DKAADLIRQEIGYH  422 (535)
Q Consensus       409 ~~Aie~ye~~~~~~  422 (535)
                      ++|++=|.+..+.-
T Consensus       185 eealeDyKki~E~d  198 (271)
T KOG4234|consen  185 EEALEDYKKILESD  198 (271)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999876553

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=81.67  E-value=5.6  Score=31.09  Aligned_cols=49  Identities=16%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11025        366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG  420 (535)
Q Consensus       366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~  420 (535)
                      .++++|++++++++.+.-..      ...+...|.++...|+|.+|++.|++..+
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             CCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34667777777777664432      33455566666666777777777766643

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=81.64  E-value=44  Score=34.82  Aligned_cols=130  Identities=11%  Similarity=0.112  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHh
Q psy11025        369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE----SEHLLAIGRLAVALVLVQLA  444 (535)
Q Consensus       369 ~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a----~e~~~~a~rl~la~il~~L~  444 (535)
                      ++-++=+.++++=-+..+--...++...++|+.|.+..+.+.+.+++.+..+.-..    .+.+....|+.       +-
T Consensus        92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg-------~~  164 (412)
T COG5187          92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLG-------LI  164 (412)
T ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHH-------Hh
Confidence            44455555555544444335778899999999999999999999988776433222    33444444331       12


Q ss_pred             cCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-hcC
Q psy11025        445 RGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE-WGN  523 (535)
Q Consensus       445 ~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~-~~~  523 (535)
                      -+|.--..+.+|.                       +..+.+.-++++-.++.-.-.|+-+|..-..-.|..-|-+ +|+
T Consensus       165 y~d~~vV~e~lE~-----------------------~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t  221 (412)
T COG5187         165 YGDRKVVEESLEV-----------------------ADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT  221 (412)
T ss_pred             hccHHHHHHHHHH-----------------------HHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence            3454334444443                       2233344456777777666678999988889999998888 499


Q ss_pred             CCCch
Q psy11025        524 CCEAP  528 (535)
Q Consensus       524 F~~s~  528 (535)
                      |..++
T Consensus       222 F~S~E  226 (412)
T COG5187         222 FESSE  226 (412)
T ss_pred             ccccc
Confidence            98875

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=81.41  E-value=17  Score=43.28  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=58.1

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      =|.||.+.+++.+|-.+|+++...--++    +.++..-|-.|.+.+.++|.++|.+|+..|-...+++.+-+...++-+
T Consensus       122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n----~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~  197 (906)
T PRK14720        122 LAEAYAKLNENKKLKGVWERLVKADRDN----PEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH  197 (906)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh
Confidence            4788888888889999888877654222    234555566666558999999999999999888888888887777665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=81.31  E-value=26  Score=39.31  Aligned_cols=131  Identities=18%  Similarity=0.127  Sum_probs=86.7

Q ss_pred             HHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH-HH
Q psy11025        357 EKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG-RL  434 (535)
Q Consensus       357 ~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~-rl  434 (535)
                      .=.|.+|... +.++|+++..+|++.=      -+..+++.-=|+|+-..|++.+|++.++.+..+=.+.-+.+..+ +.
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            3345555443 4788888888888773      22356777778889889999999999988876655555554443 33


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHH
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAA  514 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A  514 (535)
                             .|..|+...|.+.+..|.+  .+       . ....+|         .+.. |....+..|.+|+..||+..|
T Consensus       272 -------~LRa~~~e~A~~~~~~Ftr--~~-------~-~~~~~L---------~~mQ-c~Wf~~e~a~a~~r~~~~~~A  324 (517)
T PF12569_consen  272 -------LLRAGRIEEAEKTASLFTR--ED-------V-DPLSNL---------NDMQ-CMWFETECAEAYLRQGDYGLA  324 (517)
T ss_pred             -------HHHCCCHHHHHHHHHhhcC--CC-------C-CcccCH---------HHHH-HHHHHHHHHHHHHHHhhHHHH
Confidence                   4566777778888877644  11       0 112222         0111 234448889999999999999


Q ss_pred             HHHHHH
Q psy11025        515 EKAFKE  520 (535)
Q Consensus       515 ~~a~~~  520 (535)
                      -+.+..
T Consensus       325 Lk~~~~  330 (517)
T PF12569_consen  325 LKRFHA  330 (517)
T ss_pred             HHHHHH
Confidence            887754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=81.02  E-value=13  Score=34.45  Aligned_cols=65  Identities=15%  Similarity=0.090  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .+++.++-+.+. .++|.+|++.|+.....|-..++..++ .+.  ++-++...++...|...+++|.+
T Consensus        11 ~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qA-qL~--l~yayy~~~~y~~A~a~~~rFir   75 (142)
T PF13512_consen   11 QELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQA-QLD--LAYAYYKQGDYEEAIAAYDRFIR   75 (142)
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHH-HHH--HHHHHHHccCHHHHHHHHHHHHH
Confidence            344444444443 489999999998887777655554433 222  23567778888889899998877

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=80.82  E-value=6.2  Score=43.17  Aligned_cols=64  Identities=14%  Similarity=0.019  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHH------HHhchHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q psy11025        316 LKPDAALTLYS------RAADVAHGEDNYKQAAEYISRNREA--ASTVLEKGAKSLEELK-SDAALTLYSRAADVA  382 (535)
Q Consensus       316 ~K~D~AA~lYe------kAA~~~eAa~af~kAA~~y~~~~~~--AA~~l~~AAk~~ek~~-~~eAie~y~kAaely  382 (535)
                      -.|+.+..++.      +.+.+++|..+|.+|...   +|+.  |..+|..-|-+|.... .++|+++|++|++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            35554444444      445578888888888765   3433  3355666677777764 999999999999983

>KOG1920|consensus

Probab=80.73  E-value=19  Score=43.54  Aligned_cols=27  Identities=22%  Similarity=0.462  Sum_probs=22.6

Q ss_pred             CHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy11025        317 KPDAALTLYSRAADVAHGEDNYKQAAE  343 (535)
Q Consensus       317 K~D~AA~lYekAA~~~eAa~af~kAA~  343 (535)
                      ++|+||-.|+++|+..+|..+|..+.+
T Consensus       954 ~~~~Aal~Ye~~GklekAl~a~~~~~d  980 (1265)
T KOG1920|consen  954 MSDEAALMYERCGKLEKALKAYKECGD  980 (1265)
T ss_pred             cccHHHHHHHHhccHHHHHHHHHHhcc
Confidence            558999999999999999999866543

>KOG2002|consensus

Probab=80.69  E-value=41  Score=40.06  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11025        363 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ  442 (535)
Q Consensus       363 ~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~  442 (535)
                      |.+.+...+..++..|+..-...   ..-++.+=..|+.+-..|+|++|..+|.+....-...-.+...|     ++.++
T Consensus       281 yfK~dy~~v~~la~~ai~~t~~~---~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G-----lgQm~  352 (1018)
T KOG2002|consen  281 YFKKDYERVWHLAEHAIKNTENK---SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG-----LGQMY  352 (1018)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc-----hhHHH
Confidence            34556677777777666553221   33334444566777777777777777766543222221111111     23456


Q ss_pred             HhcCCHHHHHHHHHHhh
Q psy11025        443 LARGDTVAAEKAFKEWG  459 (535)
Q Consensus       443 L~~~D~vaA~~~~e~~~  459 (535)
                      +..||.-.|+.+|+++-
T Consensus       353 i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  353 IKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             HHhchHHHHHHHHHHHH
Confidence            66777777777777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	535
2ifu_A	307	Crystal Structure Of A Gamma-Snap From Danio Rerio		8e-08

>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio Length = 307

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 302 ASTVLEKGAKSLEELKPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAK 361
           A+   E+    L++L+       Y   A V + E+             + A+  L++  K
Sbjct: 75  AAKAFEQAGXXLKDLQRXPEAVQYIEKASVXYVENG----------TPDTAAXALDRAGK 124
Query: 362 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421
             E L    A+ LY +AA V   E+  +QAAE I +A+R+ VR ++FD+AA  +++E   
Sbjct: 125 LXEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSX 184
Query: 422 HQESEHLLAIGRXXXXXXXXXXXRGDTVAAEKAFKE 457
           ++E E+     +           R D VAA+K  +E
Sbjct: 185 YKEXENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-05

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 81.9 bits (202), Expect = 3e-17
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 300 EAASTVLEKGAKSLEELK-PDAALTLYSRAADVAHGEDNYKQAAEYISR---------NR 349
           E A     + A++    +    A   + +A  +        +A +YI +           
Sbjct: 53  EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP 112

Query: 350 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 409
           + A+  L++  K +E L    A+ LY +AA V   E+  +QAAE I +A+R+ VR ++FD
Sbjct: 113 DTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172

Query: 410 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC 461
           +AA  +++E   ++E E+     +  +A VLVQL R D VAA+K  +E  + 
Sbjct: 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 18/217 (8%)

Query: 311 KSLEELKPD--AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKS 368
            S  + KPD  +A + Y++AA         +QA +              + A++    +S
Sbjct: 23  TSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDA-----------YLQEAEAHANNRS 71

Query: 369 DA-ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH 427
              A   + +A  +        +A +YI +A+ M V     D AA  + +     +  + 
Sbjct: 72  LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDL 131

Query: 428 LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQE 487
             A+     A  + +        A +   +        ++ +  ++S          ++E
Sbjct: 132 SKAVHLYQQAAAVFE-NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM---YKE 187

Query: 488 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC 524
            E+     +  +A VLVQL R D VAA+K  +E  + 
Sbjct: 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 8e-09
 Identities = 65/495 (13%), Positives = 132/495 (26%), Gaps = 148/495 (29%)

Query: 43  QKIAEIIERDFFPDLEKLHAQNDFLDAM-----------ELNDVQKLREL---------- 81
           + I  + E  F  + +    Q D   ++             + V     L          
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 82  -------------YA------KYSNSTP---------YVDRCESSPATFET-----PEHF 108
                        Y       K     P           DR  +    F        + +
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 109 TSLEEA-GSADHEASVRSQGSCSSKKSTSGKYQSL-NEFLSTHTSEDNQSFEDIIEHAKK 166
             L +A        +V   G        SGK   +  +   ++  +    F+ I      
Sbjct: 138 LKLRQALLELRPAKNVLIDG-----VLGSGK-TWVALDVCLSYKVQCKMDFK-IF----- 185

Query: 167 KHRIKYPWLYCGEDEAPENTSRFLEL------PSMQEQIDQAKD--------KDRDRRIQ 212
                  WL      +PE     L+       P+   + D + +        +   RR+ 
Sbjct: 186 -------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 213 TWKFVNKNSAM-----YTPDGVE----------LTKDEQI-----EMARNRMSINHSGTR 252
             K   +N  +                       T+ +Q+           +S++H    
Sbjct: 239 KSK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH---- 293

Query: 253 LHVNPFDEQQSKEAL--------HDLAKTQAIS------SLSGKIGVDGKEITLNSTPRN 298
            H       + K  L         DL + + ++      S+  +   DG     N    N
Sbjct: 294 -HSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 299 REAASTVLEKGAKSLEELKPDAALTLYSRAADVAHGEDNYKQAAEYISR-----NREAAS 353
            +  +T++E    SL  L+P     ++     ++    +       +S       +    
Sbjct: 352 CDKLTTIIE---SSLNVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 354 TVLEKGAKS--LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA 411
            V+ K  K   +E+   ++ +++ S   ++    +N       I     +       D  
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 412 ADLIR----QEIGYH 422
              +       IG+H
Sbjct: 466 PPYLDQYFYSHIGHH 480

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 44/287 (15%), Positives = 85/287 (29%), Gaps = 62/287 (21%)

Query: 146 LSTHTSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDK 205
           +   T E    ++DI+   +    +      C   +  +     L    +   I      
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAF-VDN--FDC--KDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 206 DRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNPFDEQQSKE 265
               R+  W  ++K   M     VE       +   + +        +    + EQ+ + 
Sbjct: 62  SGTLRL-FWTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR- 118

Query: 266 ALHDLAKTQAISSLSGKIGVDGKEITLNSTPRN--REAASTVLEKGAKSLEELKPDAALT 323
            L++                D +         N  R      L +    L EL+P   + 
Sbjct: 119 -LYN----------------DNQVFA----KYNVSRLQPYLKLRQA---LLELRPAKNVL 154

Query: 324 LY--------SRAADVAHGEDNYKQAAE------YIS-RNREAASTVLEKGAKSLEELKS 368
           +           A DV     +YK   +      +++ +N  +  TVLE     L++L  
Sbjct: 155 IDGVLGSGKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLY 207

Query: 369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLI 415
                  SR    +    N K     I    R  ++ K ++    L+
Sbjct: 208 QIDPNWTSR----SDHSSNIKLRIHSIQAELRRLLKSKPYENC--LL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 74/576 (12%), Positives = 150/576 (26%), Gaps = 170/576 (29%)

Query: 25  ASIR-QNAAPS-----YVSPRDAEQKIAEIIERDFFPDLEKLH-----------AQNDFL 67
           + I+ +   PS     Y+  RD      ++  +     L+              A+N  +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 68  DAME------L-NDVQKLRELYAKYSNSTPYVD--RCESSPATFETPEHFTSLEEAGSAD 118
           D +       +  DV    ++  K      +++   C S     E  +           D
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-----ID 210

Query: 119 HEASVRSQGSCSSKKSTSGKYQSLNEFLSTH----------------------------- 149
              + RS  S + K         L   L +                              
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 150 TSEDNQSFEDIIEHAKKKHRIKYPWLYCGEDEAPENTSRFL-----ELPSMQEQID---- 200
           T+   Q  + +         + +  +    DE      ++L     +LP      +    
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 201 ---QAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGTRLHVNP 257
                  +D       WK VN +                IE      S+N       + P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCD-----------KLTTIIE-----SSLN------VLEP 368

Query: 258 FDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITL-----NSTPRNREAASTVLEKGAKS 312
            + ++  + L       ++   S  I      I L     +    +       L K   S
Sbjct: 369 AEYRKMFDRL-------SVFPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHK--YS 415

Query: 313 LEELKP-DAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAA 371
           L E +P ++ +++ S   ++    +N                  L +    ++       
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYA---------------LHR--SIVDHYNIPKT 458

Query: 372 LTLYSRAADVAHGEDNYKQAAEYIS---RAARMCVRVKEFDKA-ADL--IRQEIGYHQES 425
                         D Y     +I    +      R+  F     D   + Q+I      
Sbjct: 459 FDSDDLIPPY---LDQY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI----RH 509

Query: 426 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPERCESGSSSFSFSLGKAGY 484
           +        ++   L QL         K +K +  +     ER  +    F   + +   
Sbjct: 510 DSTAWNASGSILNTLQQL---------KFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 485 HQESEHLLAIGRLAVALVLVQLA---RGDTVAAEKA 517
              S++            L+++A     + +  E  
Sbjct: 561 C--SKY----------TDLLRIALMAEDEAIFEEAH 584

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 15/171 (8%)

Query: 302 ASTVLEKGAKSLEELK-PDAALTLYSRAADVAHGEDNYKQAAEYISR---------NREA 351
           A     K A   ++    D A   Y  A        N   A + +               
Sbjct: 56  AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115

Query: 352 ASTVLEKGAKSLEELKSDA--ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 409
            +    +  + LE    D   A+  Y  A +    + +   + +   + A +     ++ 
Sbjct: 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175

Query: 410 KAADLIRQEIGY--HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 458
           +A+D+  + I                      L QLA  D VAA +  +E 
Sbjct: 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKK-GLCQLAATDAVAAARTLQEG 225

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 37/208 (17%), Positives = 64/208 (30%), Gaps = 17/208 (8%)

Query: 317 KPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKS-DAALTLY 375
           K + A  L  +AA +         A +              K A   ++  + D A   Y
Sbjct: 32  KFEEAADLCVQAATIYRLRKELNLAGDS-----------FLKAADYQKKAGNEDEAGNTY 80

Query: 376 SRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQ--EIGYHQESEHLLAIGR 433
             A        N   A + +  A ++     +F + A+   +  EI  +   ++  AI  
Sbjct: 81  VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140

Query: 434 LAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLA 493
             +A             + K F +  +      +    S  +S  L K+           
Sbjct: 141 YELAGEWYA-QDQSVALSNKCFIKCADLKALDGQYIEASDIYS-KLIKSSMGNRLSQWSL 198

Query: 494 IGRLAVALVLVQLARGDTVAAEKAFKEW 521
                    L QLA  D VAA +  +E 
Sbjct: 199 KDYFLKK-GLCQLAATDAVAAARTLQEG 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.7
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.7
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.67
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.64
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.6
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.56
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.55
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.45
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.42
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.38
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.27
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.26
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.14
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.11
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.07
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.02
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.87
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.76
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.76
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.75
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.74
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.74
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.72
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.71
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.7
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.68
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.67
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.65
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.62
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.57
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.57
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.57
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.57
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.52
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.5
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.49
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.38
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.32
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.3
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.21
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.19
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.14
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.14
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.13
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.11
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.03
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.02
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.01
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.96
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.95
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.94
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.91
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.91
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.9
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.9
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.89
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.86
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.76
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.7
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.66
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.65
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.61
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.57
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.56
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.51
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.49
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.46
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.4
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.4
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.35
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.32
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.29
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.29
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.27
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.2
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.19
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.16
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.14
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.11
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.08
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.98
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.98
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	95.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.95
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	95.93
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	95.9
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	95.89
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.87
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.85
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	95.82
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.77
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.77
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.76
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.67
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	95.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.3
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	95.25
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.22
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	95.18
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	95.13
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	94.72
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	94.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	94.66
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	94.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	94.4
1klx_A	138	Cysteine rich protein B; structural genomics, heli	94.4
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.32
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.1
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	93.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.91
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	93.6
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.54
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.15
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	93.04
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.88
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.75
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.67
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	92.67
2kat_A	115	Uncharacterized protein; NESG, structure, structur	92.35
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	91.72
3k9i_A	117	BH0479 protein; putative protein binding protein,	91.56
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	91.5
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.96
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.18
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	89.96
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	89.63
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	89.47
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	89.46
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	88.52
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	87.8
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	87.3
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	85.38
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.75
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	84.65
2wm9_A	428	Dedicator of cytokinesis protein 9; polymorphism,	84.34
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	83.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	82.96
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	80.37
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	80.02

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.70  E-value=1.1e-15  Score=153.71  Aligned_cols=193  Identities=22%  Similarity=0.233  Sum_probs=156.8

Q ss_pred             CHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC
Q psy11025        317 KPDAALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED  386 (535)
Q Consensus       317 K~D~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg  386 (535)
                      .+++|+++|.+||+       +.+|..+|.+|..++.+  .+..++.+|..++.+|... ++++|+++|++|++++...|
T Consensus        31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g  110 (307)
T 2ifu_A           31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG  110 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence            45599999999876       68999999999999976  4567999999999999986 59999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q psy11025        387 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPE  466 (535)
Q Consensus       387 r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~  466 (535)
                      .+..++.++..+|.++.. ++|++|++.|+++.+++...+.......++..+..++...|+...|+..|++...      
T Consensus       111 ~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------  183 (307)
T 2ifu_A          111 TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS------  183 (307)
T ss_dssp             CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred             CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Confidence            999999999999999999 9999999999999999876544434444444444556667888889999987322      


Q ss_pred             ccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---hcCCCCchhhhcc
Q psy11025        467 RCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAPEINSH  533 (535)
Q Consensus       467 f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~---~~~F~~s~E~~~~  533 (535)
                                       +......+.......+..|+|+++.||...|...+++   .|+|..++|+..+
T Consensus       184 -----------------~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l  236 (307)
T 2ifu_A          184 -----------------MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAAL  236 (307)
T ss_dssp             -----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHH
T ss_pred             -----------------HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                             1112222445555678999999999999999999998   3999999987654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.69  E-value=2.7e-15  Score=149.88  Aligned_cols=198  Identities=17%  Similarity=0.179  Sum_probs=149.3

Q ss_pred             cccCC----HHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Q psy11025        313 LEELK----PDAALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEEL-KSDAALTLYSRA  378 (535)
Q Consensus       313 l~k~K----~D~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kA  378 (535)
                      +|+||    +++|+++|.+||+       +.+|..+|.+|..++.+  ++..++.+|..++.+|.+. ++++|+.+|.+|
T Consensus        24 ~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A  103 (292)
T 1qqe_A           24 LFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (292)
T ss_dssp             HHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            56787    4589999999986       68999999999999976  4566899999999999987 599999999999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        379 ADVAHGEDNYKQAAEYISRAARMCVRV-KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       379 aely~~egr~~~Aa~~l~kaAel~e~~-~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ++++...|++..++.++..+|.++... ++|++|++.|+++.+++...+.......+...++.+++..|+...|...|++
T Consensus       104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999999999999999999996 9999999999999998876543333333333334555666788889999998


Q ss_pred             hhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---h-cCCCCchhhhc
Q psy11025        458 WGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---W-GNCCEAPEINS  532 (535)
Q Consensus       458 ~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~---~-~~F~~s~E~~~  532 (535)
                      ....+.+..              ...       +. ....++..|+|++..||...|..++++   + |+|..++|+..
T Consensus       184 al~~~~~~~--------------~~~-------~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~  240 (292)
T 1qqe_A          184 LIKSSMGNR--------------LSQ-------WS-LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF  240 (292)
T ss_dssp             HHHTTSSCT--------------TTG-------GG-HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred             HHHHHhcCC--------------ccc-------HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence            555322210              000       11 223357889999999999999999998   3 99999888754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.32  E-value=5.1e-11  Score=119.55  Aligned_cols=162  Identities=29%  Similarity=0.349  Sum_probs=133.6

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      .++.+|.+.+++.+|..+|.+|..++.+  .+..++.+|...+.+|...++++|+++|++|++++...|....++.++.+
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            3444555555577888888888888865  34568899999999998855999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccc
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSF  477 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~  477 (535)
                      +|.++...|+|++|+++|+++.+.+.........+...+..++|++..||...|...|+++.   .+|.|..++++.++.
T Consensus       161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~~~~~~e~~~l~  237 (307)
T 2ifu_A          161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY---SIPGFSGSEDCAALE  237 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTSTTSHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCCCCCCHHHHHHH
Confidence            99999999999999999999999887665445555666777889999999999999999854   567788888888777


Q ss_pred             cccccchh
Q psy11025        478 SLGKAGYH  485 (535)
Q Consensus       478 ~L~l~ay~  485 (535)
                      .| +..|.
T Consensus       238 ~l-~~~~~  244 (307)
T 2ifu_A          238 DL-LQAYD  244 (307)
T ss_dssp             HH-HHHHH
T ss_pred             HH-HHHHH
Confidence            76 55554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=3.8e-10  Score=112.40  Aligned_cols=158  Identities=18%  Similarity=0.182  Sum_probs=114.6

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEE--LKSDAALTLYSRAADVAHGEDNYKQAAEYI  395 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek--~~~~eAie~y~kAaely~~egr~~~Aa~~l  395 (535)
                      ..+.+|.+.+++.+|..+|.+|..++.+.  ...++.+|...+.+|..  .++++|+.+|++|++++...+....++.++
T Consensus        82 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~  161 (292)
T 1qqe_A           82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF  161 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            44555555556778888888888887653  44578899999999987  459999999999999999998888899999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccc
Q psy11025        396 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHL-LAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSS  474 (535)
Q Consensus       396 ~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~-~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~  474 (535)
                      .++|.++...|+|++|+++|+++.+........ ......++..++|++..||...|...|+++..  .+|.|..++++.
T Consensus       162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~  239 (292)
T 1qqe_A          162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESN  239 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHH
Confidence            999999999999999999999998765433211 11222333345788889999999999998543  466677777666


Q ss_pred             ccccc
Q psy11025        475 FSFSL  479 (535)
Q Consensus       475 ~l~~L  479 (535)
                      ++..|
T Consensus       240 ~l~~l  244 (292)
T 1qqe_A          240 FLKSL  244 (292)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.70  E-value=1.4e-06  Score=88.97  Aligned_cols=177  Identities=12%  Similarity=0.074  Sum_probs=133.7

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCc-HHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYIS  396 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr-~~~Aa~~l~  396 (535)
                      -+..|...+++.+|...|.+|.......  +..-+.++...|.++...+ +++|+++|.+|.+++...+. ...-+.++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            4556667788999999999998887653  3346788888898888764 99999999999999998876 677789999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccc
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFS  476 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l  476 (535)
                      .+|.++...|+|++|++.|+++.+.+...+.....+.....++.|+...|+...|...|++.-..               
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~---------------  253 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV---------------  253 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------
Confidence            99999999999999999999999888765543344444444567777889998899999873221               


Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        477 FSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       477 ~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                              .......+.........+.|++..|+...|...+++
T Consensus       254 --------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  289 (383)
T 3ulq_A          254 --------FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK  289 (383)
T ss_dssp             --------HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                    111111112234456678888888999888888776

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.67  E-value=4e-06  Score=85.23  Aligned_cols=137  Identities=14%  Similarity=0.072  Sum_probs=101.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      -+.+|...+++.+|...|.+|...+...  ...-+.++...+.+|... ++++|+.+|.+|.+++...+....-+.++..
T Consensus        92 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  171 (411)
T 4a1s_A           92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN  171 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            3455555666778888888887776542  334566777777777765 4999999999999998887777778889999


Q ss_pred             HHHHHHHhhh-----------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        398 AARMCVRVKE-----------------FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       398 aAel~e~~~~-----------------y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      +|.++...++                 |++|+++|++..++...................+++..|+...|...|++
T Consensus       172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (411)
T 4a1s_A          172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE  248 (411)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            9999999999                 99999999888777655443333333344445666777888889888886

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.66  E-value=6.2e-06  Score=79.68  Aligned_cols=137  Identities=15%  Similarity=0.089  Sum_probs=102.4

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      -+.+|...+++.+|...|.+|......  .+..-+.++...+.++... ++++|+++|.+|.+++...+....-+.++..
T Consensus        49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  128 (338)
T 3ro2_A           49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN  128 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            455555566677888888888777654  3334567777778887765 4999999999999999888888888889999


Q ss_pred             HHHHHHHhhh--------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        398 AARMCVRVKE--------------------FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       398 aAel~e~~~~--------------------y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      +|.++...++                    |++|+++|++.....................+.+.+..|+...|...|++
T Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  208 (338)
T 3ro2_A          129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ  208 (338)
T ss_dssp             HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999                    99999999988777655443333333333344566667888888888886

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.64  E-value=4.9e-06  Score=83.60  Aligned_cols=167  Identities=13%  Similarity=0.041  Sum_probs=124.6

Q ss_pred             hHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        331 VAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      +.+|...|.+|..+....  ...-+.++...+.++... ++++|+.+|.+|.+++...+.....+.++...|.++...++
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            667777777777776553  344667788888888765 49999999999999999988888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhh
Q psy11025        408 FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQE  487 (535)
Q Consensus       408 y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~  487 (535)
                      |++|+++|++..+.....+...........++.+++..|+...|...|++...                       +...
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----------------------~~~~  299 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA-----------------------IAQE  299 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------HHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-----------------------HHHh
Confidence            99999999999888766543333334444445667778898889888886222                       1111


Q ss_pred             hhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        488 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       488 ~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ..............+.|++..||...|...+++
T Consensus       300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  332 (406)
T 3sf4_A          300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  332 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            222333444556778899999999999888876

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.64  E-value=4.6e-06  Score=84.80  Aligned_cols=178  Identities=13%  Similarity=0.046  Sum_probs=129.8

Q ss_pred             HHHHHHHHHhc-----------------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Q psy11025        320 AALTLYSRAAD-----------------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEEL-KSDAALTLYSRAA  379 (535)
Q Consensus       320 ~AA~lYekAA~-----------------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAa  379 (535)
                      .-+.+|...++                 +.+|...|.+|..+...  .+..-+.++...+.++... ++++|+.+|++|.
T Consensus       171 ~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  250 (411)
T 4a1s_A          171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL  250 (411)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            45566667777                 66666667766666543  3344566777778888765 4999999999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        380 DVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       380 ely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      +++...+.....+.++...|.++...++|++|+++|+++.+.................+..+++..|+...|...|++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99988877788888999999999999999999999999988876543333333333444566777889888999988632


Q ss_pred             hccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        460 NCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       460 ~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      .                       +.................+.|++..||.-.|...+++
T Consensus       331 ~-----------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          331 A-----------------------IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             H-----------------------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             H-----------------------HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            2                       1112222333444557778999999999999988876

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.63  E-value=6.5e-06  Score=79.56  Aligned_cols=167  Identities=13%  Similarity=0.052  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        331 VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      +.+|...|.+|......  ....-+.++...+.++... ++++|+.+|++|.+++...+....-+.++...|.++...++
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            66666777777666543  3334566777777777664 59999999999999998888788888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhh
Q psy11025        408 FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQE  487 (535)
Q Consensus       408 y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~  487 (535)
                      |++|+++|++..+....................+.+..|+...|...|++...                       +...
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----------------------~~~~  295 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA-----------------------IAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------HHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------------HHHh
Confidence            99999999999888766543333333434444566778888889888886222                       1112


Q ss_pred             hhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        488 SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       488 ~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ..............+.+++..||...|...+++
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            222333444556778999999999999999987

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.63  E-value=5.5e-06  Score=83.25  Aligned_cols=137  Identities=14%  Similarity=0.072  Sum_probs=103.5

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      -+.+|...+++.+|..+|.+|.......  ...-+.++...+.++... ++++|+.+|.+|.+++...+.....+.++..
T Consensus        53 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  132 (406)
T 3sf4_A           53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN  132 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            4455556666778888888887776543  334567777778888765 4999999999999999888777888889999


Q ss_pred             HHHHHHHhhh--------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        398 AARMCVRVKE--------------------FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       398 aAel~e~~~~--------------------y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      +|.++...++                    |++|+++|++..+.+...+.....+.....++.+++..|+...|...|++
T Consensus       133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (406)
T 3sf4_A          133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ  212 (406)
T ss_dssp             HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred             HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999                    99999999998887766543333333444445566667888788888886

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.60  E-value=4.6e-06  Score=85.12  Aligned_cols=175  Identities=14%  Similarity=0.059  Sum_probs=132.1

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCc-HHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISR  397 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr-~~~Aa~~l~k  397 (535)
                      +..|..-+++.+|...|.+|.......  ...-+.++...|.+|-..+ +++|+.+|.+|.+++...+. ...-+.++..
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            344556677899999999998877653  3457788888898888764 99999999999999988765 5678899999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccc
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSF  477 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~  477 (535)
                      +|.++...++|++|++.|+++.+.+...+.....+.....++.|+...|+...|...|++.-.                 
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-----------------  250 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK-----------------  250 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------
Confidence            999999999999999999999988766544334444444455677778888889999986222                 


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        478 SLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       478 ~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                            +......... ....+..+.+++..|+.-.|...+++
T Consensus       251 ------~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~  286 (378)
T 3q15_A          251 ------VSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEE  286 (378)
T ss_dssp             ------HHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------HHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                  1111111222 34456778999999999999998887

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.56  E-value=9.2e-06  Score=82.89  Aligned_cols=198  Identities=16%  Similarity=0.032  Sum_probs=141.6

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNR---EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  395 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~---~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l  395 (535)
                      .-+.+|...+++.+|...|.+|.+++.+.+   ..-+.++...|.++...+ +++|+++|.+|.+++...+....-+.++
T Consensus       146 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  225 (378)
T 3q15_A          146 KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL  225 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345566666778899999999999987643   346888888899888765 9999999999999999888888899999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC---CCcccccc
Q psy11025        396 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA---PERCESGS  472 (535)
Q Consensus       396 ~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~---~~f~~sre  472 (535)
                      ..+|.++...++|++|+++|+++.+.+........ ......++.++...|+...|...|++.-..+..   +.+...  
T Consensus       226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--  302 (378)
T 3q15_A          226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--  302 (378)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH--
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--
Confidence            99999999999999999999999988765433222 223333445667778888899999885443322   111000  


Q ss_pred             ccccccc-----------cccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        473 SSFSFSL-----------GKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       473 ~~~l~~L-----------~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ...+..+           ....+.+....+..+..+....+.++...||...|...+++
T Consensus       303 ~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~  361 (378)
T 3q15_A          303 FLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK  361 (378)
T ss_dssp             HHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            0000000           00112223334556666678889999999999999888876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.55  E-value=9e-06  Score=73.95  Aligned_cols=150  Identities=15%  Similarity=0.082  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q psy11025        348 NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  426 (535)
Q Consensus       348 ~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e  426 (535)
                      .+..-+.++...+.++... ++++|+.+|.+|.+++...|.....+.++..+|.++...|+|++|+++|++..+.+....
T Consensus        21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  100 (203)
T 3gw4_A           21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP  100 (203)
T ss_dssp             STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            4434466677777777665 599999999999999999998888899999999999999999999999999998876544


Q ss_pred             -HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHH
Q psy11025        427 -HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQ  505 (535)
Q Consensus       427 -~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~  505 (535)
                       .....+.....+..+++..|+...|...|++...                       +.................+.|+
T Consensus       101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------------------~~~~~~~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A          101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLV-----------------------YAQQADDQVAIACAFRGLGDLA  157 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------------HHHhccchHHHHHHHHHHHHHH
Confidence             3323333334445666677888889888886221                       1112222334445456778999


Q ss_pred             hccCCHHHHHHHHHH
Q psy11025        506 LARGDTVAAEKAFKE  520 (535)
Q Consensus       506 L~~gD~V~A~~a~~~  520 (535)
                      +..||...|...+++
T Consensus       158 ~~~g~~~~A~~~~~~  172 (203)
T 3gw4_A          158 QQEKNLLEAQQHWLR  172 (203)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHH
Confidence            999999999888876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.52  E-value=1.2e-05  Score=69.04  Aligned_cols=139  Identities=13%  Similarity=0.049  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYIS  396 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~  396 (535)
                      .-+.+|...+++.+|...|.+|.....+  ....-+.++...+.++... ++++|+.+|++|.+++...+.....+.++.
T Consensus        14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   93 (164)
T 3ro3_A           14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY   93 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            3455666667789999999999998865  3445667788888888765 499999999999999988888888889999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      .+|.++...++|++|+++|++..+.................+..+++..|+...|...|++.
T Consensus        94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999998887665433333333333445667778888898888863

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.49  E-value=1.7e-05  Score=68.20  Aligned_cols=147  Identities=13%  Similarity=0.003  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q psy11025        351 AASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL  429 (535)
Q Consensus       351 ~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~  429 (535)
                      .-+.++...+.++... ++++|+.+|.+|.+++...+.....+.++..+|.++...++|++|+++|++..+.+...+...
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            3456667777777654 599999999999999988887888888999999999999999999999999988876654333


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Q psy11025        430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARG  509 (535)
Q Consensus       430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~g  509 (535)
                      ........+..++...++...|...|++.-.                       +.................+.|++..|
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----------------------~~~~~~~~~~~~~~~~~la~~~~~~g  143 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA-----------------------IAQELKDRIGEGRACWSLGNAYTALG  143 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------HHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------------------HHHHccchHhHHHHHHHHHHHHHHcc
Confidence            3333444445667778888889888886322                       11112223334455577789999999


Q ss_pred             CHHHHHHHHHH
Q psy11025        510 DTVAAEKAFKE  520 (535)
Q Consensus       510 D~V~A~~a~~~  520 (535)
                      |...|...+++
T Consensus       144 ~~~~A~~~~~~  154 (164)
T 3ro3_A          144 NHDQAMHFAEK  154 (164)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999998876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.47  E-value=1.9e-05  Score=80.46  Aligned_cols=199  Identities=12%  Similarity=0.058  Sum_probs=139.5

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRN---REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  395 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~---~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l  395 (535)
                      .-+.+|...+++.+|...|.+|..++.+.   ...-+.++...|.+|...+ +++|+++|.+|.+++...+....-+.++
T Consensus       148 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  227 (383)
T 3ulq_A          148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTL  227 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34566677777899999999999998764   3346788888888888764 9999999999999999988888889999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC---CCCcccc--
Q psy11025        396 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE---APERCES--  470 (535)
Q Consensus       396 ~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~---~~~f~~s--  470 (535)
                      ..+|.++...|+|++|++.|+++.+.+...............++.+++..|+...|...|++.-..+.   ++.+...  
T Consensus       228 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  307 (383)
T 3ulq_A          228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFE  307 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999988765433111122333344566677888889888887333221   1111000  


Q ss_pred             ---------ccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        471 ---------GSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       471 ---------re~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                               ........  ...+.+...............+.++...||...|...+++
T Consensus       308 ~l~~~~~~~~~~~~~~~--al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~  364 (383)
T 3ulq_A          308 FLKSLYLSGPDEEAIQG--FFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK  364 (383)
T ss_dssp             HHHHHHTSSCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHH--HHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                     00000000  0112223344555555667889999999999999998887

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.45  E-value=1.7e-05  Score=76.41  Aligned_cols=180  Identities=15%  Similarity=0.141  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC--CcHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISR----NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE--DNYKQAA  392 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~----~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e--gr~~~Aa  392 (535)
                      .-+.+|...+++.+|...|.+|...+.+    ....-+.++...+.++... ++++|+.+|.+|++++...  +....-.
T Consensus        32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  111 (311)
T 3nf1_A           32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA  111 (311)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            4566777778899999999999998764    2344567788888888765 4999999999999998554  3345667


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccc
Q psy11025        393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCES  470 (535)
Q Consensus       393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~--e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~s  470 (535)
                      .++..+|.++...++|++|+++|++..+.+...  ............++.+.+..++...|...|++....+.       
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------  184 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ-------  184 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------
Confidence            888899999999999999999999998876443  11112222223334566677888889999887322100       


Q ss_pred             ccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        471 GSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       471 re~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                  ...  ..............+.|++..|+...|...+++
T Consensus       185 ------------~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          185 ------------TKL--GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             ------------HTS--CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ------------HHh--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                        000  000112233346678899999999999988876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.44  E-value=3.2e-05  Score=70.24  Aligned_cols=138  Identities=11%  Similarity=0.094  Sum_probs=110.1

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC-cHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED-NYKQAAEYI  395 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg-r~~~Aa~~l  395 (535)
                      .-+.+|...+++.+|...|.+|..++...  ...-+.++...+.++... ++++|+.+|.+|.+++...+ .....+.++
T Consensus        31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  110 (203)
T 3gw4_A           31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA  110 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence            45667777788999999999999988763  444677788888888775 59999999999999998887 666788899


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        396 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       396 ~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ..+|.++...|+|++|+..|++..+.....+.....+.....+..+++..|+...|...|++
T Consensus       111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  172 (203)
T 3gw4_A          111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR  172 (203)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            99999999999999999999999888765544333333334445667778898889888876

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.42  E-value=1.6e-05  Score=76.59  Aligned_cols=200  Identities=14%  Similarity=0.085  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC--CcHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRN----REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE--DNYKQAA  392 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~----~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e--gr~~~Aa  392 (535)
                      .-+.+|...+++.+|...|.+|...+.+.    ...-+.++...+.++... ++++|+.+|.+|.+++...  +....-.
T Consensus        74 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (311)
T 3nf1_A           74 ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA  153 (311)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            34556666666778888888888776442    233566777777777765 4999999999999997543  3345667


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccc
Q psy11025        393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCES  470 (535)
Q Consensus       393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~--e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~s  470 (535)
                      ..+..+|.++...++|++|+++|++..+.+...  ............+..+++..|+...|...|++....+....+...
T Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  233 (311)
T 3nf1_A          154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV  233 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            788889999999999999999999998876543  111111122222334555667887798888874332110000000


Q ss_pred             ---------------------ccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        471 ---------------------GSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       471 ---------------------re~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                           ......... +..+.................+.|++..|+...|...+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  303 (311)
T 3nf1_A          234 DDENKPIWMHAEEREECKGKQKDGTSFGEY-GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA  303 (311)
T ss_dssp             ----CCHHHHHHHHHHC-------CCSCCC-C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhcCchhhHHHHHHH-HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                                 000000000 1111111112233444557789999999999999999886

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.38  E-value=2.8e-05  Score=73.47  Aligned_cols=200  Identities=14%  Similarity=0.068  Sum_probs=122.9

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC--cHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRN----REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED--NYKQAAE  393 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~----~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg--r~~~Aa~  393 (535)
                      -+.+|...+++.+|..+|.+|...+.+.    ...-+.++...|.++... ++++|+++|.+|.+++...+  ....-..
T Consensus        49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  128 (283)
T 3edt_B           49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK  128 (283)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            4555556666788888888888877432    234566777788888765 49999999999999975431  1245567


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcc--c
Q psy11025        394 YISRAARMCVRVKEFDKAADLIRQEIGYHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERC--E  469 (535)
Q Consensus       394 ~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~--e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~--~  469 (535)
                      .+..+|.++...++|++|+++|++..+.+...  ............+..+++..|+...|...|++....+....+.  .
T Consensus       129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  208 (283)
T 3edt_B          129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN  208 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            88899999999999999999999998886442  1111111222223455666788888999988744321100000  0


Q ss_pred             ccccccccccc------------------ccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        470 SGSSSFSFSLG------------------KAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       470 sre~~~l~~L~------------------l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      .....+...++                  ...+.................+.++...|+...|...+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  277 (283)
T 3edt_B          209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC  277 (283)
T ss_dssp             SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            00000000000                  0000000011233344457789999999999999999876

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.29  E-value=3.5e-05  Score=72.84  Aligned_cols=169  Identities=15%  Similarity=0.143  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHH
Q psy11025        331 VAHGEDNYKQAAEYISR----NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE--DNYKQAAEYISRAARMCV  403 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~----~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e--gr~~~Aa~~l~kaAel~e  403 (535)
                      +.+|...|.+|...+.+    ....-+.++...|.++... ++++|+.+|.+|.+++...  +....-+.++..+|.++.
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~   96 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG   96 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence            44455555555555532    2233456677777777765 4999999999999997554  334566778999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccc
Q psy11025        404 RVKEFDKAADLIRQEIGYHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGK  481 (535)
Q Consensus       404 ~~~~y~~Aie~ye~~~~~~~a~--e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l  481 (535)
                      ..++|++|+++|+++.+.+...  .........+..++.+....|+...|...|++.-..+.                  
T Consensus        97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------  158 (283)
T 3edt_B           97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA------------------  158 (283)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH------------------
T ss_pred             HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------
Confidence            9999999999999998886543  11112222233334566778888889999887322100                  


Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        482 AGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       482 ~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                       ...  ..............+.|++..|+...|...+++
T Consensus       159 -~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  194 (283)
T 3edt_B          159 -TRL--GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE  194 (283)
T ss_dssp             -HHS--CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -Hhc--CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             000  000122233446778999999999999999876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.27  E-value=6.7e-05  Score=71.02  Aligned_cols=183  Identities=10%  Similarity=-0.081  Sum_probs=120.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|.+.+++.+|...|.++...+-.++. +..++...|.++.+. ++++|+..|.++++.+-.......   .+-..
T Consensus         9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~---a~~~~   84 (225)
T 2yhc_A            9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY---VMYMR   84 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH---HHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH---HHHHH
Confidence            4556677778999999999999876544332 445666677777765 599999999999999877654322   23333


Q ss_pred             HHHHH------------------HhhhHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHhcCCHH
Q psy11025        399 ARMCV------------------RVKEFDKAADLIRQEIGYHQESEH-----------LLAIGRLAVALVLVQLARGDTV  449 (535)
Q Consensus       399 Ael~e------------------~~~~y~~Aie~ye~~~~~~~a~e~-----------~~~a~rl~la~il~~L~~~D~v  449 (535)
                      |.++.                  ..+++++|+..|++..+.+-....           ........+..+.+.+..|+..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~  164 (225)
T 2yhc_A           85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV  164 (225)
T ss_dssp             HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            33333                  358999999999999766532211           1111111122334566678888


Q ss_pred             HHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHh-cCCCCch
Q psy11025        450 AAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAP  528 (535)
Q Consensus       450 aA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~~-~~F~~s~  528 (535)
                      .|+..|+++.....+                          ........+..+.|++..||...|...++.+ -..+.+.
T Consensus       165 ~A~~~~~~~l~~~p~--------------------------~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          165 AVVNRVEGMLRDYPD--------------------------TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHHHSTT--------------------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHHHHCcC--------------------------CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            899999874432111                          0112233467799999999999999999984 6666666


Q ss_pred             hhhc
Q psy11025        529 EINS  532 (535)
Q Consensus       529 E~~~  532 (535)
                      |.--
T Consensus       219 ~~~~  222 (225)
T 2yhc_A          219 EHHH  222 (225)
T ss_dssp             CCTT
T ss_pred             hhcc
Confidence            5543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.26  E-value=3.5e-05  Score=75.90  Aligned_cols=178  Identities=8%  Similarity=-0.085  Sum_probs=124.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREA--ASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYIS  396 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~--AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~  396 (535)
                      +.+..+...+++.+|...|.++.+.....++.  -+..+...+.++... ++++|+.+|++|.++....+.....+.++.
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34555666678899999998887644334443  244454456666554 699999999999998666655556778999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccc
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSF  475 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~  475 (535)
                      .+|.++...|+|++|+++|+++.+.+... ........++.-++.++...++...|...|++.-..              
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~--------------  225 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI--------------  225 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------
Confidence            99999999999999999999998877654 333333334444456677788888898888862221              


Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHHHhccC-CHHHHHHHHHH
Q psy11025        476 SFSLGKAGYHQESEHLLAIGRLAVALVLVQLARG-DTVAAEKAFKE  520 (535)
Q Consensus       476 l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~g-D~V~A~~a~~~  520 (535)
                               ..........+......|.|+...| +...|...+++
T Consensus       226 ---------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~  262 (293)
T 3u3w_A          226 ---------SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             ---------HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ---------HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence                     1111122233555678899999999 56888888876

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.14  E-value=0.00026  Score=66.08  Aligned_cols=188  Identities=13%  Similarity=0.097  Sum_probs=99.7

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED-NYKQAAEYISRA  398 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg-r~~~Aa~~l~ka  398 (535)
                      -+.+|.+.+++.+|..+|.++.... .+    +.++...+.++... ++++|+++|.+|+++....+ ....-...+...
T Consensus        11 ~g~~~~~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A           11 EGNKFYKARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            3445555566777777777776665 32    23455556666554 37777777777777765442 344445666677


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHH-------------hh-------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQE-------------SE-------HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a-------------~e-------~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      |.++...++|++|++.|++..+....             ..       ............+.+.+..|+...|...|++.
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  165 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM  165 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            77777777777777777766553110             00       00111112222334555667777777777764


Q ss_pred             hhccCCCCccccccccccccc-----cccchhhhhhhHHH-------HHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        459 GNCCEAPERCESGSSSFSFSL-----GKAGYHQESEHLLA-------IGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       459 ~~~~~~~~f~~sre~~~l~~L-----~l~ay~~~~~~~~~-------~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      .....+  ..     .....+     ....|.+....+..       .....+..+.|++..|+...|...+++
T Consensus       166 ~~~~~~--~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          166 IKRAPE--DA-----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHCTT--CH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhcCcc--cH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            332211  10     001110     01111111111111       122335667888888888888888776

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.11  E-value=6.1e-05  Score=77.16  Aligned_cols=178  Identities=10%  Similarity=0.042  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNRE--AASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYIS  396 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~--~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~  396 (535)
                      .-+.+|.+.++|.+|.+.|.++...+...+.  .++..+...+.++... ++++|+++|.++..+....++...-+.++.
T Consensus        60 ~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  139 (434)
T 4b4t_Q           60 ELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI  139 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence            3578899999999999999999888766433  2344444445555544 499999999999999888776555678899


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccc
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFS  476 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l  476 (535)
                      +.|.++...|+|.+|+.++++........+-......+.+..+-+++..+|...|...|++.-.                
T Consensus       140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------  203 (434)
T 4b4t_Q          140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART----------------  203 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----------------
Confidence            9999999999999999999998766544221111122333334557778999999999876211                


Q ss_pred             ccccccchhhhh-hhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        477 FSLGKAGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       477 ~~L~l~ay~~~~-~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                             ....+ ......+......|+++.+.+|+-.|.+.+.+
T Consensus       204 -------~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~  241 (434)
T 4b4t_Q          204 -------AANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE  241 (434)
T ss_dssp             -------HHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             -------HhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence                   00011 11344556667789999999999999888765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.07  E-value=9.7e-05  Score=72.70  Aligned_cols=177  Identities=8%  Similarity=-0.094  Sum_probs=117.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNRE--AASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~--~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      -+..|..-+++.+|.+.|.++.+.....+.  .-...+...+.++... ++++|+++|.+|.++..........+.++..
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            344455556788888888887665433332  1233344456666655 6999999999999987665545556789999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccc
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFS  476 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~~a~e~-~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l  476 (535)
                      +|.++...++|++|+++|+++.+.+..... .........-++.+....|+...|...|++.-..+              
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--------------  226 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--------------  226 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--------------
Confidence            999999999999999999999877654311 11111223334456667788888999998732211              


Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHH-HHHHHH
Q psy11025        477 FSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAA-EKAFKE  520 (535)
Q Consensus       477 ~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A-~~a~~~  520 (535)
                               .........+...+..|.|+...|+.-.| ...+++
T Consensus       227 ---------~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          227 ---------CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             ---------HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ---------HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence                     00111112344457789999999999888 666665

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.02  E-value=0.00013  Score=70.08  Aligned_cols=137  Identities=12%  Similarity=-0.009  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|.+.+++.+|...|.++...+-.++ .+..++...|.++... ++++|+..|+++++++-....   ....+-..
T Consensus        20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~a~~~l   95 (261)
T 3qky_A           20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---VPQAEYER   95 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---hHHHHHHH
Confidence            455566666789999999999876543332 2456777778887765 599999999999999876633   34567778


Q ss_pred             HHHHHH--------hhhHHHHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        399 ARMCVR--------VKEFDKAADLIRQEIGYHQESEHLLAI-----------GRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       399 Ael~e~--------~~~y~~Aie~ye~~~~~~~a~e~~~~a-----------~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      |.++..        .++|++|++.|++..+.+-.......+           ....+..+.+++..|+...|+..|+++.
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            888888        899999999999998776432211111           0001223456677889888999998754


Q ss_pred             h
Q psy11025        460 N  460 (535)
Q Consensus       460 ~  460 (535)
                      .
T Consensus       176 ~  176 (261)
T 3qky_A          176 D  176 (261)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.91  E-value=0.00021  Score=67.40  Aligned_cols=111  Identities=21%  Similarity=0.155  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC
Q psy11025        368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD  447 (535)
Q Consensus       368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D  447 (535)
                      +++|+.+|.+|+++.-..      ...+...|.++...|++++|++.|+++.+.....+.....       +.+.+..|+
T Consensus       100 ~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l-------a~~~~~~g~  166 (217)
T 2pl2_A          100 LEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL-------AELYLSMGR  166 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH-------HHHHHHcCC
Confidence            667777777777664332      2345566677777788888888888877665111122222       234555677


Q ss_pred             HHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        448 TVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       448 ~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ...|...|++.-..  +|.+                           ....+..+.+++..||...|...+++
T Consensus       167 ~~~A~~~~~~al~~--~P~~---------------------------~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          167 LDEALAQYAKALEQ--APKD---------------------------LDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHHHHH--STTC---------------------------HHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHh--CCCC---------------------------hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            77788888763321  1110                           11235567888899999998887764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.87  E-value=0.0012  Score=59.19  Aligned_cols=155  Identities=17%  Similarity=0.103  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+-|++.+|..+|.+|.+..-++    +.++..-|.++.+.+ +++|+..+.++.......      ...+...
T Consensus        10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~   79 (184)
T 3vtx_A           10 DIGDKKRTKGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------AEAYYIL   79 (184)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh------HHHHHHH
Confidence            45677888888999999999998764333    235777788887754 999999999998876554      3456667


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccc
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSF  477 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~  477 (535)
                      +.++...++++.|++.++++....... ......       +.+....|+...|+..|++.-..  +|..          
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~~l~~--~p~~----------  140 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKL-------GLVYDSMGEHDKAIEAYEKTISI--KPGF----------  140 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHH--CTTC----------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH-------HHHHHHhCCchhHHHHHHHHHHh--cchh----------
Confidence            888888899999999999987654332 122222       24555678888899999874331  1110          


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        478 SLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       478 ~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                       .......|.|+...|+.-.|...+++
T Consensus       141 -----------------~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A          141 -----------------IRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             -----------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----------------hhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                             12235678999999999999999887

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.83  E-value=0.00018  Score=73.58  Aligned_cols=180  Identities=8%  Similarity=0.049  Sum_probs=125.0

Q ss_pred             CHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-------------HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Q psy11025        317 KPDAALTLYSRAADVAHGEDNYKQAAEYISRN-------------REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVA  382 (535)
Q Consensus       317 K~D~AA~lYekAA~~~eAa~af~kAA~~y~~~-------------~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely  382 (535)
                      +.++|-.++ +.+++.+|.+.|.++.+.....             ...-.+++...+++|.+. ++++|+++|.++..++
T Consensus         7 ~l~~a~~l~-~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            7 KLEEARRLV-NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHH-HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            445665554 4588999999999987755321             112345678888888775 5999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcc
Q psy11025        383 HGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCC  462 (535)
Q Consensus       383 ~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~  462 (535)
                      ...++...+......++.++...+.+++|+++|++...+..........+++...++-+++..|++..|...+++....+
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            98887777777777777777778999999999999988776543211122233333455667788888988888743321


Q ss_pred             CCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        463 EAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       463 ~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ..                      ..... ......+..+-+++..||+..|...+.+
T Consensus       166 ~~----------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~  200 (434)
T 4b4t_Q          166 KK----------------------LDDKP-SLVDVHLLESKVYHKLRNLAKSKASLTA  200 (434)
T ss_dssp             TT----------------------SSCST-HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             Hh----------------------cccch-hHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            11                      00011 1123346778999999999999999876

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.82  E-value=0.00054  Score=68.40  Aligned_cols=23  Identities=17%  Similarity=0.088  Sum_probs=19.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHH
Q psy11025        498 AVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       498 ~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ....+.|++..|+...|...+++
T Consensus       284 ~~~l~~~~~~~g~~~~A~~~~~~  306 (365)
T 4eqf_A          284 RYNLGISCINLGAYREAVSNFLT  306 (365)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
Confidence            35678888888999999888887

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.81  E-value=0.001  Score=62.87  Aligned_cols=183  Identities=13%  Similarity=-0.015  Sum_probs=104.9

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|...+++.+|..+|.+|.......    ..++...|.++... ++++|+.+|++|+++....      ...+...|
T Consensus        49 l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la  118 (275)
T 1xnf_A           49 RGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRG  118 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------THHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc------cHHHHHHH
Confidence            3444555555666666676666543222    23455566666655 4999999999999986543      35677888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccc
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSL  479 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L  479 (535)
                      .++...|+|++|+++|++..+...........    +  .++ +..++...|...|++......+....-..-...+...
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~----~--~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW----L--YLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI  191 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH----H--HHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSS
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCChHHHHH----H--HHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence            89999999999999999987654333211111    1  111 3346666687777664332222110000000000000


Q ss_pred             c----ccchhhhhhhH----HHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        480 G----KAGYHQESEHL----LAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       480 ~----l~ay~~~~~~~----~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      +    +..+.......    .......+..+.|++..||...|...+++
T Consensus       192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  240 (275)
T 1xnf_A          192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL  240 (275)
T ss_dssp             CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            0    01111111111    12245557889999999999999999988

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.78  E-value=0.0013  Score=66.11  Aligned_cols=175  Identities=13%  Similarity=0.004  Sum_probs=118.7

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRN-REAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~-~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      +.++...+++.+|...+.+|....... +..-+.++...+.++-. .++++|..+|.+|..+....|.....+.++...|
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445556677888999998887655322 22234455555555554 5699999999999999999988888888899999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccc
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQESEHL--LAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSF  477 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~e~~--~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~  477 (535)
                      .++...|+|.+|++.|++...........  ............+....|+...|...|++.-..+....           
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------  169 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-----------  169 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-----------
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC-----------
Confidence            99999999999999999998877543211  11111112223455667888889999887333221100           


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        478 SLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       478 ~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                  ... ........+.+++..||...|...+++
T Consensus       170 ------------~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~  199 (373)
T 1hz4_A          170 ------------PQQ-QLQCLAMLIQCSLARGDLDNARSQLNR  199 (373)
T ss_dssp             ------------GGG-GHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ------------cHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                        000 112234567788889999999888876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.76  E-value=0.00023  Score=70.00  Aligned_cols=128  Identities=12%  Similarity=0.015  Sum_probs=94.6

Q ss_pred             chHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHh
Q psy11025        330 DVAHGEDNYKQAAEYISRNR--EAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRV  405 (535)
Q Consensus       330 ~~~eAa~af~kAA~~y~~~~--~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e-gr~~~Aa~~l~kaAel~e~~  405 (535)
                      ++.+|...|.+|........  ...+.+|...+.+|... ++++|+.+|++|.+++... +....-+.++..+|.++...
T Consensus       130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            46777777777776443322  23566788888888776 4999999999999998766 56677788999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q psy11025        406 KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARG-DTVAAEKAFKE  457 (535)
Q Consensus       406 ~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~-D~vaA~~~~e~  457 (535)
                      ++|++|+++|+++.++....+.....+.++.-.+.|+...| +...|...|++
T Consensus       210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~  262 (293)
T 3u3w_A          210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            99999999999998887654432222333333446666777 44668888876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.76  E-value=0.00082  Score=63.06  Aligned_cols=157  Identities=13%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|.+.+++.+|...|.++.......    ..++...+.++... ++++|+++|.++..    .+....-...+...|
T Consensus        77 la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la  148 (252)
T 2ho1_A           77 LAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLG  148 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHH
Confidence            3444444455555555555554432222    12334444444443 36666666666655    111112234455566


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccc
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSL  479 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L  479 (535)
                      .++...+++++|+++|++..+......      ......+.+.+..|+...|...|++......+               
T Consensus       149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------------  207 (252)
T 2ho1_A          149 LVSLQMKKPAQAKEYFEKSLRLNRNQP------SVALEMADLLYKEREYVPARQYYDLFAQGGGQ---------------  207 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------------
Confidence            666666777777777766654432110      01111123344456666676666653221000               


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        480 GKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       480 ~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                    ........+.|+...||...|...+++
T Consensus       208 --------------~~~~~~~~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          208 --------------NARSLLLGIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             --------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                          011124456777888999999999887

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.75  E-value=0.0011  Score=64.60  Aligned_cols=120  Identities=8%  Similarity=-0.029  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHHHHHhcCCcHHHHHHHH---------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy11025        367 KSDAALTLYSRAADVAHGEDNYKQAAEYI---------SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVA  437 (535)
Q Consensus       367 ~~~eAie~y~kAaely~~egr~~~Aa~~l---------~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la  437 (535)
                      ++++|+.+|+++.++.....   .+...+         ...|.++...++|++|++.|++..+..........  .....
T Consensus       203 ~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~  277 (359)
T 3ieg_A          203 DHELSLSEVRECLKLDQDHK---RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV--RSKER  277 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH--HHHHH
T ss_pred             CHHHHHHHHHHHHhhCccch---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH--HHHHH
Confidence            35666666666665543332   111122         12255566667777777777766554433211111  11111


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHH
Q psy11025        438 LVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKA  517 (535)
Q Consensus       438 ~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a  517 (535)
                      .+.+....|+...|...|++......                             ......+..+.|++..||...|...
T Consensus       278 la~~~~~~~~~~~A~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~g~~~~A~~~  328 (359)
T 3ieg_A          278 ICHCFSKDEKPVEAIRICSEVLQMEP-----------------------------DNVNALKDRAEAYLIEEMYDEAIQD  328 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-----------------------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCc-----------------------------ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            22344455666667777665322100                             0112346678899999999999999


Q ss_pred             HHH
Q psy11025        518 FKE  520 (535)
Q Consensus       518 ~~~  520 (535)
                      +++
T Consensus       329 ~~~  331 (359)
T 3ieg_A          329 YEA  331 (359)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            988

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.74  E-value=0.0025  Score=63.99  Aligned_cols=137  Identities=13%  Similarity=0.036  Sum_probs=98.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcH--HHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNY--KQAAEYI  395 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~--~~Aa~~l  395 (535)
                      -+.+|...|++.+|...|.+|.......  ....+.++...+.++... ++++|+.+|.+|..++...+..  ...+.++
T Consensus        59 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  138 (373)
T 1hz4_A           59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV  138 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHH
Confidence            3456667778899999999999887664  334566667777777655 5999999999999998766543  3456677


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        396 SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       396 ~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      ...|.++...|+|++|..+|++..+.....+.... .........+.+..|+...|...|++.
T Consensus       139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            78899999999999999999999877653221111 111122234566778988898888873

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.74  E-value=0.0014  Score=61.05  Aligned_cols=129  Identities=10%  Similarity=-0.015  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYIS-RNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~-~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      .-+.+|.+.+++.+|..+|.+|..... .+.    ..+...|.++... ++++|+.+|.+|+++...      -...+..
T Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~   81 (228)
T 4i17_A           12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LANAYIG   81 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hHHHHHH
Confidence            566777788889999999999987753 222    2334467777665 599999999999976433      2456788


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~~a~e-~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      .|.++...++|++|++.|+++.+..-... .....+..+...+.+.+..|+...|...|++.
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  143 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA  143 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999987764432 22222333333446667788988899999874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.73  E-value=0.0014  Score=60.79  Aligned_cols=155  Identities=11%  Similarity=0.069  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+.+++.+|..+|.++.......    ..++...+.++... ++++|+++|+++.++....      ...+...
T Consensus        62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~  131 (243)
T 2q7f_A           62 NFANLLSSVNELERALAFYDKALELDSSA----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYML  131 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            45667777777888888888887664333    23455666666654 5999999999999986544      2457778


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccc
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSF  477 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~  477 (535)
                      |.++...++|++|+++|++..+..... ..+..     +  +.+.+..|+...|...|++......+             
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----l--~~~~~~~~~~~~A~~~~~~~~~~~~~-------------  191 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQ-----F--GMCLANEGMLDEALSQFAAVTEQDPG-------------  191 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH-----H--HHHHHHHTCCHHHHHHHHHHHHHCTT-------------
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHH-----H--HHHHHHcCCHHHHHHHHHHHHHhCcc-------------
Confidence            889999999999999999987664322 11221     2  23344556666688888863321100             


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        478 SLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       478 ~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                  .    ....+..+.|++..||...|...+++
T Consensus       192 ------------~----~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          192 ------------H----ADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             ------------C----HHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             ------------c----HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                        0    11235668889999999999999987

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.72  E-value=0.00069  Score=58.51  Aligned_cols=95  Identities=19%  Similarity=0.228  Sum_probs=73.6

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHH
Q psy11025        324 LYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARM  401 (535)
Q Consensus       324 lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e-gr~~~Aa~~l~kaAel  401 (535)
                      .|-+.+++.+|..+|.+|.++.-+.    +.+|..-|.+|.+. ++++|+++|.+|+++.... .....-++++...|.+
T Consensus        17 ~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~   92 (127)
T 4gcn_A           17 AAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA   92 (127)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            3444556889999999988764333    34577777777765 4999999999999996544 3456677889999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHH
Q psy11025        402 CVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       402 ~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      +...++|++|++.|+++....
T Consensus        93 ~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           93 FQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHHHhhC
Confidence            999999999999999876543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.71  E-value=0.00056  Score=77.37  Aligned_cols=154  Identities=12%  Similarity=0.101  Sum_probs=109.2

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|.+.|++.+|..+|.+|.++.-+.    +.+|..-|.+|.+.+ +++|+++|++|+++--..      ++.+...|
T Consensus        15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~nLg   84 (723)
T 4gyw_A           15 LANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------ADAYSNMG   84 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence            4667777788999999999998764333    335777788888765 999999999999985433      45678889


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccc
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFS  478 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~  478 (535)
                      .++...++|++|++.|+++.++.-. .+.+.+.+       .++...|+...|+..|++.-..  +|.+           
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg-------~~~~~~g~~~eAi~~~~~Al~l--~P~~-----------  144 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA-------SIHKDSGNIPEAIASYRTALKL--KPDF-----------  144 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHH--CSCC-----------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHh--CCCC-----------
Confidence            9999999999999999998766422 22233333       4455678888899999873331  1111           


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        479 LGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       479 L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                  ..    .....+.|+...||...|...+++
T Consensus       145 ------------~~----a~~~L~~~l~~~g~~~~A~~~~~k  170 (723)
T 4gyw_A          145 ------------PD----AYCNLAHCLQIVCDWTDYDERMKK  170 (723)
T ss_dssp             ------------HH----HHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             ------------hH----HHhhhhhHHHhcccHHHHHHHHHH
Confidence                        11    124456777778888888777765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.70  E-value=0.0015  Score=59.50  Aligned_cols=90  Identities=13%  Similarity=0.102  Sum_probs=51.1

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|...+++.+|..+|.++.......    ..++...+.++... ++++|+++|.++.++....      ...+...|
T Consensus        14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~   83 (225)
T 2vq2_A           14 LAMEYMRGQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------AEINNNYG   83 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHH
Confidence            4555556666777777777766543322    22344445555443 3667777777766654322      23445556


Q ss_pred             HHHHHh-hhHHHHHHHHHHHHH
Q psy11025        400 RMCVRV-KEFDKAADLIRQEIG  420 (535)
Q Consensus       400 el~e~~-~~y~~Aie~ye~~~~  420 (535)
                      .++... +++++|+++|++..+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHc
Confidence            666666 666666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.68  E-value=0.0013  Score=61.67  Aligned_cols=154  Identities=14%  Similarity=0.094  Sum_probs=105.3

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +.+|...+++.+|..+|.++.......    +.++...+.++... ++++|+++|+++.++....      ...+...|.
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~  113 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN------ARVLNNYGG  113 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHH
Confidence            444555566888999999887654333    34566677777665 5999999999999985433      356778899


Q ss_pred             HHHHhhhHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccc
Q psy11025        401 MCVRVKEFDKAADLIRQEIG--YHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFS  478 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~--~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~  478 (535)
                      ++...++|++|+++|++...  ....   .   .......+.+.+..|+...|...|++.......              
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------------  173 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPE---R---SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--------------  173 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTT---H---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------------
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcc---c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--------------
Confidence            99999999999999999876  1111   1   111122234556678888899998873331110              


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        479 LGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       479 L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                 .    ....+..+.+++..||...|...+++
T Consensus       174 -----------~----~~~~~~la~~~~~~g~~~~A~~~~~~  200 (252)
T 2ho1_A          174 -----------Q----PSVALEMADLLYKEREYVPARQYYDL  200 (252)
T ss_dssp             -----------C----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----------c----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                       0    11235567788889999999999887

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.68  E-value=0.00027  Score=69.44  Aligned_cols=136  Identities=11%  Similarity=-0.010  Sum_probs=93.0

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED-NYKQAAEYISR  397 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg-r~~~Aa~~l~k  397 (535)
                      +.+|..-+++.+|...|.+|.....+.  ....+.+|...+.+|... ++++|+.+|++|.+++...+ .......++..
T Consensus       122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            344445556778888888877655332  223567788888888775 49999999999999976653 34455589999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAA-EKAFKE  457 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA-~~~~e~  457 (535)
                      +|.++...++|++|+++|+++.+.....+.....+.++...+.|....|+...| ...|++
T Consensus       202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            999999999999999999999887654221111122222233455566666557 555665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.67  E-value=0.002  Score=63.85  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=19.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHH
Q psy11025        498 AVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       498 ~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ....+.|++..|+...|...+++
T Consensus       288 ~~~l~~~~~~~g~~~~A~~~~~~  310 (368)
T 1fch_A          288 RYNLGISCINLGAHREAVEHFLE  310 (368)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHH
Confidence            35678888899999999988887

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.65  E-value=0.0011  Score=57.11  Aligned_cols=101  Identities=12%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHH
Q psy11025        351 AASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHL  428 (535)
Q Consensus       351 ~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~  428 (535)
                      ++|.++...++.+-+ .++++|+++|.+|+++....      ..++...|.++...++|++|++.|+++.++.... ..+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            455666666666554 56999999999999985443      4578889999999999999999999998775442 223


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        429 LAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       429 ~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ...++.+..++.+....++...|+..|++
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~k  108 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHR  108 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33444444456777788999889999986

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.62  E-value=0.0024  Score=65.29  Aligned_cols=186  Identities=14%  Similarity=0.085  Sum_probs=112.2

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+..|.+.+++.+|...|.++......+    +.++...+.++... ++++|+.+|.+|+++....      ...+...|
T Consensus        32 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~  101 (450)
T 2y4t_A           32 LGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF------TAARLQRG  101 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------HHHHHHHH
Confidence            4556666777899999999987653222    34566666666654 5999999999999885333      45677888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHh----hHHHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccc
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQES----EHLLAIGRL-----AVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCES  470 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~----e~~~~a~rl-----~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~s  470 (535)
                      .++...|+|++|+++|++..+.....    ......+.+     .+....+.+..|+...|...|++......+  ....
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~  179 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW--DAEL  179 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH
Confidence            89999999999999999886532211    111111110     111234455567777788888875442221  1100


Q ss_pred             ccc--cccccccccchhhhhhhHHHH-------HHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        471 GSS--SFSFSLGKAGYHQESEHLLAI-------GRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       471 re~--~~l~~L~l~ay~~~~~~~~~~-------~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ...  .+...  ...+.+....|...       .......+.++...||...|...+++
T Consensus       180 ~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  236 (450)
T 2y4t_A          180 RELRAECFIK--EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE  236 (450)
T ss_dssp             HHHHHHHHHH--TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            000  00000  12222322333322       23346678889999999999999887

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.61  E-value=0.0019  Score=64.38  Aligned_cols=80  Identities=15%  Similarity=0.102  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcC
Q psy11025        368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARG  446 (535)
Q Consensus       368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~  446 (535)
                      +++|+++|++|.++......    ...+...|.++...|+|++|+++|++..+..... ..+..       ++.+....|
T Consensus       193 ~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------l~~~~~~~g  261 (365)
T 4eqf_A          193 LEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR-------LGATLANGD  261 (365)
T ss_dssp             HHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcC
Confidence            66677777777666433211    2345556677777788888888888876553221 11111       123344455


Q ss_pred             CHHHHHHHHHHh
Q psy11025        447 DTVAAEKAFKEW  458 (535)
Q Consensus       447 D~vaA~~~~e~~  458 (535)
                      +...|...|++.
T Consensus       262 ~~~~A~~~~~~a  273 (365)
T 4eqf_A          262 RSEEAVEAYTRA  273 (365)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            666666666653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.58  E-value=0.0012  Score=78.97  Aligned_cols=168  Identities=15%  Similarity=0.139  Sum_probs=101.2

Q ss_pred             CHHHHHHHHHHHhchHHHHHHHH-------HHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcH
Q psy11025        317 KPDAALTLYSRAADVAHGEDNYK-------QAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  388 (535)
Q Consensus       317 K~D~AA~lYekAA~~~eAa~af~-------kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~  388 (535)
                      .+|+|..+|+|++.+.+|...+.       +|.+.+.+...  ..++-+-|+++++.+ .++|+++|.+|       +. 
T Consensus      1064 lyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD- 1133 (1630)
T 1xi4_A         1064 LFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD- 1133 (1630)
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC-
Confidence            67899999999998776655554       44444433211  345678889998876 99999999987       11 


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q psy11025        389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-------EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC  461 (535)
Q Consensus       389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-------e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~  461 (535)
                         ...+.++|..+.+.|+|++|+++|..+.+.-...       -.+.+..++-  .+-..+.....    ..|..+|.+
T Consensus      1134 ---~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rle--ele~fI~~~n~----ad~~~iGd~ 1204 (1630)
T 1xi4_A         1134 ---PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA--ELEEFINGPNN----AHIQQVGDR 1204 (1630)
T ss_pred             ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHH--HHHHHHhCCCH----HHHHHHHHH
Confidence               2355668999999999999999998865433110       0111111111  00011111111    122334444


Q ss_pred             cCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        462 CEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       462 ~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      |.+                +..|.+...-|..++. +.+++.|++..|++-.|-.++.+
T Consensus      1205 le~----------------eg~YeeA~~~Y~kA~n-y~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A         1205 CYD----------------EKMYDAAKLLYNNVSN-FGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred             HHh----------------cCCHHHHHHHHHhhhH-HHHHHHHHHHhCCHHHHHHHHHH
Confidence            433                3345555555666554 47777788777888887777654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.58  E-value=0.0025  Score=57.97  Aligned_cols=166  Identities=12%  Similarity=0.097  Sum_probs=103.9

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      -+.+|...+++.+|...|.++.......    ..++...+.++... + +++|+.+|+++.+ .   +....-...+...
T Consensus        48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~---~~~~~~~~~~~~l  119 (225)
T 2vq2_A           48 RAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA-D---PTYPTPYIANLNK  119 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S---TTCSCHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C---cCCcchHHHHHHH
Confidence            3455555566677777777776654332    22455666677665 4 9999999999988 1   1112234567788


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC-CCCcccccccccc
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE-APERCESGSSSFS  476 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~-~~~f~~sre~~~l  476 (535)
                      |.++...+++++|+++|++..+..... ..+..       .+.+.+..|+...|...|++...... +            
T Consensus       120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~~~~~~~~~------------  180 (225)
T 2vq2_A          120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE-------LARTKMLAGQLGDADYYFKKYQSRVEVL------------  180 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH-------HHHHHHHHTCHHHHHHHHHHHHHHHCSC------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCCCC------------
Confidence            899999999999999999987654332 11111       22445566888889999887433111 0            


Q ss_pred             ccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHh-cCCCCchhh
Q psy11025        477 FSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW-GNCCEAPEI  530 (535)
Q Consensus       477 ~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~~-~~F~~s~E~  530 (535)
                                   ...    .....+.++...|+..+|...++.+ -.+.++.+.
T Consensus       181 -------------~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  218 (225)
T 2vq2_A          181 -------------QAD----DLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL  218 (225)
T ss_dssp             -------------CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             -------------CHH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence                         001    1134466777889999998887763 234444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.57  E-value=0.0031  Score=58.77  Aligned_cols=154  Identities=12%  Similarity=0.103  Sum_probs=95.6

Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHhCHHHHH---------------HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC
Q psy11025        323 TLYSRAADVAHGEDNYKQAAEYISRNREAAS---------------TVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED  386 (535)
Q Consensus       323 ~lYekAA~~~eAa~af~kAA~~y~~~~~~AA---------------~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg  386 (535)
                      ..+.+.+++.+|..+|.+|....   |+.+.               .....-|.++... ++++|+.+|++|+++.-.. 
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-   87 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN-   87 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Confidence            34445577888888888877653   33221               1122266777665 5999999999999986554 


Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q psy11025        387 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP  465 (535)
Q Consensus       387 r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~  465 (535)
                           ...+...|.++...|+|++|++.|+++.++.-.. ..+...+.+     ......++...+...|.+..    . 
T Consensus        88 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~-----~~~~~~~~~~~~~~~~~~~~----~-  152 (208)
T 3urz_A           88 -----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY-----YYLTAEQEKKKLETDYKKLS----S-  152 (208)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHC-------C-
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHh----C-
Confidence                 3677888999999999999999999997664322 222233322     22222223322333333210    0 


Q ss_pred             CccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        466 ERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       466 ~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                     ..        .  ........|++++..|++..|...|++
T Consensus       153 ---------------~~--------~--~~~a~~~~g~~~~~~~~~~~A~~~~~~  182 (208)
T 3urz_A          153 ---------------PT--------K--MQYARYRDGLSKLFTTRYEKARNSLQK  182 (208)
T ss_dssp             ---------------CC--------H--HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ---------------CC--------c--hhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                           00        0  111234568889999999999999998

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.57  E-value=0.0027  Score=61.40  Aligned_cols=162  Identities=12%  Similarity=-0.003  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|...+++.+|..+|.+|.........    .+...+.++... ++++|+++|++|.++....      ...+...
T Consensus       130 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l  199 (330)
T 3hym_B          130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHL----PMLYIGLEYGLTNNSKLAERFFSQALSIAPED------PFVMHEV  199 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH----HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhccccHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC------hHHHHHH
Confidence            4566777777788888888888776544322    244456666654 4899999999998876443      3567788


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccc
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQESEH---LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSF  475 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~---~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~  475 (535)
                      |.++...++|++|+++|++..+.......   ..........++.+....|+...|...|++......+           
T Consensus       200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----------  268 (330)
T 3hym_B          200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-----------  268 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-----------
Confidence            88888899999999999998776532110   0000011111224455677887888888874331111           


Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        476 SFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       476 l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                        ........+.|++..|+...|...+++
T Consensus       269 ------------------~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (330)
T 3hym_B          269 ------------------NASTYSAIGYIHSLMGNFENAVDYFHT  295 (330)
T ss_dssp             ------------------CSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred             ------------------chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                              011235567888888999999888887

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.57  E-value=0.0014  Score=61.67  Aligned_cols=137  Identities=9%  Similarity=-0.012  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh------------------C-CHHHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE------------------L-KSDAALTLYSRAAD  380 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek------------------~-~~~eAie~y~kAae  380 (535)
                      .-+.+|.+.+++.+|..+|.++...+-+++. +..++...+.++.+                  . ++++|+..|+++++
T Consensus        46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  124 (225)
T 2yhc_A           46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR  124 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH
Confidence            3456677777788888888888776644332 23344444444432                  2 48999999999999


Q ss_pred             HHhcCCcHHHHHHH-----------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHH
Q psy11025        381 VAHGEDNYKQAAEY-----------ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTV  449 (535)
Q Consensus       381 ly~~egr~~~Aa~~-----------l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~v  449 (535)
                      .|-.......|...           ...+|.++...++|.+|+..|+++.+.+-.......+.   ...+.|+...|+..
T Consensus       125 ~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~---~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          125 GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDAL---PLMENAYRQMQMNA  201 (225)
T ss_dssp             TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHH---HHHHHHHHHTTCHH
T ss_pred             HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHH---HHHHHHHHHcCCcH
Confidence            98777654443222           13567788889999999999999988775543322221   22235677788988


Q ss_pred             HHHHHHHHhhh
Q psy11025        450 AAEKAFKEWGN  460 (535)
Q Consensus       450 aA~~~~e~~~~  460 (535)
                      .|...|+.+..
T Consensus       202 ~A~~~~~~l~~  212 (225)
T 2yhc_A          202 QAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            89999987544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.57  E-value=0.0033  Score=60.67  Aligned_cols=22  Identities=9%  Similarity=-0.029  Sum_probs=19.1

Q ss_pred             HHHHHHHhccCCHHHHHHHHHH
Q psy11025        499 VALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       499 l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ...+.|++..||...|...+++
T Consensus       244 ~~l~~~~~~~g~~~~A~~~~~~  265 (327)
T 3cv0_A          244 YNMAVSYSNMSQYDLAAKQLVR  265 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHH
Confidence            5668889999999999999987

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.57  E-value=0.0025  Score=55.78  Aligned_cols=155  Identities=15%  Similarity=0.040  Sum_probs=103.2

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|...+++.+|...|.++.......    ..++...+.++... ++++|+.+|.++.++....      ..++...|
T Consensus        14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a   83 (186)
T 3as5_A           14 KGISHAKAGRYSQAVMLLEQVYDADAFD----VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN------VKVATVLG   83 (186)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Confidence            3445555566667777666654432222    34566667776654 5999999999999885433      35677888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccc
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSL  479 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L  479 (535)
                      .++...+++++|+++|++.........      ......+.+....|+...|...|++......+               
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------  142 (186)
T 3as5_A           84 LTYVQVQKYDLAVPLLIKVAEANPINF------NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---------------  142 (186)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcHhH------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---------------
Confidence            999999999999999999876643221      11111224455678888899998874331110               


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        480 GKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       480 ~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                .    .......+.|++..||...|...+++
T Consensus       143 ----------~----~~~~~~la~~~~~~~~~~~A~~~~~~  169 (186)
T 3as5_A          143 ----------E----GKVHRAIAFSYEQMGRHEEALPHFKK  169 (186)
T ss_dssp             ----------C----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------c----hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                      0    12235668888999999999999887

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.52  E-value=0.0082  Score=58.41  Aligned_cols=59  Identities=14%  Similarity=0.099  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        395 ISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       395 l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      +...|.++...++|++|++.|++..+..... ..+..       .+.+....|+...|...|++...
T Consensus       157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK-------ISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHH-------HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHh
Confidence            3344555555666666666666654432111 11111       22334455676667777776433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.50  E-value=0.0023  Score=65.31  Aligned_cols=165  Identities=9%  Similarity=0.003  Sum_probs=95.9

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHH-----
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEY-----  394 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~-----  394 (535)
                      -+.+|.+.+++.+|...|.++......+    ..++...+.++... ++++|+.+|+++..+.............     
T Consensus       183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          183 RAECFIKEGEPRKAISDLKAASKLKNDN----TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHCSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            3444444455556666666655543222    23455555666554 4888888888888765444222211111     


Q ss_pred             -HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccc
Q psy11025        395 -ISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSS  473 (535)
Q Consensus       395 -l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~  473 (535)
                       +...|.++...++|++|+++|++..+.........  ..+....+.+....|+...|...|++......+         
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---------  327 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT--VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD---------  327 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------
Confidence             13337777888999999999998876543211111  111222234555677887788888763221000         


Q ss_pred             cccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        474 SFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       474 ~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                          .....+..+.+++..||.-.|...+++
T Consensus       328 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~  354 (450)
T 2y4t_A          328 --------------------NVNALKDRAEAYLIEEMYDEAIQDYET  354 (450)
T ss_dssp             --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                                012235667888889999999999987

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.50  E-value=0.0011  Score=61.41  Aligned_cols=155  Identities=15%  Similarity=0.120  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+.+++.+|...|.++.......    +..+...+.++... ++++|+++|+++.++....      ...+...
T Consensus        28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l   97 (243)
T 2q7f_A           28 QQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALELDSSA------ATAYYGA   97 (243)
T ss_dssp             --------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------hHHHHHH
Confidence            34555666677888888888876533222    34566667777655 5999999999999985443      4567788


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccc
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSF  477 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~  477 (535)
                      |.++...++|++|+++|++..+..... ..+..       .+.+.+..|+...|...|++......+             
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------  157 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM-------LGTVLVKLEQPKLALPYLQRAVELNEN-------------  157 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHH-------HHHHHHHTSCHHHHHHHHHHHHHHCTT-------------
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHhccHHHHHHHHHHHHHhCCc-------------
Confidence            999999999999999999987665322 11222       234566678888899998874331111             


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        478 SLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       478 ~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                  .    .......+.+++..|+...|...+++
T Consensus       158 ------------~----~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (243)
T 2q7f_A          158 ------------D----TEARFQFGMCLANEGMLDEALSQFAA  184 (243)
T ss_dssp             ------------C----HHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             ------------c----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                        0    11234567788888999988888876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.49  E-value=0.0014  Score=62.75  Aligned_cols=139  Identities=10%  Similarity=0.046  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh--------C-CHHHHHHHHHHHHHHHhcCCcHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE--------L-KSDAALTLYSRAADVAHGEDNYKQ  390 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek--------~-~~~eAie~y~kAaely~~egr~~~  390 (535)
                      .-+.+|.+.+++.+|...|.++...+-+++. ...++...+.++..        . ++++|+.+|+++++.+-.......
T Consensus        57 ~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  135 (261)
T 3qky_A           57 YLARAYYQNKEYLLAASEYERFIQIYQIDPR-VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDD  135 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHH
Confidence            4566666677778888888888776544332 34567777777765        4 499999999999999877755444


Q ss_pred             HHHHH-----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------hcCCHHHH
Q psy11025        391 AAEYI-----------SRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL--------ARGDTVAA  451 (535)
Q Consensus       391 Aa~~l-----------~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L--------~~~D~vaA  451 (535)
                      +...+           ..+|.++...|+|++|+..|+++.+.+-.......+ ...++.+...+        ..++...|
T Consensus       136 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a-~~~l~~~~~~~g~~~~~~~~~~~~~~A  214 (261)
T 3qky_A          136 ATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDA-LVGAMRAYIAYAEQSVRARQPERYRRA  214 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH-HHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHhcccchhhcccchHHHH
Confidence            43332           677889999999999999999998776443221111 11122223333        12555668


Q ss_pred             HHHHHHhhh
Q psy11025        452 EKAFKEWGN  460 (535)
Q Consensus       452 ~~~~e~~~~  460 (535)
                      ...|+++..
T Consensus       215 ~~~~~~~~~  223 (261)
T 3qky_A          215 VELYERLLQ  223 (261)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.47  E-value=0.0025  Score=60.27  Aligned_cols=186  Identities=14%  Similarity=0.053  Sum_probs=103.5

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|.+.+++.+|..+|.++.. ...++...+.+|...+.++...+ +++|+++|++|+++.....      ..+...|
T Consensus        43 l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~  115 (272)
T 3u4t_A           43 RAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------DMYGQIG  115 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------HHHHHHH
Confidence            34466666667778777777766 22233334566777777777654 8999999999988755442      4677888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccc
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFS  478 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~  478 (535)
                      .++...++|++|++.|+++.+..... ..+...+.      .+. ..++...|...|++......+...+-..-+.+...
T Consensus       116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~------~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  188 (272)
T 3u4t_A          116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ------AYY-YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA  188 (272)
T ss_dssp             HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHH------HHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHH------HHH-HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            88888888998888888876542111 11111110      112 22366667666666433222110000000000000


Q ss_pred             cc--------ccchhhhhhh--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        479 LG--------KAGYHQESEH--------LLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       479 L~--------l~ay~~~~~~--------~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ++        +..|.+.+..        ...........+.|++..||...|...+++
T Consensus       189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  246 (272)
T 3u4t_A          189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN  246 (272)
T ss_dssp             HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            00        0011111111        111223446678999999999999999987

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.38  E-value=0.0038  Score=54.15  Aligned_cols=126  Identities=13%  Similarity=0.003  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|...+++.+|...|.+|......+    +.++...|.++... ++++|+++|.+|+++....      ...+...
T Consensus        18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~   87 (166)
T 1a17_A           18 TQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKGYYRR   87 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHH
Confidence            34555666677889999999988765433    34566667777665 5999999999999986443      3567888


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      |.++...++|++|+++|++............    ..+..+...+..++...|...+++..
T Consensus        88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           88 AASNMALGKFRAALRDYETVVKVKPHDKDAK----MKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHHHHHHHHHHHHcccchH
Confidence            9999999999999999999876653322111    11112223444566666888877643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.003  Score=58.72  Aligned_cols=135  Identities=10%  Similarity=-0.007  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH------HhcCCcHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNR---EAASTVLEKGAKSLEELK-SDAALTLYSRAADV------AHGEDNYK  389 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~---~~AA~~l~~AAk~~ek~~-~~eAie~y~kAael------y~~egr~~  389 (535)
                      .-+.+|...+++.+|..+|.++.......+   ..-+.++...+.++...+ +++|+++|+++..+      +...|+..
T Consensus        43 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  122 (258)
T 3uq3_A           43 NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE  122 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHH
Confidence            345556666667788888888877765431   123566777777777654 88888888888884      22333333


Q ss_pred             HHH--------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy11025        390 QAA--------------EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAF  455 (535)
Q Consensus       390 ~Aa--------------~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~  455 (535)
                      .|.              ..+...|.++...++|++|++.|++..+......      ......+.+.+..|+...|...|
T Consensus       123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHhCCHHHHHHHH
Confidence            333              3445566677778999999999999876643321      11122234566678888899999


Q ss_pred             HHhhh
Q psy11025        456 KEWGN  460 (535)
Q Consensus       456 e~~~~  460 (535)
                      ++.-.
T Consensus       197 ~~al~  201 (258)
T 3uq3_A          197 NKAIE  201 (258)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.35  E-value=0.0081  Score=60.41  Aligned_cols=20  Identities=15%  Similarity=0.373  Sum_probs=10.4

Q ss_pred             HHHHHhccCCHHHHHHHHHH
Q psy11025        501 LVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       501 a~lc~L~~gD~V~A~~a~~~  520 (535)
                      .+.++...|+...|...+++
T Consensus       311 l~~~~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          311 LANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            34445555555555555544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.33  E-value=0.0055  Score=50.44  Aligned_cols=99  Identities=17%  Similarity=0.222  Sum_probs=76.7

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGE-DNYKQAAEYISRA  398 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~e-gr~~~Aa~~l~ka  398 (535)
                      -+..|...+++.+|...|.++......+    ..++...|.++.. .++++|+.+|.+++++.... +....-..++...
T Consensus        10 l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A           10 LGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            4566677778899999999988765333    2356666666655 45999999999999998654 4444447788899


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      |.++...++|++|++.|++..+...
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCC
Confidence            9999999999999999999877643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.32  E-value=0.01  Score=57.18  Aligned_cols=89  Identities=10%  Similarity=0.003  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|...+++.+|...|.++.......    +.++...+.++... ++++|+.+|.++.++....      ...+...
T Consensus        26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l   95 (327)
T 3cv0_A           26 EEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAAL   95 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------HHHHHHH
Confidence            45666777777888888888876543222    22344445555543 4777777777776653221      2234444


Q ss_pred             HHHHHHhhhHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQE  418 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~  418 (535)
                      |.++...+++++|++.|++.
T Consensus        96 a~~~~~~~~~~~A~~~~~~~  115 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAW  115 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            44555555555555555444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.30  E-value=0.0025  Score=55.00  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=58.8

Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q psy11025        323 TLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARM  401 (535)
Q Consensus       323 ~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel  401 (535)
                      ..|-+.+++.+|.++|.+|....-.+    +.+|..-|.++.+.+ +++|++.|.+|+++-...      ...+...|.+
T Consensus        21 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~   90 (126)
T 4gco_A           21 NEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF------IKGYIRKAAC   90 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh------hHHHHHHHHH
Confidence            33444556777888887776553222    234666666666654 888888888888773332      2456677778


Q ss_pred             HHHhhhHHHHHHHHHHHHHH
Q psy11025        402 CVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       402 ~e~~~~y~~Aie~ye~~~~~  421 (535)
                      +...|+|++|++.|+++.++
T Consensus        91 ~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            88888888888888877544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.29  E-value=0.0076  Score=58.15  Aligned_cols=23  Identities=13%  Similarity=-0.126  Sum_probs=19.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHH
Q psy11025        498 AVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       498 ~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      ....+.|++..|+...|...+++
T Consensus       239 ~~~la~~~~~~g~~~~A~~~~~~  261 (330)
T 3hym_B          239 LNNLGHVCRKLKKYAEALDYHRQ  261 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH
Confidence            45678888899999999988887

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.28  E-value=0.0052  Score=60.77  Aligned_cols=166  Identities=12%  Similarity=0.009  Sum_probs=109.1

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      .+.+| ..+++.+|...|.++........  -+.++...+.++... ++++|+.+|++|.++....      ...+...|
T Consensus       188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~  258 (368)
T 1fch_A          188 LGSLL-SDSLFLEVKELFLAAVRLDPTSI--DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLG  258 (368)
T ss_dssp             THHHH-HHHHHHHHHHHHHHHHHHSTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHh-hcccHHHHHHHHHHHHHhCcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHH
Confidence            45566 77889999999999877643311  234566677777765 5999999999999985443      35778899


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccc
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFS  478 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~  478 (535)
                      .++...|+|++|++.|++..+..... ..+..       .+.+.+..|+...|...|++......+..  .. ...    
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~-~~~----  324 (368)
T 1fch_A          259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYN-------LGISCINLGAHREAVEHFLEALNMQRKSR--GP-RGE----  324 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHHHTCHHHHHHHHHHHHHHHHTC-------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHHhCCCCC--Cc-ccc----
Confidence            99999999999999999987654321 12222       23455667888889999987433211100  00 000    


Q ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        479 LGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       479 L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                        ..         ..........+.|+...|+.-.|...+.+
T Consensus       325 --~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          325 --GG---------AMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             --CC---------CCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             --cc---------chhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence              00         00012235567888888999999888765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.24  E-value=0.011  Score=48.46  Aligned_cols=122  Identities=16%  Similarity=0.166  Sum_probs=85.5

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|...+++.+|...|.++.......    ...+...+.++.. .++++|+.+|.++..+....      ...+...|
T Consensus         7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~   76 (136)
T 2fo7_A            7 LGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLG   76 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hHHHHHHH
Confidence            4667778888999999999987654333    2345555666654 46999999999999875433      34566788


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      .++...++|++|+++|++.........      ......+.+....|+...|...|++.
T Consensus        77 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           77 NAYYKQGDYDEAIEYYQKALELDPRSA------EAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            899999999999999999876543221      11111234556678888898888763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.21  E-value=0.0094  Score=51.96  Aligned_cols=125  Identities=17%  Similarity=0.146  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|...+++.+|...|.++........    .++...+.++.. .++++|+++|.++..+....      ...+...
T Consensus        47 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~  116 (186)
T 3as5_A           47 HLGIAYVKTGAVDRGTELLERSLADAPDNV----KVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRL  116 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHH
Confidence            567777788888999999988876643332    345555666655 45999999999999985443      3567788


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      |.++...+++++|+++|++..+......      ......+.+....|+...|...|++...
T Consensus       117 a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          117 GVALDNLGRFDEAIDSFKIALGLRPNEG------KVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCccch------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999876643221      1111223456667888889999887443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.19  E-value=0.005  Score=51.44  Aligned_cols=101  Identities=9%  Similarity=-0.084  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+.+++.+|...|.++...+-.++. +..++...+.++... ++++|+.+|.+++..+.....   ....+...
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~l   82 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHHHHHH
Confidence            3456777788899999999998776543332 345666677777665 599999999999998765532   45677888


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      |.++...|++++|++.|++....+-.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            99999999999999999998776643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.17  E-value=0.0054  Score=57.97  Aligned_cols=125  Identities=10%  Similarity=0.012  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-|.+|.+.+++.+|...|.++......+..    ++...+.++... ++++|+++|.+|++ ..  +.....+.++...
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~l   80 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPY----IYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKSADFEYY   80 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTCCCST----THHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHHHHHHHH
Confidence            4567777788899999999998765433322    355556666654 59999999999998 32  3334456778899


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      |.++...++|++|++.|+++.+..... ..+...       +.++...|+...|...|++.
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~a  134 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI-------GSYFYNKGNFPLAIQYMEKQ  134 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH-------HHHHHHTTCHHHHHHHHGGG
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHH-------HHHHHHccCHHHHHHHHHHH
Confidence            999999999999999999997764332 222222       34566778888899999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.15  E-value=0.0096  Score=59.86  Aligned_cols=111  Identities=18%  Similarity=0.187  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcC
Q psy11025        368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARG  446 (535)
Q Consensus       368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~  446 (535)
                      +++|+++|++|+++....      ...+...|.++...|++++|++.|++..+..-.. ..+..       .+.+....|
T Consensus       253 ~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------l~~~~~~~g  319 (388)
T 1w3b_A          253 IDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN-------LANIKREQG  319 (388)
T ss_dssp             HHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH-------HHHHHHHcC
Confidence            566666666665542221      1234556666667777777777777776553221 11111       123445567


Q ss_pred             CHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        447 DTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       447 D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      +...|...|++.-..  +|.                           ........+.++...|+...|...+++
T Consensus       320 ~~~~A~~~~~~al~~--~p~---------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (388)
T 1w3b_A          320 NIEEAVRLYRKALEV--FPE---------------------------FAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             CHHHHHHHHHHHTTS--CTT---------------------------CHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc--CCC---------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            777777777753221  110                           011234557788889999999999987

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.14  E-value=0.0045  Score=54.86  Aligned_cols=95  Identities=15%  Similarity=0.070  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+.+++.+|..+|.+|....-.+    +.++...+.+|... ++++|+.+|.+|+++....      ...+...
T Consensus        16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l   85 (164)
T 3sz7_A           16 SEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY------SKAWSRL   85 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            34555666677899999999988765443    33566777777765 4999999999999986543      4677888


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      |.++...++|++|++.|+++.++.-.
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999998776543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0049  Score=51.84  Aligned_cols=92  Identities=15%  Similarity=0.127  Sum_probs=64.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+..|.+.+++.+|..+|.+|....-.+.    .++..-|.++... ++++|+.+|.+|+++....      ...+...|
T Consensus        10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg   79 (126)
T 3upv_A           10 EGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VRAYIRKA   79 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHH
Confidence            34455556667888888888876543332    3566666666655 4888888888888875433      34677778


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      .++...|+|++|++.|+++.+..
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhC
Confidence            88888888888888888876654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.13  E-value=0.011  Score=52.85  Aligned_cols=128  Identities=16%  Similarity=0.084  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHHhch-HHHHHHHHHHHHHHHh--CHHHHHH--------------HHHHHHHHHHh-CCHHHHHHHHHHH
Q psy11025        317 KPDAALTLYSRAADV-AHGEDNYKQAAEYISR--NREAAST--------------VLEKGAKSLEE-LKSDAALTLYSRA  378 (535)
Q Consensus       317 K~D~AA~lYekAA~~-~eAa~af~kAA~~y~~--~~~~AA~--------------~l~~AAk~~ek-~~~~eAie~y~kA  378 (535)
                      ++++|.++|++|=.. ..-..++..-+.+|.+  ..+.|..              ++...+.++.. .+++.|++.+.+|
T Consensus        20 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a   99 (184)
T 3vtx_A           20 DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRA   99 (184)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            566777777776431 1222333344444432  1122222              23333444444 4589999999999


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        379 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       379 aely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ..+....      ...+...|.++...|+|++|++.|++..+..-.. ..+...       +.++...|+...|...|++
T Consensus       100 ~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A          100 IALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSI-------GLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             HHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHH
T ss_pred             HHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHH-------HHHHHHCCCHHHHHHHHHH
Confidence            9886554      2456677889999999999999999987664321 222222       3556677888889999987

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.13  E-value=0.0078  Score=63.97  Aligned_cols=119  Identities=10%  Similarity=-0.047  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHhc
Q psy11025        367 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLAR  445 (535)
Q Consensus       367 ~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~-~~~a~rl~la~il~~L~~  445 (535)
                      ++++|+++|.++.++....      ...+..++.++.+.|++++|+++|++..+....... .......+..++.+....
T Consensus       456 ~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  529 (597)
T 2xpi_A          456 NILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL  529 (597)
T ss_dssp             CHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence            3566666666665543321      133555666777778888888888887665432100 000011111222344456


Q ss_pred             CCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        446 GDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       446 ~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      |+...|...|++......+                             -.......+.++...|+.-.|...+++
T Consensus       530 g~~~~A~~~~~~~~~~~p~-----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  575 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLLSTN-----------------------------DANVHTAIALVYLHKKIPGLAITHLHE  575 (597)
T ss_dssp             TCHHHHHHHHHHHHHHSSC-----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCC-----------------------------ChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            7777788888763221100                             011234557788889999999999987

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.11  E-value=0.0048  Score=69.76  Aligned_cols=125  Identities=17%  Similarity=0.224  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHHHhc---------------------hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHH
Q psy11025        317 KPDAALTLYSRAAD---------------------VAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTL  374 (535)
Q Consensus       317 K~D~AA~lYekAA~---------------------~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~  374 (535)
                      ++|+|..+|++|-.                     +.+|..+|.+|..+.   ++. +.+|..-+.+|.+.+ +++|+++
T Consensus        24 ~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~-~~a~~nLg~~l~~~g~~~~A~~~   99 (723)
T 4gyw_A           24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTF-ADAYSNMGNTLKEMQDVQGALQC   99 (723)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence            66778888777653                     345555555555442   221 345666777777764 9999999


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy11025        375 YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEK  453 (535)
Q Consensus       375 y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~  453 (535)
                      |++|+++--..      +..+...|.++...|+|++|++.|+++.++.-. .+.+.+.+     .++..++.++.  |..
T Consensus       100 ~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~-----~~l~~~g~~~~--A~~  166 (723)
T 4gyw_A          100 YTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA-----HCLQIVCDWTD--YDE  166 (723)
T ss_dssp             HHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH-----HHHHHTTCCTT--HHH
T ss_pred             HHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh-----hHHHhcccHHH--HHH
Confidence            99999984332      456788899999999999999999998765422 12222222     22444544444  777


Q ss_pred             HHHHh
Q psy11025        454 AFKEW  458 (535)
Q Consensus       454 ~~e~~  458 (535)
                      .|++.
T Consensus       167 ~~~ka  171 (723)
T 4gyw_A          167 RMKKL  171 (723)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77663

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.11  E-value=0.0059  Score=63.74  Aligned_cols=157  Identities=15%  Similarity=0.092  Sum_probs=89.3

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q psy11025        325 YSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV  403 (535)
Q Consensus       325 YekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e  403 (535)
                      |.+.+++.+|...|.++........    .++...+.++... ++++|+++|.++.++.....      ..+...|.++.
T Consensus       320 ~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~  389 (537)
T 3fp2_A          320 YFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP------EVPTFFAEILT  389 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHH
Confidence            3333334455555555544322221    2344455555554 48888888888888754442      35556688888


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhhH-HHHHH-HHHHHHHHHHH--------hcCCHHHHHHHHHHhhhccCCCCccccccc
Q psy11025        404 RVKEFDKAADLIRQEIGYHQESEH-LLAIG-RLAVALVLVQL--------ARGDTVAAEKAFKEWGNCCEAPERCESGSS  473 (535)
Q Consensus       404 ~~~~y~~Aie~ye~~~~~~~a~e~-~~~a~-rl~la~il~~L--------~~~D~vaA~~~~e~~~~~~~~~~f~~sre~  473 (535)
                      ..|+|++|++.|+++.+....... ....+ .+..+.++..+        ..|+...|...|++......+         
T Consensus       390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---------  460 (537)
T 3fp2_A          390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR---------  460 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT---------
T ss_pred             HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC---------
Confidence            889999999999888766543211 11111 01111112222        015666688888763321110         


Q ss_pred             cccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        474 SFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       474 ~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                          .....+..+.|++..|+.-.|...+++
T Consensus       461 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (537)
T 3fp2_A          461 --------------------SEQAKIGLAQLKLQMEKIDEAIELFED  487 (537)
T ss_dssp             --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------------CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                                012235668888999999999998887

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.11  E-value=0.0088  Score=51.47  Aligned_cols=100  Identities=19%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hh
Q psy11025        348 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SE  426 (535)
Q Consensus       348 ~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e  426 (535)
                      +|+.|-....++-..++..++++|+++|.+|+++....      ...+...|.++...|+|++|++.|+++.++-.. ..
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            45555555555555666777999999999999985443      457788899999999999999999998765322 12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .+...       +.|++..|+...|...|++.-.
T Consensus        83 a~~~l-------g~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           83 GYIRK-------AACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHH-------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHCCCHHHHHHHHHHHHH
Confidence            22222       3556677888889999997544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.08  E-value=0.019  Score=54.85  Aligned_cols=23  Identities=4%  Similarity=-0.113  Sum_probs=19.1

Q ss_pred             HHHHHHHHhc----cCCHHHHHHHHHH
Q psy11025        498 AVALVLVQLA----RGDTVAAEKAFKE  520 (535)
Q Consensus       498 ~l~a~lc~L~----~gD~V~A~~a~~~  520 (535)
                      .+..+.|++.    .+|...|...+++
T Consensus       185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~  211 (273)
T 1ouv_A          185 CFNAGNMYHHGEGATKNFKEALARYSK  211 (273)
T ss_dssp             HHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence            3567888888    9999999988887

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.07  E-value=0.0077  Score=64.98  Aligned_cols=99  Identities=11%  Similarity=-0.015  Sum_probs=80.1

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHh---cCCcHHHHHHHHH
Q psy11025        325 YSRAADVAHGEDNYKQAAEYISR----NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAH---GEDNYKQAAEYIS  396 (535)
Q Consensus       325 YekAA~~~eAa~af~kAA~~y~~----~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~---~egr~~~Aa~~l~  396 (535)
                      +..-|.+.+|...|++|-..+.+    ..-.-+.+|...|.+|... ++++|..+|++|.+++.   +.+-+. -+..+.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~  397 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ-LGMAVM  397 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHH
Confidence            33345688999999999998865    2224677888999999876 49999999999999964   444444 567788


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      ++|.+|...|+|++|..+|+++.+.+..
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~  425 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLV  425 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.05  E-value=0.0027  Score=67.45  Aligned_cols=158  Identities=9%  Similarity=0.021  Sum_probs=102.7

Q ss_pred             HHHHHHHHhch-HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADV-AHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       321 AA~lYekAA~~-~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      -+.+|...+++ .+|..+|.+|....-..    +.++...|.+|... ++++|+++|++|+++..     .  ...+...
T Consensus       108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~--~~~~~~l  176 (474)
T 4abn_A          108 KGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-----N--KVSLQNL  176 (474)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC-----C--HHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----C--HHHHHHH
Confidence            34455555667 88888888887654333    23566667777654 59999999999998742     2  3788889


Q ss_pred             HHHHHHh---------hhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH----hc--CCHHHHHHHHHHhhhcc
Q psy11025        399 ARMCVRV---------KEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQL----AR--GDTVAAEKAFKEWGNCC  462 (535)
Q Consensus       399 Ael~e~~---------~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L----~~--~D~vaA~~~~e~~~~~~  462 (535)
                      |.++...         ++|++|++.|+++.+..-.. ..+...+.+     +..+    ..  ++...|...|++.... 
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-----~~~~~~~~~~~~g~~~~A~~~~~~al~~-  250 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA-----YLSLYFNTGQNPKISQQALSAYAQAEKV-  250 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----HHHHHHHTTCCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----HHHHHHhhccccchHHHHHHHHHHHHHh-
Confidence            9999888         99999999999998765332 223333322     2222    11  5566688888863321 


Q ss_pred             CCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        463 EAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       463 ~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                       +|.                        ...-....+..+.|+...|++..|...|++
T Consensus       251 -~p~------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  283 (474)
T 4abn_A          251 -DRK------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQ  283 (474)
T ss_dssp             -CGG------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -CCC------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             110                        000112235668888888999999888877

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.005  Score=63.65  Aligned_cols=162  Identities=15%  Similarity=0.054  Sum_probs=106.6

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+.+++.+|...|.++......+.    .++...+.++... ++++|+.+|.++.+......      ..+...
T Consensus       309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l  378 (514)
T 2gw1_A          309 HRGQMNFILQNYDQAGKDFDKAKELDPENI----FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP------EVPNFF  378 (514)
T ss_dssp             HHHHHHHHTTCTTHHHHHHHHHHHTCSSCS----HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS------HHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH------HHHHHH
Confidence            456666777777788888887766543322    2455666666655 49999999999998865543      467778


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhccCCCCccccccccc
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA---RGDTVAAEKAFKEWGNCCEAPERCESGSSSF  475 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~---~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~  475 (535)
                      |.++...|+|++|+.+|++..+..................+.+.+.   .|+...|...|++......+           
T Consensus       379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----------  447 (514)
T 2gw1_A          379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-----------  447 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-----------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-----------
Confidence            8999999999999999999877654432100000011112245666   78888898888874331110           


Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        476 SFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       476 l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                        ........+.|++..||...|...+++
T Consensus       448 ------------------~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (514)
T 2gw1_A          448 ------------------SEQAKIGLAQMKLQQEDIDEAITLFEE  474 (514)
T ss_dssp             ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence                              011235567888899999999998887

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.05  E-value=0.0069  Score=54.51  Aligned_cols=103  Identities=14%  Similarity=0.082  Sum_probs=75.8

Q ss_pred             ccCCHHHHHH------HHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC
Q psy11025        314 EELKPDAALT------LYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED  386 (535)
Q Consensus       314 ~k~K~D~AA~------lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg  386 (535)
                      .+..|+.+-.      .|.+.+++.+|..+|.+|....-.++.    ++..-+.++... ++++|+++|.+|+.+.-...
T Consensus        29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            3456664444      444556688999999998876433333    466667777765 49999999999999976653


Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q psy11025        387 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE  426 (535)
Q Consensus       387 r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e  426 (535)
                            ..+...|.++...|+|++|++.|+++.++....+
T Consensus       105 ------~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          105 ------TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence                  3567889999999999999999999987764443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.04  E-value=0.0019  Score=59.10  Aligned_cols=126  Identities=10%  Similarity=0.044  Sum_probs=85.0

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +..|.+.+++.+|...|.+|.     .+  -+.++..-+.++... ++++|+++|.+|+.+....      ...+...|.
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~-----~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~lg~   79 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQ-----DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYFQRGM   79 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-----SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHc-----CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHH
Confidence            344445566777888777773     11  234677777777665 5999999999999985432      356788899


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        401 MCVRVKEFDKAADLIRQEIGYHQESE----------HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~~~~a~e----------~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      ++...++|++|++.|+++.+......          ............+.++...|+...|...|++...
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999999999999999877543211          0000011122223556677888889999987544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.03  E-value=0.017  Score=54.37  Aligned_cols=119  Identities=11%  Similarity=0.025  Sum_probs=82.1

Q ss_pred             hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      +++.+|...|.++.......+..-+.++...+.++... ++++|+.+|++|+++....      ...+...|.++...++
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHccC
Confidence            44666677776665542223333455566666666654 5999999999999985443      3467788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        408 FDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       408 y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      |++|+++|+++.+..... ..+...       +.+.+..|+...|...|++...
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~a~~  139 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLNR-------GIALYYGGRDKLAQDDLLAFYQ  139 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHH-------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHH-------HHHHHHhccHHHHHHHHHHHHH
Confidence            999999999988764332 222222       2455667888889999988544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.02  E-value=0.0091  Score=50.89  Aligned_cols=92  Identities=10%  Similarity=-0.015  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|.+.+++.+|..+|.+|....-++.    .++...+.++... ++++|+.+|++|+++--..      ...+...
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~l   91 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAAL   91 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            556677788999999999999987653332    3456667777665 4999999999999985543      2356778


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~  421 (535)
                      |.++...|++++|+..|++..+.
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           92 AVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            88999999999999999987543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.01  E-value=0.0077  Score=56.41  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIG  432 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~  432 (535)
                      ++..-+.++... ++++|+.+|++|+++. ..      ...+...|.++...|+|++|+..|+++.+..-.. ...... 
T Consensus       120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l-  191 (217)
T 2pl2_A          120 LHLQRGLVYALLGERDKAEASLKQALALE-DT------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY-  191 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH-
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-
Confidence            455556666655 4999999999999987 22      3466788999999999999999999987654322 112222 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        433 RLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       433 rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                            ..+.+..|+...|...|++
T Consensus       192 ------a~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          192 ------ASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             ------HHHHTC-------------
T ss_pred             ------HHHHHHccCHHHHHHHHHH
Confidence                  2445566777668888875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.98  E-value=0.0087  Score=55.06  Aligned_cols=101  Identities=13%  Similarity=0.022  Sum_probs=72.0

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhC-------HH-HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCc--HHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRN-------RE-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN--YKQ  390 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~-------~~-~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr--~~~  390 (535)
                      +..+.+.+++.+|..+|.+|..+--..       .. .-+.+|..-+.++.+.+ +++|+.+|.+|+++|...+.  ++.
T Consensus        18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~   97 (159)
T 2hr2_A           18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   97 (159)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch
Confidence            334445567889999999998876442       11 12337777788888765 99999999999999654442  222


Q ss_pred             HHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        391 AAEYI----SRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       391 Aa~~l----~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      + +.+    -.-|..+...++|++|++.|+++.++--
T Consensus        98 ~-~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           98 G-KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            2 333    6667788888999999999999877653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0092  Score=61.63  Aligned_cols=29  Identities=14%  Similarity=0.019  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11025        392 AEYISRAARMCVRVKEFDKAADLIRQEIG  420 (535)
Q Consensus       392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~  420 (535)
                      ...+...|.++...++|++|+++|++..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          237 AISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            34444455555666778888887777643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.95  E-value=0.01  Score=53.33  Aligned_cols=101  Identities=14%  Similarity=0.132  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hh
Q psy11025        348 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SE  426 (535)
Q Consensus       348 ~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e  426 (535)
                      +|+.+...|..+.-++...++++|+.+|++|+.+--..      ...+...|.++...|+|++|++.|+++..+.-. ..
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~  105 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT  105 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence            56666666666666666667999999999999985443      346778889999999999999999999776533 22


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q psy11025        427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNC  461 (535)
Q Consensus       427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~  461 (535)
                      .+...+       .|++..|+...|..+|++.-..
T Consensus       106 ~~~~lg-------~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          106 PVFHTG-------QCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHH-------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------HHHHHcCCHHHHHHHHHHHHHh
Confidence            333333       5566778888899999985553

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.94  E-value=0.026  Score=52.28  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=88.1

Q ss_pred             HHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHH
Q psy11025        355 VLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIG  432 (535)
Q Consensus       355 ~l~~AAk~~e-k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~  432 (535)
                      .+...|.++- ..++++|+++|.+|+++....+ .    ..+...|.++...++|++|++.|+++.+..-.. ..+..  
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--   81 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-S----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG--   81 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH--
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-c----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH--
Confidence            4444555554 4569999999999999875221 1    344448889999999999999999987543221 11222  


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHH
Q psy11025        433 RLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTV  512 (535)
Q Consensus       433 rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V  512 (535)
                           .+.+++..|+...|...|++......+                      ...-+..........|.|++..|+..
T Consensus        82 -----l~~~~~~~~~~~~A~~~~~~al~~~p~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~  134 (228)
T 4i17_A           82 -----KSAAYRDMKNNQEYIATLTEGIKAVPG----------------------NATIEKLYAIYYLKEGQKFQQAGNIE  134 (228)
T ss_dssp             -----HHHHHHHTTCHHHHHHHHHHHHHHSTT----------------------CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             -----HHHHHHHcccHHHHHHHHHHHHHHCCC----------------------cHHHHHHHHHHHHHHhHHHHHhccHH
Confidence                 235566778888899999874332111                      00012223334567789999999999


Q ss_pred             HHHHHHHH
Q psy11025        513 AAEKAFKE  520 (535)
Q Consensus       513 ~A~~a~~~  520 (535)
                      .|...+++
T Consensus       135 ~A~~~~~~  142 (228)
T 4i17_A          135 KAEENYKH  142 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999987

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.92  E-value=0.028  Score=46.00  Aligned_cols=101  Identities=15%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        353 STVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       353 A~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      +..+...|.++.. .++++|+.+|.+|+++....      ..++...|.++...++|++|+.+|++........ .....
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence            3445555555554 46999999999999986433      4677888999999999999999999998776542 11111


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      ........+.++...++...|...|++..
T Consensus        78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           78 IAKAYARIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            12222233455667788888999998743

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.91  E-value=0.029  Score=53.50  Aligned_cols=22  Identities=23%  Similarity=0.219  Sum_probs=18.4

Q ss_pred             HHHHHHHhc----cCCHHHHHHHHHH
Q psy11025        499 VALVLVQLA----RGDTVAAEKAFKE  520 (535)
Q Consensus       499 l~a~lc~L~----~gD~V~A~~a~~~  520 (535)
                      ...+.|++.    .+|...|...+++
T Consensus       222 ~~l~~~~~~g~~~~~~~~~A~~~~~~  247 (273)
T 1ouv_A          222 FNLGAMQYNGEGVTRNEKQAIENFKK  247 (273)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred             HHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            566888888    8999999888887

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.91  E-value=0.028  Score=59.63  Aligned_cols=57  Identities=12%  Similarity=-0.039  Sum_probs=33.2

Q ss_pred             HHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        359 GAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       359 AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~  421 (535)
                      .+.+|.+. ++++|+++|.++.++....      ...+...+.++.+.|++++|+++|++..+.
T Consensus       379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  436 (597)
T 2xpi_A          379 VGIYYLCVNKISEARRYFSKSSTMDPQF------GPAWIGFAHSFAIEGEHDQAISAYTTAARL  436 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34444443 3677777777766643221      123445566666777777887777776543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.016  Score=48.61  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      |...+..+-.++...++++|+.+|.+|+++....      ...+...|.++...++|++|++.|+++.+..-.. ..+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            3334445555556667999999999999986544      3678889999999999999999999987664322 12222


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                             .+.++...|+...|...|++.-
T Consensus        78 -------lg~~~~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           78 -------KATAQIAVKEYASALETLDAAR   99 (126)
T ss_dssp             -------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHhCHHHHHHHHHHHH
Confidence                   2355666788888999998743

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.90  E-value=0.0098  Score=50.40  Aligned_cols=96  Identities=16%  Similarity=0.132  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|.+.+++.+|..+|.++..... .......++...+.++... ++++|+.+|.+++.+....      ...+...
T Consensus        33 ~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~  105 (148)
T 2dba_A           33 KEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------VKALYRR  105 (148)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------HHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------HHHHHHH
Confidence            456666667778999999998876432 2222456677777777765 5999999999999985443      4567788


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      |.++...++|++|+++|++..+..
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC
Confidence            899999999999999999876543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.89  E-value=0.0045  Score=54.79  Aligned_cols=85  Identities=18%  Similarity=0.038  Sum_probs=46.9

Q ss_pred             hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      +++++|...|.+|....   ++ -...+..-|++|.+. ++++|+++|++|+++--..      ...+...|.++...++
T Consensus        11 ~~~e~ai~~~~~a~~~~---p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSP---RQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRFLGLLYELEEN   80 (150)
T ss_dssp             HHHHHHHHHHHHHSCSH---HH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHhcccC---cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCc
Confidence            44555555555554322   11 122233445555443 3667777777776664332      3455566666666677


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy11025        408 FDKAADLIRQEIGYHQ  423 (535)
Q Consensus       408 y~~Aie~ye~~~~~~~  423 (535)
                      |++|+..|+++.++.-
T Consensus        81 ~~~A~~~~~~al~~~p   96 (150)
T 4ga2_A           81 TDKAVECYRRSVELNP   96 (150)
T ss_dssp             HHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhCC
Confidence            7777777777666653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.86  E-value=0.011  Score=52.20  Aligned_cols=97  Identities=11%  Similarity=0.077  Sum_probs=73.5

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhC--------------HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRN--------------REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE  385 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~--------------~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e  385 (535)
                      -+..|-+.+++.+|..+|.+|..+....              ...-+.+|...|.++.+. ++++|+.++.+|+++-...
T Consensus        17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence            3444555567899999999999885331              112356777778888765 4999999999999984332


Q ss_pred             CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        386 DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       386 gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                            .+.+...|.++...|+|++|++.|+++..+.-
T Consensus        97 ------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  128 (162)
T 3rkv_A           97 ------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHP  128 (162)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             ------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence                  35777889999999999999999999876643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.85  E-value=0.012  Score=53.69  Aligned_cols=139  Identities=12%  Similarity=0.074  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHH
Q psy11025        353 STVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAI  431 (535)
Q Consensus       353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a  431 (535)
                      ...|..+-..+...++++|+++|.+|+     ..    -...+...|.++...++|++|++.|+++.+..... ..+.. 
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-   76 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ-   76 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH-
Confidence            334555455555567999999999984     11    23588889999999999999999999987664321 12222 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCH
Q psy11025        432 GRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDT  511 (535)
Q Consensus       432 ~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~  511 (535)
                            .+.+++..|+...|...|++......+.....      ...+++ .+      ........+..+.|++..||.
T Consensus        77 ------lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~-~~------~~~~~~~~~~l~~~~~~~g~~  137 (213)
T 1hh8_A           77 ------RGMLYYQTEKYDLAIKDLKEALIQLRGNQLID------YKILGL-QF------KLFACEVLYNIAFMYAKKEEW  137 (213)
T ss_dssp             ------HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE------CGGGTB-CC------EEEHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHcccHHHHHHHHHHHHHhCCCccHHH------HHHhcc-cc------CccchHHHHHHHHHHHHccCH
Confidence                  23456667888889999988554332211000      000000 00      011123346778999999999


Q ss_pred             HHHHHHHHH
Q psy11025        512 VAAEKAFKE  520 (535)
Q Consensus       512 V~A~~a~~~  520 (535)
                      ..|...+++
T Consensus       138 ~~A~~~~~~  146 (213)
T 1hh8_A          138 KKAEEQLAL  146 (213)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999987

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.84  E-value=0.012  Score=62.28  Aligned_cols=123  Identities=11%  Similarity=0.047  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC---------C-HHHHHHHHHHHHHHHhcCCcHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL---------K-SDAALTLYSRAADVAHGEDNYK  389 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~---------~-~~eAie~y~kAaely~~egr~~  389 (535)
                      .-+.+|.+.+++.+|..+|.+|....   ++  +.++...+.++...         + +++|+++|++|+++....    
T Consensus       142 ~lg~~~~~~g~~~~A~~~~~~al~~~---p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----  212 (474)
T 4abn_A          142 QLGEVYWKKGDVTSAHTCFSGALTHC---KN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD----  212 (474)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTTC---CC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC---CC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC----
Confidence            45677888888888888888887653   44  36778888888775         5 899999999999986554    


Q ss_pred             HHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHH---H-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        390 QAAEYISRAARMCVRV--------KEFDKAADLIRQEIGYHQ---E-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       390 ~Aa~~l~kaAel~e~~--------~~y~~Aie~ye~~~~~~~---a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                        ...+...|.++...        ++|++|++.|+++.+..-   . ...+...+       .++...|+...|...|++
T Consensus       213 --~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg-------~~~~~~g~~~~A~~~~~~  283 (474)
T 4abn_A          213 --GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA-------TLHKYEESYGEALEGFSQ  283 (474)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH-------HHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH-------HHHHHcCCHHHHHHHHHH
Confidence              34677888888888        999999999999987643   1 12233322       455567888889999987


Q ss_pred             hhh
Q psy11025        458 WGN  460 (535)
Q Consensus       458 ~~~  460 (535)
                      ...
T Consensus       284 al~  286 (474)
T 4abn_A          284 AAA  286 (474)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.83  E-value=0.0083  Score=49.73  Aligned_cols=94  Identities=14%  Similarity=0.161  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+.+++.+|..+|.++......+    ..++...+.++... ++++|+.+|++|+++....      ...+...
T Consensus        21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l   90 (133)
T 2lni_A           21 NKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------IKGYTRK   90 (133)
T ss_dssp             HHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------hHHHHHH
Confidence            56777778888999999999987654333    34577777777765 4999999999999985443      3567788


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      |.++...++|++|+++|++..+...
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            9999999999999999999876543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.76  E-value=0.016  Score=62.23  Aligned_cols=111  Identities=17%  Similarity=0.070  Sum_probs=54.7

Q ss_pred             chHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhH
Q psy11025        330 DVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF  408 (535)
Q Consensus       330 ~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y  408 (535)
                      ++.+|..+|.+|....-.+    +.++...|.++.. .++++|+++|++|.++....      ...+...|.++...++|
T Consensus         4 ~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~   73 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------PEAVARLGRVRWTQQRH   73 (568)
T ss_dssp             -----------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCH
Confidence            4455555555554433222    1234444555544 34777787887777764332      34566677777777788


Q ss_pred             HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        409 DKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       409 ~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ++|++.|+++.+..-.. ..+...       ..+++..|+...|...|++
T Consensus        74 ~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~  116 (568)
T 2vsy_A           74 AEAAVLLQQASDAAPEHPGIALWL-------GHALEDAGQAEAAAAAYTR  116 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHH
Confidence            88888877776553221 112222       2345556676667777765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.76  E-value=0.018  Score=47.08  Aligned_cols=92  Identities=12%  Similarity=0.083  Sum_probs=63.8

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+..|...+++.+|...|.++......+    +.++...+.++... ++++|+++|.+++.+....      ...+...|
T Consensus        18 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~   87 (131)
T 2vyi_A           18 EGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------SKAYGRMG   87 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC------HHHHHHHH
Confidence            4455555666788888888877654333    23455666666554 4888888888888874333      34667778


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      .++...++|++|+++|++..+..
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~  110 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELD  110 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC
Confidence            88888888888888888876553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.76  E-value=0.019  Score=68.90  Aligned_cols=103  Identities=16%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH-------------HhcCCcHHHHHHH--------HH
Q psy11025        339 KQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADV-------------AHGEDNYKQAAEY--------IS  396 (535)
Q Consensus       339 ~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAael-------------y~~egr~~~Aa~~--------l~  396 (535)
                      .+|.++|.+..+  ...|.+.++++++.+ .++|+++|..|...             |...++.....++        +.
T Consensus      1122 kEAIdsYiKAdD--~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~ 1199 (1630)
T 1xi4_A         1122 KEAIDSYIKADD--PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ 1199 (1630)
T ss_pred             HHHHHHHHhcCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH
Confidence            444444443222  234666777888765 99999999887732             3333554432222        34


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ++|..++..|+|++|+.+|..+.       .+.+.+.+     +++|  |+...|+.++++
T Consensus      1200 ~iGd~le~eg~YeeA~~~Y~kA~-------ny~rLA~t-----LvkL--ge~q~AIEaarK 1246 (1630)
T 1xi4_A         1200 QVGDRCYDEKMYDAAKLLYNNVS-------NFGRLAST-----LVHL--GEYQAAVDGARK 1246 (1630)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhhh-------HHHHHHHH-----HHHh--CCHHHHHHHHHH
Confidence            57777777888888888888752       33333322     4455  566668888875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.70  E-value=0.015  Score=50.40  Aligned_cols=92  Identities=13%  Similarity=0.032  Sum_probs=65.6

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +..|.+.+++.+|...|.++....-.+.    ..+...+.++... ++++|+.+|.+|+.+.....      ..+...|.
T Consensus        25 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~   94 (142)
T 2xcb_A           25 GFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYGALMDINEP------RFPFHAAE   94 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc------HHHHHHHH
Confidence            4445555668888888888876543332    2455566666655 49999999999998865442      34567788


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        401 MCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      ++...|+|++|++.|+++.+..-
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC
Confidence            88888999999999998876654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.69  E-value=0.025  Score=57.03  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCH-----------HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNR-----------EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY  388 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~-----------~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~  388 (535)
                      -+.+|.+.+++.+|..+|.+|..+.....           ..-+.+|...|.+|.+.+ +++|+.+|.+|+++....   
T Consensus       153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---  229 (336)
T 1p5q_A          153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---  229 (336)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Confidence            34555566778899999999988865431           112567888888887764 999999999999985443   


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                         ...+...|.++...++|++|++.|+++.++.
T Consensus       230 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  260 (336)
T 1p5q_A          230 ---EKGLSRRGEAHLAVNDFELARADFQKVLQLY  260 (336)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence               4567888999999999999999999987664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.68  E-value=0.068  Score=45.97  Aligned_cols=95  Identities=16%  Similarity=0.172  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        353 STVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       353 A~~l~~AAk~~e-k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      +..+...|.++- ..++++|+.+|.+|+++....      ..++...|.++...++|++|++.|++..+..... ..+..
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            444555555554 456999999999999986543      4677888999999999999999999987765332 11222


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                             .+.+....|+...|...|++...
T Consensus        87 -------~a~~~~~~~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           87 -------RAASNMALGKFRAALRDYETVVK  109 (166)
T ss_dssp             -------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHhccHHHHHHHHHHHHH
Confidence                   23456667888889999987433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.68  E-value=0.01  Score=52.42  Aligned_cols=99  Identities=8%  Similarity=0.031  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hh
Q psy11025        348 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SE  426 (535)
Q Consensus       348 ~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e  426 (535)
                      .+..+...+..+...+...++++|+.+|.+|+.+....      ...+...|.++...|+|++|++.|+++....-. ..
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   90 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR   90 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            34444444444444444455777777777777664332      234456666777777777777777776554322 11


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      .+...       +.|++..|+...|...|++..
T Consensus        91 ~~~~l-------g~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           91 FPFHA-------AECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHHH-------HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHcCCHHHHHHHHHHHH
Confidence            22222       244555666666777776643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.66  E-value=0.027  Score=49.72  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHH
Q psy11025        354 TVLEKGAKSL-EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAI  431 (535)
Q Consensus       354 ~~l~~AAk~~-ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a  431 (535)
                      ..+...+.++ ...++++|+++|.+|+++....      ..++...|.++...++|++|++.|+++.++.-.. ..+...
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3444444444 4556999999999999987554      4678889999999999999999999997765332 122222


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        432 GRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       432 ~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                             ..++...++...|...|++.-.
T Consensus        86 -------g~~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           86 -------GLARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             -------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHccCHHHHHHHHHHHHH
Confidence                   3456667888889999987444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.66  E-value=0.021  Score=48.07  Aligned_cols=95  Identities=11%  Similarity=0.062  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|.+.+++.+|..+|.+|......+    +.++...+.++... ++++|+.+|.+|+.+....      ...+...
T Consensus        14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l   83 (137)
T 3q49_B           14 EQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKAHFFL   83 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------HHHHHHH
Confidence            45666777778888888888887765333    23566667777665 4889999999998876443      3467778


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      |.++...++|++|++.|+++.+..-.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            88888889999999999888766543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.65  E-value=0.016  Score=51.24  Aligned_cols=93  Identities=11%  Similarity=0.024  Sum_probs=70.0

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+..|.+.+++.+|..+|.+|....-.+.    ..+...+.++... ++++|+.+|.+|+.+.-...      ..+...|
T Consensus        27 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~~lg   96 (148)
T 2vgx_A           27 LAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP------RFPFHAA   96 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc------hHHHHHH
Confidence            34455566678899999999876543332    3455667777665 59999999999999865442      3567789


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      .++...|++++|++.|+++.++..
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCc
Confidence            999999999999999999876654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.64  E-value=0.083  Score=42.90  Aligned_cols=124  Identities=14%  Similarity=0.087  Sum_probs=82.2

Q ss_pred             HHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11025        356 LEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL  434 (535)
Q Consensus       356 l~~AAk~~e-k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl  434 (535)
                      +...+.++. ..++++|+.+|.++.+.....      ...+..+|.++...+++++|+++|++..........      .
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~   71 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------A   71 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------H
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH------H
Confidence            334444444 356999999999998874332      346667888888899999999999998765432211      1


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHH
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAA  514 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A  514 (535)
                      ....+.+....++...|...|++.......                         .    ....+..+.+++..||...|
T Consensus        72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------------~----~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           72 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-------------------------S----AEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-------------------------C----HHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------------------C----hHHHHHHHHHHHHHccHHHH
Confidence            111234566778888898888863321000                         0    11234567888899999999


Q ss_pred             HHHHHH
Q psy11025        515 EKAFKE  520 (535)
Q Consensus       515 ~~a~~~  520 (535)
                      ...+++
T Consensus       123 ~~~~~~  128 (136)
T 2fo7_A          123 IEYYQK  128 (136)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999886

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.63  E-value=0.026  Score=45.70  Aligned_cols=93  Identities=15%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|...+++.+|...|.++......+.    ..+...+.++... ++++|+.+|.+++++....      ...+...
T Consensus        14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l   83 (125)
T 1na0_A           14 NLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNL   83 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHH
Confidence            345667777778888888888776543222    2455556666554 4888888888888764332      2456677


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      |.++...+++++|+.+|++..+..
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC
Confidence            888888888888888888775543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.61  E-value=0.02  Score=45.97  Aligned_cols=89  Identities=11%  Similarity=0.074  Sum_probs=46.6

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +..|...+++.+|..+|.++......+.    ..+..-+.++.. .++++|+.+|.+++++....      ...+...|.
T Consensus        11 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~   80 (118)
T 1elw_A           11 GNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------GKGYSRKAA   80 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------HHHHHHHHH
Confidence            4444555556666666666555432221    233334444433 34666666666666654322      234555566


Q ss_pred             HHHHhhhHHHHHHHHHHHHH
Q psy11025        401 MCVRVKEFDKAADLIRQEIG  420 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~  420 (535)
                      ++...++|++|++.|++..+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            66666666666666665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.61  E-value=0.025  Score=52.00  Aligned_cols=109  Identities=18%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-------CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        351 AASTVLEKGAKSLEELKSDAALTLYSRAADVAHG-------EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       351 ~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~-------egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      .|..++..+-.+++..++++|+.+|.+|+++-..       .-.+ .-+.++...|..+...|+|++|++.|+++.++|.
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~-~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAG-FDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhcc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            3455566666666677899999999999999766       2111 1233888888899999999999999999998743


Q ss_pred             Hh-hH---HHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        424 ES-EH---LLAIG-RLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       424 a~-e~---~~~a~-rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .. +.   ...+. +.+.-.+++....|+...|..+|++...
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            21 00   11110 0001122344455666669999998443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.57  E-value=0.03  Score=46.51  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  435 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~  435 (535)
                      |..|-..+...++++|+.+|.++++.+....   .+...+...|.++...|+|++|++.|++..+..-.......+   .
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~---~   79 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGV---YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGG---L   79 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH---H
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHH---H
Confidence            4444445555679999999999999876553   334677788999999999999999999988765443221111   1


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        436 VALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       436 la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      +..+.|+...|+...|...|+++..
T Consensus        80 ~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           80 LKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1123556677888889999987544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.56  E-value=0.047  Score=53.69  Aligned_cols=94  Identities=13%  Similarity=0.081  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  433 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r  433 (535)
                      .+..-+.++... ++++|.++|++|+++.....  .   ..+...+.++.+.|++++|..+|+++.+..-..      ..
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~  169 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--T---LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HH  169 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--H---HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------TH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc--c---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HH
Confidence            445555566554 48899999999988543321  1   266777788888899999999999886542111      11


Q ss_pred             HHHHHHHHHH-hcCCHHHHHHHHHHhh
Q psy11025        434 LAVALVLVQL-ARGDTVAAEKAFKEWG  459 (535)
Q Consensus       434 l~la~il~~L-~~~D~vaA~~~~e~~~  459 (535)
                      +.++.+.+.. ..|+...|..+|++.-
T Consensus       170 ~~~~~a~~~~~~~~~~~~A~~~~~~al  196 (308)
T 2ond_A          170 VYVTAALMEYYCSKDKSVAFKIFELGL  196 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1122122222 2578877888888743

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.51  E-value=0.023  Score=59.26  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +.+|.+.+++.+|...|.++......+.    .++...+.++... ++++|+.+|++|+++.............+...|.
T Consensus       351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~  426 (537)
T 3fp2_A          351 ACLLYKQGKFTESEAFFNETKLKFPTLP----EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT  426 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence            3444444455666666666655543332    2344556666655 4899999999999987655443333334455667


Q ss_pred             HHHHh----------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        401 MCVRV----------KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       401 l~e~~----------~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      ++...          ++|++|+.+|++..+.......      .....+.+++..|+...|...|++...
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ------AKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            77777          9999999999998766433211      112223456667888889999998544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.50  E-value=0.026  Score=59.93  Aligned_cols=94  Identities=7%  Similarity=0.012  Sum_probs=75.4

Q ss_pred             chHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHH
Q psy11025        330 DVAHGEDNYKQAAEYISR----NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAH---GEDNYKQAAEYISRAARM  401 (535)
Q Consensus       330 ~~~eAa~af~kAA~~y~~----~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~---~egr~~~Aa~~l~kaAel  401 (535)
                      +|.+|...|++|-..+.+    ..-.-+.+|...|.+|... ++++|..+|++|.+++.   +.+-++ -+..+.++|.+
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~-~a~~l~nLa~~  391 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN-VASMWLKLGRL  391 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHH
Confidence            378999999999988865    2223677888899999876 49999999999999965   344444 45567799999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        402 CVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       402 ~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      |-..|+|++|..+|+++.+.+..
T Consensus       392 ~~~qg~~~eA~~~~~~Al~i~~~  414 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIAIMEV  414 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998766643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.49  E-value=0.03  Score=60.15  Aligned_cols=122  Identities=9%  Similarity=-0.034  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.+|.+.+++.+|...|.+|....-.+    +.++...|.++... ++++|+++|++|+++....      ...+...
T Consensus        28 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l   97 (568)
T 2vsy_A           28 MLADAELGMGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWL   97 (568)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHH
Confidence            45667777778888888888887654333    33566667777665 4999999999999985443      4577788


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHh
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLAR---GDTVAAEKAFKEW  458 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~---~D~vaA~~~~e~~  458 (535)
                      |.++...++|++|++.|+++.+..-.. ..+...       ..++...   ++...|...|++.
T Consensus        98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           98 GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL-------LNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhhccccHHHHHHHHHHH
Confidence            999999999999999999987664322 112222       2334455   7777787777763

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.49  E-value=0.019  Score=50.62  Aligned_cols=97  Identities=11%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC------c------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGED------N------YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~eg------r------~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      ...+-.+++..++++|+.+|.+|++++....      .      ...-..++...|.++...++|++|+..|+++.++--
T Consensus        15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p   94 (162)
T 3rkv_A           15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE   94 (162)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence            3444444555679999999999999854321      0      123356788899999999999999999999876632


Q ss_pred             Hh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        424 ES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       424 a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      .. ..+...       +.|++..|+...|...|++.-
T Consensus        95 ~~~~a~~~~-------g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           95 TNEKALFRR-------AKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             TCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchHHHHHH-------HHHHHHHhcHHHHHHHHHHHH
Confidence            21 112222       355666788888999998743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.46  E-value=0.028  Score=51.19  Aligned_cols=95  Identities=8%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHH------------HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNRE------------AASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNY  388 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~------------~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~  388 (535)
                      +..|.+.+++.+|..+|.+|..+....++            ..+.++...|.++... ++++|+.+|.+|+++....   
T Consensus        45 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---  121 (198)
T 2fbn_A           45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---  121 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---
Confidence            44444555688999999999876544331            1246777888888765 4999999999999985433   


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                         ...+...|.++...++|++|++.|+++.+..
T Consensus       122 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A          122 ---VKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence               3567888999999999999999999987664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.40  E-value=0.049  Score=55.97  Aligned_cols=100  Identities=8%  Similarity=-0.016  Sum_probs=63.6

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhC-H----HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcH--HHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRN-R----EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY--KQAAE  393 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~-~----~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~--~~Aa~  393 (535)
                      +-.|..-|++++|.++|.+|.++..+. +    -..+.+|..-|.+|...+ .++|+.+|++|.++.......  ..-+.
T Consensus        58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~  137 (472)
T 4g1t_A           58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE  137 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence            445566677888999999988887541 1    124556777777777654 899999999998886543211  01122


Q ss_pred             HHHHHHH--HHHHhhhHHHHHHHHHHHHHH
Q psy11025        394 YISRAAR--MCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       394 ~l~kaAe--l~e~~~~y~~Aie~ye~~~~~  421 (535)
                      .+...+-  +....++|++|++.|+++.+.
T Consensus       138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~  167 (472)
T 4g1t_A          138 LDCEEGWTRLKCGGNQNERAKVCFEKALEK  167 (472)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            3333332  223346788888888887654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.40  E-value=0.08  Score=49.28  Aligned_cols=116  Identities=18%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL----KSDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~----~~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      +.+|..-+++.+|...|.+|++.  ..    +.++...+.+|...    ++++|+.+|++|++.    |.    ...+..
T Consensus        25 g~~~~~~~~~~~A~~~~~~a~~~--g~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~----g~----~~a~~~   90 (212)
T 3rjv_A           25 ADTWVSSGDYQKAEYWAQKAAAQ--GD----GDALALLAQLKIRNPQQADYPQARQLAEKAVEA----GS----KSGEIV   90 (212)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHT--TC----HHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT----TC----HHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHc--CC----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC----CC----HHHHHH
Confidence            34444445566677777776542  12    23455566667665    689999999999764    22    235567


Q ss_pred             HHHHHHH----hhhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHh
Q psy11025        398 AARMCVR----VKEFDKAADLIRQEIGYHQE---SEHLLAIGRLAVALVLVQLA----RGDTVAAEKAFKEW  458 (535)
Q Consensus       398 aAel~e~----~~~y~~Aie~ye~~~~~~~a---~e~~~~a~rl~la~il~~L~----~~D~vaA~~~~e~~  458 (535)
                      +|.++..    .+++++|+++|+++++.-..   .......+       .+++.    ..|...|...|++-
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg-------~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLG-------LIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH-------HHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHH-------HHHHcCCCCCCCHHHHHHHHHHH
Confidence            7888876    67999999999999765431   12222222       33444    56888898888863

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.35  E-value=0.024  Score=58.35  Aligned_cols=95  Identities=12%  Similarity=0.149  Sum_probs=72.5

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhC------------HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRN------------REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNY  388 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~------------~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~  388 (535)
                      +..|.+.+++.+|..+|.+|..+....            ...-+.+|...|.+|.+. ++++|+++|.+|+++....   
T Consensus       230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---  306 (370)
T 1ihg_A          230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---  306 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh---
Confidence            444445566889999999999865432            223466777778888765 4999999999999874332   


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                         .+.+-..|.++...++|++|++.|+++.++.
T Consensus       307 ---~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          307 ---TKALYRRAQGWQGLKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence               4667788999999999999999999987664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.32  E-value=0.007  Score=48.43  Aligned_cols=91  Identities=14%  Similarity=0.072  Sum_probs=49.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|.+.+++.+|..+|.++........    ..+...|.++... ++++|+++|++|+++....    .-...+...|
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~l~   83 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLDPEES----KYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNKDVWAAKA   83 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chHHHHHHHH
Confidence            34555555666666666666655432221    2344444555443 3666777776666654330    0123555666


Q ss_pred             HHHHHh-hhHHHHHHHHHHHH
Q psy11025        400 RMCVRV-KEFDKAADLIRQEI  419 (535)
Q Consensus       400 el~e~~-~~y~~Aie~ye~~~  419 (535)
                      .++... +++++|++++++..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHHhCCHHHHHHHHHHHh
Confidence            666666 66666666666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.29  E-value=0.38  Score=50.32  Aligned_cols=22  Identities=27%  Similarity=0.111  Sum_probs=15.2

Q ss_pred             HHHHHHHhc----cCCHHHHHHHHHH
Q psy11025        499 VALVLVQLA----RGDTVAAEKAFKE  520 (535)
Q Consensus       499 l~a~lc~L~----~gD~V~A~~a~~~  520 (535)
                      ...+.|+..    .+|...|...|++
T Consensus       403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~  428 (490)
T 2xm6_A          403 VQLGEIYYYGLGVERDYVQAWAWFDT  428 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            345666665    6788888777765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.29  E-value=0.036  Score=48.45  Aligned_cols=46  Identities=15%  Similarity=0.102  Sum_probs=25.8

Q ss_pred             CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Q psy11025        367 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIG  420 (535)
Q Consensus       367 ~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~----~~~y~~Aie~ye~~~~  420 (535)
                      ++++|+.+|++|++.    |.    ...+..++.+|..    .+++++|+++|+++++
T Consensus        76 d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           76 DLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             CHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence            466666666666654    21    1234455566665    4566666666666543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.27  E-value=0.077  Score=45.72  Aligned_cols=100  Identities=14%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-h
Q psy11025        348 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-E  426 (535)
Q Consensus       348 ~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e  426 (535)
                      .+..+...+..|...+...++++|+.+|.+++.+.-..      ...+...|.++...++|++|+..|+++....-.. .
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            45555555666666666667999999999999875443      3466778889999999999999999997664322 2


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .+...       +.|++..|+...|...|++...
T Consensus        88 ~~~~l-------g~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           88 FPFHA-------AECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHHH-------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHcCCHHHHHHHHHHHHH
Confidence            22222       3556677888889999987443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.20  E-value=0.035  Score=54.64  Aligned_cols=84  Identities=12%  Similarity=0.038  Sum_probs=55.8

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--H---HhhHHHHHHHHHHHHHH
Q psy11025        366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH--Q---ESEHLLAIGRLAVALVL  440 (535)
Q Consensus       366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~--~---a~e~~~~a~rl~la~il  440 (535)
                      .++++|+.+|++|++.+...      ...+...+.++...|++++|..+|+++....  .   ....+...+       .
T Consensus       183 ~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~-------~  249 (308)
T 2ond_A          183 KDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL-------A  249 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH-------H
T ss_pred             CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-------H
Confidence            35778888888888876543      3566777788888899999999999987642  1   112222222       2


Q ss_pred             HHHhcCCHHHHHHHHHHhhhcc
Q psy11025        441 VQLARGDTVAAEKAFKEWGNCC  462 (535)
Q Consensus       441 ~~L~~~D~vaA~~~~e~~~~~~  462 (535)
                      .....|+...|..++++....+
T Consensus       250 ~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          250 FESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHc
Confidence            2334578877888888754433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.19  E-value=0.048  Score=47.98  Aligned_cols=91  Identities=13%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +.+|.+.+++.+|..+|.+|....-++    +.++..-+.+|...+ +++|+.+|++|+++.-..      ...+...|.
T Consensus        38 a~~y~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~  107 (150)
T 4ga2_A           38 AKLYYEAKEYDLAKKYICTYINVQERD----PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAE  107 (150)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence            344444444566666666666543222    345777788887764 999999999999885443      356788899


Q ss_pred             HHHHhhhHHHHHHHH-HHHHHHH
Q psy11025        401 MCVRVKEFDKAADLI-RQEIGYH  422 (535)
Q Consensus       401 l~e~~~~y~~Aie~y-e~~~~~~  422 (535)
                      ++...+++.+|++.| +++.++.
T Consensus       108 ~~~~~~~~~~aa~~~~~~al~l~  130 (150)
T 4ga2_A          108 LLCKNDVTDGRAKYWVERAAKLF  130 (150)
T ss_dssp             HHHHHCSSSSHHHHHHHHHHHHS
T ss_pred             HHHHcCChHHHHHHHHHHHHHhC
Confidence            999889998888765 6665544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.19  E-value=0.12  Score=41.29  Aligned_cols=93  Identities=13%  Similarity=0.045  Sum_probs=65.9

Q ss_pred             HHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHH
Q psy11025        355 VLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIG  432 (535)
Q Consensus       355 ~l~~AAk~~e-k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~  432 (535)
                      .+...+.++. ..++++|+.+|++++.+....      ...+...|.++...++|++|++.|++..+..... ..+..  
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--   77 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR--   77 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH--
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH--
Confidence            3444455554 456999999999999986543      4577888889999999999999999987664321 11222  


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        433 RLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       433 rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                           .+.+....|+...|...|++...
T Consensus        78 -----~a~~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           78 -----KAAALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             -----HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHhhHHHHHHHHHHHHH
Confidence                 22455667888889999987433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.18  E-value=0.29  Score=51.28  Aligned_cols=185  Identities=12%  Similarity=0.049  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISR-NREAASTVLEKGAKSLEEL--KSDAALTLYSRAADVAHGEDNYKQAAEYIS  396 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~-~~~~AA~~l~~AAk~~ek~--~~~eAie~y~kAaely~~egr~~~Aa~~l~  396 (535)
                      +-+++|.+.++..+-++++...-..+.. ++.-+++....-...+...  ..+.-+++..+++++-..+.|.=---..-.
T Consensus        24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~  103 (394)
T 3txn_A           24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA  103 (394)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666555555554433333 4455677666666666653  367788999999999888866433333344


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccc
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFS  476 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l  476 (535)
                      +.|.+|...|+|.+|.+++.+..+.+...+.-...-.+++-.+-++...++...+..+|.+-.                 
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~-----------------  166 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR-----------------  166 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------
Confidence            889999999999999999998877765432211111222223344556778877877776511                 


Q ss_pred             ccccccchhhhh-hhHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHH-hcCCCCc
Q psy11025        477 FSLGKAGYHQES-EHLLAIGRLAVALVLVQL-ARGDTVAAEKAFKE-WGNCCEA  527 (535)
Q Consensus       477 ~~L~l~ay~~~~-~~~~~~~~l~l~a~lc~L-~~gD~V~A~~a~~~-~~~F~~s  527 (535)
                            .....+ -.+...+.+....|+.|| +.+|+-.|-..|=+ +.+|.+.
T Consensus       167 ------~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~  214 (394)
T 3txn_A          167 ------TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV  214 (394)
T ss_dssp             ------HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT
T ss_pred             ------hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc
Confidence                  111111 235667777888999999 89999999888866 5566543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.16  E-value=0.12  Score=42.06  Aligned_cols=93  Identities=15%  Similarity=0.150  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        353 STVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       353 A~~l~~AAk~~e-k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      +..+...+.++. ..++++|+++|.+++.+....      ...+...|.++...++|++|++.|++..+..... ..+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            344444455554 456999999999999885443      4577888999999999999999999987664322 11222


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                             .+.+....++...|...|++.
T Consensus        86 -------~~~~~~~~~~~~~A~~~~~~~  106 (131)
T 2vyi_A           86 -------MGLALSSLNKHVEAVAYYKKA  106 (131)
T ss_dssp             -------HHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------HHHHHHHhCCHHHHHHHHHHH
Confidence                   224555678888899999874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.14  E-value=0.24  Score=51.94  Aligned_cols=96  Identities=16%  Similarity=0.082  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHhchHHHHHHHHHHHHHHHh------CHHHHHHHHH------------HHHHHHHh-----CCHHHHHH
Q psy11025        317 KPDAALTLYSRAADVAHGEDNYKQAAEYISR------NREAASTVLE------------KGAKSLEE-----LKSDAALT  373 (535)
Q Consensus       317 K~D~AA~lYekAA~~~eAa~af~kAA~~y~~------~~~~AA~~l~------------~AAk~~ek-----~~~~eAie  373 (535)
                      .++.|..+|++|+....+ .++...+.+|..      +...|...|.            ..+.+|..     .+.++|++
T Consensus        94 ~~~~A~~~~~~a~~~~~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  172 (490)
T 2xm6_A           94 DYAQAVIWYKKAALKGLP-QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMARE  172 (490)
T ss_dssp             CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            557888888888753221 122223333322      2233333333            33445553     35888888


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHH
Q psy11025        374 LYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGY  421 (535)
Q Consensus       374 ~y~kAaely~~egr~~~Aa~~l~kaAel~e~----~~~y~~Aie~ye~~~~~  421 (535)
                      +|++|++.    |.    ...+..++.++..    .+++++|+++|+++.+.
T Consensus       173 ~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  216 (490)
T 2xm6_A          173 WYSKAAEQ----GN----VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS  216 (490)
T ss_dssp             HHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHC----CC----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence            88888874    21    3455566777776    57888888888877643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.13  E-value=0.11  Score=51.27  Aligned_cols=94  Identities=14%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025        355 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  433 (535)
Q Consensus       355 ~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r  433 (535)
                      ++...+.++.+.+ +++|+.+|+++.++....  .  -.....-...++...++|++|+.+|++..+.+-..      ..
T Consensus       132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~--~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------~~  201 (291)
T 3mkr_A          132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDA--T--LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------LL  201 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC------HH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc--H--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc------HH
Confidence            4445566666654 888888888888774221  1  11111111233344589999999999987764321      11


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        434 LAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       434 l~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      ++...++|.+..|+...|...|++.
T Consensus       202 ~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          202 LLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2222335666778888899999873

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.11  E-value=0.073  Score=44.59  Aligned_cols=93  Identities=18%  Similarity=0.100  Sum_probs=67.0

Q ss_pred             HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHH
Q psy11025        355 VLEKGAKSL-EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIG  432 (535)
Q Consensus       355 ~l~~AAk~~-ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~  432 (535)
                      .+...|.++ ...++++|+.+|.+|+.+....      ..++...|.++...++|++|+..|+++.+..... ..+..  
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--   82 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF--   82 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH--
Confidence            344444444 4456999999999999986543      4578888999999999999999999987764331 11222  


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        433 RLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       433 rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                           ...+.+..|+...|...|++.-.
T Consensus        83 -----l~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           83 -----LGQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             -----HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhhHHHHHHHHHHHHH
Confidence                 23556667888889999987433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.08  E-value=0.014  Score=48.74  Aligned_cols=87  Identities=9%  Similarity=0.056  Sum_probs=60.3

Q ss_pred             hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      +++.+|..+|.+|.......+. -+.++..-+.++... ++++|+.+|++|+++....      ...+...|.++...|+
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~   76 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGR   76 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCC
Confidence            3455666777766553100122 345566667777665 4999999999999986554      4567778889999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy11025        408 FDKAADLIRQEIGYH  422 (535)
Q Consensus       408 y~~Aie~ye~~~~~~  422 (535)
                      |++|++.|++.....
T Consensus        77 ~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           77 YEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999886554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.04  E-value=0.12  Score=52.11  Aligned_cols=95  Identities=16%  Similarity=0.082  Sum_probs=66.6

Q ss_pred             HHHHH-HhCCHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hH
Q psy11025        359 GAKSL-EELKSDAALTLYSRAADVAHGED---------NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EH  427 (535)
Q Consensus       359 AAk~~-ek~~~~eAie~y~kAaely~~eg---------r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~  427 (535)
                      .+.++ ...++++|+.+|.+|+++.....         ....-+.++...|.++...++|++|++.|+++.++.-.. ..
T Consensus       153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a  232 (336)
T 1p5q_A          153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKG  232 (336)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            34333 44568999999999999876552         112225788889999999999999999999997764321 12


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        428 LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       428 ~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      +...       ..+++..++...|...|++...
T Consensus       233 ~~~l-------g~~~~~~g~~~~A~~~~~~al~  258 (336)
T 1p5q_A          233 LSRR-------GEAHLAVNDFELARADFQKVLQ  258 (336)
T ss_dssp             HHHH-------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHH-------HHHHHHCCCHHHHHHHHHHHHH
Confidence            2222       3456667888889999987544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.98  E-value=0.16  Score=54.71  Aligned_cols=103  Identities=13%  Similarity=0.090  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-Cc-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--hHHHH
Q psy11025        355 VLEKGAKSLEELKSDAALTLYSRAADVAHGE-DN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES--EHLLA  430 (535)
Q Consensus       355 ~l~~AAk~~ek~~~~eAie~y~kAaely~~e-gr-~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~--e~~~~  430 (535)
                      .+.+|.+...+.++++|+.+|++|.++.... |. .-.-+..+..+|.+|...|+|++|+.+|+++...+...  .....
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            4445545555566999999999999997543 22 23567888999999999999999999999998887652  11111


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      .+..+.-+..++..+|+...|...|++
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~  418 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICK  418 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            222222233556667888889988887

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.98  E-value=0.028  Score=59.42  Aligned_cols=100  Identities=10%  Similarity=-0.023  Sum_probs=77.3

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHh---cCCcHHHHHHHH
Q psy11025        324 LYSRAADVAHGEDNYKQAAEYISR----NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAH---GEDNYKQAAEYI  395 (535)
Q Consensus       324 lYekAA~~~eAa~af~kAA~~y~~----~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~---~egr~~~Aa~~l  395 (535)
                      -|.+.+.|.+|...|+++-..+.+    ..-.-+.++...+..|... ++++|+.+|++|.++|.   +..-+. -+..+
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~l  374 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV-RGVQV  374 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH-HHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH-HHHHH
Confidence            344446688899889888776644    2224677888888888765 59999999999999974   344444 45677


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        396 SRAARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       396 ~kaAel~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      .++|.+|...|+|++|..+|+++.+.+..
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999877654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.97  E-value=0.055  Score=49.24  Aligned_cols=92  Identities=13%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHhcCCc----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        362 SLEELKSDAALTLYSRAADVAHGEDN----------YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       362 ~~ek~~~~eAie~y~kAaely~~egr----------~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      ++...++++|+.+|.+|+++......          ......++...|.++...++|++|+..|+++.+..... ..+..
T Consensus        48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  127 (198)
T 2fbn_A           48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYK  127 (198)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            33445688888899988887654431          11124788899999999999999999999987764321 11222


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .       ..+++..++...|...|++...
T Consensus       128 l-------g~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A          128 L-------GVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             H-------HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHcccHHHHHHHHHHHHH
Confidence            2       2445566788779999987433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=95.96  E-value=0.051  Score=57.35  Aligned_cols=92  Identities=11%  Similarity=0.136  Sum_probs=71.6

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHhCH-----------HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHH
Q psy11025        325 YSRAADVAHGEDNYKQAAEYISRNR-----------EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAA  392 (535)
Q Consensus       325 YekAA~~~eAa~af~kAA~~y~~~~-----------~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa  392 (535)
                      |.+.+++.+|..+|.+|..+.....           ..-+.+|...|.||.+.. +++|+.+|.+|+++....      .
T Consensus       278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~  351 (457)
T 1kt0_A          278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN------E  351 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------H
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------H
Confidence            3344558899999999998875441           123567888888887765 999999999999986443      4


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        393 EYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      +.+-..|.++...++|++|+..|+++.++.
T Consensus       352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            567788999999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.004  Score=50.45  Aligned_cols=62  Identities=16%  Similarity=0.179  Sum_probs=36.1

Q ss_pred             HHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        356 LEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       356 l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      +...|.++-. .++++|+++|.+|+++....      ...+...|.++...++|++|++.|+++.+..-
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   69 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS   69 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            3333444433 34666777777776664332      34455666666666777777777777665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=95.93  E-value=0.066  Score=47.45  Aligned_cols=115  Identities=10%  Similarity=0.079  Sum_probs=74.7

Q ss_pred             hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHhh
Q psy11025        329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CVRVK  406 (535)
Q Consensus       329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel-~e~~~  406 (535)
                      +++.+|...|.++......+.    ..+...|.++... ++++|+.+|.+|+.+....      ...+...|.+ +...+
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~   93 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNS----EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQAS   93 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcC
Confidence            445556666666555432222    2455556666554 5999999999999987554      3466777887 77789


Q ss_pred             hH--HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        407 EF--DKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       407 ~y--~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      +|  ++|+.+|++..+..-.. ..+..       .+.+.+..|+...|...|++...
T Consensus        94 ~~~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           94 QHMTAQTRAMIDKALALDSNEITALML-------LASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHcccHHHHHHHHHHHHh
Confidence            98  99999999987654322 11222       22456667888889999988544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=95.90  E-value=0.14  Score=53.86  Aligned_cols=98  Identities=17%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGED---------NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-  425 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~eg---------r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-  425 (535)
                      +..+..+++..++++|+.+|.+|+++.....         ....-..++...|.++.+.++|++|++.|+++.++.-.. 
T Consensus       272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  351 (457)
T 1kt0_A          272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE  351 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence            3444444455569999999999999876542         112335788889999999999999999999997764332 


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        426 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       426 e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      ..+...       ..+++..++...|...|++.-.
T Consensus       352 ~a~~~~-------g~a~~~~g~~~~A~~~~~~al~  379 (457)
T 1kt0_A          352 KGLYRR-------GEAQLLMNEFESAKGDFEKVLE  379 (457)
T ss_dssp             HHHHHH-------HHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHH-------HHHHHHccCHHHHHHHHHHHHH
Confidence            122222       2456667888889999998544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=95.89  E-value=0.068  Score=47.38  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HHhC-CH--HHHHHHHHHHHHHHhcCCcHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKS-LEEL-KS--DAALTLYSRAADVAHGEDNYKQAAEYI  395 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~-~ek~-~~--~eAie~y~kAaely~~egr~~~Aa~~l  395 (535)
                      .-+.+|...+++.+|..+|.+|....-.+.    ..+...+.+ +... ++  ++|+.+|.+++.+....      ...+
T Consensus        49 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~  118 (177)
T 2e2e_A           49 LLGEYYLWQNDYSNSLLAYRQALQLRGENA----ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE------ITAL  118 (177)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHCSCH----HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC------HHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc------HHHH
Confidence            456677777788889999998887764443    356666777 6443 46  99999999999985443      2456


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        396 SRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       396 ~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      ...|.++...++|++|++.|++..+..
T Consensus       119 ~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          119 MLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            778899999999999999999986554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.87  E-value=0.061  Score=59.82  Aligned_cols=89  Identities=16%  Similarity=0.088  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHH
Q psy11025        355 VLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIG  432 (535)
Q Consensus       355 ~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~  432 (535)
                      ++..-+.++.. .++++|+++|++|+++--..      ...+...|.++...|+|++ ++.|+++.+..-. ...+...+
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            34444444444 45899999999999886554      3456678888899999999 9999998765422 12232322


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        433 RLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       433 rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                             .+++..|+...|...|++
T Consensus       542 -------~~~~~~g~~~~A~~~~~~  559 (681)
T 2pzi_A          542 -------RARSAEGDRVGAVRTLDE  559 (681)
T ss_dssp             -------HHHHHTTCHHHHHHHHHT
T ss_pred             -------HHHHHcCCHHHHHHHHHh
Confidence                   445567888889999986

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.85  E-value=0.093  Score=48.83  Aligned_cols=129  Identities=16%  Similarity=0.038  Sum_probs=78.2

Q ss_pred             CHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----CHHHHHH------------HHHHHHHHHHh-----CCHHHHHHH
Q psy11025        317 KPDAALTLYSRAADVAHGEDNYKQAAEYISR-----NREAAST------------VLEKGAKSLEE-----LKSDAALTL  374 (535)
Q Consensus       317 K~D~AA~lYekAA~~~eAa~af~kAA~~y~~-----~~~~AA~------------~l~~AAk~~ek-----~~~~eAie~  374 (535)
                      .+++|..+|++|+....+ .++...+.+|..     +...|..            ++...+.+|..     .++++|+.+
T Consensus        33 ~~~~A~~~~~~a~~~g~~-~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  111 (212)
T 3rjv_A           33 DYQKAEYWAQKAAAQGDG-DALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITL  111 (212)
T ss_dssp             CHHHHHHHHHHHHHTTCH-HHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence            667999999999863211 122222223221     1222333            34445566653     469999999


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-hcC---
Q psy11025        375 YSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQL-ARG---  446 (535)
Q Consensus       375 y~kAaely~~egr~~~Aa~~l~kaAel~e~----~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L-~~~---  446 (535)
                      |++|++.    |....-...+..++.++..    .+++++|+.+|+++.+...........+       .+++ ..+   
T Consensus       112 ~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg-------~~y~~g~gg~~  180 (212)
T 3rjv_A          112 LQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG-------MMFQQGEKGFI  180 (212)
T ss_dssp             HHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH-------HHHHHCBTTTB
T ss_pred             HHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHcCCCCCC
Confidence            9999874    2211335567788999988    6799999999999976621122222222       2232 223   


Q ss_pred             --CHHHHHHHHHH
Q psy11025        447 --DTVAAEKAFKE  457 (535)
Q Consensus       447 --D~vaA~~~~e~  457 (535)
                        |...|...|++
T Consensus       181 ~~d~~~A~~~~~~  193 (212)
T 3rjv_A          181 EPNKQKALHWLNV  193 (212)
T ss_dssp             CCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence              78888888886

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.84  E-value=0.17  Score=40.65  Aligned_cols=95  Identities=13%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11025        353 STVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI  431 (535)
Q Consensus       353 A~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a  431 (535)
                      +.++...+.++... ++++|+++|.++.......      ...+...|.++...++|++|+.+|++..+.......    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----   78 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE----   78 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH----
Confidence            45566666666554 5999999999999875433      346778888999999999999999998765432211    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        432 GRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       432 ~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                        .......++...++...|...|++..
T Consensus        79 --~~~~la~~~~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           79 --AWYNLGNAYYKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             --HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence              11112244556788888988888743

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=95.82  E-value=0.014  Score=60.09  Aligned_cols=187  Identities=13%  Similarity=0.037  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHh-------------CCHHHHHHHHHHHHHHHh
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNRE---AASTVLEKGAKSLEE-------------LKSDAALTLYSRAADVAH  383 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~---~AA~~l~~AAk~~ek-------------~~~~eAie~y~kAaely~  383 (535)
                      ..+.+|.+.+++.+|...|.+|...+-++..   .-|.+|.........             ...++|+.+|++|.++..
T Consensus       252 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  331 (472)
T 4g1t_A          252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND  331 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence            4556666666677888888887766543322   122333222211110             114567777777776644


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q psy11025        384 GEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE  463 (535)
Q Consensus       384 ~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~  463 (535)
                      ...      ..+...|.++...++|++|++.|+++.+........... ...++ .++....++...|+..|++.-....
T Consensus       332 ~~~------~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~Ai~~y~kal~i~~  403 (472)
T 4g1t_A          332 NLF------RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL-HLRYG-NFQLYQMKCEDKAIHHFIEGVKINQ  403 (472)
T ss_dssp             TTC------CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH-HHHHH-HHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred             chh------hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH-HHHHH-HHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            332      245567889999999999999999986543211111111 11111 1223356777779888887433211


Q ss_pred             CCCccccccccccccccccch-hhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        464 APERCESGSSSFSFSLGKAGY-HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       464 ~~~f~~sre~~~l~~L~l~ay-~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      +  ... + ...+..  +..+ ...+..-+.....+...|.|+...||.-.|...+++
T Consensus       404 ~--~~~-~-~~~~~~--l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k  455 (472)
T 4g1t_A          404 K--SRE-K-EKMKDK--LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER  455 (472)
T ss_dssp             C--CHH-H-HHHHHH--HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred             c--cHH-H-HHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1  100 0 000011  0010 011111111122335678899999999999888887

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.81  E-value=0.075  Score=44.71  Aligned_cols=87  Identities=15%  Similarity=0.090  Sum_probs=60.1

Q ss_pred             HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Q psy11025        364 EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQ  442 (535)
Q Consensus       364 ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~  442 (535)
                      ...++++|+++|++++++...   ......++...|.++...++|++|++.|++..+..-.. ..+...       ..+.
T Consensus        40 ~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------a~~~  109 (148)
T 2dba_A           40 KCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR-------SQAL  109 (148)
T ss_dssp             TTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH-------HHHH
T ss_pred             HhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH-------HHHH
Confidence            344588888888888775432   23346778888999999999999999999987664322 112222       2445


Q ss_pred             HhcCCHHHHHHHHHHhhh
Q psy11025        443 LARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       443 L~~~D~vaA~~~~e~~~~  460 (535)
                      ...++...|...|++.-.
T Consensus       110 ~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          110 EKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            556788789999987433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.77  E-value=0.068  Score=59.42  Aligned_cols=87  Identities=10%  Similarity=0.006  Sum_probs=62.1

Q ss_pred             hchHHHHHHHHHHHH-HH----HhCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q psy11025        329 ADVAHGEDNYKQAAE-YI----SRNREAASTVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMC  402 (535)
Q Consensus       329 A~~~eAa~af~kAA~-~y----~~~~~~AA~~l~~AAk~~e-k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~  402 (535)
                      +++.+|.++|.+|.. ++    ...+..+ ..+...|.++. ..++++|+++|.+|+++.-..      ...+...|.++
T Consensus       405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~  477 (681)
T 2pzi_A          405 SQPVQTLDSLRAARHGALDADGVDFSESV-ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAVAE  477 (681)
T ss_dssp             CCHHHHHHHHHHHHTC-------CCTTCS-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhhhhcccccccccccch-hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHHHH
Confidence            447889999998861 11    1123322 23444455554 456999999999999986554      35677788889


Q ss_pred             HHhhhHHHHHHHHHHHHHHH
Q psy11025        403 VRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       403 e~~~~y~~Aie~ye~~~~~~  422 (535)
                      ...++|++|++.|+++.++.
T Consensus       478 ~~~g~~~~A~~~~~~al~l~  497 (681)
T 2pzi_A          478 LLTGDYDSATKHFTEVLDTF  497 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999987664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.77  E-value=0.063  Score=44.18  Aligned_cols=92  Identities=14%  Similarity=0.066  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHH
Q psy11025        354 TVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAI  431 (535)
Q Consensus       354 ~~l~~AAk~~e-k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a  431 (535)
                      ..+...|.++. ..++++|+.+|.+++++....      ..++...|.++...++|++|+++|+++.+..-.. ..+.. 
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-   89 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR-   89 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH-
Confidence            34444455554 446899999999998875433      4678888999999999999999999987764321 12222 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        432 GRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       432 ~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                            ...+.+..++...|...|++.
T Consensus        90 ------la~~~~~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           90 ------KAAALEAMKDYTKAMDVYQKA  110 (133)
T ss_dssp             ------HHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHhhHHHHHHHHHHH
Confidence                  224556678888899999873

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.76  E-value=0.4  Score=47.05  Aligned_cols=27  Identities=7%  Similarity=0.223  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        395 ISRAARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       395 l~kaAel~e~~~~y~~Aie~ye~~~~~  421 (535)
                      +...+.++.+.|++++|++.|++..+.
T Consensus       133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A          133 MAMTVQILLKLDRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            334566666677777777777776554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.67  E-value=0.011  Score=62.95  Aligned_cols=118  Identities=14%  Similarity=0.031  Sum_probs=73.7

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q psy11025        325 YSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV  403 (535)
Q Consensus       325 YekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e  403 (535)
                      |.+.+++.+|..+|.+|....-..    +.++...|.+|.+. ++++|+++|++|+++....      ...+...|.++.
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~   85 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKGYYRRAASNM   85 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Confidence            344566778888888887664333    34566667777665 5999999999999984332      456778899999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        404 RVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       404 ~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ..++|++|++.|+++.+..-.. ......+     .+...+..++...|...+++
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~-----~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQ-----ECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHH-----HHHHHHHHHHHCCC------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-----HHHHHHHHHHHHHHhccccc
Confidence            9999999999999987764322 2222222     12113333444448788873

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.66  E-value=0.057  Score=42.88  Aligned_cols=91  Identities=14%  Similarity=0.081  Sum_probs=64.6

Q ss_pred             HHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---hhHHHHHH
Q psy11025        357 EKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE---SEHLLAIG  432 (535)
Q Consensus       357 ~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a---~e~~~~a~  432 (535)
                      ...+.++.. .++++|+.+|.+|+++....      ...+...|.++...++|++|++.|++..+..-.   ...+..  
T Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~--   81 (112)
T 2kck_A           10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA--   81 (112)
T ss_dssp             GGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH--
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH--
Confidence            344555554 45999999999999986543      345678888999999999999999998765432   111222  


Q ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHHHhhh
Q psy11025        433 RLAVALVLVQLAR-GDTVAAEKAFKEWGN  460 (535)
Q Consensus       433 rl~la~il~~L~~-~D~vaA~~~~e~~~~  460 (535)
                           ...+.+.. ++...|...|++...
T Consensus        82 -----l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           82 -----KADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             -----HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             -----HHHHHHHHhCCHHHHHHHHHHHhh
Confidence                 23556677 787779999987544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=95.63  E-value=0.3  Score=50.53  Aligned_cols=123  Identities=9%  Similarity=0.023  Sum_probs=82.3

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-K-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .+.+|.+.+++.+|..+|.+|....   |.. +.++..-+.++... . +++|+.+|.+|+.+.-..      ...+...
T Consensus       103 lg~~~~~~g~~~~Al~~~~~al~l~---P~~-~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------~~a~~~~  172 (382)
T 2h6f_A          103 FRAVLQRDERSERAFKLTRDAIELN---AAN-YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHR  172 (382)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHhC---ccC-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------HHHHHHH
Confidence            3444555556888999998887653   332 22455556666654 3 999999999999986544      3466777


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      +.++...++|++|++.|+++.++--.. ..+...+     .++..+..++.  |...|++...
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg-----~~~~~~g~~~e--Al~~~~~al~  228 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ-----WVIQEFKLWDN--ELQYVDQLLK  228 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH-----HHHHHHTCCTT--HHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHH-----HHHHHcCChHH--HHHHHHHHHH
Confidence            888888999999999999987654321 2233333     23556666665  8888887433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.34  E-value=0.064  Score=52.45  Aligned_cols=94  Identities=10%  Similarity=0.050  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|.+.+++.+|...|.+|....-.+    +..|..-|.++... ++++|+.+|.+|+++....      ...+...
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l   78 (281)
T 2c2l_A            9 EQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKAHFFL   78 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            34566777788999999999998764333    23566667777765 4999999999999874433      3567788


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      |.++...|+|++|+..|+++.++.-
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999876653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.1  Score=41.84  Aligned_cols=92  Identities=9%  Similarity=-0.028  Sum_probs=66.2

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+..|.+.+++.+|..+|.+|....   +.. ...+...+.++...+ +++|+++|.+|+++....+....-..++...+
T Consensus        10 ~g~~~~~~~~~~~A~~~~~~al~~~---p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A           10 QGNSLFKQGLYREAVHCYDQLITAQ---PQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC---CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            4555666677888888888887653   333 566777777777654 89999999999988776655666677777777


Q ss_pred             HHHHHhhhHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIR  416 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye  416 (535)
                      .++...++++.|++.|+
T Consensus        86 ~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           86 LAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHhHhhhHhHHH
Confidence            77777777766665544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=95.25  E-value=0.14  Score=43.24  Aligned_cols=91  Identities=11%  Similarity=0.053  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRL  434 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl  434 (535)
                      +..+..++...++++|+.+|++|+.+.-..      ...+...|.++...|++++|+..|+++.++.-.. +.+..    
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~----   90 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA----   90 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----
Confidence            444455555667999999999999986554      3466778889999999999999999987664321 12222    


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                       +  ..++...|+...|...|++..
T Consensus        91 -l--a~~~~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           91 -L--AVSHTNEHNANAALASLRAWL  112 (121)
T ss_dssp             -H--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -H--HHHHHHcCCHHHHHHHHHHHH
Confidence             2  234445566666888888743

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.22  E-value=0.18  Score=53.44  Aligned_cols=94  Identities=12%  Similarity=0.052  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR  433 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r  433 (535)
                      .+...+.+++.. ++++|..+|++|+++....  +   ...+...+.++.+.|++++|.++|+++.+.....      ..
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------~~  391 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDID--P---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HH  391 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC------TH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCccccC--c---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc------hH
Confidence            444455566554 4899999999999863221  2   2467778888888899999999999986532110      01


Q ss_pred             HHHHH-HHHHHhcCCHHHHHHHHHHhh
Q psy11025        434 LAVAL-VLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       434 l~la~-il~~L~~~D~vaA~~~~e~~~  459 (535)
                      ..++. .++....|+...|..+|++.-
T Consensus       392 ~~~~~a~~~~~~~~~~~~A~~~~e~al  418 (530)
T 2ooe_A          392 VYVTAALMEYYCSKDKSVAFKIFELGL  418 (530)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            11111 122334788888989988743

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=95.18  E-value=0.15  Score=52.42  Aligned_cols=92  Identities=10%  Similarity=0.065  Sum_probs=62.3

Q ss_pred             HHHhCCHHHHHHHHHHHHHHHhcC----------CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        362 SLEELKSDAALTLYSRAADVAHGE----------DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       362 ~~ek~~~~eAie~y~kAaely~~e----------gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      +++..++++|+.+|++|++++...          .....-..++...|.++...++|++|++.|+++.+..-.. ..+..
T Consensus       233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  312 (370)
T 1ihg_A          233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR  312 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            334445778888888888765432          0234456788899999999999999999999987654221 11222


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                             ...+++..++...|...|++...
T Consensus       313 -------lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          313 -------RAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             -------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHccCHHHHHHHHHHHHH
Confidence                   22455667788889999987433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=95.13  E-value=0.3  Score=45.00  Aligned_cols=100  Identities=15%  Similarity=0.220  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC----------CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        354 TVLEKGAKSLEELKSDAALTLYSRAADVAHGE----------DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       354 ~~l~~AAk~~ek~~~~eAie~y~kAaely~~e----------gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      ..+.++...+...++++|+.+|.+|+.+.-..          .....+.......|.++...|+|++|+..|+++.+..-
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   85 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP   85 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            44566666667777888888888888763221          11112223334488999999999999999999876653


Q ss_pred             Hh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        424 ES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       424 a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .. +.+...+       .+.+..|+...|...|++.-.
T Consensus        86 ~~~~~~~~lg-------~~~~~~g~~~~A~~~~~~al~  116 (208)
T 3urz_A           86 NNVDCLEACA-------EMQVCRGQEKDALRMYEKILQ  116 (208)
T ss_dssp             TCHHHHHHHH-------HHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHH
Confidence            22 2233333       445567888889999998544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.08  E-value=0.17  Score=49.49  Aligned_cols=29  Identities=14%  Similarity=0.127  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        394 YISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       394 ~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      .+...|.++...|++++|++.|++..+..
T Consensus       221 ~~~~la~~l~~~g~~~~A~~~l~~~l~~~  249 (287)
T 3qou_A          221 LATQLALQLHQVGRNEEALELLFGHLRXD  249 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence            34455666667788888888888776553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.08  E-value=0.19  Score=53.10  Aligned_cols=92  Identities=13%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHHHHHHhcC-C-cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHH
Q psy11025        366 LKSDAALTLYSRAADVAHGE-D-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES--EHLLAIGRLAVALVLV  441 (535)
Q Consensus       366 ~~~~eAie~y~kAaely~~e-g-r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~--e~~~~a~rl~la~il~  441 (535)
                      .++++|+.+|++|.++.... | ..-.-+..+..+|.+|...|+|++|+.+|+++...+...  ......+..+.-+..+
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            35899999999999996543 2 223566888999999999999999999999998887652  1111222222223355


Q ss_pred             HHhcCCHHHHHHHHHH
Q psy11025        442 QLARGDTVAAEKAFKE  457 (535)
Q Consensus       442 ~L~~~D~vaA~~~~e~  457 (535)
                      +..+|+...|...|++
T Consensus       392 ~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          392 YMGLENKAAGEKALKK  407 (433)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHH
Confidence            6677888889888886

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.90  E-value=0.2  Score=41.01  Aligned_cols=82  Identities=12%  Similarity=-0.046  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHH
Q psy11025        333 HGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA  411 (535)
Q Consensus       333 eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~A  411 (535)
                      +|...|.++....   +.. +..+...|.++... ++++|+.+|++|+.+....      ...+...|.++...|++++|
T Consensus         3 ~a~~~~~~al~~~---p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            3 AITERLEAMLAQG---TDN-MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CHHHHHHHHHTTT---CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhC---CCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHH
Confidence            3455566654432   222 23455666666654 5999999999999985443      34667889999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy11025        412 ADLIRQEIGYHQE  424 (535)
Q Consensus       412 ie~ye~~~~~~~a  424 (535)
                      +..|+++.+....
T Consensus        73 ~~~~~~al~~~~~   85 (115)
T 2kat_A           73 RQAWESGLAAAQS   85 (115)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc
Confidence            9999998776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=94.72  E-value=0.11  Score=46.34  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhcCC
Q psy11025        371 ALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE---SEHLLAIGRLAVALVLVQLARGD  447 (535)
Q Consensus       371 Aie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a---~e~~~~a~rl~la~il~~L~~~D  447 (535)
                      |+.+|++|+++.-..      ...+...|.++...|+|++|+..|++..+..-.   .......     +.++..+...|
T Consensus        93 a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l-----~~~~~~~g~~~  161 (176)
T 2r5s_A           93 ELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF-----MDILSALGQGN  161 (176)
T ss_dssp             HHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH-----HHHHHHHCSSC
T ss_pred             HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH-----HHHHHHhCCCC
Confidence            455555555543322      244556677777889999999999887654321   1122222     22344554445


Q ss_pred             HHHHHHHHHH
Q psy11025        448 TVAAEKAFKE  457 (535)
Q Consensus       448 ~vaA~~~~e~  457 (535)
                      .  |...|++
T Consensus       162 ~--A~~~y~~  169 (176)
T 2r5s_A          162 A--IASKYRR  169 (176)
T ss_dssp             H--HHHHHHH
T ss_pred             c--HHHHHHH
Confidence            4  7778775

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=94.69  E-value=0.11  Score=51.93  Aligned_cols=132  Identities=11%  Similarity=-0.012  Sum_probs=86.4

Q ss_pred             CCHH----HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHH
Q psy11025        316 LKPD----AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQA  391 (535)
Q Consensus       316 ~K~D----~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~A  391 (535)
                      +.++    .-|.+|...+.+.+|..+|..+..   ..+... -.|..+.-+++...+++|+.+|.++..+-    .+...
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~~~~  170 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DKFLA  170 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC----CcccH
Confidence            4556    455667777778888877766543   235545 66888888888888999999998664321    23344


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      +...-..+.+++..|++++|+..|+++...-.. -....-+.+..+  +|....|+...|..+|++.
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~-P~~~~da~~~~g--laL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAG-EACARAIAWYLA--MARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT-TTTHHHHHHHHH--HHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC-ccccHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Confidence            556667788899999999999999998631110 000111222232  4444557777799999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=94.66  E-value=0.23  Score=51.43  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=62.9

Q ss_pred             HHHHHHHhc-hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        322 LTLYSRAAD-VAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       322 A~lYekAA~-~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      +.+|.+.+. +.+|..+|.+|....-++.    .++..-+.++... ++++|+.+|.+|+++--..      ..++...+
T Consensus       138 g~~l~~~g~d~~eAl~~~~~al~l~P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg  207 (382)
T 2h6f_A          138 RVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQ  207 (382)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHH
Confidence            344444554 6666666666665433332    2455556666654 4899999999999875443      34566778


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      .++...|+|++|++.|+++.++.
T Consensus       208 ~~~~~~g~~~eAl~~~~~al~l~  230 (382)
T 2h6f_A          208 WVIQEFKLWDNELQYVDQLLKED  230 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HHHHHcCChHHHHHHHHHHHHhC
Confidence            88888999999999999987664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=94.61  E-value=0.22  Score=52.45  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-C-cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--hHHH
Q psy11025        354 TVLEKGAKSLEELKSDAALTLYSRAADVAHGE-D-NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES--EHLL  429 (535)
Q Consensus       354 ~~l~~AAk~~ek~~~~eAie~y~kAaely~~e-g-r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~--e~~~  429 (535)
                      ..+....++..+..+++|+++|+++.+++... | ..-.-+..+..+|.+|...|+|++|+.+|+++...+...  ....
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            44555556666667999999999999885432 2 223567889999999999999999999999998887652  1122


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        430 AIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       430 ~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      ..+..+.-+..++...|+...|...|++
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            2222222233556677888889888887

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=94.40  E-value=1  Score=47.12  Aligned_cols=75  Identities=7%  Similarity=-0.003  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy11025        366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-----EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL  440 (535)
Q Consensus       366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~-----~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il  440 (535)
                      .++++|+.+|++|++.    |.    ...+..+|.+|.. |     ++++|+++|++++  ..........+       .
T Consensus       265 ~d~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg-------~  326 (452)
T 3e4b_A          265 GDVEQMMKYLDNGRAA----DQ----PRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV--GREVAADYYLG-------Q  326 (452)
T ss_dssp             CCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT--TTCHHHHHHHH-------H
T ss_pred             CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh--CCCHHHHHHHH-------H
Confidence            3466666666666642    11    2234455556663 4     8888999888887  11122222222       2


Q ss_pred             HHHh----cCCHHHHHHHHHHh
Q psy11025        441 VQLA----RGDTVAAEKAFKEW  458 (535)
Q Consensus       441 ~~L~----~~D~vaA~~~~e~~  458 (535)
                      +++.    ..|...|...|++-
T Consensus       327 ~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          327 IYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             HHHTTTTSSCCHHHHHHHHHHH
T ss_pred             HHHCCCCCCcCHHHHHHHHHHH
Confidence            2222    22777787777763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.40  E-value=0.23  Score=43.14  Aligned_cols=84  Identities=17%  Similarity=0.191  Sum_probs=57.9

Q ss_pred             HHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025        359 GAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGR  433 (535)
Q Consensus       359 AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~----~~~y~~Aie~ye~~~~~~~a~e~~~~a~r  433 (535)
                      .+.+|... +.++|+++|++|++.    |.    ...+-.++.+|..    .+++++|+++|+++++.-.. ......+ 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~-~a~~~Lg-  100 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQ-DGCLILG-  100 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHH-
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCH-HHHHHHH-
Confidence            56666654 467799999999986    22    3456678888887    68999999999999765221 1122222 


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHh
Q psy11025        434 LAVALVLVQLA----RGDTVAAEKAFKEW  458 (535)
Q Consensus       434 l~la~il~~L~----~~D~vaA~~~~e~~  458 (535)
                            .++..    ..|...|...|++-
T Consensus       101 ------~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A          101 ------YKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             ------HHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             ------HHHHCCCCCCcCHHHHHHHHHHH
Confidence                  33444    67888888888863

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.32  E-value=0.41  Score=50.65  Aligned_cols=126  Identities=10%  Similarity=-0.011  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+.++++.+++.+|...|.+|..+.   +...+..+...+.++... +.++|.++|.+|.+.....      ...+...
T Consensus       326 ~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------~~~~~~~  396 (530)
T 2ooe_A          326 AYADYEESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTA  396 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSS---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC------THHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhCcc---ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc------hHHHHHH
Confidence            34555555566667777777766532   222234566666666544 4788999999888753221      1222233


Q ss_pred             HHH-HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        399 ARM-CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       399 Ael-~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      |.+ +...|++++|..+|++..+.+-...      .+++..+-+....|+...|..+|++.-.
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~------~~~~~~~~~~~~~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKYGDIP------EYVLAYIDYLSHLNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHCCCCH------HHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence            333 2346899999999999987664321      1122222334567888889999998443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.23  E-value=0.41  Score=38.68  Aligned_cols=64  Identities=17%  Similarity=0.118  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      .+...|.++... ++++|+.+|++|+++.-...      ..+...|.++...++|++|++.|+++.++...
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            344555566554 58999999999998865542      26677888888899999999999988766443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.10  E-value=0.084  Score=53.25  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHHHHhCH--------HHH-----HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025        331 VAHGEDNYKQAAEYISRNR--------EAA-----STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS  396 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~~~--------~~A-----A~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~  396 (535)
                      +.+|..+|.+|..+.....        ..+     ..+|...|.+|.+.+ +++|+.+|.+|+++....      .+.+.
T Consensus       195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~  268 (338)
T 2if4_A          195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN------PKALF  268 (338)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence            6777777777776532211        011     136677777777654 899999999999875432      45677


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        397 RAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       397 kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      ..|.++...++|++|++.|+++.++.
T Consensus       269 ~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          269 RRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            88888988999999999999886554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.04  E-value=0.33  Score=39.31  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQ  390 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~  390 (535)
                      .-+.+|.+.+++.+|..+|.+|....-....    ++...|.+|...+ +++|+++|++|+++....+....
T Consensus        12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A           12 ALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            4567788888899999999999876543333    5667788887764 99999999999998766655443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=93.97  E-value=0.23  Score=50.06  Aligned_cols=85  Identities=16%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHHHHh------cCCcHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Q psy11025        367 KSDAALTLYSRAADVAH------GEDNYKQAA-----EYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRL  434 (535)
Q Consensus       367 ~~~eAie~y~kAaely~------~egr~~~Aa-----~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl  434 (535)
                      ++++|+.+|.+|+.+..      ..|+...+.     .++...|.++...++|++|++.|+++.+..-.. ..+...   
T Consensus       194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l---  270 (338)
T 2if4_A          194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR---  270 (338)
T ss_dssp             CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence            35556666666555422      222222222     377888989999999999999999987654321 222222   


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                          ..+++..++...|...|++.
T Consensus       271 ----g~a~~~~g~~~~A~~~l~~a  290 (338)
T 2if4_A          271 ----GKAKAELGQMDSARDDFRKA  290 (338)
T ss_dssp             ----HHHHHTTTCHHHHHHHHHHT
T ss_pred             ----HHHHHHcCCHHHHHHHHHHH
Confidence                35566778888899999874

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.91  E-value=0.35  Score=37.08  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        353 STVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       353 A~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      +..+...+.++.. .++++|+.+|.+|+++....      ...+...|.++...++|++|++.|+++.+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3444555555544 45999999999999875433      3467788889999999999999999887653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.86  E-value=0.4  Score=42.63  Aligned_cols=120  Identities=11%  Similarity=0.037  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      .-+..|.+.+++.+|...|.+|....   |+. +.++..-+.++... ++++|+.+|+++..... .  + .....   .
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~---P~~-~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~-~~~~~---~   79 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDEL---QSR-GDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--N-SYKSL---I   79 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHH---HTS-HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--H-HHHHH---H
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--h-HHHHH---H
Confidence            45566666677777777777765433   332 55666666666654 48888888887765543 2  1 11111   1


Q ss_pred             HHHH-HHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        399 ARMC-VRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       399 Ael~-e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      +.+. .......+|++.|++..+..-. .......       ..+.+..|+...|...|++
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~  133 (176)
T 2r5s_A           80 AKLELHQQAAESPELKRLEQELAANPDNFELACEL-------AVQYNQVGRDEEALELLWN  133 (176)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcccHHHHHHHHHH
Confidence            2221 1112333467777666544322 1122222       2344556777777777765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=93.60  E-value=0.6  Score=42.62  Aligned_cols=53  Identities=15%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHhh
Q psy11025        368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV-----------KEFDKAADLIRQEIGYHQESE  426 (535)
Q Consensus       368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~-----------~~y~~Aie~ye~~~~~~~a~e  426 (535)
                      +++|+.+|++|+++--..      .+.+-..+..|...           ++|++|++.|+++.++--...
T Consensus        62 ~~eAi~~le~AL~ldP~~------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKK------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            568888888888874432      12233334444332           589999999988876644333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.54  E-value=0.94  Score=44.04  Aligned_cols=53  Identities=13%  Similarity=0.032  Sum_probs=22.7

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q psy11025        324 LYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAAD  380 (535)
Q Consensus       324 lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAae  380 (535)
                      .+.+.+++.+|...|.+|....-++.    .++...|.++... ++++|+.+|+++..
T Consensus       126 ~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          126 QLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            33333445555555555443322221    1233334444333 25555555555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.39  E-value=0.34  Score=39.97  Aligned_cols=71  Identities=13%  Similarity=0.062  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr-~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      |-.||.-+-.+|...++..|+..|++|.+.+..+.. ...-.+++...|..+-+.|++++|+.+|+++.++-
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            445777777777888899999999999999865421 12234788889999999999999999999986543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.15  E-value=0.65  Score=45.14  Aligned_cols=92  Identities=18%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRL  434 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl  434 (535)
                      +..+-..+...++++|+.+|.+|+.+....      ...+...|.++...++|++|++.|+++.+..-.. ..+..    
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----   77 (281)
T 2c2l_A            8 KEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF----   77 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH----
Confidence            334444445556999999999999985543      4577788999999999999999999987653221 11222    


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                         .+.+++..|+...|...|++.-.
T Consensus        78 ---lg~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           78 ---LGQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             ---HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHcCCHHHHHHHHHHHHH
Confidence               22445566788779888887433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=93.04  E-value=0.45  Score=37.51  Aligned_cols=62  Identities=11%  Similarity=0.067  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      |..|-..+...++++|+++|++|+++....     +...+...|.++...++|++|++.|+++.+..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG-----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            344444555566888888888888875433     11266777888888889999999988886554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.88  E-value=0.24  Score=52.16  Aligned_cols=107  Identities=7%  Similarity=0.066  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccc
Q psy11025        393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGS  472 (535)
Q Consensus       393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre  472 (535)
                      +.+.+.|+++.+.|+|++|+++|.+.-+.....+.....   ++..+-+.+..+|...+...+.+...            
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~---~l~~irl~l~~~d~~~~~~~~~ka~~------------  196 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDV---MLTIARLGFFYNDQLYVKEKLEAVNS------------  196 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHH---HHHHHHHHHHHTCHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHH---HHHHHHHHHHhccHHHHHHHHHHHHH------------
Confidence            355566677777777777777776665554333222111   12222334455666666655554211            


Q ss_pred             ccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-hcCCC
Q psy11025        473 SSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE-WGNCC  525 (535)
Q Consensus       473 ~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~-~~~F~  525 (535)
                                 ......++...+++-...|+.+|+.+|+-.|-+.|-+ +++|.
T Consensus       197 -----------~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          197 -----------MIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             -----------HHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             -----------hhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence                       1112223344445555566777777777776666655 34443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.75  E-value=1.1  Score=49.37  Aligned_cols=102  Identities=13%  Similarity=0.077  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHH------HhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADV------AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH  427 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAael------y~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~  427 (535)
                      ...++|+++.+. +.+.|..||.++-++      |...|..    +.+.+++++.+..+++..|..+|.+.++.-.+.+.
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~----~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~  758 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNK----EGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDL  758 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCH----HHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHH
Confidence            456667666654 588888888875332      4444433    34667888888888999999999888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        428 LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       428 ~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      +...+++-.|+.+++-..-.......++++|+.
T Consensus       759 ~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~  791 (814)
T 3mkq_A          759 LIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKE  791 (814)
T ss_dssp             HHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            888888877777777654344112355555554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.67  E-value=0.31  Score=44.54  Aligned_cols=106  Identities=9%  Similarity=0.118  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhch-HHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhc----
Q psy11025        318 PDAALTLYSRAADV-AHGEDNYKQAAEYISR-----NREAASTVLEKGAKSLEE---LKSDAALTLYSRAADVAHG----  384 (535)
Q Consensus       318 ~D~AA~lYekAA~~-~eAa~af~kAA~~y~~-----~~~~AA~~l~~AAk~~ek---~~~~eAie~y~kAaely~~----  384 (535)
                      +|+|..+|++|-.. .+-+++|..-+.++..     ....|-..+.+|..+|++   .+|+.+-.+|..+.-++..    
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~   97 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   97 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence            35788888877541 1222333333334432     223344445566666654   2444444444444444332    


Q ss_pred             ------CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        385 ------EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       385 ------egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                            .|++..|.+|++++.++--....|.+|+++.+++.+++.
T Consensus        98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~~  142 (158)
T 1zu2_A           98 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHA  142 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHH
T ss_pred             cchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhccC
Confidence                  256778888888888777667788888888888776654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=92.67  E-value=0.39  Score=37.94  Aligned_cols=62  Identities=10%  Similarity=0.090  Sum_probs=46.5

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE  385 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e  385 (535)
                      -+..|.+.+++.+|...|.++....-.+   +...+...|.++... ++++|+++|++|+++.-..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            4567778889999999999988764322   222566667777665 5999999999999986555

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=92.35  E-value=0.73  Score=37.54  Aligned_cols=64  Identities=11%  Similarity=0.105  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCc
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDN  387 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr  387 (535)
                      .-+.+|.+.+++.+|..+|.+|..+.-..    +.++...|.++... ++++|+.+|++|+++....+.
T Consensus        24 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           24 TLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence            45667777777888888888887654333    22455566666654 488888888888888765544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=91.72  E-value=1  Score=47.93  Aligned_cols=88  Identities=9%  Similarity=0.137  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHH--
Q psy11025        317 KPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEY--  394 (535)
Q Consensus       317 K~D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~--  394 (535)
                      ++++|..+|.++.+|.+=++|       +.+.++     |..|..++++.+   .+..+..++..+...|.++.|-.|  
T Consensus       137 ~yeeA~~~Y~~a~n~~~LA~~-------L~~Lg~-----yq~AVea~~KA~---~~~~Wk~v~~aCv~~~ef~lA~~~~l  201 (449)
T 1b89_A          137 MYDAAKLLYNNVSNFGRLAST-------LVHLGE-----YQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGL  201 (449)
T ss_dssp             CTTTHHHHHHHTTCHHHHHHH-------HHTTTC-----HHHHHHHHHHHT---CHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred             CHHHHHHHHHHhhhHHHHHHH-------HHHhcc-----HHHHHHHHHHcC---CchhHHHHHHHHHHcCcHHHHHHHHH
Confidence            446777777777554443333       332222     222222222221   123334444444444545555432  


Q ss_pred             --------HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11025        395 --------ISRAARMCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       395 --------l~kaAel~e~~~~y~~Aie~ye~~~  419 (535)
                              +..++.+|++.|.+++|+.+|+...
T Consensus       202 ~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          202 HIVVHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                    3456778888999999999998874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=91.56  E-value=0.8  Score=37.68  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHhch----HHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHH
Q psy11025        317 KPDAALTLYSRAADV----AHGEDNYKQAAEYISRN--REAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQ  390 (535)
Q Consensus       317 K~D~AA~lYekAA~~----~eAa~af~kAA~~y~~~--~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~  390 (535)
                      ++++|..+|++|-..    ..-..++...+.+|...  .+.|..+|.+|.+..    |+. ...+..-+.+|...|++..
T Consensus         5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~-~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNH-QALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-HHHHHHHHHHHHHHTCHHH
T ss_pred             cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCc-hHHHHHHHHHHHHcCCHHH
Confidence            345677777776654    45566666666666543  334555555544432    222 2233334455555666677


Q ss_pred             HHHHHHHHHHHHH---HhhhHHHHHHHHHH
Q psy11025        391 AAEYISRAARMCV---RVKEFDKAADLIRQ  417 (535)
Q Consensus       391 Aa~~l~kaAel~e---~~~~y~~Aie~ye~  417 (535)
                      |..++.++.++.-   ....|.+|+..|..
T Consensus        80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            7766666665532   13455666665543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=91.50  E-value=1.4  Score=33.47  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHh
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAH  383 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~  383 (535)
                      .-+.+|.+.+++.+|...|.+|......+    ...+...+.++... ++++|+.+|++|+++..
T Consensus        14 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A           14 NLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34566777778899999999988764333    23566667777665 49999999999998754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.96  E-value=4.7  Score=42.49  Aligned_cols=176  Identities=11%  Similarity=0.057  Sum_probs=93.4

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH--hcCCcH---HHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVA--HGEDNY---KQAAE  393 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely--~~egr~---~~Aa~  393 (535)
                      .-..++.++++|....+.+.--..-+-..+...+.....+-..+.+.. .+.  +....-++..  ..+|+.   ..-++
T Consensus        61 ~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erar  138 (445)
T 4b4t_P           61 KIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERAR  138 (445)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHH
Confidence            456677777777766554432221111123323333333334443321 222  2222222221  233442   23567


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccc
Q psy11025        394 YISRAARMCVRVKEFDKAADLIRQEI-GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGS  472 (535)
Q Consensus       394 ~l~kaAel~e~~~~y~~Aie~ye~~~-~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre  472 (535)
                      +-.+.|.+++..|+|.+|++++...- +.+...+...+. .+.+-.+-+++..+|.+.|...+.+.-.            
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv-e~~l~q~rl~l~~~d~~~a~~~~~ki~~------------  205 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI-QFILEQMELSILKGDYSQATVLSRKILK------------  205 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH------------
Confidence            78899999999999999999998874 222222111111 1222222335678999999888876311            


Q ss_pred             ccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        473 SSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       473 ~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                .+...........+...-.|.++++.+|+..|-+.|-+
T Consensus       206 ----------~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e  243 (445)
T 4b4t_P          206 ----------KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE  243 (445)
T ss_dssp             ----------HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ----------hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                      01111112333444456668888888888888877765

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.18  E-value=6.9  Score=39.48  Aligned_cols=179  Identities=15%  Similarity=0.062  Sum_probs=85.1

Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        323 TLYSRAADVAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       323 ~lYekAA~~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      +.-..+|++.||-..|.--+.=|.+  ..++|...+.+.|..+-+.+ ...|+++-.--++.|...+-.- ..+.+.++.
T Consensus        21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~-~~~~~~rl~   99 (312)
T 2wpv_A           21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV-DDISVARLV   99 (312)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-SHHHHHHHH
T ss_pred             HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence            3344556677777666555444432  33456666666666554433 5566666555556655554221 233555555


Q ss_pred             HHHHHhhhHH-HHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccc
Q psy11025        400 RMCVRVKEFD-KAADLIRQEIGYHQES--------EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCES  470 (535)
Q Consensus       400 el~e~~~~y~-~Aie~ye~~~~~~~a~--------e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~s  470 (535)
                      +|+.....-+ .=..+..++..|....        +.....+       ......++...|..-|-    ++.+    .+
T Consensus       100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a-------~~~~~e~~~~~A~~H~i----~~~~----~s  164 (312)
T 2wpv_A          100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG-------SKLLEGDFVYEAERYFM----LGTH----DS  164 (312)
T ss_dssp             HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH-------HHHHHTTCHHHHHHHHH----TSCH----HH
T ss_pred             HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH-------HHHhhcCCHHHHHHHHH----hCCC----cc
Confidence            5553310000 0012222223332211        1111112       12223455555555442    0000    00


Q ss_pred             ccccccccccccchhhhh--hhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        471 GSSSFSFSLGKAGYHQES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       471 re~~~l~~L~l~ay~~~~--~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                       -..+...  +..+....  +..+..+-....+||.+||.++.-.|...+..
T Consensus       165 -~~~~a~~--l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~  213 (312)
T 2wpv_A          165 -MIKYVDL--LWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDI  213 (312)
T ss_dssp             -HHHHHHH--HHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             -HHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence             0011111  22232221  23455666678899999999999999999886

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=89.96  E-value=2.8  Score=43.62  Aligned_cols=122  Identities=16%  Similarity=0.033  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHhchHHHHHHHHHHHHH-H--H--hCHHHHHHHHH------------HHHHHHHhC-----CHHHHHHH
Q psy11025        317 KPDAALTLYSRAADVAHGEDNYKQAAEY-I--S--RNREAASTVLE------------KGAKSLEEL-----KSDAALTL  374 (535)
Q Consensus       317 K~D~AA~lYekAA~~~eAa~af~kAA~~-y--~--~~~~~AA~~l~------------~AAk~~ek~-----~~~eAie~  374 (535)
                      .++.|..+|++|+ . .-..++...+.+ |  .  +....|...|.            ..+.+|...     ++++|+.+
T Consensus       232 d~~~A~~~~~~aa-~-g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          232 DEKTAQALLEKIA-P-GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAH  309 (452)
T ss_dssp             CHHHHHHHHHHHG-G-GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHc-C-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            5678999999987 2 222222333333 2  1  12233444443            445566654     78999999


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh----cC
Q psy11025        375 YSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA----RG  446 (535)
Q Consensus       375 y~kAaely~~egr~~~Aa~~l~kaAel~e~----~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~----~~  446 (535)
                      |++|+     .|..    ..+..+|.+|..    ..++++|+.+|+++++.-.. +.....+       .++..    ..
T Consensus       310 ~~~Aa-----~g~~----~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~-~A~~~Lg-------~~y~~G~g~~~  372 (452)
T 3e4b_A          310 FEKAV-----GREV----AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN-SADFAIA-------QLFSQGKGTKP  372 (452)
T ss_dssp             HHTTT-----TTCH----HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT-THHHHHH-------HHHHSCTTBCC
T ss_pred             HHHHh-----CCCH----HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH-HHHHHHH-------HHHHhCCCCCC
Confidence            99999     3322    345667788876    34999999999998764221 1222222       22221    34


Q ss_pred             CHHHHHHHHHH
Q psy11025        447 DTVAAEKAFKE  457 (535)
Q Consensus       447 D~vaA~~~~e~  457 (535)
                      |.+.|...|++
T Consensus       373 d~~~A~~~~~~  383 (452)
T 3e4b_A          373 DPLNAYVFSQL  383 (452)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            77778777775

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=89.63  E-value=0.38  Score=51.17  Aligned_cols=21  Identities=14%  Similarity=0.042  Sum_probs=13.3

Q ss_pred             HHHHHHhccCCHHHHHHHHHH
Q psy11025        500 ALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       500 ~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      .++-++...|-...|-+.|+.
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~  232 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEA  232 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHH
Confidence            345566677777777666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=89.47  E-value=6.5  Score=39.62  Aligned_cols=130  Identities=11%  Similarity=0.024  Sum_probs=75.7

Q ss_pred             HHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11025        357 EKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA  435 (535)
Q Consensus       357 ~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~  435 (535)
                      .-+|.++.. .++++|++++.+.++.    |......+++..+++++.+.++++.|.+.+++..+.....-.-.....+.
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            345565554 4589999999876331    11134567788888999999999999999987654432100001111122


Q ss_pred             HHHHHHHHhcC--CHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHH
Q psy11025        436 VALVLVQLARG--DTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVA  513 (535)
Q Consensus       436 la~il~~L~~~--D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~  513 (535)
                      ++...+.|..|  +...|..+|++...   .                   |-    ++. ...+ +..  |++.+|++..
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~---~-------------------~p----~~~-~~~l-Lln--~~~~~g~~~e  229 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQ---T-------------------FP----TWK-TQLG-LLN--LHLQQRNIAE  229 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHT---T-------------------SC----SHH-HHHH-HHH--HHHHHTCHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHH---h-------------------CC----Ccc-cHHH-HHH--HHHHcCCHHH
Confidence            22334455444  55557777776322   1                   10    000 1122 232  8999999999


Q ss_pred             HHHHHHH
Q psy11025        514 AEKAFKE  520 (535)
Q Consensus       514 A~~a~~~  520 (535)
                      |+..|+.
T Consensus       230 Ae~~L~~  236 (310)
T 3mv2_B          230 AQGIVEL  236 (310)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=89.46  E-value=0.92  Score=48.01  Aligned_cols=82  Identities=16%  Similarity=0.184  Sum_probs=59.2

Q ss_pred             hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Q psy11025        365 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQL  443 (535)
Q Consensus       365 k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L  443 (535)
                      ..++++|+++|++|+++....      +..+...|.++...++|++|++.|+++.+..-.. ..+...+       .+++
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg-------~~~~   85 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA-------ASNM   85 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH-------HHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHH
Confidence            345999999999999985443      5678889999999999999999999987653221 1222222       3445


Q ss_pred             hcCCHHHHHHHHHHhh
Q psy11025        444 ARGDTVAAEKAFKEWG  459 (535)
Q Consensus       444 ~~~D~vaA~~~~e~~~  459 (535)
                      ..|+...|...|++.-
T Consensus        86 ~~g~~~eA~~~~~~al  101 (477)
T 1wao_1           86 ALGKFRAALRDYETVV  101 (477)
T ss_dssp             HHTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            5677777888888743

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.39  E-value=10  Score=38.71  Aligned_cols=172  Identities=15%  Similarity=0.095  Sum_probs=82.8

Q ss_pred             HHHhch---HHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        326 SRAADV---AHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       326 ekAA~~---~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      ..+|++   +||-..|.--+.=|.+  .-++|.+.+.+.|..+-+.+ ...|+++-.--++.|...+-.- ..+.+.++.
T Consensus        23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~-~~~~~~rL~  101 (336)
T 3lpz_A           23 IAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRV-DGASRGKLL  101 (336)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHH
T ss_pred             HhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence            345667   6666666555544432  33456666666665555443 5556666555555555443211 114555555


Q ss_pred             HHHHHhh--hHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccc
Q psy11025        400 RMCVRVK--EFDKAADLIRQEIGYHQESE--------HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCE  469 (535)
Q Consensus       400 el~e~~~--~y~~Aie~ye~~~~~~~a~e--------~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~  469 (535)
                      +|+....  ..++ ..+..++..|....+        .....+       .+....++...|..-|-    ++       
T Consensus       102 ~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig-------~~~~~e~~~~~Ae~H~i----lg-------  162 (336)
T 3lpz_A          102 GCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVG-------TLYVEEGEFEAAEKHLV----LG-------  162 (336)
T ss_dssp             HHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHH-------HHHHHTTCHHHHHHHHT----TS-------
T ss_pred             HHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHH-------HHHHccCCHHHHHHHHH----hc-------
Confidence            5554311  1111 223333333332211        111111       12223345554544441    11       


Q ss_pred             cccc--cccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        470 SGSS--SFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       470 sre~--~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                      +.++  .+...  +-.+..... .....-....+||++||.++...|..+++.
T Consensus       163 ~~~s~~~~a~m--L~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~  212 (336)
T 3lpz_A          163 TKESPEVLARM--EYEWYKQDE-SHTAPLYCARAVLPYLLVANVRAANTAYRI  212 (336)
T ss_dssp             CTTHHHHHHHH--HHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCchHHHHHHH--HHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            1121  21222  223322222 344566668899999999999999998765

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.20  E-value=2.8  Score=43.83  Aligned_cols=128  Identities=11%  Similarity=0.089  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      +=|+.|.+.|++.+|.++|.++-+-....++-.-.++....-++...|+..+...+.+|-.++...|....-+.+..-.|
T Consensus       136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g  215 (429)
T 4b4t_R          136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG  215 (429)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence            56789999999999999999876543334443444555555566677899999999999999888877766666655555


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT  448 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~  448 (535)
                      .+....++|.+|+..|-+....+...+..... ...+-.++|.+...+.
T Consensus       216 l~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~-~~~~y~~l~al~~~~r  263 (429)
T 4b4t_R          216 IHCLAVRNFKEAAKLLVDSLATFTSIELTSYE-SIATYASVTGLFTLER  263 (429)
T ss_dssp             HGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHH-HHHHHHHHHHHHTTCH
T ss_pred             HHHHHhChHHHHHHHHHHHhccCCccchhhHH-HHHHHHHHHHHhcCCH
Confidence            55556789999999998876665443332111 1112234566655554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=88.52  E-value=6.4  Score=39.65  Aligned_cols=126  Identities=9%  Similarity=0.013  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNR-EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR  397 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~-~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~k  397 (535)
                      -++..|...+++.+|.+.+.+...   ..+ ...-.++..++.++.+.+ ++.|.+.+++..+...+.-..+.  ..+..
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d--~~l~~  179 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN--EMILN  179 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH--HHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch--HHHHH
Confidence            466777777778888887776522   111 123455666777777665 88888888776555331000001  12333


Q ss_pred             HHHH----HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        398 AARM----CVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       398 aAel----~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                      +++-    ....++|++|..+|++..+.+..   + ....+.+.   |++..|+...|...++.
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~---~-~~~~lLln---~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPT---W-KTQLGLLN---LHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS---H-HHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCC---c-ccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence            4433    33234999999999997665532   0 11111111   56677888889888875

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=87.80  E-value=6.1  Score=44.07  Aligned_cols=128  Identities=8%  Similarity=0.097  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHh--------CH----------HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISR--------NR----------EAASTVLEKGAKSLEEL-KSDAALTLYSRAAD  380 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~--------~~----------~~AA~~l~~AAk~~ek~-~~~eAie~y~kAae  380 (535)
                      ..++++++.+++.+|-+.|.++.+....        .|          ..-+..+...+++.... +.+.|-.+|.+|.+
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5778888888888888888888876421        11          12345677777776653 58889999999987


Q ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        381 VAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIGYHQESEHLL-AIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       381 ly~~egr~~~Aa~~l~kaAel~e~~~-~y~~Aie~ye~~~~~~~a~e~~~-~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      .....     ....+.+.|.|-...+ +++.|-.+|++..+.+.....+- ..+++     .  ...+|...|..+|++.
T Consensus       463 ~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f-----e--~~~~~~~~AR~lfera  530 (679)
T 4e6h_A          463 LKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF-----L--IYVNEESQVKSLFESS  530 (679)
T ss_dssp             TGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH-----H--HHHTCHHHHHHHHHHH
T ss_pred             hcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH-----H--HhCCCHHHHHHHHHHH
Confidence            62111     1345666776655554 59999999999988876543332 22222     2  2347888899999974


Q ss_pred             h
Q psy11025        459 G  459 (535)
Q Consensus       459 ~  459 (535)
                      -
T Consensus       531 l  531 (679)
T 4e6h_A          531 I  531 (679)
T ss_dssp             T
T ss_pred             H
Confidence            3

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=87.30  E-value=8  Score=43.09  Aligned_cols=132  Identities=9%  Similarity=-0.042  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhchHHHH-HHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC--------C-c-
Q psy11025        320 AALTLYSRAADVAHGE-DNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE--------D-N-  387 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa-~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e--------g-r-  387 (535)
                      .+|..+++-++..+|. +.|.+|...   +|. ....+...|.+.+.. ++++|-++|+++++.+...        . . 
T Consensus       348 ~ya~~~~~~~~~~~a~r~il~rAi~~---~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~  423 (679)
T 4e6h_A          348 NMANYQGEKNTDSTVITKYLKLGQQC---IPN-SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE  423 (679)
T ss_dssp             HHHHHHHHHSCCTTHHHHHHHHHHHH---CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence            5555555555556676 777777643   232 123455667777765 4899999999999875211        0 0 


Q ss_pred             ------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHhhh
Q psy11025        388 ------YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLA-RGDTVAAEKAFKEWGN  460 (535)
Q Consensus       388 ------~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~-~~D~vaA~~~~e~~~~  460 (535)
                            ...-.......+++..+.+..+.|-.+|+++.......     ..++++..+.+... .+|...|.++|+..-.
T Consensus       424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                  11234466677777777888999999998886541110     01222221122222 3445568888887433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=85.38  E-value=2.8  Score=41.72  Aligned_cols=65  Identities=12%  Similarity=-0.106  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11025        353 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG  420 (535)
Q Consensus       353 A~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~  420 (535)
                      +..+.-.+.+++..+ +++|+.+|++|..   +..-+....+..-..|-++...|+.++|...|++...
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            445556677777765 8999999998872   2211333556666777788888999999999998743

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.75  E-value=26  Score=36.38  Aligned_cols=99  Identities=12%  Similarity=-0.019  Sum_probs=77.3

Q ss_pred             HHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Q psy11025        358 KGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLA  435 (535)
Q Consensus       358 ~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~  435 (535)
                      +-+++|-+ .+..+|..++.+..+-....+....-.+++.--.+++-..+++.++-.+|.++...-.+. ......+.+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            44556655 458999999998888877766667888888888889999999999999999987666554 3355667777


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHH
Q psy11025        436 VALVLVQL-ARGDTVAAEKAFK  456 (535)
Q Consensus       436 la~il~~L-~~~D~vaA~~~~e  456 (535)
                      ...++.++ +.+|+..|-..|-
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~  205 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFY  205 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHH
Confidence            88889999 8999988766654

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=84.65  E-value=8.9  Score=31.55  Aligned_cols=61  Identities=16%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHG----EDNYKQAAEYISRAARMCVRVKEFDKAA  412 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~----egr~~~Aa~~l~kaAel~e~~~~y~~Ai  412 (535)
                      |.....+|.++=...+.++|+.+|..|+++|..    +.....-..+..++.+.+.+.+.....+
T Consensus        15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l   79 (93)
T 1wfd_A           15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYL   79 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555554455678888888888887643    2233444445556666666555444433

>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*

Probab=84.34  E-value=3.9  Score=43.06  Aligned_cols=104  Identities=13%  Similarity=0.215  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHH-HH-----------HHhC--CHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISR-------NREAASTVLEKGA-KS-----------LEEL--KSDAALTLYSRA  378 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~-------~~~~AA~~l~~AA-k~-----------~ek~--~~~eAie~y~kA  378 (535)
                      .=++...+.+||-|||-|+..+|.++.+       .+... ..+.... ++           +...  .-..-+++|.+|
T Consensus        16 ~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~-~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll~~a   94 (428)
T 2wm9_A           16 SMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGC-TAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQC   94 (428)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCG-GGGTTTCGGGGGGC---------CCSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCH-HHHhhcCCCccchhccccccCCCccccCHHHHHHHHHHH
Confidence            5677777888888999888876654321       00000 0000000 00           0000  123345678888


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        379 ADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       379 aely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      +++|...+....|..+++.++.+|+...+|.+-.+++...++.|..
T Consensus        95 i~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~  140 (428)
T 2wm9_A           95 ADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK  140 (428)
T ss_dssp             HHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888877888877777777766654

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=83.90  E-value=1.9  Score=45.67  Aligned_cols=50  Identities=10%  Similarity=0.115  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Q psy11025        374 LYSRAADVAHGEDNYKQAAEYISRAARMCVRV-KEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       374 ~y~kAaely~~egr~~~Aa~~l~kaAel~e~~-~~y~~Aie~ye~~~~~~~  423 (535)
                      +|.+|+++|...+....|..+++.++.+|+.. -+|.+-.+++...+.+|.
T Consensus        94 L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~  144 (436)
T 2yin_A           94 LYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYE  144 (436)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666665556666666666666666653 566665555555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=82.96  E-value=15  Score=40.11  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh---------hHHHHHHHHH------HHHHHHHHhcCCHHHHHHHHH
Q psy11025        392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES---------EHLLAIGRLA------VALVLVQLARGDTVAAEKAFK  456 (535)
Q Consensus       392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~---------e~~~~a~rl~------la~il~~L~~~D~vaA~~~~e  456 (535)
                      -...+++|+++++.++++.|+..|.+..++....         +...++++..      ..++.+.+..||...|.++|.
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI  760 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH
Confidence            3466788888888888888888888875543211         1122222211      112344555667777777776


Q ss_pred             H
Q psy11025        457 E  457 (535)
Q Consensus       457 ~  457 (535)
                      +
T Consensus       761 ~  761 (814)
T 3mkq_A          761 K  761 (814)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=80.37  E-value=14  Score=29.57  Aligned_cols=57  Identities=16%  Similarity=0.107  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHhhhH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHG----EDNYKQAAEYISRAARMCVRVKEF  408 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~----egr~~~Aa~~l~kaAel~e~~~~y  408 (535)
                      |.....+|.+.=...+.++|+.+|..|+++|..    +.....-..+..++.+.+.+.+..
T Consensus        13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~L   73 (85)
T 2v6x_A           13 GIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQL   73 (85)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444443444577777777777777543    222333334444555555544333

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=80.02  E-value=9.7  Score=32.78  Aligned_cols=28  Identities=25%  Similarity=0.220  Sum_probs=16.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAH  383 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~  383 (535)
                      +.+|..+=+..+.++|+.+|..|+++|.
T Consensus        22 v~~Ave~D~ag~y~eAl~lY~~Aie~l~   49 (117)
T 2cpt_A           22 ASKAAQEDKAGNYEEALQLYQHAVQYFL   49 (117)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            3344333334457777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.61
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.44
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.39
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.32
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.16
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.1
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.08
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.01
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.67
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.63
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.59
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.55
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.3
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.28
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.25
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.23
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.21
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.54
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	94.9
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.68
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.37
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	93.36
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	93.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	93.31
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	92.99
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	92.73
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	91.93
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	91.25
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	90.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	90.01
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.79
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	88.44
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	83.02
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	82.57
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	82.5

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=7.6e-18  Score=166.30  Aligned_cols=195  Identities=17%  Similarity=0.197  Sum_probs=151.5

Q ss_pred             CHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCC
Q psy11025        317 KPDAALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED  386 (535)
Q Consensus       317 K~D~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~eg  386 (535)
                      |+++|+++|.+||+       |.+|.++|.+|++++.+  ++..++.+|..+|.+|.+.. +++|+++|.+|++++...|
T Consensus        32 ~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~  111 (290)
T d1qqea_          32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG  111 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence            45799999999998       78999999999999976  56779999999999998865 9999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q psy11025        387 NYKQAAEYISRAARMCVR-VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP  465 (535)
Q Consensus       387 r~~~Aa~~l~kaAel~e~-~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~  465 (535)
                      .+..++.++..+|++++. .++|++|+++|+++.+++...+....++.+..-++.+....|+...|...|++........
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            999999999999999976 5999999999999999887765555455444444556667788888999999866532210


Q ss_pred             CccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---h-cCCCCchhhhcc
Q psy11025        466 ERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---W-GNCCEAPEINSH  533 (535)
Q Consensus       466 ~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~---~-~~F~~s~E~~~~  533 (535)
                      .              .       ..+. ....++.+|+|+|+.||.+.|.+++++   + |+|.++||+..+
T Consensus       192 ~--------------~-------~~~~-~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l  241 (290)
T d1qqea_         192 R--------------L-------SQWS-LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFL  241 (290)
T ss_dssp             T--------------T-------TGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHH
T ss_pred             h--------------h-------hhhh-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHH
Confidence            0              0       1122 233358889999999999999999998   2 999999998654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=6.8e-12  Score=122.92  Aligned_cols=154  Identities=18%  Similarity=0.171  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Q psy11025        331 VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEE--LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK  406 (535)
Q Consensus       331 ~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek--~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~  406 (535)
                      +.+|..+|.+|..++.+  ....++.++...+++|+.  .++++|+++|.+|++++...+.+..++.++.++|.++...|
T Consensus        93 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g  172 (290)
T d1qqea_          93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG  172 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC
Confidence            34444444444444433  233456666666666654  45999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchh
Q psy11025        407 EFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYH  485 (535)
Q Consensus       407 ~y~~Aie~ye~~~~~~~a~e-~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~  485 (535)
                      +|++|+++|+++........ ....+....+..++|++..+|...|.+.|+++..  .++.|..+|++.++.+| +.+|.
T Consensus       173 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l-~~a~~  249 (290)
T d1qqea_         173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSL-IDAVN  249 (290)
T ss_dssp             CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHH-HHHHH
T ss_pred             hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCccchHHHHHHHHH-HHHHH
Confidence            99999999999987765432 1223333445566889999999999999998654  46778999999988887 77665


Q ss_pred             hh
Q psy11025        486 QE  487 (535)
Q Consensus       486 ~~  487 (535)
                      .+
T Consensus       250 ~~  251 (290)
T d1qqea_         250 EG  251 (290)
T ss_dssp             TT
T ss_pred             hc
Confidence            54

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00046  Score=58.11  Aligned_cols=99  Identities=17%  Similarity=0.224  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGE-DNYKQAAEYISR  397 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~e-gr~~~Aa~~l~k  397 (535)
                      +-+..|-+.++|.+|..+|.+|.+..-.+    +.+|..-|.+|... ++++|+++|.+|+++-... +-...-+.++..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            44566777788999999999998874333    23677777777765 5999999999999996554 335567799999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      .|.++...++|++|+++|++.....
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999886543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0015  Score=61.61  Aligned_cols=88  Identities=9%  Similarity=0.031  Sum_probs=57.2

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +..|.+.|++.+|..+|.+|....-++    +.++..-|.++...+ +++|+.+|.+|+++....      ...+...|.
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~   95 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDN------QTALMALAV   95 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc------ccccccccc
Confidence            344456688999999999887543222    335666677777654 888999999988763322      234555566


Q ss_pred             HHHHhhhHHHHHHHHHHHH
Q psy11025        401 MCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~  419 (535)
                      ++...+++++|++.|++..
T Consensus        96 ~~~~~~~~~~A~~~~~~~~  114 (323)
T d1fcha_          96 SFTNESLQRQACEILRDWL  114 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhHH
Confidence            6666666666666666543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.57  E-value=0.00053  Score=59.51  Aligned_cols=101  Identities=15%  Similarity=0.010  Sum_probs=79.8

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHhCH--------HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCc-----HH
Q psy11025        324 LYSRAADVAHGEDNYKQAAEYISRNR--------EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-----YK  389 (535)
Q Consensus       324 lYekAA~~~eAa~af~kAA~~y~~~~--------~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr-----~~  389 (535)
                      .+-+.|++.+|...|.+|.++..+.+        ..-+.+|..-+.+|.+.+ +++|++.|.+|..++...+.     ..
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            34445678999999999999886533        235678888899988865 99999999999999864322     22


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025        390 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE  424 (535)
Q Consensus       390 ~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a  424 (535)
                      .-...+...|.++...|+|++|++.|+++.+++..
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            34456788899999999999999999999887654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.0039  Score=56.67  Aligned_cols=91  Identities=13%  Similarity=-0.025  Sum_probs=70.4

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +.+|.+-|.+.+|..+|.+|....-++    +.+|..-|.++... ++++|+.+|++|.++--...      ..+...|.
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~  113 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN------YAHLNRGI  113 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh------hhHHHHHH
Confidence            456667777899999999987764333    23566677777776 59999999999999854432      35677888


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHH
Q psy11025        401 MCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      ++...|++++|++.|++..+..
T Consensus       114 ~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_         114 ALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHHHHHHHHHHhhc
Confidence            9999999999999999987654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0013  Score=62.20  Aligned_cols=153  Identities=17%  Similarity=0.125  Sum_probs=98.3

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR  400 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe  400 (535)
                      +.+|...+++.+|...|.++.......    +..+...+.++.+. ++++|+++|++|+++....      ...+...|.
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~  279 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSLSPNH----AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLAN  279 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHhHHHhhhH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence            444444555566666666655432222    23445556666554 4899999999998875433      345677888


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccc
Q psy11025        401 MCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSL  479 (535)
Q Consensus       401 l~e~~~~y~~Aie~ye~~~~~~~a~e-~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L  479 (535)
                      ++...+++.+|++.|+.......... ....       .+.+....|+...|...|++.-..  +|.             
T Consensus       280 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~al~~--~p~-------------  337 (388)
T d1w3ba_         280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNN-------LANIKREQGNIEEAVRLYRKALEV--FPE-------------  337 (388)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHTTTCHHHHHHHHHHHTTS--CTT-------------
T ss_pred             HHHHcCCHHHHHHHHHhhhccCCccchhhhH-------HHHHHHHCCCHHHHHHHHHHHHHh--CCC-------------
Confidence            89999999999999988765443221 1111       224556678888899999873221  111             


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        480 GKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       480 ~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                                    .....+..+.|+...|+.-.|...|++
T Consensus       338 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         338 --------------FAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             --------------CHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             --------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                          012235668899999999999999987

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.0048  Score=57.04  Aligned_cols=139  Identities=12%  Similarity=-0.003  Sum_probs=101.7

Q ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        322 LTLYSRAADVAHGEDNYKQAAEYISRNRE-AASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       322 A~lYekAA~~~eAa~af~kAA~~y~~~~~-~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      |.++...|++.+|...|.+|......++. .-+.++..-+.++... ++++|+.+|++|.++....+........+...+
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            67777888899999999999776544322 2344566667777664 599999999999999998888888888999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQESE--HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~e--~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .++...+++..|.+.|.+.........  .....+........+....++...|...|+....
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~  161 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE  161 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            999999999999999999877664421  1111122222223455567888778888876433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.0027  Score=58.82  Aligned_cols=175  Identities=13%  Similarity=0.063  Sum_probs=117.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRN-REAASTVLEKGAKSLE-ELKSDAALTLYSRAADVAHGEDN-YKQAAEYISR  397 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~-~~~AA~~l~~AAk~~e-k~~~~eAie~y~kAaely~~egr-~~~Aa~~l~k  397 (535)
                      -+.+|...+++.++...|.++....... ....+.++...+.++. ..+..++...+.+|..++...+. ......++..
T Consensus       139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~  218 (366)
T d1hz4a_         139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV  218 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence            4567777788889999998888776542 2222333444444444 45689999999999999877754 5667778888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccc
Q psy11025        398 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSF  477 (535)
Q Consensus       398 aAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~  477 (535)
                      .+.++...+++++|.+.|++..+...............+  ..+++..|+...|...|++.-.                 
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~-----------------  279 (366)
T d1hz4a_         219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI--ARAQILLGEFEPAEIVLEELNE-----------------  279 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH--HHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence            899999999999999999987654332222111111112  2445667888779888886221                 


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025        478 SLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  520 (535)
Q Consensus       478 ~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~  520 (535)
                            ...............+..+.+++..||.-.|...+++
T Consensus       280 ------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         280 ------NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             ------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ------HHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                  1112222334445557778999999999999998876

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0026  Score=59.96  Aligned_cols=121  Identities=19%  Similarity=0.169  Sum_probs=82.6

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|.+.+++.+|...|.+|.+...++.    .++...+.++... +.++|+++|.++.......      ...+...+
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~  312 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIELQPHFP----DAYCNLANALKEKGSVAEAEDCYNTALRLCPTH------ADSLNNLA  312 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCH----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc------chhhhHHH
Confidence            45566666667777777777765533332    2455666677654 5999999999998876544      34566778


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      .++...|+|++|++.|+++.+..-.. ..+..       .+.+....|+...|...|++.
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~a  365 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSN-------LASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH-------HHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHH
Confidence            88999999999999999987654321 11222       224455667777799999874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0048  Score=51.46  Aligned_cols=101  Identities=18%  Similarity=0.228  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      |.......-.++...++++|+++|.+|+++....      ..++...|.++.+.++|++|++.|+++.++.... ..+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            3333444445566677999999999999985433      3578888999999999999999999998765442 33455


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                      .++++..++.+....++...|+..|++.
T Consensus        78 ~a~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          78 IAKAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5566666667777788888899999873

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.0011  Score=58.32  Aligned_cols=93  Identities=10%  Similarity=0.045  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      +-+..|-+.|++.+|...|.+|..+.-++    +.+|...|.+|.+.+ +++|+.+|.+|+++.-..      .+.+...
T Consensus         9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~----~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~------~~a~~~l   78 (201)
T d2c2la1           9 EQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKAHFFL   78 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc------HHHHHHH
Confidence            44667777888999999999998774333    346777888888765 999999999998774332      3457889


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      |.++...|+|++|+..|+++..+.
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999987654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0018  Score=53.41  Aligned_cols=88  Identities=10%  Similarity=0.095  Sum_probs=52.1

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q psy11025        325 YSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCV  403 (535)
Q Consensus       325 YekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e  403 (535)
                      |.+.+++.+|..+|.+|...   +|..+ .+|..-|.++.+. ++++|+..|.+|+++....      ...+...|.++.
T Consensus        13 ~~~~g~~~eAi~~~~~al~~---~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~g~~~~   82 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKL---DPHNH-VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------GKGYSRKAAALE   82 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---CTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhc---CCcch-hhhhcccccccccccccccchhhhhHHHhccch------hhHHHHHHHHHH
Confidence            33445566677777666543   22222 2455555555543 4777777777777765443      135566677777


Q ss_pred             HhhhHHHHHHHHHHHHHHH
Q psy11025        404 RVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       404 ~~~~y~~Aie~ye~~~~~~  422 (535)
                      ..++|++|+..|+++.+..
T Consensus        83 ~~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTC
T ss_pred             HccCHHHHHHHHHHHHHhC
Confidence            7777777777777765443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.05  E-value=0.0034  Score=51.28  Aligned_cols=89  Identities=9%  Similarity=-0.011  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      ..+..|.+.|++.+|..+|.+|....-++    +.++..-|.++...+ +++|+.+|++|+++--..      ...+...
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~l   90 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAAL   90 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccccccc----chhhhhhhhhhhhhhhHHHhhccccccccccccc------ccchHHH
Confidence            56777888899999999999998764333    456788888888765 999999999999985443      3577889


Q ss_pred             HHHHHHhhhHHHHHHHHHHH
Q psy11025        399 ARMCVRVKEFDKAADLIRQE  418 (535)
Q Consensus       399 Ael~e~~~~y~~Aie~ye~~  418 (535)
                      |.++...|++++|++.+++.
T Consensus        91 a~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          91 AVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999875

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.01  E-value=0.013  Score=50.28  Aligned_cols=103  Identities=17%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh---
Q psy11025        355 VLEKGAKSLEELKSDAALTLYSRAADVAHGEDN------YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES---  425 (535)
Q Consensus       355 ~l~~AAk~~ek~~~~eAie~y~kAaely~~egr------~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~---  425 (535)
                      .+.++-..+...++++|++.|.+|+++....+.      ...-+.++..+|..+...|+|++|++.|+++.+++...   
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            344455555667799999999999999876542      23456788999999999999999999999998877532   


Q ss_pred             --hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        426 --EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       426 --e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                        +........+.-.+.++...|+...|...|++
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~  125 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  125 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence              11111122222234556667777779888887

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0047  Score=53.13  Aligned_cols=86  Identities=17%  Similarity=0.093  Sum_probs=65.0

Q ss_pred             HHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q psy11025        327 RAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV  405 (535)
Q Consensus       327 kAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~  405 (535)
                      +.+++.+|..+|.+|..+.-.+    +.+|..-|.++...+ +++|+++|++|+++--..      .+.+...|.++...
T Consensus        22 ~~~~y~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~------~~a~~~~g~~~~~~   91 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKGYYRRAASNMAL   91 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHhhhccccchhh----hhhhhhhHHHHHhccccchHHHHHHHHHHHcccc------hHHHHHHHHHHHHc
Confidence            3345788889998888765333    235666677777654 999999999999885443      24577888889999


Q ss_pred             hhHHHHHHHHHHHHHHH
Q psy11025        406 KEFDKAADLIRQEIGYH  422 (535)
Q Consensus       406 ~~y~~Aie~ye~~~~~~  422 (535)
                      |+|++|++.|++...+.
T Consensus        92 g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          92 GKFRAALRDYETVVKVK  108 (159)
T ss_dssp             TCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            99999999999987664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.015  Score=47.57  Aligned_cols=94  Identities=17%  Similarity=0.118  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHH
Q psy11025        354 TVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIG  432 (535)
Q Consensus       354 ~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~  432 (535)
                      ..+.++=.++...++++|+.+|.+|+++....      ..++...|.++...++|++|++.|+++.+..... ..+...|
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g   78 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA   78 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc------hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHH
Confidence            34555566777778999999999999885544      3578888999999999999999999998765432 2233333


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        433 RLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       433 rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                             .|.+..|+...|+..|++.-.
T Consensus        79 -------~~~~~~~~~~~A~~~~~~a~~   99 (117)
T d1elwa_          79 -------AALEFLNRFEEAKRTYEEGLK   99 (117)
T ss_dssp             -------HHHHHTTCHHHHHHHHHHHHT
T ss_pred             -------HHHHHccCHHHHHHHHHHHHH
Confidence                   455666788889999998544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.70  E-value=0.013  Score=50.19  Aligned_cols=100  Identities=14%  Similarity=0.150  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        354 TVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN----------YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       354 ~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr----------~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      ...+++-.+|++.++.+|+.+|.+|++++.....          ......++...|..+.+.++|.+|++.|+++.+.--
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p   98 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK   98 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence            3444555666666677777777777766533321          112234666777777777888888888887754432


Q ss_pred             Hh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        424 ES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       424 a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .. ..+...       +.|+...|+...|...|++.-.
T Consensus        99 ~~~ka~~~~-------g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          99 NNVKALYKL-------GVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             TCHHHHHHH-------HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhhHHh-------HHHHHHcCCHHHHHHHHHHHHH
Confidence            11 112222       2445555677778777776444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.004  Score=55.85  Aligned_cols=98  Identities=10%  Similarity=0.051  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-------
Q psy11025        354 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-------  425 (535)
Q Consensus       354 ~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-------  425 (535)
                      ..+..-|.++...+ .++|+++|.+|+++-...      +..+...|.++...++|++|++.|+++.......       
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            45667788887764 999999999999875333      4466778888999999999999999987542110       


Q ss_pred             ---hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        426 ---EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       426 ---e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~  457 (535)
                         ......+....-..+++...++...|...|++
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               00000111112223556667888778888875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.014  Score=51.07  Aligned_cols=46  Identities=17%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11025        368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~  419 (535)
                      +++|+.++.+|+.+--..      ..++...|.++...|+|++|+..|+++.
T Consensus        78 ~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          78 FSAAIESCNKALELDSNN------EKGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccc------hhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444444444444442211      2334444444444444444444444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0065  Score=57.07  Aligned_cols=92  Identities=14%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      -+.+|...+++.+|.+.|.++.....++    +.++...|.++...+ .++|+++|++|+++....      .+.+...|
T Consensus       178 l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg  247 (323)
T d1fcha_         178 LGVLFNLSGEYDKAVDCFTAALSVRPND----YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY------IRSRYNLG  247 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhccccccccccccc----ccchhhhhhcccccccchhHHHHHHHHHHHhhcc------HHHHHHHH
Confidence            3455556666666666666665443222    234555566665543 777777777777653222      23455667


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      .++...|+|++|++.|+++.++.
T Consensus       248 ~~~~~~g~~~~A~~~~~~al~l~  270 (323)
T d1fcha_         248 ISCINLGAHREAVEHFLEALNMQ  270 (323)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC
Confidence            77777777777777777766543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.013  Score=50.20  Aligned_cols=95  Identities=14%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHH
Q psy11025        353 STVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAI  431 (535)
Q Consensus       353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a  431 (535)
                      -....++-.++...++++|+.+|++|+++.-..      ..++...|.++...|++++|++.|+++.++.-.. ..+...
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhh------hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH
Confidence            344555666777788999999999999986544      5677889999999999999999999997664322 223332


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        432 GRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       432 ~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      |       .|+...|+...|..+|++...
T Consensus        85 g-------~~~~~~g~~~eA~~~~~~a~~  106 (159)
T d1a17a_          85 A-------ASNMALGKFRAALRDYETVVK  106 (159)
T ss_dssp             H-------HHHHHTTCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHcCCHHHHHHHHHHHHH
Confidence            2       455667888889999987443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.59  E-value=0.0083  Score=48.80  Aligned_cols=90  Identities=12%  Similarity=0.078  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Q psy11025        356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRL  434 (535)
Q Consensus       356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl  434 (535)
                      |..+-.++...++++|+.+|++|+......      ...+...|.++...+++++|+..|+++.+..-.. +.+.     
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~-----   88 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA-----   88 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccccccc------chhhhhhhhhhhhhhhHHHhhcccccccccccccccchH-----
Confidence            444444455567999999999999986543      5788889999999999999999999987665332 2222     


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                        ..++++...|+...|.++|++|
T Consensus        89 --~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          89 --ALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHCCCHHHHHHHHHHH
Confidence              2235666778888899999874

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.011  Score=51.56  Aligned_cols=65  Identities=15%  Similarity=0.123  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q psy11025        393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA  464 (535)
Q Consensus       393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~  464 (535)
                      .++..+|.++.+.++|++|+..++++.++--. ...+...|       .|+...|+...|...|++.-..-++
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g-------~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG-------EAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHH-------HHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            35667788888899999999999999988743 34444444       3455667777799999997665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0037  Score=49.65  Aligned_cols=70  Identities=13%  Similarity=0.056  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr-~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~  421 (535)
                      |-.||.-+-.+++..+..+|+..|++|.++....+. ...-++++...|..+.+.|+|++|++.|+++.++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            345677777777888899999999999999866532 2234688999999999999999999999998655

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.015  Score=50.57  Aligned_cols=90  Identities=17%  Similarity=0.102  Sum_probs=64.4

Q ss_pred             HHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHH
Q psy11025        356 LEKGAKSL-EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGR  433 (535)
Q Consensus       356 l~~AAk~~-ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~r  433 (535)
                      |.+-++.| ++.++++|+.+|.+|+++--..      ..++...|.+|.+.++|++|++.|+++.++.-. ...+..   
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~---   77 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF---   77 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH---
Confidence            44444444 5567999999999999985433      467888899999999999999999998755322 111222   


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025        434 LAVALVLVQLARGDTVAAEKAFKEW  458 (535)
Q Consensus       434 l~la~il~~L~~~D~vaA~~~~e~~  458 (535)
                        +  +.|++..|+...|...|++.
T Consensus        78 --l--g~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          78 --L--GQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             --H--HHHHHHTTCHHHHHHHHHHH
T ss_pred             --H--HHHHHHCCCHHHHHHHHHHH
Confidence              2  24555667877799998873

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.29  E-value=0.059  Score=46.48  Aligned_cols=60  Identities=13%  Similarity=0.151  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11025        354 TVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       354 ~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~  419 (535)
                      .+|...|.||.+.+ +++|+.+|.+|+.+-...      .+.+-..|.++...|+|++|++.|+++.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~------~~a~~~~~~~~~~l~~~~~A~~~~~~al  125 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVL  125 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccch------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33444444444433 555555555555442211      2344444555555555555555555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.28  E-value=0.023  Score=49.05  Aligned_cols=94  Identities=12%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHh------------CHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHH
Q psy11025        323 TLYSRAADVAHGEDNYKQAAEYISR------------NREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYK  389 (535)
Q Consensus       323 ~lYekAA~~~eAa~af~kAA~~y~~------------~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~  389 (535)
                      ..|-+.+++.+|.++|.+|......            ....-+.+|..-|.++.+. ++++|+..|.+|+++-...    
T Consensus        35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~----  110 (169)
T d1ihga1          35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----  110 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh----
Confidence            3333445577888888888765422            1122455666667777776 4999999999998874322    


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        390 QAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       390 ~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                        ...+...|.++...++|++|++.|+++.++-
T Consensus       111 --~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1         111 --TKALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             --hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence              3567889999999999999999999987664

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.25  E-value=0.022  Score=49.46  Aligned_cols=66  Identities=17%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q psy11025        392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA  464 (535)
Q Consensus       392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~  464 (535)
                      ..++...|..+...++|.+|++.|+++.++--.. ..+...+       .|+...|+...|...|++.-...++
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~-------~~~~~l~~~~~A~~~~~~al~l~P~  130 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG-------EAQLLMNEFESAKGDFEKVLEVNPQ  130 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3456678888888999999999999999886543 3344444       3455667788899999997766654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.089  Score=46.54  Aligned_cols=140  Identities=13%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA  430 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~  430 (535)
                      |-..+.++...+++.+++.|+++|.++     ....    ++.+-..|.++...|+|++|++.|+++.++-... ..+..
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i-----~~~~----~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~   75 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV-----QDPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ   75 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS-----SSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc-----CCCC----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH
Confidence            455667777777778899999888753     2222    2356688999999999999999999997654221 22333


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCC
Q psy11025        431 IGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGD  510 (535)
Q Consensus       431 a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD  510 (535)
                      .       ++|+...|+...|...|++--.+........  ...    + -..+.     ... ....+..++|+...|+
T Consensus        76 ~-------g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~--~~~----~-~~~~~-----~~~-~e~~~n~a~~~~~~~~  135 (192)
T d1hh8a_          76 R-------GMLYYQTEKYDLAIKDLKEALIQLRGNQLID--YKI----L-GLQFK-----LFA-CEVLYNIAFMYAKKEE  135 (192)
T ss_dssp             H-------HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE--CGG----G-TBCCE-----EEH-HHHHHHHHHHHHHTTC
T ss_pred             H-------HHHHHhhccHHHHHHHHHHHHHhCccCchHH--HHH----h-hhhcc-----cch-HHHHHHHHHHHHHCCC
Confidence            3       2566677888889888887333221111100  000    0 00000     000 1233567889999999


Q ss_pred             HHHHHHHHHH
Q psy11025        511 TVAAEKAFKE  520 (535)
Q Consensus       511 ~V~A~~a~~~  520 (535)
                      +-.|...++.
T Consensus       136 ~~~A~~~l~~  145 (192)
T d1hh8a_         136 WKKAEEQLAL  145 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.21  E-value=0.023  Score=48.56  Aligned_cols=88  Identities=9%  Similarity=0.114  Sum_probs=67.7

Q ss_pred             hchHHHHHHHHHHHHHHHhCH------------HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q psy11025        329 ADVAHGEDNYKQAAEYISRNR------------EAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYI  395 (535)
Q Consensus       329 A~~~eAa~af~kAA~~y~~~~------------~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l  395 (535)
                      +++.+|..+|.+|..++...+            .....+|..-|.||-+.+ +++|+++|.+|+++-...      .+++
T Consensus        31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~------~ka~  104 (153)
T d2fbna1          31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN------VKAL  104 (153)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHH
T ss_pred             CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh------hhhh
Confidence            447899999999988764311            113456666677777654 999999999999874333      3688


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        396 SRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       396 ~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      -..|.++...|+|++|+..|+++.++.
T Consensus       105 ~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1         105 YKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            899999999999999999999987664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.08  Score=47.41  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        349 REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       349 ~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      +..-+..|..-+.+|...+ +++|++.|++|+.+-...      ...+...|.++...|+|++|++.|+++.+..
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  101 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD  101 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHhhhchHHHHHHHHHHhhhhhhHHHHHH
Confidence            3344566666678887764 999999999999985443      3567788999999999999999999987653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.90  E-value=0.11  Score=44.38  Aligned_cols=88  Identities=10%  Similarity=0.061  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHH
Q psy11025        366 LKSDAALTLYSRAADVAHGED----------NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRL  434 (535)
Q Consensus       366 ~~~~eAie~y~kAaely~~eg----------r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl  434 (535)
                      .++++|+++|.+|+.++....          --..-+.++...|.++.+.++|++|+..|.++.++-... ..+...   
T Consensus        41 ~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~---  117 (169)
T d1ihga1          41 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRR---  117 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhH---
Confidence            345555555555555432110          012345667778889999999999999999986543221 122222   


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        435 AVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       435 ~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                          +.++...|+...|...|++...
T Consensus       118 ----g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         118 ----AQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             ----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHccCHHHHHHHHHHHHH
Confidence                3445566777779999987444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.68  E-value=0.16  Score=41.96  Aligned_cols=88  Identities=15%  Similarity=0.078  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhc-----------------hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHH
Q psy11025        319 DAALTLYSRAAD-----------------VAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-----LKSDAALTLYS  376 (535)
Q Consensus       319 D~AA~lYekAA~-----------------~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-----~~~~eAie~y~  376 (535)
                      +.|..+|++|+.                 ..+|...|.+|++.  .++    .+....+.+|..     .|+++|+++|+
T Consensus        10 ~~A~~~~~kaa~~g~~~a~~~l~~~~~~~~~~a~~~~~~aa~~--g~~----~a~~~Lg~~y~~g~~~~~d~~~A~~~~~   83 (133)
T d1klxa_          10 KKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACEL--NSG----NGCRFLGDFYENGKYVKKDLRKAAQYYS   83 (133)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChhhhhhhccccccCHHHHHHHHhhhhcc--cch----hhhhhHHHhhhhccccchhhHHHHHHHh
Confidence            488899998875                 24555666665542  122    123444566653     45788888888


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHH
Q psy11025        377 RAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIG  420 (535)
Q Consensus       377 kAaely~~egr~~~Aa~~l~kaAel~e~----~~~y~~Aie~ye~~~~  420 (535)
                      +|++.    |.+    ..+..++.+|..    ..++.+|+++|+++++
T Consensus        84 ~aa~~----g~~----~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          84 KACGL----NDQ----DGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHT----TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             hhhcc----Ccc----hHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            88765    211    234456777776    3578888888888754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.2  Score=41.15  Aligned_cols=90  Identities=16%  Similarity=0.109  Sum_probs=57.5

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025        324 LYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL----KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA  399 (535)
Q Consensus       324 lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~----~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA  399 (535)
                      .+....++.+|.+.|.+|...--.+    ..++..-|.++-+.    +.++|+.+|++++..   . ....-.+++-.+|
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~----~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~---~-~~~~~~~~~~~Lg   79 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVS----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---G-SKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---S-CHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc---c-CCchHHHHHHHHH
Confidence            3444455677777777766542222    23566667776542    245688888876542   2 1233356777888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHH
Q psy11025        400 RMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       400 el~e~~~~y~~Aie~ye~~~~~  421 (535)
                      ..+.+.|+|++|+++|+++.+.
T Consensus        80 ~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          80 VGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHh
Confidence            8888889999999999887544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.36  E-value=0.49  Score=39.55  Aligned_cols=99  Identities=12%  Similarity=0.083  Sum_probs=54.5

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH----------h-CCHHHHHHHHHHHHHHHhcCC-cHHHH
Q psy11025        324 LYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLE----------E-LKSDAALTLYSRAADVAHGED-NYKQA  391 (535)
Q Consensus       324 lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~e----------k-~~~~eAie~y~kAaely~~eg-r~~~A  391 (535)
                      .|++.+.+.+|.++|++|....-++.+    +|..-+.++-          . ...++|+.+|++|+++--... -.-.-
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~----~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDAD----NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            467777788888888887665433322    2333333331          1 126789999999998732221 11112


Q ss_pred             HHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHhh
Q psy11025        392 AEYISRAARM----CVRVKEFDKAADLIRQEIGYHQESE  426 (535)
Q Consensus       392 a~~l~kaAel----~e~~~~y~~Aie~ye~~~~~~~a~e  426 (535)
                      +.++...+++    ....+.|++|++.|+++.+.--...
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH
Confidence            2233333322    1223567888888888876654433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.33  E-value=0.2  Score=43.98  Aligned_cols=93  Identities=10%  Similarity=-0.069  Sum_probs=62.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHHhcCC-------c---------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025        360 AKSLEELKSDAALTLYSRAADVAHGED-------N---------YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ  423 (535)
Q Consensus       360 Ak~~ek~~~~eAie~y~kAaely~~eg-------r---------~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~  423 (535)
                      .......++++|+++|.+|..+|.+.-       .         -..-.+++.+.++.+...|+|++|+..+++.....-
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P   98 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP   98 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence            344455568888888888888765331       0         022335677788888889999999999999876654


Q ss_pred             HhhH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        424 ESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       424 a~e~-~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      ..+. +...+       .+....|+...|...|+++.
T Consensus        99 ~~e~~~~~l~-------~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          99 YREPLWTQLI-------TAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             TCHHHHHHHH-------HHHHTTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHH-------HHHHHhcCHHHHHHHHHHHH
Confidence            3332 22222       34556788888999998743

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.74  Score=42.73  Aligned_cols=91  Identities=11%  Similarity=0.086  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-HHHHHHH
Q psy11025        356 LEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGR  433 (535)
Q Consensus       356 l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e-~~~~a~r  433 (535)
                      +..-+.+++.. +.+.|..+|.++.......     ....+...+.+..+.+.+++|.++|+++........ .+...+ 
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~-----~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a-  175 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA-  175 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH-
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH-
Confidence            34445555544 3777777777776532221     223455666677777888888888888755443221 121111 


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025        434 LAVALVLVQLARGDTVAAEKAFKE  457 (535)
Q Consensus       434 l~la~il~~L~~~D~vaA~~~~e~  457 (535)
                           .+-+-..++...|..+|+.
T Consensus       176 -----~~e~~~~~~~~~a~~i~e~  194 (308)
T d2onda1         176 -----LMEYYCSKDKSVAFKIFEL  194 (308)
T ss_dssp             -----HHHHHTSCCHHHHHHHHHH
T ss_pred             -----HHHHHhccCHHHHHHHHHH
Confidence                 1122235677777778775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.99  E-value=0.21  Score=43.90  Aligned_cols=94  Identities=7%  Similarity=-0.083  Sum_probs=68.7

Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHhC------------------HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHh
Q psy11025        323 TLYSRAADVAHGEDNYKQAAEYISRN------------------REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAH  383 (535)
Q Consensus       323 ~lYekAA~~~eAa~af~kAA~~y~~~------------------~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~  383 (535)
                      ......|++.+|..+|.+|..+|...                  ...-..++...+.++... ++++|+.++++++.+.-
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P   98 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP   98 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence            33344456888999999998887431                  011345666667777665 49999999999999876


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025        384 GEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH  422 (535)
Q Consensus       384 ~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~  422 (535)
                      ..+      ..+...+..+...|++.+|+..|++..+.+
T Consensus        99 ~~e------~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          99 YRE------PLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             TCH------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             ccH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            553      366677788888999999999999986654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.43  Score=45.08  Aligned_cols=113  Identities=7%  Similarity=0.007  Sum_probs=69.3

Q ss_pred             chHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025        330 DVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL--KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE  407 (535)
Q Consensus       330 ~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~--~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~  407 (535)
                      .+.+|..+|.+|...   +|..+. ++..=+.++...  +.++|+++|.+|+++-...      ...+...|.++...|+
T Consensus        58 ~~~~Al~~~~~ai~l---nP~~~~-a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~------~~a~~~~~~~~~~l~~  127 (315)
T d2h6fa1          58 RSERAFKLTRDAIEL---NAANYT-VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHRRVLVEWLRD  127 (315)
T ss_dssp             CCHHHHHHHHHHHHH---CTTCHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHH---CCCChH-HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh------hhHHHHHhHHHHhhcc
Confidence            367788888887764   444322 233335555543  4789999999998875443      3455666777888888


Q ss_pred             HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025        408 FDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG  459 (535)
Q Consensus       408 y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~  459 (535)
                      |++|++.|.++.+..-. ...+...+.+     +.++..++.  |...|++.-
T Consensus       128 ~~eAl~~~~kal~~dp~n~~a~~~~~~~-----~~~~~~~~~--Al~~~~~al  173 (315)
T d2h6fa1         128 PSQELEFIADILNQDAKNYHAWQHRQWV-----IQEFKLWDN--ELQYVDQLL  173 (315)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHHH-----HHHHTCCTT--HHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhcchHHHHHHHHH-----HHHHHhhHH--HHHHHHHHH
Confidence            88888888888765322 1223333322     345555554  666666643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.93  E-value=1  Score=41.72  Aligned_cols=125  Identities=12%  Similarity=-0.012  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025        320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA  398 (535)
Q Consensus       320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka  398 (535)
                      ..+.++++-+++.+|...|.++...   .+......+..-++++... +.+.|.++|.+|........      ..+...
T Consensus       104 ~ya~~~~~~~~~~~a~~i~~~~l~~---~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~------~~~~~~  174 (308)
T d2onda1         104 AYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH------HVYVTA  174 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT------HHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence            3455556666666676667665432   2222233455556666553 58899999999987665543      345555


Q ss_pred             HHHHHH-hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025        399 ARMCVR-VKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       399 Ael~e~-~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~  460 (535)
                      |.+.-. .++++.|..+|++..+.+... +.....+       -.....||...|..+|++.-.
T Consensus       175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~-------~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI-------DYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH-------HHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHH-------HHHHHcCChHHHHHHHHHHHH
Confidence            654433 478999999999988765433 2233333       334467899889999998444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.44  Score=38.94  Aligned_cols=102  Identities=12%  Similarity=-0.033  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhccCCCCcccccc
Q psy11025        395 ISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLA-RGDTVAAEKAFKEWGNCCEAPERCESGS  472 (535)
Q Consensus       395 l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~-~~D~vaA~~~~e~~~~~~~~~~f~~sre  472 (535)
                      +..++.-+...++|++|.+.|+++...--. .+...+.+.+     +++.. .+|...|+.+|++.-.            
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~-----L~~s~~~~d~~~Ai~~l~~~l~------------   64 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWC-----LVRTRYNDDIRKGIVLLEELLP------------   64 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-----HTTSSSHHHHHHHHHHHHHHTT------------
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH-----HHHhcchHHHHHHHHHHHHHHh------------
Confidence            345566666778999999999988665432 2344444422     22211 2344447777775211            


Q ss_pred             ccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---h-cCCCCch
Q psy11025        473 SSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---W-GNCCEAP  528 (535)
Q Consensus       473 ~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~---~-~~F~~s~  528 (535)
                                 .+    ..+.....++..|+|+...||.-.|.+.|++   + |++....
T Consensus        65 -----------~~----~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~  109 (122)
T d1nzna_          65 -----------KG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  109 (122)
T ss_dssp             -----------TS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             -----------cc----CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence                       00    0111112235678999999999999999988   3 7775443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.33  Score=45.94  Aligned_cols=61  Identities=11%  Similarity=0.063  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY  421 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~  421 (535)
                      ++..-+.++... ++++|+++|.+|+++....      ..++...|.++...++|++|++.|+++.+.
T Consensus       114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         114 VWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            455556666654 4889999999999875443      245566677777788888888888887654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=0.41  Score=36.99  Aligned_cols=61  Identities=20%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             HHHHhchHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcC
Q psy11025        325 YSRAADVAHGEDNYKQAAEYISRN---REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE  385 (535)
Q Consensus       325 YekAA~~~eAa~af~kAA~~y~~~---~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~e  385 (535)
                      |-+-+++.+|...|++|.......   ...-+.+|..-+.++.+.+ +++|+.+|++|.++--..
T Consensus        15 ~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_          15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence            334456889999999998877542   2235678888898888764 999999999999885433

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.79  E-value=1.3  Score=34.58  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHhhhHH
Q psy11025        352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHG----EDNYKQAAEYISRAARMCVRVKEFD  409 (535)
Q Consensus       352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~----egr~~~Aa~~l~kaAel~e~~~~y~  409 (535)
                      |...+.+|.++-...+.++|+.+|.+|++++..    +.....-..+..++.+.+.+.+...
T Consensus        15 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~LK   76 (93)
T d1wfda_          15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIK   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            566667777777777788899999988888643    3445555556666666666654443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.44  E-value=0.52  Score=47.56  Aligned_cols=90  Identities=7%  Similarity=0.059  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhc
Q psy11025        367 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLAR  445 (535)
Q Consensus       367 ~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~  445 (535)
                      +.++|+..|.+|+.+-.        ..++...|.++...++|++|+.+|+++.++.-.. ..+...|       ++....
T Consensus       135 ~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg-------~~~~~~  199 (497)
T d1ya0a1         135 HTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA-------ILASSK  199 (497)
T ss_dssp             --------CCHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH-------HHHHHT
T ss_pred             CHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH-------HHHHHc
Confidence            36677777777765432        2466777888888888888888888887765443 2344444       445567


Q ss_pred             CCHHHHHHHHHHhhhccCCCCccccccc
Q psy11025        446 GDTVAAEKAFKEWGNCCEAPERCESGSS  473 (535)
Q Consensus       446 ~D~vaA~~~~e~~~~~~~~~~f~~sre~  473 (535)
                      |+...|...|.+  ..+.++.|..++..
T Consensus       200 ~~~~~A~~~y~r--al~~~~~~~~a~~n  225 (497)
T d1ya0a1         200 GDHLTTIFYYCR--SIAVKFPFPAASTN  225 (497)
T ss_dssp             TCHHHHHHHHHH--HHSSSBCCHHHHHH
T ss_pred             CCHHHHHHHHHH--HHhCCCCCHHHHHH
Confidence            787777777765  12334445444433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=83.02  E-value=3.9  Score=37.57  Aligned_cols=21  Identities=5%  Similarity=-0.040  Sum_probs=15.8

Q ss_pred             HHHHhcCCHHHHHHHHHHhhh
Q psy11025        440 LVQLARGDTVAAEKAFKEWGN  460 (535)
Q Consensus       440 l~~L~~~D~vaA~~~~e~~~~  460 (535)
                      .+.+..||...|...+++...
T Consensus       107 ~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1         107 NLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHh
Confidence            456677899889998887544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.57  E-value=2  Score=35.46  Aligned_cols=13  Identities=0%  Similarity=-0.281  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHhc
Q psy11025        318 PDAALTLYSRAAD  330 (535)
Q Consensus       318 ~D~AA~lYekAA~  330 (535)
                      .|+|...|++|-.
T Consensus        13 fe~A~~~~e~al~   25 (145)
T d1zu2a1          13 FEQIRQDAENTYK   25 (145)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            4688888888754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=1.3  Score=44.55  Aligned_cols=59  Identities=12%  Similarity=0.039  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11025        355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI  419 (535)
Q Consensus       355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~  419 (535)
                      ++..-+.++... +.++|+.+|.+|+++.-..|.      .+...|-++...+++.+|+..|.++.
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~------~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455556666554 488999999999999877764      57788888888889999998888874