Psyllid ID: psy1114

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKKVQEELAGV
ccccccccccEEEEEEccccEEEEEcccccHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHcccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEEcHHcccHHHHHHHHHHHHcccHHHHcccccEEEEEEEcccEEEEEcccccccccccHHccccccccccccEEEEEEccccEEEEEEccccHHHHHHHHHHHHcccccccEEEEccccEEEEEcHHHHHHHHHHccccccccccccHHccccccccccccccccEEEEEccccEEEEEEccccHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEEcccccccHHHHHHHHHHHccHHHHHcccccEEEEEEEcccEEEEEEccccccccccccccccccccccccccEEEEEcccEEEccc
ccccccccccEEEEEEcccEEEEEEEccccHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHcHcccEEEcccccccccccccccccccEEEEEccccccccccccEEEEEEccHHHHccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHEEEHHHHHcHcccHHHHccccccccccccEEEEEEcccEEEEEEccHHcHHHHHHHHHHHHHcccccEEEEEEccccEEEEEccccEEEEEccccccccHHHHHHHHHcccccccccccccEEEEEEcccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHcHcccEEEEccccccccccccccccccEEEEEccccccccccccEEEEEEccHHHHccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHHEEHHHHHHHccccHHHcccccccccccccEEEEEEcccEEEEcc
mrgaygkpqgtvarvnigqpimsvrssdkfKPAVIEALRRAkfkfpgrqkiyvskkwgftkydreeyetlrdqnsyrycknkpypksrfcrgvpdpkirifdlgkkkakvedfplcvHLVSDEYEQLSSEALEAGRICCNkylvkncgkdqfhirmrlhPFHVIRINKMLSCagadrlqtgmrgaygkpqgtvarvnigqpimsvrssdkfKPAVIEALRRAkfkfpgrqkiyvskkwgftkydreEYETLRDQnrilhdahFDHWIIRLQtgmrgaygkpqgtvarvnigqpimsvrssdkfKPAVIEALRRAkfkfpgrqkiyvskkwgftkydreeyetlrdqnsyrycknkpypksrfcrgvpdpkirifdlgkkkakvedfplcvHLVSDEYEQLSSEALEAGRICCNkylvkncgkdqfhirmrlhPFHVIRINKMLscagadrfeldgcnvkyraehgpLAAWKKVQEELAGV
mrgaygkpqgtvarvnigqpimsvrssdkfKPAVIEALrrakfkfpgrqkiyvskkwgftkydreeyetlrdqnsyrycknkpypksrfcrgvpdPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGqpimsvrssdkfKPAVIEALrrakfkfpgrqkiyvskkwgftkydREEYETLRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARVNIgqpimsvrssdkfKPAVIEALrrakfkfpgrqkiyvskkwgftkydreeyetlrdqnsyrycknkpypksrfcrgvpdPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKKVQEELAGV
MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKKVQEELAGV
****************I***********KFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWK*********
***AYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADR********YGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKKVQEELAGV
********QGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKKVQEELAGV
****YGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKKVQEELAG*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRFELDGCNVKYRAEHGPLAAWKKVQEELAGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
O96647219 60S ribosomal protein L10 N/A N/A 0.45 0.986 0.793 2e-96
O61231218 60S ribosomal protein L10 yes N/A 0.389 0.857 0.890 3e-96
Q08200210 60S ribosomal protein L10 yes N/A 0.377 0.861 0.779 5e-84
A8D8X1214 60S ribosomal protein L10 N/A N/A 0.387 0.869 0.769 6e-84
Q29195214 60S ribosomal protein L10 yes N/A 0.387 0.869 0.769 6e-84
Q9XSI3214 60S ribosomal protein L10 yes N/A 0.387 0.869 0.769 6e-84
Q4R7Y2214 60S ribosomal protein L10 N/A N/A 0.389 0.873 0.769 8e-84
Q5R931214 60S ribosomal protein L10 yes N/A 0.387 0.869 0.769 8e-84
Q6PDV7214 60S ribosomal protein L10 yes N/A 0.387 0.869 0.769 9e-84
A9CB60214 60S ribosomal protein L10 N/A N/A 0.387 0.869 0.769 9e-84
>sp|O96647|RL10_BOMMA 60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1 Back     alignment and function desciption
 Score =  353 bits (906), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 173/218 (79%), Positives = 189/218 (86%), Gaps = 2/218 (0%)

Query: 71  RDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSE 130
           R    YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKK+A V+DFPLCVHLVSDEYEQLSSE
Sbjct: 4   RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSE 63

Query: 131 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQ 190
           ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA+GKPQ
Sbjct: 64  ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 123

Query: 191 GTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYET 250
           GTVARV IGQPIMSVRSSD++K  VIEALRRAKFKFPGRQKIYVSKKWGFTKY+R+E+E 
Sbjct: 124 GTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEK 183

Query: 251 LRDQNRILHDAHFDHWIIRLQTGMRGAYGKPQGTVARV 288
           LR++ R+ +D     +  R + G   A+ K Q  +  V
Sbjct: 184 LREEGRLANDGCIVQY--RPEHGPLDAWRKVQAEILNV 219

Bombyx mandarina (taxid: 7092)
>sp|O61231|RL10_DROME 60S ribosomal protein L10 OS=Drosophila melanogaster GN=RpL10 PE=2 SV=1 Back     alignment and function description
>sp|Q08200|RL10_CHICK 60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|A8D8X1|RL10_SHEEP 60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|Q29195|RL10_PIG 60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3 Back     alignment and function description
>sp|Q9XSI3|RL10_BOVIN 60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4 Back     alignment and function description
>sp|Q4R7Y2|RL10_MACFA 60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1 Back     alignment and function description
>sp|Q5R931|RL10_PONAB 60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3 Back     alignment and function description
>sp|Q6PDV7|RL10_RAT 60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3 Back     alignment and function description
>sp|A9CB60|RL10_PAPAN 60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
49532896219 QM protein [Plutella xylostella] 0.389 0.853 0.900 7e-97
195038917218 GH19580 [Drosophila grimshawi] gi|193895 0.389 0.857 0.895 9e-96
194876512218 GG16295 [Drosophila erecta] gi|190655574 0.389 0.857 0.895 9e-96
268306444219 ribosomal protein L10 [Manduca sexta] 0.389 0.853 0.890 2e-95
195400323218 GJ11194 [Drosophila virilis] gi|19414748 0.389 0.857 0.890 3e-95
389610563219 ribosomal protein L10 [Papilio polytes] 0.389 0.853 0.890 3e-95
209915545219 ribosomal protein L10 [Acyrthosiphon pis 0.389 0.853 0.884 4e-95
195151741218 GL21963 [Drosophila persimilis] gi|19846 0.389 0.857 0.895 5e-95
194767515218 GF20520 [Drosophila ananassae] gi|190618 0.389 0.857 0.895 6e-95
195355723218 GM22490 [Drosophila sechellia] gi|195496 0.389 0.857 0.890 6e-95
>gi|49532896|dbj|BAD26683.1| QM protein [Plutella xylostella] Back     alignment and taxonomy information
 Score =  360 bits (925), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 172/191 (90%), Positives = 179/191 (93%)

Query: 71  RDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSE 130
           R    YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKA V+DFPLCVHLVSDEYEQLSSE
Sbjct: 4   RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAAVDDFPLCVHLVSDEYEQLSSE 63

Query: 131 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQ 190
           ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA+GKPQ
Sbjct: 64  ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 123

Query: 191 GTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYET 250
           GTVARVNIGQPIMSVRSSD++K  VIEALRRAKFKFPGRQKIYVSK+WGFTKYDR+EYE 
Sbjct: 124 GTVARVNIGQPIMSVRSSDRWKANVIEALRRAKFKFPGRQKIYVSKRWGFTKYDRDEYEK 183

Query: 251 LRDQNRILHDA 261
           LRD NR+  D 
Sbjct: 184 LRDDNRLAQDG 194

Source: Plutella xylostella

Species: Plutella xylostella

Genus: Plutella

Family: Plutellidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195038917|ref|XP_001990834.1| GH19580 [Drosophila grimshawi] gi|193895030|gb|EDV93896.1| GH19580 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|194876512|ref|XP_001973791.1| GG16295 [Drosophila erecta] gi|190655574|gb|EDV52817.1| GG16295 [Drosophila erecta] Back     alignment and taxonomy information
>gi|268306444|gb|ACY95343.1| ribosomal protein L10 [Manduca sexta] Back     alignment and taxonomy information
>gi|195400323|ref|XP_002058767.1| GJ11194 [Drosophila virilis] gi|194147489|gb|EDW63196.1| GJ11194 [Drosophila virilis] Back     alignment and taxonomy information
>gi|389610563|dbj|BAM18893.1| ribosomal protein L10 [Papilio polytes] Back     alignment and taxonomy information
>gi|209915545|ref|NP_001129594.1| ribosomal protein L10 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195151741|ref|XP_002016797.1| GL21963 [Drosophila persimilis] gi|198462168|ref|XP_001352357.2| GA26129 [Drosophila pseudoobscura pseudoobscura] gi|194111854|gb|EDW33897.1| GL21963 [Drosophila persimilis] gi|198142350|gb|EAL29298.2| GA26129 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|194767515|ref|XP_001965861.1| GF20520 [Drosophila ananassae] gi|190618461|gb|EDV33985.1| GF20520 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195355723|ref|XP_002044339.1| GM22490 [Drosophila sechellia] gi|195496864|ref|XP_002095874.1| qm [Drosophila yakuba] gi|195592477|ref|XP_002085961.1| GD12046 [Drosophila simulans] gi|38047831|gb|AAR09818.1| similar to Drosophila melanogaster qm, partial [Drosophila yakuba] gi|194130637|gb|EDW52680.1| GM22490 [Drosophila sechellia] gi|194181975|gb|EDW95586.1| qm [Drosophila yakuba] gi|194197970|gb|EDX11546.1| GD12046 [Drosophila simulans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
FB|FBgn0024733218 RpL10 "Ribosomal protein L10" 0.395 0.871 0.894 8.4e-102
UNIPROTKB|Q90YV9215 RL10 "60S ribosomal protein l1 0.395 0.883 0.773 3.1e-85
UNIPROTKB|F1SI10214 RPL10L "Uncharacterized protei 0.372 0.836 0.804 1.7e-82
UNIPROTKB|Q96L21214 RPL10L "60S ribosomal protein 0.395 0.887 0.747 1.5e-81
UNIPROTKB|Q9XSI3214 RPL10 "60S ribosomal protein L 0.395 0.887 0.773 9.7e-80
UNIPROTKB|Q29195214 RPL10 "60S ribosomal protein L 0.395 0.887 0.773 9.7e-80
UNIPROTKB|Q08200210 RPL10 "60S ribosomal protein L 0.385 0.880 0.783 9.7e-80
UNIPROTKB|P27635214 RPL10 "60S ribosomal protein L 0.395 0.887 0.773 1.2e-79
RGD|621178214 Rpl10 "ribosomal protein L10" 0.395 0.887 0.773 1.2e-79
UNIPROTKB|Q2TBW8214 RPL10L "60S ribosomal protein 0.395 0.887 0.773 4.2e-79
FB|FBgn0024733 RpL10 "Ribosomal protein L10" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 913 (326.5 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
 Identities = 170/190 (89%), Positives = 176/190 (92%)

Query:    71 RDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSE 130
             R    YRYCKNKPYPKSRFCRGVPDPKIRIFDLG+KKA VEDFPLCVHLVSDEYEQLSSE
Sbjct:     4 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSE 63

Query:   131 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQ 190
             ALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA+GKPQ
Sbjct:    64 ALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 123

Query:   191 GTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYET 250
             GTVARV IGQPIMSVRSSD++K  VIEALRRAKFKFPGRQKIYVSKKWGFTKY+RE YE 
Sbjct:   124 GTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEE 183

Query:   251 LRDQNRILHD 260
             LRD NR+  D
Sbjct:   184 LRDDNRLEPD 193
GO:0006412 "translation" evidence=ISS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS
GO:0005840 "ribosome" evidence=IDA;NAS
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0043025 "neuronal cell body" evidence=IDA
GO:0051297 "centrosome organization" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
UNIPROTKB|Q90YV9 RL10 "60S ribosomal protein l10" [Ictalurus punctatus (taxid:7998)] Back     alignment and assigned GO terms
UNIPROTKB|F1SI10 RPL10L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q96L21 RPL10L "60S ribosomal protein L10-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XSI3 RPL10 "60S ribosomal protein L10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q29195 RPL10 "60S ribosomal protein L10" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q08200 RPL10 "60S ribosomal protein L10" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P27635 RPL10 "60S ribosomal protein L10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621178 Rpl10 "ribosomal protein L10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBW8 RPL10L "60S ribosomal protein L10-like" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q09127RL10A_SCHPONo assigned EC number0.66490.40200.8733yesN/A
Q93VT9RL101_ARATHNo assigned EC number0.66490.38950.85yesN/A
Q29195RL10_PIGNo assigned EC number0.76960.38750.8691yesN/A
Q09533RL10_CAEELNo assigned EC number0.70150.38950.8738yesN/A
Q6PDV7RL10_RATNo assigned EC number0.76960.38750.8691yesN/A
Q9XSI3RL10_BOVINNo assigned EC number0.76960.38750.8691yesN/A
Q8SR96RL10_ENCCUNo assigned EC number0.63380.37290.8173yesN/A
P86048RL10L_MOUSENo assigned EC number0.76960.38750.8691yesN/A
Q93W22RL103_ARATHNo assigned EC number0.68060.38950.8461yesN/A
O61231RL10_DROMENo assigned EC number0.89000.38950.8577yesN/A
Q96L21RL10L_HUMANNo assigned EC number0.74340.38950.8738yesN/A
Q6ZWV3RL10_MOUSENo assigned EC number0.76960.38750.8691yesN/A
Q08200RL10_CHICKNo assigned EC number0.77950.37700.8619yesN/A
Q9P769RL10B_SCHPONo assigned EC number0.66490.40200.8733yesN/A
P41805RL10_YEASTNo assigned EC number0.68080.38750.8416yesN/A
Q54J69RL10_DICDINo assigned EC number0.71500.37910.8387yesN/A
P27635RL10_HUMANNo assigned EC number0.76960.38750.8691yesN/A
Q08770RL102_ARATHNo assigned EC number0.67530.38950.8461yesN/A
Q0ITS8RL101_ORYSJNo assigned EC number0.69100.38950.8348yesN/A
Q2TBW8RL10L_BOVINNo assigned EC number0.76960.38750.8691yesN/A
Q5R931RL10_PONABNo assigned EC number0.76960.38750.8691yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
PTZ00173213 PTZ00173, PTZ00173, 60S ribosomal protein L10; Pro 1e-125
TIGR00279172 TIGR00279, L10e, ribosomal protein L10 5e-71
PTZ00173213 PTZ00173, PTZ00173, 60S ribosomal protein L10; Pro 1e-69
PRK04199172 PRK04199, rpl10e, 50S ribosomal protein L10e; Revi 1e-51
TIGR00279172 TIGR00279, L10e, ribosomal protein L10 3e-41
PTZ00173213 PTZ00173, PTZ00173, 60S ribosomal protein L10; Pro 1e-39
cd01433112 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L 1e-39
COG0197146 COG0197, RplP, Ribosomal protein L16/L10E [Transla 1e-35
PTZ00173213 PTZ00173, PTZ00173, 60S ribosomal protein L10; Pro 4e-35
PRK04199172 PRK04199, rpl10e, 50S ribosomal protein L10e; Revi 1e-27
pfam00252129 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L 7e-25
TIGR00279172 TIGR00279, L10e, ribosomal protein L10 1e-19
COG0197146 COG0197, RplP, Ribosomal protein L16/L10E [Transla 9e-19
TIGR00279172 TIGR00279, L10e, ribosomal protein L10 3e-17
cd01433112 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L 4e-17
cd01433112 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L 8e-16
PRK04199172 PRK04199, rpl10e, 50S ribosomal protein L10e; Revi 3e-14
cd01433112 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L 9e-14
PRK04199172 PRK04199, rpl10e, 50S ribosomal protein L10e; Revi 1e-11
pfam00252129 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L 2e-11
COG0197146 COG0197, RplP, Ribosomal protein L16/L10E [Transla 1e-08
pfam00252129 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L 2e-07
pfam00252129 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L 2e-07
COG0197146 COG0197, RplP, Ribosomal protein L16/L10E [Transla 6e-07
>gnl|CDD|185498 PTZ00173, PTZ00173, 60S ribosomal protein L10; Provisional Back     alignment and domain information 
 Score =  362 bits (930), Expect = e-125
 Identities = 136/192 (70%), Positives = 162/192 (84%)

Query: 76  YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAG 135
           YRYCKNKPYPKSRFCRGVPDPKIRI+D+G+KKA V++FP+CVH+VSDEYEQ+SSEALEA 
Sbjct: 9   YRYCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVDEFPVCVHIVSDEYEQISSEALEAA 68

Query: 136 RICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVAR 195
           RI  NKY+VK  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGA+GKP GT AR
Sbjct: 69  RISANKYMVKRAGKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCAR 128

Query: 196 VNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQN 255
           V IGQ ++S+R+ + + P  IEALRRAK+KFPGRQKI VS KWGFT Y REEY+ LR + 
Sbjct: 129 VRIGQILLSIRTKEAYVPQAIEALRRAKYKFPGRQKIVVSNKWGFTNYTREEYQKLRAEG 188

Query: 256 RILHDAHFDHWI 267
           +++ D      I
Sbjct: 189 KLIQDGVHVKLI 200

Length = 213
>gnl|CDD|129380 TIGR00279, L10e, ribosomal protein L10 Back     alignment and domain information
>gnl|CDD|185498 PTZ00173, PTZ00173, 60S ribosomal protein L10; Provisional Back     alignment and domain information
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>gnl|CDD|129380 TIGR00279, L10e, ribosomal protein L10 Back     alignment and domain information
>gnl|CDD|185498 PTZ00173, PTZ00173, 60S ribosomal protein L10; Provisional Back     alignment and domain information
>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|185498 PTZ00173, PTZ00173, 60S ribosomal protein L10; Provisional Back     alignment and domain information
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e Back     alignment and domain information
>gnl|CDD|129380 TIGR00279, L10e, ribosomal protein L10 Back     alignment and domain information
>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129380 TIGR00279, L10e, ribosomal protein L10 Back     alignment and domain information
>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e Back     alignment and domain information
>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e Back     alignment and domain information
>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e Back     alignment and domain information
>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
PTZ00173213 60S ribosomal protein L10; Provisional 100.0
TIGR00279172 L10e ribosomal protein L10.e. L10.e is distantly r 100.0
KOG0857|consensus212 100.0
PRK04199172 rpl10e 50S ribosomal protein L10e; Reviewed 100.0
PTZ00173213 60S ribosomal protein L10; Provisional 100.0
TIGR00279172 L10e ribosomal protein L10.e. L10.e is distantly r 100.0
COG0197146 RplP Ribosomal protein L16/L10E [Translation, ribo 100.0
PRK04199172 rpl10e 50S ribosomal protein L10e; Reviewed 100.0
KOG0857|consensus212 100.0
cd01433112 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an e 99.97
PF00252133 Ribosomal_L16: Ribosomal protein L16p/L10e; InterP 99.97
PRK09203138 rplP 50S ribosomal protein L16; Reviewed 99.97
TIGR01164126 rplP_bact ribosomal protein L16, bacterial/organel 99.96
CHL00044135 rpl16 ribosomal protein L16 99.96
COG0197146 RplP Ribosomal protein L16/L10E [Translation, ribo 99.91
KOG3422|consensus221 99.71
PF00252133 Ribosomal_L16: Ribosomal protein L16p/L10e; InterP 99.41
cd01433112 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an e 99.18
TIGR01164126 rplP_bact ribosomal protein L16, bacterial/organel 99.02
PRK09203138 rplP 50S ribosomal protein L16; Reviewed 98.86
CHL00044135 rpl16 ribosomal protein L16 98.81
KOG3422|consensus221 83.95
>PTZ00173 60S ribosomal protein L10; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-89  Score=652.64  Aligned_cols=202  Identities=68%  Similarity=1.194  Sum_probs=200.3

Q ss_pred             ccccccccccccCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhc
Q psy1114          68 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC  147 (480)
Q Consensus        68 M~rrParcYR~~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~  147 (480)
                      |+||||||||+|+|||||||+||+|||||||++|||||++|+|||||+|+||+|+|.+||||+||||||+|+||||.|.+
T Consensus         1 M~~rParcYr~~~~~pY~r~~y~~gvP~~kI~~fd~G~~~a~~~~fp~~v~Lvs~E~~qIss~aLEAaRia~nr~l~K~~   80 (213)
T PTZ00173          1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIYDIGRKKATVDEFPVCVHIVSDEYEQISSEALEAARISANKYMVKRA   80 (213)
T ss_pred             CCCCchhhhhcccCCCCchhhccCCCCCCcEEEEecCCCcCCcccCCeEEEEEEcccccccHHHHHHHHHHHHHhhhhhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCC
Q psy1114         148 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFP  227 (480)
Q Consensus       148 Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP  227 (480)
                      |+|+||||||+|||||||||||||||||||||+|||+|||+|+||||||++||+||||+++++++++|+|||++|++|||
T Consensus        81 Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~~KlP  160 (213)
T PTZ00173         81 GKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAKYKFP  160 (213)
T ss_pred             CCccceEEEEEcCCcccccccccccccCchhhhhcccCCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeCCccccccChHHHHHHHhcCceeecCceeEeehh
Q psy1114         228 GRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIR  269 (480)
Q Consensus       228 ~~~kIvis~~wgfT~~~~~e~~~~~~~~~l~~dG~~vk~iDR  269 (480)
                      ++|+|+++++||||+|++|||++|+++|+|++|||+||++.+
T Consensus       161 ~~~kIv~~~~wgft~~~~~~~~~~~~~~~~~~~g~~~~~~~~  202 (213)
T PTZ00173        161 GRQKIVVSNKWGFTNYTREEYQKLRAEGKLIQDGVHVKLISP  202 (213)
T ss_pred             CeEEEEEecccCccccCHHHHHHHHHCCeEecCCceEEEeCC
Confidence            999999999999999999999999999999999999999974

>TIGR00279 L10e ribosomal protein L10 Back     alignment and domain information
>KOG0857|consensus Back     alignment and domain information
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>PTZ00173 60S ribosomal protein L10; Provisional Back     alignment and domain information
>TIGR00279 L10e ribosomal protein L10 Back     alignment and domain information
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed Back     alignment and domain information
>KOG0857|consensus Back     alignment and domain information
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK09203 rplP 50S ribosomal protein L16; Reviewed Back     alignment and domain information
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle Back     alignment and domain information
>CHL00044 rpl16 ribosomal protein L16 Back     alignment and domain information
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3422|consensus Back     alignment and domain information
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts Back     alignment and domain information
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle Back     alignment and domain information
>PRK09203 rplP 50S ribosomal protein L16; Reviewed Back     alignment and domain information
>CHL00044 rpl16 ribosomal protein L16 Back     alignment and domain information
>KOG3422|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
2zkr_h214 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-84
2zkr_h214 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-50
3izr_I224 Localization Of The Large Subunit Ribosomal Protein 5e-75
3izr_I224 Localization Of The Large Subunit Ribosomal Protein 5e-43
3izs_I221 Localization Of The Large Subunit Ribosomal Protein 3e-73
3izs_I221 Localization Of The Large Subunit Ribosomal Protein 2e-43
3j0l_J219 Core Of Mammalian 80s Pre-Ribosome In Complex With 4e-73
3j0l_J219 Core Of Mammalian 80s Pre-Ribosome In Complex With 2e-43
3zf7_K213 High-resolution Cryo-electron Microscopy Structure 1e-72
3zf7_K213 High-resolution Cryo-electron Microscopy Structure 8e-43
2pa2_A151 Crystal Structure Of Human Ribosomal Protein L10 Co 5e-69
2pa2_A151 Crystal Structure Of Human Ribosomal Protein L10 Co 2e-35
1s1i_I168 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-65
1s1i_I168 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-43
3jyw_I165 Structure Of The 60s Proteins For Eukaryotic Riboso 3e-65
3jyw_I165 Structure Of The 60s Proteins For Eukaryotic Riboso 3e-43
4a17_H215 T.Thermophila 60s Ribosomal Subunit In Complex With 3e-63
4a17_H215 T.Thermophila 60s Ribosomal Subunit In Complex With 3e-37
3j21_N181 Promiscuous Behavior Of Proteins In Archaeal Riboso 7e-26
3j21_N181 Promiscuous Behavior Of Proteins In Archaeal Riboso 8e-16
3i55_H174 Co-Crystal Structure Of Mycalamide A Bound To The L 2e-21
3i55_H174 Co-Crystal Structure Of Mycalamide A Bound To The L 9e-13
1yhq_H177 Crystal Structure Of Azithromycin Bound To The G209 2e-21
1yhq_H177 Crystal Structure Of Azithromycin Bound To The G209 1e-12
1s72_H171 Refined Crystal Structure Of The Haloarcula Marismo 3e-21
1s72_H171 Refined Crystal Structure Of The Haloarcula Marismo 1e-12
2qex_H174 Negamycin Binds To The Wall Of The Nascent Chain Ex 3e-21
2qex_H174 Negamycin Binds To The Wall Of The Nascent Chain Ex 1e-12
1jj2_H167 Fully Refined Crystal Structure Of The Haloarcula M 1e-17
1jj2_H167 Fully Refined Crystal Structure Of The Haloarcula M 2e-10
1ffk_F157 Crystal Structure Of The Large Ribosomal Subunit Fr 6e-08
1ffk_F157 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-05
1giy_P138 Crystal Structure Of The Ribosome At 5.5 A Resoluti 2e-05
>pdb|2ZKR|HH Chain h, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 214 Back     alignment and structure 
Iteration: 1

 Score =  310 bits (794), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 146/191 (76%), Positives = 169/191 (88%)
Query: 71  RDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSE 130
           R    YRYCKNKPYPKSRFCRGVPD KIRIFDLG+KKAKV++FPLC H+VSDEYEQLSSE
Sbjct: 4   RPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSE 63
Query: 131 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQ 190
           ALEA RIC NKY+VK+CGKD FHIR+RLHPFHVIRINKMLSCAGADRLQTGMRGA+GKPQ
Sbjct: 64  ALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 123
Query: 191 GTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYET 250
           GTVA+V+IGQ IMS+R+  + K  VIEALRRAKFKFPGRQKI++SKKWGFTK++ +E+E 
Sbjct: 124 GTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEN 183
Query: 251 LRDQNRILHDA 261
           +  + R++ D 
Sbjct: 184 MVAEKRLIPDG 194
>pdb|2ZKR|HH Chain h, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 214 Back     alignment and structure
>pdb|3IZR|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 224 Back     alignment and structure
>pdb|3IZR|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 224 Back     alignment and structure
>pdb|3IZS|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 221 Back     alignment and structure
>pdb|3IZS|I Chain I, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 221 Back     alignment and structure
>pdb|3J0L|J Chain J, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 219 Back     alignment and structure
>pdb|3J0L|J Chain J, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 219 Back     alignment and structure
>pdb|3ZF7|K Chain K, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 213 Back     alignment and structure
>pdb|3ZF7|K Chain K, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 213 Back     alignment and structure
>pdb|2PA2|A Chain A, Crystal Structure Of Human Ribosomal Protein L10 Core Domain Length = 151 Back     alignment and structure
>pdb|2PA2|A Chain A, Crystal Structure Of Human Ribosomal Protein L10 Core Domain Length = 151 Back     alignment and structure
>pdb|1S1I|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 168 Back     alignment and structure
>pdb|1S1I|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 168 Back     alignment and structure
>pdb|3JYW|I Chain I, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 165 Back     alignment and structure
>pdb|3JYW|I Chain I, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 165 Back     alignment and structure
>pdb|4A17|H Chain H, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 215 Back     alignment and structure
>pdb|4A17|H Chain H, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 215 Back     alignment and structure
>pdb|3J21|N Chain N, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 181 Back     alignment and structure
>pdb|3J21|N Chain N, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 181 Back     alignment and structure
>pdb|3I55|H Chain H, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit Length = 174 Back     alignment and structure
>pdb|3I55|H Chain H, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit Length = 174 Back     alignment and structure
>pdb|1YHQ|H Chain H, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 177 Back     alignment and structure
>pdb|1YHQ|H Chain H, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 177 Back     alignment and structure
>pdb|1S72|H Chain H, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 171 Back     alignment and structure
>pdb|1S72|H Chain H, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 171 Back     alignment and structure
>pdb|2QEX|H Chain H, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit Length = 174 Back     alignment and structure
>pdb|2QEX|H Chain H, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit Length = 174 Back     alignment and structure
>pdb|1JJ2|H Chain H, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 167 Back     alignment and structure
>pdb|1JJ2|H Chain H, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 167 Back     alignment and structure
>pdb|1FFK|F Chain F, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 157 Back     alignment and structure
>pdb|1FFK|F Chain F, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 157 Back     alignment and structure
>pdb|1GIY|P Chain P, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 3e-82
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 4e-39
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 5e-29
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 6e-27
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 6e-82
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 3e-38
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 2e-29
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 2e-27
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 4e-04
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 2e-81
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 3e-38
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 5e-29
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 6e-27
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 7e-04
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 3e-80
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 7e-38
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 2e-28
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 2e-26
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 1e-70
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 5e-39
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 9e-21
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 2e-18
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 1e-68
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 1e-29
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 4e-28
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 1e-27
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 4e-62
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 2e-34
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 1e-19
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 1e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosom 8e-08
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosom 1e-04
2ftc_I118 Mitochondrial ribosomal protein L16, 39S ribosomal 2e-06
3r8s_M136 50S ribosomal protein L16; protein biosynthesis, R 2e-05
3bbo_O135 Ribosomal protein L16; large ribosomal subunit, sp 1e-04
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Length = 215 Back     alignment and structure
 Score =  252 bits (645), Expect = 3e-82
 Identities = 114/185 (61%), Positives = 140/185 (75%)

Query: 76  YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAG 135
           YR  K KPYPKSR+ RGVPD +IRI+D G+KKA VE+FP  VH+VSDE EQ++SEALEA 
Sbjct: 9   YRQPKGKPYPKSRYNRGVPDARIRIYDSGRKKATVEEFPYVVHIVSDEKEQITSEALEAA 68

Query: 136 RICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVAR 195
           RI  NK L+K   KD FH+R R+HP+HV+RINKMLSCAGADRLQ+GMRGA+GK  G  AR
Sbjct: 69  RIAANKNLIKFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAAR 128

Query: 196 VNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSKKWGFTKYDREEYETLRDQN 255
           V+IG  + SVR  +      I+AL RAK KFPGRQK+  S+KWGFTK  R +Y  LR+Q 
Sbjct: 129 VDIGSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQYSRLRNQK 188

Query: 256 RILHD 260
           +++ D
Sbjct: 189 KLVTD 193
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Length = 215 Back     alignment and structure
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Length = 215 Back     alignment and structure
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Length = 215 Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214 Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214 Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214 Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214 Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214 Back     alignment and structure
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I Length = 219 Back     alignment and structure
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I Length = 219 Back     alignment and structure
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I Length = 219 Back     alignment and structure
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I Length = 219 Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171 Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171 Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171 Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171 Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151 Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151 Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151 Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151 Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157 Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157 Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157 Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Length = 142 Back     alignment and structure
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Length = 142 Back     alignment and structure
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I Length = 118 Back     alignment and structure
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Length = 136 Back     alignment and structure
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 135 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 100.0
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 100.0
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 100.0
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 100.0
3j21_N181 50S ribosomal protein L10E; archaea, archaeal, KIN 100.0
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 100.0
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 100.0
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 100.0
4a17_H215 RPL10, 60S ribosomal protein L10; eukaryotic ribos 100.0
3j0l_J219 Ribosomal protein L10; mammalia, translation, elon 100.0
3iz5_I224 60S ribosomal protein L10 (L10E); eukaryotic ribos 100.0
2zkr_h214 60S ribosomal protein L10; protein-RNA complex, 60 100.0
3j21_N181 50S ribosomal protein L10E; archaea, archaeal, KIN 100.0
1vq8_H171 50S ribosomal protein L10E; ribosome 50S, protein- 100.0
1ffk_F157 Ribosomal protein L10E; ribosome assembly, RNA-RNA 100.0
2ftc_I118 Mitochondrial ribosomal protein L16, 39S ribosomal 100.0
3r8s_M136 50S ribosomal protein L16; protein biosynthesis, R 100.0
2pa2_A151 60S ribosomal protein L10; QM protein, , structura 100.0
3bbo_O135 Ribosomal protein L16; large ribosomal subunit, sp 100.0
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosom 99.98
2zjr_J142 50S ribosomal protein L16; ribosome, large ribosom 99.27
2ftc_I118 Mitochondrial ribosomal protein L16, 39S ribosomal 99.25
3r8s_M136 50S ribosomal protein L16; protein biosynthesis, R 99.16
3bbo_O135 Ribosomal protein L16; large ribosomal subunit, sp 98.93
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Back     alignment and structure
Probab=100.00  E-value=8.2e-93  Score=673.51  Aligned_cols=202  Identities=57%  Similarity=0.917  Sum_probs=188.6

Q ss_pred             ccccccccccccCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhc
Q psy1114          68 ETLRDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNC  147 (480)
Q Consensus        68 M~rrParcYR~~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~  147 (480)
                      ||+|||||||||+|||||||+||+|||||||+||||||++|+|||||+|+||+|+|++||||+||||||||+||||++++
T Consensus         1 M~~rParcYr~~~~~pY~r~~y~~GvP~~KI~~fd~G~kka~~~~fp~~~~L~a~E~~qIss~qIEAARia~nRyl~r~~   80 (215)
T 4a17_H            1 MGRRPARCYRQPKGKPYPKSRYNRGVPDARIRIYDSGRKKATVEEFPYVVHIVSDEKEQITSEALEAARIAANKNLIKFI   80 (215)
T ss_dssp             -CCCCGGGTSSCCSCCCCSCTTCCSCCCCSCCCCEEECTTCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCcHHhhccccCCCCchhhccCCCCCCcEEEEeCCCCcCCcccCCeeEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCC
Q psy1114         148 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFP  227 (480)
Q Consensus       148 Gk~~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP  227 (480)
                      |+|+||||||+|||||||+|||||||||||||+|||+|||+|+||||||++||+||||+++++|+++|+|||++|++|||
T Consensus        81 GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~KlP  160 (215)
T 4a17_H           81 SKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKAKFP  160 (215)
T ss_dssp             CGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGGGSS
T ss_pred             CCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeCCccccccChHHHHHHHhcCceeecCceeEeehh
Q psy1114         228 GRQKIYVSKKWGFTKYDREEYETLRDQNRILHDAHFDHWIIR  269 (480)
Q Consensus       228 ~~~kIvis~~wgfT~~~~~e~~~~~~~~~l~~dG~~vk~iDR  269 (480)
                      ++|+|+++++||||+|++|||++|++||+|++|||+||||++
T Consensus       161 ~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~k~~~~  202 (215)
T 4a17_H          161 GRQKVVTSQKWGFTKLTRAQYSRLRNQKKLVTDGSNVKVIGE  202 (215)
T ss_dssp             SCEEEEEESBCTTSSSBHHHHHHHHHTTCEEEETTEEEECCT
T ss_pred             CceEEEEccccCCCccCHHHHHHHHHCCeEecCCccEEEccC
Confidence            999999999999999999999999999999999999999975
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Back     alignment and structure
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Back     alignment and structure
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I Back     alignment and structure
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Back     alignment and structure
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Back     alignment and structure
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I Back     alignment and structure
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Back     alignment and structure
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Back     alignment and structure
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Back     alignment and structure
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Back     alignment and structure
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I Back     alignment and structure
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Back     alignment and structure
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 480
d1jj2h_167 d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Hal 2e-70
d1jj2h_167 d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Hal 6e-45
d1jj2h_167 d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Hal 1e-15
d1jj2h_167 d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Hal 4e-13
d1vqoh1163 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeo 2e-70
d1vqoh1163 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeo 1e-43
d1vqoh1163 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeo 7e-17
d1vqoh1163 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeo 2e-14
d2pa2a1137 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human 2e-65
d2pa2a1137 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human 2e-28
d2pa2a1137 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human 3e-27
d2pa2a1137 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human 2e-24
d2gyck1131 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escheri 2e-06
d2j01q1136 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus 4e-05
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  219 bits (559), Expect = 2e-70
 Identities = 58/161 (36%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 76  YRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAG 135
           YR      Y +  +  G+P  KI  FD+G   A    +P  V LV ++  Q+   ALEA 
Sbjct: 6   YRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAG-PTYPAQVELVVEKPVQIRHNALEAA 64

Query: 136 RICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVAR 195
           R+  N+Y+  +     +  R+R  PFHVIR NK  + A A     GMR  +GKP GT AR
Sbjct: 65  RVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPVGTAAR 124

Query: 196 VNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGRQKIYVSK 236
           V+    I     +    P V EA RRAK K      I  S 
Sbjct: 125 VHGANHIFIAWVNP--DPNVEEAWRRAKMKVTPTINIDSSP 163
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167 Back     information, alignment and structure
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167 Back     information, alignment and structure
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167 Back     information, alignment and structure
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Back     information, alignment and structure
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Back     information, alignment and structure
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Back     information, alignment and structure
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Length = 131 Back     information, alignment and structure
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Length = 136 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d1vqoh1163 Ribosomal protein L10e {Archaeon Haloarcula marism 100.0
d1jj2h_167 Ribosomal protein L10e {Archaeon Haloarcula marism 100.0
d2pa2a1137 Ribosomal protein L10e {Human (Homo sapiens) [TaxI 100.0
d1jj2h_167 Ribosomal protein L10e {Archaeon Haloarcula marism 100.0
d1vqoh1163 Ribosomal protein L10e {Archaeon Haloarcula marism 100.0
d2pa2a1137 Ribosomal protein L10e {Human (Homo sapiens) [TaxI 99.94
d2gyck1131 Ribosomal protein L16p {Escherichia coli [TaxId: 5 99.93
d2j01q1136 Ribosomal protein L16p {Thermus thermophilus [TaxI 99.92
d2gyck1131 Ribosomal protein L16p {Escherichia coli [TaxId: 5 96.98
d2j01q1136 Ribosomal protein L16p {Thermus thermophilus [TaxI 93.34
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.8e-67  Score=481.66  Aligned_cols=162  Identities=33%  Similarity=0.579  Sum_probs=148.7

Q ss_pred             cccccccccCCCCCCCcccccCCCCCceEEEeCCCCCCCCCCCceeEEEeeccccccchhHHHHHHHHhhhhhhhhcCCC
Q psy1114          71 RDQNSYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKKAKVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD  150 (480)
Q Consensus        71 rParcYR~~k~kpY~rs~y~rGvP~~KI~~fD~G~kka~v~efp~~v~Lvs~E~~qIss~ALEAARIaaNKyl~K~~Gk~  150 (480)
                      |||+|||++++|||||++||+|||++||++|||||++++.+|||+|++|+++|.+||||+||||||+|+||||.+.+|++
T Consensus         1 rP~~~yr~~~~~~ytr~~yi~gvp~~kI~~f~~G~~~~~~~~f~~~~~L~a~e~~~i~~~~iEAaR~a~~r~l~k~~G~~   80 (163)
T d1vqoh1           1 KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEE   80 (163)
T ss_dssp             CCGGGTSSCCSCCCCCTTSCCCCCCCCCCCSEEECTTSCGGGCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCcccccCCCCCCCccccccCCCCCcceEEeccCCccccccccceEEEEEEcccceecHHHHHHHHHHHHhhhhhhcCcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             -ceeEEEEeCCCceeeecccccccccchhhccccCCCCCcceEEEEeeCCCeEEEEEecCCCHHHHHHHHHHcccCCCCc
Q psy1114         151 -QFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAYGKPQGTVARVNIGQPIMSVRSSDKFKPAVIEALRRAKFKFPGR  229 (480)
Q Consensus       151 -~fhlrIRv~P~hVlr~nKMls~AGADRLqtGMr~afGKP~G~vARV~~GqvIfsv~~k~~~~~~AkEALrrA~~KlP~~  229 (480)
                       |||||||+|||||||+|||+|||||||||+|||+|||+|+||||||++||+||||++++++.++|+|||++|++|||.+
T Consensus        81 ~~~~~~irvfP~~~v~~kp~~~~agadrl~~~Mg~gkG~p~~~aArVk~G~ilfei~~~~~~~~~akeALr~A~~KLP~~  160 (163)
T d1vqoh1          81 GDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPS  160 (163)
T ss_dssp             CSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHGGGSSSC
T ss_pred             ccceEEEEecCcceeecChhhhhcccccccccccCCCCCccEEEEEECCCCEEEEEEeccccHHHHHHHHHHHhccCCCc
Confidence             6999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEE
Q psy1114         230 QKI  232 (480)
Q Consensus       230 ~kI  232 (480)
                      |+|
T Consensus       161 tkI  163 (163)
T d1vqoh1         161 CRI  163 (163)
T ss_dssp             EEE
T ss_pred             eEC
Confidence            997
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure