Psyllid ID: psy11172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MSWSGEIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSPH
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHcccEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccHHHHHHHHHHHcccEEEcccccccEccccccHHHHHHHHHHHHHHHHHHHccccccccccccEccccc
Coil and Loop (DISEMBL)
mswsgeipnhkpiVSLVKsgqleivtggwvmtdeaNSHYYSMIQQLTHGQQWLLtnigvkprylhnnsrtissph
Flexible Loop (DISEMBL)
mswsgeipnhkpiVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRylhnnsrtissph
Low Complexity Region (SEG)
MSWSGEIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSPH
Disordered region (IsUnstruct)
***********PIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLH**********
Disordered Region (DISOPRED)
MSWS***PNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS***
Disordered Region (DISEMBL)
********NHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSPH
Disordered Region (DISPRO)
MSWSGEIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSWSGEIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSPH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
P27046	1150	Alpha-mannosidase 2 OS=Mu	yes	N/A	0.76	0.049	0.596	3e-15
P28494	489	Alpha-mannosidase 2 (Frag	no	N/A	0.733	0.112	0.6	1e-14
Q16706	1144	Alpha-mannosidase 2 OS=Ho	yes	N/A	0.76	0.049	0.596	2e-14
P49641	1150	Alpha-mannosidase 2x OS=H	no	N/A	0.626	0.040	0.659	8e-13
Q8BRK9	1152	Alpha-mannosidase 2x OS=M	no	N/A	0.626	0.040	0.638	1e-12
Q24451	1108	Alpha-mannosidase 2 OS=Dr	no	N/A	0.626	0.042	0.617	6e-10
P34098	1010	Lysosomal alpha-mannosida	yes	N/A	0.626	0.046	0.510	1e-07
Q54YF7	1035	Alpha-mannosidase B OS=Di	no	N/A	0.666	0.048	0.46	1e-06
O09159	1013	Lysosomal alpha-mannosida	no	N/A	0.613	0.045	0.456	2e-06
O46432	1007	Lysosomal alpha-mannosida	N/A	N/A	0.626	0.046	0.468	4e-05

>sp|P27046|MA2A1_MOUSE Alpha-mannosidase 2 OS=Mus musculus GN=Man2a1 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +IP  + + SL+++GQLEIVTGGWVM DEA  HY+++I QL  G QWL  N+GVKPR
Sbjct: 226 DIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLEKNLGVKPR 282

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1EC: 4

>sp|P28494|MA2A1_RAT Alpha-mannosidase 2 (Fragment) OS=Rattus norvegicus GN=Man2a1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 8   PNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           P  + + SL+++GQLEIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKPR
Sbjct: 195 PKKEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIEGHQWLEKNLGVKPR 249

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q16706|MA2A1_HUMAN Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +I     + SL+++GQLEIVTGGWVM DEA  HY+++I QL  G QWL  NIGVKPR
Sbjct: 227 DIQKKDAVKSLIENGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLENNIGVKPR 283

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|P49641|MA2A2_HUMAN Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 36/47 (76%)

Query: 16  LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           LV +GQLEI TGGWVM DEANSHY+++I QL  G QWL  N+G  PR
Sbjct: 237 LVGNGQLEIATGGWVMPDEANSHYFALIDQLIEGHQWLERNLGATPR 283

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q8BRK9|MA2A2_MOUSE Alpha-mannosidase 2x OS=Mus musculus GN=Man2a2 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query: 16  LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           LV +GQLEI TGGWVM DEANSHY++++ QL  G QWL  N+G  PR
Sbjct: 237 LVGNGQLEIATGGWVMPDEANSHYFALVDQLIEGHQWLERNLGATPR 283

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q24451|MAN2_DROME Alpha-mannosidase 2 OS=Drosophila melanogaster GN=alpha-Man-II PE=1 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 15  SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P
Sbjct: 214 SIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTP 260

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|P34098|MANA_DICDI Lysosomal alpha-mannosidase OS=Dictyostelium discoideum GN=manA PE=1 SV=2

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 16  LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           LV+SGQLE + GG+ M DEA ++Y   I Q+T G Q+L  N GV P+
Sbjct: 121 LVESGQLEFINGGYCMNDEATTYYDDTIDQMTLGHQFLWENFGVMPK 167

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q54YF7|MANB_DICDI Alpha-mannosidase B OS=Dictyostelium discoideum GN=manB PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           + +LV +GQL  V GGW   DE  +HY ++I Q+T G Q+LL+  GV P 
Sbjct: 106 VRNLVNNGQLYFVGGGWAQNDEGATHYQAVINQMTLGHQFLLSEFGVVPE 155

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|O09159|MA2B1_MOUSE Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=4

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIG 58
           + +LV+ G+LE V GGWVM DEA +HY +++ Q+T G ++L    G
Sbjct: 139 VRNLVRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFG 184

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|O46432|MA2B1_FELCA Lysosomal alpha-mannosidase OS=Felis catus GN=MAN2B1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 30/47 (63%)

Query: 16  LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           LV+ G+LE   GGWVM DEA +HY ++I Q+T G ++L    G   R
Sbjct: 143 LVRQGRLEFANGGWVMNDEAATHYGAIIDQMTLGLRFLEDTFGKDGR 189

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Felis catus (taxid: 9685)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
354474392	1147	PREDICTED: alpha-mannosidase 2 [Cricetul	0.76	0.049	0.614	2e-14
344247928	1099	Alpha-mannosidase 2 [Cricetulus griseus]	0.76	0.051	0.614	2e-14
348587406	1206	PREDICTED: alpha-mannosidase 2-like [Cav	0.76	0.047	0.614	4e-14
226246610	1150	alpha-mannosidase 2 [Mus musculus] gi|34	0.76	0.049	0.596	1e-13
49944	1150	mannosyl-oligosaccharide 1,3-1,6-alpha-m	0.76	0.049	0.596	1e-13
148706344	1179	mannosidase 2, alpha 1 [Mus musculus]	0.76	0.048	0.596	1e-13
351701125	1160	Alpha-mannosidase 2 [Heterocephalus glab	0.76	0.049	0.596	1e-13
410904367	1138	PREDICTED: LOW QUALITY PROTEIN: alpha-ma	0.8	0.052	0.596	2e-13
189339241	1148	alpha-mannosidase 2 [Rattus norvegicus]	0.733	0.047	0.6	2e-13
355691512	1106	Alpha-mannosidase 2 [Macaca mulatta]	0.76	0.051	0.596	3e-13

>gi|354474392|ref|XP_003499415.1| PREDICTED: alpha-mannosidase 2 [Cricetulus griseus]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +IP  + + SL++SGQLEIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKPR
Sbjct: 226 DIPKKEAVKSLLQSGQLEIVTGGWVMPDEATAHYFALIDQLIEGHQWLEKNLGVKPR 282

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344247928|gb|EGW04032.1| Alpha-mannosidase 2 [Cricetulus griseus]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +IP  + + SL++SGQLEIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKPR
Sbjct: 226 DIPKKEAVKSLLQSGQLEIVTGGWVMPDEATAHYFALIDQLIEGHQWLEKNLGVKPR 282

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348587406|ref|XP_003479459.1| PREDICTED: alpha-mannosidase 2-like [Cavia porcellus]

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +IP  + + SL+++GQLEIVTGGWVM DEA SHY+++I QL  G QWL  N+GVKPR
Sbjct: 287 DIPKKEAVKSLLQNGQLEIVTGGWVMPDEATSHYFALIDQLIEGHQWLEKNLGVKPR 343

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226246610|ref|NP_032575.2| alpha-mannosidase 2 [Mus musculus] gi|341940926|sp|P27046.2|MA2A1_MOUSE RecName: Full=Alpha-mannosidase 2; AltName: Full=Golgi alpha-mannosidase II; Short=AMan II; Short=Man II; AltName: Full=Mannosidase alpha class 2A member 1; AltName: Full=Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase gi|223459904|gb|AAI38373.1| Mannosidase 2, alpha 1 [Mus musculus] gi|223461030|gb|AAI38372.1| Mannosidase 2, alpha 1 [Mus musculus]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +IP  + + SL+++GQLEIVTGGWVM DEA  HY+++I QL  G QWL  N+GVKPR
Sbjct: 226 DIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLEKNLGVKPR 282

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|49944|emb|CAA43480.1| mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase [Mus musculus]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +IP  + + SL+++GQLEIVTGGWVM DEA  HY+++I QL  G QWL  N+GVKPR
Sbjct: 226 DIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLEKNLGVKPR 282

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148706344|gb|EDL38291.1| mannosidase 2, alpha 1 [Mus musculus]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +IP  + + SL+++GQLEIVTGGWVM DEA  HY+++I QL  G QWL  N+GVKPR
Sbjct: 255 DIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLEKNLGVKPR 311

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351701125|gb|EHB04044.1| Alpha-mannosidase 2 [Heterocephalus glaber]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +IP  + + SL+++GQLEIVTGGWVM DEA  HY+++I QL  G QWL  N+GVKPR
Sbjct: 227 DIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLEKNLGVKPR 283

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410904367|ref|XP_003965663.1| PREDICTED: LOW QUALITY PROTEIN: alpha-mannosidase 2-like [Takifugu rubripes]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 3   WSGEIPNHKP--IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK 60
           W  +I   K   + SL+K+GQLE+VTGGWVMTDEANSHY++M+ QL  G QWL  ++GVK
Sbjct: 207 WWNDIDEQKRDLVKSLLKAGQLEMVTGGWVMTDEANSHYFAMLDQLMEGHQWLQRHLGVK 266

Query: 61  PR 62
           PR
Sbjct: 267 PR 268

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|189339241|ref|NP_037111.2| alpha-mannosidase 2 [Rattus norvegicus] gi|149037394|gb|EDL91825.1| rCG55602 [Rattus norvegicus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 8   PNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           P  + + SL+++GQLEIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKPR
Sbjct: 228 PKKEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIEGHQWLEKNLGVKPR 282

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355691512|gb|EHH26697.1| Alpha-mannosidase 2 [Macaca mulatta]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 6   EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +I     + SL+++GQLEIVTGGWVM DEA +HY+++I QL  G QWL  NIGVKPR
Sbjct: 227 DIQKKDAVKSLIENGQLEIVTGGWVMPDEATAHYFALIDQLIEGHQWLENNIGVKPR 283

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
RGD|3038	489	Man2a1 "mannosidase, alpha, cl	0.733	0.112	0.6	4.8e-14
MGI|MGI:104669	1150	Man2a1 "mannosidase 2, alpha 1	0.76	0.049	0.596	8.9e-14
UNIPROTKB|G3V7Y9	1148	Man2a1 "Alpha-mannosidase 2" [	0.733	0.047	0.6	1.8e-13
UNIPROTKB|Q16706	1144	MAN2A1 "Alpha-mannosidase 2" [	0.76	0.049	0.596	3e-13
UNIPROTKB|H0YKQ2	197	MAN2A2 "Alpha-mannosidase 2x"	0.8	0.304	0.524	3.4e-13
ZFIN|ZDB-GENE-060526-31	1100	man2a1 "mannosidase, alpha, cl	0.8	0.054	0.548	6e-13
UNIPROTKB|F1NKR1	1110	MAN2A1 "Uncharacterized protei	0.8	0.054	0.557	6e-13
UNIPROTKB|F1NXU9	929	F1NXU9 "Uncharacterized protei	0.626	0.050	0.723	7.8e-13
UNIPROTKB|J9NRT0	1096	MAN2A1 "Uncharacterized protei	0.8	0.054	0.540	1.6e-12
UNIPROTKB|F1P9C4	1107	MAN2A1 "Uncharacterized protei	0.8	0.054	0.540	1.6e-12

RGD|3038 Man2a1 "mannosidase, alpha, class 2A, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query:     8 PNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
             P  + + SL+++GQLEIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKPR
Sbjct:   195 PKKEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIEGHQWLEKNLGVKPR 249

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0006491 "N-glycan processing" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0007033 "vacuole organization" evidence=ISO

GO:0007585 "respiratory gaseous exchange" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=ISO

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=ISO

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=ISO

MGI|MGI:104669 Man2a1 "mannosidase 2, alpha 1" [Mus musculus (taxid:10090)]

 Score = 192 (72.6 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query:     6 EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
             +IP  + + SL+++GQLEIVTGGWVM DEA  HY+++I QL  G QWL  N+GVKPR
Sbjct:   226 DIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLEKNLGVKPR 282

GO:0000139 "Golgi membrane" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IGI

GO:0001889 "liver development" evidence=IGI

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IGI

GO:0007005 "mitochondrion organization" evidence=IGI

GO:0007033 "vacuole organization" evidence=IGI

GO:0007585 "respiratory gaseous exchange" evidence=IGI

GO:0008152 "metabolic process" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IGI

UNIPROTKB|G3V7Y9 Man2a1 "Alpha-mannosidase 2" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query:     8 PNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
             P  + + SL+++GQLEIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKPR
Sbjct:   228 PKKEAVKSLLQNGQLEIVTGGWVMADEATTHYFALIDQLIEGHQWLEKNLGVKPR 282

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007033 "vacuole organization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

UNIPROTKB|Q16706 MAN2A1 "Alpha-mannosidase 2" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query:     6 EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
             +I     + SL+++GQLEIVTGGWVM DEA  HY+++I QL  G QWL  NIGVKPR
Sbjct:   227 DIQKKDAVKSLIENGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLENNIGVKPR 283

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007033 "vacuole organization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|H0YKQ2 MAN2A2 "Alpha-mannosidase 2x" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query:     3 WSG-EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
             W    +     +  LV +GQLEI TGGWVM DEANSHY+++I QL  G QWL  N+G  P
Sbjct:   102 WDNINVQKRAAVRRLVGNGQLEIATGGWVMPDEANSHYFALIDQLIEGHQWLERNLGATP 161

Query:    62 R 62
             R
Sbjct:   162 R 162

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

ZFIN|ZDB-GENE-060526-31 man2a1 "mannosidase, alpha, class 2A, member 1" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 34/62 (54%), Positives = 43/62 (69%)

Query:     3 WSGEIPNHKP--IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK 60
             W   I   K   +  LV++GQLE+ TGGWVM DEAN+HY++MI QL  G QWL  N+GVK
Sbjct:   220 WWDSIDGQKQDAVRRLVENGQLEVATGGWVMPDEANAHYFAMIDQLVEGHQWLERNLGVK 279

Query:    61 PR 62
             P+
Sbjct:   280 PK 281

GO:0003824 "catalytic activity" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0015923 "mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NKR1 MAN2A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 34/61 (55%), Positives = 42/61 (68%)

Query:     3 WSGEIPNHKPIVS-LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
             W G     +  V  L+K GQ EIVTGGWVM DEA++HY+S+I QL  G QWL  N+GVKP
Sbjct:   182 WDGIDSQRRDAVKRLIKDGQFEIVTGGWVMPDEASAHYFSLIDQLIEGHQWLERNLGVKP 241

Query:    62 R 62
             +
Sbjct:   242 K 242

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0007033 "vacuole organization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|F1NXU9 F1NXU9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 7.8e-13, P = 7.8e-13
 Identities = 34/47 (72%), Positives = 38/47 (80%)

Query:    16 LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
             LV +GQLE+VTGGWVM DEANSHY++MI QL  G QWL  NIGV PR
Sbjct:   118 LVGNGQLEMVTGGWVMPDEANSHYFAMIDQLIEGHQWLEKNIGVTPR 164

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

UNIPROTKB|J9NRT0 MAN2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query:     3 WSG-EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
             W   + P    + SL+++GQ EIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKP
Sbjct:   175 WDSIDKPKKDAVKSLLQNGQFEIVTGGWVMPDEAAAHYFAIIDQLIEGHQWLEKNLGVKP 234

Query:    62 R 62
             R
Sbjct:   235 R 235

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|F1P9C4 MAN2A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query:     3 WSG-EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
             W   + P    + SL+++GQ EIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKP
Sbjct:   186 WDSIDKPKKDAVKSLLQNGQFEIVTGGWVMPDEAAAHYFAIIDQLIEGHQWLEKNLGVKP 245

Query:    62 R 62
             R
Sbjct:   246 R 246

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27046	MA2A1_MOUSE	3, ., 2, ., 1, ., 1, 1, 4	0.5964	0.76	0.0495	yes	N/A
P34098	MANA_DICDI	3, ., 2, ., 1, ., 2, 4	0.5106	0.6266	0.0465	yes	N/A
Q16706	MA2A1_HUMAN	3, ., 2, ., 1, ., 1, 1, 4	0.5964	0.76	0.0498	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
cd10809	340	cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal	2e-27
PLN02701	1050	PLN02701, PLN02701, alpha-mannosidase	2e-21
cd11666	344	cd11666, GH38N_Man2A1, N-terminal catalytic domain	7e-21
pfam01074	269	pfam01074, Glyco_hydro_38, Glycosyl hydrolases fam	8e-20
cd11667	344	cd11667, GH38N_Man2A2, N-terminal catalytic domain	9e-19
cd00451	258	cd00451, GH38N_AMII_euk, N-terminal catalytic doma	3e-18
cd10810	278	cd10810, GH38N_AMII_LAM_like, N-terminal catalytic	5e-17
cd10786	251	cd10786, GH38N_AMII_like, N-terminal catalytic dom	4e-10
cd10811	326	cd10811, GH38N_AMII_Epman_like, N-terminal catalyt	1e-08
cd10785	203	cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain	3e-06
cd10789	252	cd10789, GH38N_AMII_ER_cytosolic, N-terminal catal	1e-04

>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score =  100 bits (251), Expect = 2e-27
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 3   WSGEIPNHKPIV-SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           W    P+ K  V  LVK+GQLEIVTGGWVMTDEANSHY++MI QL  G QWL  N+GVKP
Sbjct: 59  WDDASPDKKEAVKKLVKNGQLEIVTGGWVMTDEANSHYFAMIDQLIEGHQWLKENLGVKP 118

Query: 62  R 62
           +
Sbjct: 119 K 119

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells. Length = 340

>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase

 Score = 85.2 bits (211), Expect = 2e-21
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 3   WSGEIPNHKP-IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           W    P+ K     LVK+GQLEIV GGWVM DEANSHY+++I+Q+T G  WL   IGV P
Sbjct: 97  WRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAP 156

Query: 62  R 62
           +
Sbjct: 157 K 157

Length = 1050

>gnl|CDD|212131 cd11666, GH38N_Man2A1, N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 83.1 bits (205), Expect = 7e-21
 Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 3   WSG-EIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           W   +      +  L+++GQLEIVTGGWVM DEA +HY+++I QL  G QWL  N+GVKP
Sbjct: 59  WDIIDGQKKDAVKRLIENGQLEIVTGGWVMPDEATAHYFALIDQLIEGHQWLERNLGVKP 118

Query: 62  R 62
           +
Sbjct: 119 K 119

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal of both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 344

>gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain

 Score = 79.2 bits (196), Expect = 8e-20
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 16  LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           LV  G+LE V GGWV  DE      S+I+QL +GQ++     GV+PR
Sbjct: 69  LVAEGRLEPVGGGWVEPDENLPSGESLIRQLLYGQRFFKEEFGVRPR 115

Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Length = 269

>gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 77.3 bits (190), Expect = 9e-19
 Identities = 33/47 (70%), Positives = 37/47 (78%)

Query: 16  LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           LV +GQLE+ TGGWVM DEANSHY++MI QL  G QWL  NIGV PR
Sbjct: 73  LVGNGQLEMATGGWVMPDEANSHYFAMIDQLIEGHQWLEKNIGVTPR 119

This subfamily is represented by human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII (found in another subfamily), and as an isoenzyme of GMII. It is thought to also function in the N-glycosylation pathway. MX specifically hydrolyzes the same oligosaccharide substrate as does MII. It specifically removes two mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine). Length = 344

>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38)

 Score = 75.0 bits (185), Expect = 3e-18
 Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 3   WSGEIPNHKPIV-SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           W  +  + K     LVK+GQLE V GGWVM DEA + Y S+I Q+T G Q+L    GV+P
Sbjct: 58  WEDQGNDTKQQFKKLVKNGQLEFVGGGWVMNDEACTTYESIIDQMTEGHQFLKDTFGVRP 117

Query: 62  RY 63
           R 
Sbjct: 118 RV 119

The family corresponds to a group of eukaryotic class II alpha-mannosidases (AlphaMII), which contain Golgi alpha-mannosidases II (GMII), the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), the noval core-specific lysosomal alpha 1,6-mannosidases (Epman, MAN2B2), and similar proteins. GMII catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. LAM is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. Different from LAM, Epman can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 258

>gnl|CDD|212121 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 71.9 bits (177), Expect = 5e-17
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 16  LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGV--KPR 62
           LVK+GQLE + GGW M DEA +HY  +I Q+T G Q+L    G   +PR
Sbjct: 80  LVKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTFGECARPR 128

The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base. Length = 278

>gnl|CDD|212098 cd10786, GH38N_AMII_like, N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 52.8 bits (127), Expect = 4e-10
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 8   PNHKPIV-SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           P+ K  +   V+SG+LEI  GG+VM D       S+++Q+  G++WL   +G +P 
Sbjct: 61  PDLKAKLKQAVRSGRLEIAGGGYVMPDTNLPDGESLVRQILLGKRWLKEFLGARPP 116

Alpha-mannosidases (EC 3.2.1.24) are extensively found in eukaryotes and play important roles in the processing of newly formed N-glycans and in degradation of mature glycoproteins. A deficiency of this enzyme causes the lysosomal storage disease alpha-mannosidosis. Many bacterial and archaeal species also possess putative alpha-mannosidases, but their activity and specificity is largely unknown. Based on different functional characteristics and sequence homology, alpha-mannosidases have been organized into two classes (class I, belonging to glycoside hydrolase family 47, and class II, belonging to glycoside hydrolase family 38). Members of this family corresponds to class II alpha-mannosidases (alphaMII), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 251

>gnl|CDD|212122 cd10811, GH38N_AMII_Epman_like, N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 16  LVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY 63
           L+  G+LE V GG VM DEA +     I QLT G  +L    GV+PR+
Sbjct: 73  LLSEGRLEFVIGGQVMHDEAVTELDDQILQLTEGHGFLYETFGVRPRF 120

The subfamily is represented by a novel human core-specific lysosomal alpha 1,6-mannosidase (Epman, Man2B2) and similar proteins. Although it was previously named as epididymal alpha-mannosidase, Epman has a broadly distributed transcript expression profile. Different from the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), Epman is not associated with genetic alpha-mannosidosis that is caused by the absence of LAM. Furthermore, Epman has unique substrate specificity. It can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. In contrast, the major LAM can cleave all of the alpha-linked mannose residues from high mannose oligosaccharides except the core alpha 1,6-linked mannose residue. Moreover, it is suggested that the catalytic activity of Epman is dependent on prior action by di-N-acetyl-chitobiase (chitobiase), which indicates there is a functional cooperation between these two enzymes for the full and efficient catabolism of mammalian lysosomal N-glycan core structures. Epman has an acidic pH optimum. It is strongly stimulated by cobalt or zinc ions and strongly inhibited by furanose analogues swainsonine (SW) and 1,4-dideoxy-1,4-imino-d-mannitol (DIM). Length = 326

>gnl|CDD|212097 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 14  VSLVKSGQLEIVTGGWVMTD--EANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
            S+ K+GQLEI T G    D  EA SH  ++  Q+T G  WL  ++GV PR
Sbjct: 67  KSIQKNGQLEIGTHGATHPDESEAQSHPENVYAQITEGITWLEKHMGVTPR 117

The superfamily possesses strong sequence similarities across a wide range of all three kingdoms of life. It mainly includes four families, glycoside hydrolases family 38 (GH38), heat stable retaining glycoside hydrolases family 57 (GH57), lactam utilization protein LamB/YcsF family, and YdjC-family. The GH38 family corresponds to class II alpha-mannosidases (alphaMII, EC 3.2.1.24), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides by employing a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. GH57 is a purely prokaryotic family with the majority of thermostable enzymes from extremophiles (many of them are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57 cleaves alpha-glycosidic bond by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation. Although the exact molecular function of LamB/YcsF family and YdjC-family remains unclear, they show high sequence and structure homology to the members of GH38 and GH57. Their catalytic domains adopt a similar parallel 7-stranded beta/alpha barrel, which is remotely related to catalytic NodB homology domain of the carbohydrate esterase 4 superfamily. Length = 203

>gnl|CDD|212101 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38)

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 12/58 (20%)

Query: 13  IVSLVKSGQLEIVTGGWVMTD------EANSHYYSMIQQLTHGQQWLLTNIGVKPRYL 64
           I   VK G+ E V G WV  D      E      S+++Q  +GQ++     GV+ R L
Sbjct: 66  IKERVKEGRWEPVGGMWVEPDCNLPSGE------SLVRQFLYGQRYFREEFGVESRIL 117

The subfamily is represented by Saccharomyces cerevisiae vacuolar alpha-mannosidase Ams1, rat ER/cytosolic alpha-mannosidase Man2C1, and similar proteins. Members in this family share high sequence similarity. None of them have any classical signal sequence or membrane spanning domains, which are typical of sorting or targeting signals. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 utilizes both the cytoplasm to vacuole targeting (Cvt, nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Man2C1is involved in oligosaccharide catabolism in both the ER and cytosol. It can catalyze the cobalt-dependent cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked mannose residues. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl-enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
KOG1959|consensus	996		100.0
PLN02701	1050	alpha-mannosidase	99.97
KOG1958|consensus	1129		99.96
PF01074	275	Glyco_hydro_38: Glycosyl hydrolases family 38 N-te	99.94
PRK09819	875	alpha-mannosidase; Provisional	99.88
KOG4342|consensus	1078		99.69
COG0383	943	AMS1 Alpha-mannosidase [Carbohydrate transport and	99.13
PF03065	360	Glyco_hydro_57: Glycosyl hydrolase family 57; Inte	98.67
PF01522	123	Polysacc_deac_1: Polysaccharide deacetylase; Inter	97.32
TIGR02764	191	spore_ybaN_pdaB polysaccharide deacetylase family	96.63
TIGR02873	268	spore_ylxY probable sporulation protein, polysacch	96.36
TIGR02884	224	spore_pdaA delta-lactam-biosynthetic de-N-acetylas	95.71
COG1449	615	Alpha-amylase/alpha-mannosidase [Carbohydrate tran	95.05
TIGR03006	265	pepcterm_polyde polysaccharide deactylase family p	94.62
COG1543	504	Uncharacterized conserved protein [Function unknow	94.13
TIGR03212	297	uraD_N-term-dom putative urate catabolism protein.	93.77
PF08672	60	APC2: Anaphase promoting complex (APC) subunit 2;	88.69
PRK15394	296	4-deoxy-4-formamido-L-arabinose-phosphoundecapreno	85.4
PRK14581	672	hmsF outer membrane N-deacetylase; Provisional	85.29
COG0383	943	AMS1 Alpha-mannosidase [Carbohydrate transport and	82.93

>KOG1959|consensus

Probab=100.00  E-value=1.1e-35  Score=237.46  Aligned_cols=74  Identities=34%  Similarity=0.552  Sum_probs=72.8

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhC--CCCCceeecCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIG--VKPRYLHNNSRTISSP   74 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg--~~P~~~W~~D~Fg~s~   74 (75)
                      |||++|+++.|.+ |+||++|||||+||||||||||++||.|+|||+|.||+||+++||  .+|++||+|||||||.
T Consensus       100 rWW~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSr  176 (996)
T KOG1959|consen  100 RWWNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSR  176 (996)
T ss_pred             HHHHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcch
Confidence            6999999999999 999999999999999999999999999999999999999999999  9999999999999995

>PLN02701 alpha-mannosidase

Probab=99.97  E-value=3.4e-33  Score=227.59  Aligned_cols=74  Identities=47%  Similarity=0.784  Sum_probs=72.7

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      +||++++|+++++ |+||++||||||||||||||||+++|+++|+||++||+||+++||+.|++||+|||||||+
T Consensus        95 ~Ww~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~  169 (1050)
T PLN02701         95 RWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSS  169 (1050)
T ss_pred             HHHHhcCHHHHHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCH
Confidence            5999999999999 9999999999999999999999999999999999999999999999999999999999996

>KOG1958|consensus

Probab=99.96  E-value=5.2e-31  Score=211.84  Aligned_cols=75  Identities=52%  Similarity=0.797  Sum_probs=73.5

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSPH   75 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~~   75 (75)
                      +||++++++.++. |+||++||||||+|||||||||++||.++|+|+++||+||+++.|++|+++|+||||||||.
T Consensus       218 ~ww~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~igv~P~s~WaiDPFG~S~T  293 (1129)
T KOG1958|consen  218 RWWDDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIGVTPQSGWAIDPFGYSST  293 (1129)
T ss_pred             HhhhhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCCCCCCcccccCCCCCCcc
Confidence            6999999999999 99999999999999999999999999999999999999999999999999999999999983

>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3

Probab=99.94  E-value=2.5e-27  Score=167.00  Aligned_cols=72  Identities=31%  Similarity=0.417  Sum_probs=61.5

Q ss_pred             CCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          3 WSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         3 w~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      |.+..|+.+++ |+||++||||||||+|||+|++++++|++|+||+.|++|++++||++|+++|++|+||||+
T Consensus        55 ~~~~~p~~~~~~~~lv~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg~~~~~~~~~D~FG~~~  127 (275)
T PF01074_consen   55 YLEDAPEEFKRIKKLVKEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSA  127 (275)
T ss_dssp             HHHCSGHHHHHHHHHHHTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHTG--SEEEESSSSSB-T
T ss_pred             HHHhCCHHHHHHHHHHHhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcCCCCCeEEeCCCCCCch
Confidence            33446777777 9999999999999999999999999999999999999999999999999999999999997

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....

>PRK09819 alpha-mannosidase; Provisional

Probab=99.88  E-value=3e-23  Score=166.30  Aligned_cols=68  Identities=22%  Similarity=0.206  Sum_probs=63.0

Q ss_pred             CCCCCChhhh-HHHHhcCceEEEccee-eeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          4 SGEIPNHKPI-VSLVKSGQLEIVTGGW-VMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         4 ~~~~~~~k~~-k~lV~~GqlE~v~GgW-v~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      .+..|+.+++ |+||++|||  +.||| ||+|++++++||+||||+.|++|+ ++||..|++||+|||||||+
T Consensus        62 ~~~~Pe~~~~ik~lV~~Grl--~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~  131 (875)
T PRK09819         62 LAVKPEDKERVKKLVQAGKL--IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSG  131 (875)
T ss_pred             HHhChHHHHHHHHHHHcCCE--eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcH
Confidence            3678999999 999999999  34777 899999999999999999999999 79999999999999999996

>KOG4342|consensus

Probab=99.69  E-value=2e-17  Score=131.63  Aligned_cols=74  Identities=20%  Similarity=0.194  Sum_probs=71.8

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      +|..+.+|+...+ +..+..||+-.|||.||++|.+.|++|++++|+..|+.|+.++||++++.-|++|+||||.
T Consensus       334 ~WlkedhP~~f~kl~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSs  408 (1078)
T KOG4342|consen  334 EWLKEDHPGLFSKLQEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSS  408 (1078)
T ss_pred             HHHhhhChhHHHHHHHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhhhhhcceeccccccccc
Confidence            4888999999999 9999999999999999999999999999999999999999999999999999999999995

>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1e-11  Score=101.61  Aligned_cols=71  Identities=24%  Similarity=0.244  Sum_probs=63.5

Q ss_pred             CCCCCCChhhhHHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          3 WSGEIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         3 w~~~~~~~k~~k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      .....|..... ++|+.+++++++|+||++|.+++++|++++|+..|++|+.+.|+...|+.|.+|+||.|.
T Consensus       253 l~~d~p~l~~~-~~v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~  323 (943)
T COG0383         253 LKPDVPFLFSR-PAVEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSG  323 (943)
T ss_pred             hcCccHHHhhc-ccccccceEEeecccccccCCccccchhhhhhhccceeeecccCccceeEeehhccccch
Confidence            33444444333 899999999999999999999999999999999999999999999999999999999985

>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3

Probab=98.67  E-value=2.9e-08  Score=72.97  Aligned_cols=61  Identities=16%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             CChhhh-HHHHhcCceEEEcceeeeeccCCCCH-HHHHHHHHHHHHHHHhhhCCCCCceeecC
Q psy11172          8 PNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHY-YSMIQQLTHGQQWLLTNIGVKPRYLHNNS   68 (75)
Q Consensus         8 ~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~-~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D   68 (75)
                      .+.-+. |+|+++|++|++++++..+-..+..- +++..||..|.+.+++.||++|++.|.+.
T Consensus       110 ~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE  172 (360)
T PF03065_consen  110 GDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPE  172 (360)
T ss_dssp             T-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GG
T ss_pred             hhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECcc
Confidence            344567 99999999999999999999999999 99999999999999999999999999874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.

>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase

Probab=97.32  E-value=0.00045  Score=42.44  Aligned_cols=52  Identities=17%  Similarity=0.234  Sum_probs=44.9

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      .+. +.++++| .||.+.||..++....+.+++.++|....+.|++.+|..|+.
T Consensus        47 ~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~   99 (123)
T PF01522_consen   47 PDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSREILEEITGRPPKG   99 (123)
T ss_dssp             HHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHHHHHHHHHSSEESE
T ss_pred             cccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence            355 9999999 999999999999999999999999999999999999995554

This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....

>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB

Probab=96.63  E-value=0.012  Score=39.39  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=50.3

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS   72 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~   72 (75)
                      .+. ++++++|. ||.+.+|..++....+.+.+..+|..+.+.|++..|..|+.  -.-|+|.
T Consensus        48 ~~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~--fr~P~G~  107 (191)
T TIGR02764        48 PELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTGKKPTL--FRPPSGA  107 (191)
T ss_pred             HHHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCCE--EECCCcC
Confidence            356 99999995 99999999999998999999999999999999999987763  3445553

This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.

>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family

Probab=96.36  E-value=0.017  Score=41.62  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=52.3

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS   72 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~   72 (75)
                      .+. |+++++| .||.+.+|..++...-+.+.+.++|....+.|++..|..|+  |-.-|+|.
T Consensus       127 p~l~k~i~~~G-heIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i~~~~G~~p~--~fRpP~G~  186 (268)
T TIGR02873       127 SQLAKMIVEQG-HEIGNHAYNHPDMATLSKEEIYDQINQTNEIIEATIGVTPK--WFAPPSGS  186 (268)
T ss_pred             HHHHHHHHHCC-CEEEecCCcCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCC--EEECCCCC
Confidence            456 8999999 59999999999999999999999999999999999999887  56667775

Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.

>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase

Probab=95.71  E-value=0.054  Score=37.64  Aligned_cols=59  Identities=10%  Similarity=-0.036  Sum_probs=50.5

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCC-CCceeecCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK-PRYLHNNSRTIS   72 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~-P~~~W~~D~Fg~   72 (75)
                      .+. ++++++| .||.+.+|..++....+.+.+.++|....+.|.+..|.. |+  |---|+|.
T Consensus        79 p~~ir~i~~~G-heIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~~~G~~~~~--~fR~P~G~  139 (224)
T TIGR02884        79 PDLIKRMVDEG-HIVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKKVTGQKEMK--YFRPPRGV  139 (224)
T ss_pred             HHHHHHHHHcC-CEeeecCccCcCcccCCHHHHHHHHHHHHHHHHHHhCCCCCC--EEeCCCCC
Confidence            456 9999999 599999999999999999999999999999999999977 43  45556664

Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.

>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]

Probab=95.05  E-value=0.041  Score=44.10  Aligned_cols=60  Identities=17%  Similarity=0.155  Sum_probs=52.6

Q ss_pred             CChhhh-HHHHhcCceEEEcceeeeeccCCCCHH----HHHHHHHHHHHHHHhhhCCCCCceeec
Q psy11172          8 PNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYY----SMIQQLTHGQQWLLTNIGVKPRYLHNN   67 (75)
Q Consensus         8 ~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~----~~i~Q~~~G~~fl~~~fg~~P~~~W~~   67 (75)
                      +..-+. |+++++|+.|++.--+..+=.++..-.    ++++|+..+....++.||+.|++.|.+
T Consensus       179 ~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~~t  243 (615)
T COG1449         179 PRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFWNT  243 (615)
T ss_pred             hhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCccccCh
Confidence            345567 899999999999999998877666655    999999999999999999999999975

>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily

Probab=94.62  E-value=0.19  Score=36.26  Aligned_cols=55  Identities=13%  Similarity=0.118  Sum_probs=48.0

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeec
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNN   67 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~   67 (75)
                      .+. ++++++| .||.+.||...+....+-+.+.++|....+.|++..|..|+ +|..
T Consensus        57 p~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~s~~~Le~itG~~~~-gfRa  112 (265)
T TIGR03006        57 PELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRRSKALLEDLSGQPVR-GYRA  112 (265)
T ss_pred             HHHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHHHHHHHHHHhCCCce-EEEC
Confidence            456 9999999 59999999999888888899999999999999999998876 4543

Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.

>COG1543 Uncharacterized conserved protein [Function unknown]

Probab=94.13  E-value=0.05  Score=42.91  Aligned_cols=61  Identities=18%  Similarity=0.099  Sum_probs=50.3

Q ss_pred             CCChhhh-HHHHhcCceEEEcceeeeeccCCCCH-HHHHHHHHHHHHHHHhhhCCCCCceeec
Q psy11172          7 IPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHY-YSMIQQLTHGQQWLLTNIGVKPRYLHNN   67 (75)
Q Consensus         7 ~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~-~~~i~Q~~~G~~fl~~~fg~~P~~~W~~   67 (75)
                      +.+.-.. |++.++|.+||++.+-+.-=...--. +++=.|+..|.+=-.++||..|+.-|.+
T Consensus       122 d~~ll~~f~~~~~~g~ieilts~athg~lPll~~peAi~AQi~~g~~~ye~~fg~~P~GiWlP  184 (504)
T COG1543         122 DGNLLEAFKELQRSGGIEILTSAATHGYLPLLGGPEAIEAQILTGIELYEEHFGLAPKGIWLP  184 (504)
T ss_pred             hHHHHHHHHHHHHcCCceeeeehhhheehhhcCCchhhHHHHHHHHHHHHHHhCCCCCceech
Confidence            3445667 99999999999988776654444444 7888999999999999999999999987

>TIGR03212 uraD_N-term-dom putative urate catabolism protein

Probab=93.77  E-value=0.2  Score=36.70  Aligned_cols=54  Identities=13%  Similarity=0.118  Sum_probs=47.3

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceee
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHN   66 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~   66 (75)
                      -++ ++++++| .||.+.||...+...-+.+...++|....+-|++..|.+|. ||.
T Consensus       106 P~~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s~~~i~~~tG~~P~-G~~  160 (297)
T TIGR03212       106 PEAVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEAIRLHTEVTGERPL-GWY  160 (297)
T ss_pred             HHHHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHHHHHHHHHhCCCCc-eEE
Confidence            456 8899999 99999999998888888899999999999999999998765 454

This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.

>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase

Probab=88.69  E-value=0.28  Score=28.29  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=15.0

Q ss_pred             hhhh-HHHHhcCceEEEccee
Q psy11172         10 HKPI-VSLVKSGQLEIVTGGW   29 (75)
Q Consensus        10 ~k~~-k~lV~~GqlE~v~GgW   29 (75)
                      .++- .++|++|++|++||-|
T Consensus        38 L~~fL~~lv~e~~L~~~~G~Y   58 (60)
T PF08672_consen   38 LQEFLDRLVEEGKLECSGGSY   58 (60)
T ss_dssp             HHHHHHHHHHTTSEE--TTEE
T ss_pred             HHHHHHHHHHCCcEEecCCEE
Confidence            4566 8999999999998876

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.

>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional

Probab=85.40  E-value=2.2  Score=31.38  Aligned_cols=51  Identities=20%  Similarity=0.176  Sum_probs=42.3

Q ss_pred             hhh-HHHHhcCceEEEcceeeeec----cCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTD----EANSHYYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~D----ea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      -++ ++.+++  -||.+.||....    ...-+-+.+.++|..+.+-|++..|.+|+.
T Consensus        91 P~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~g  146 (296)
T PRK15394         91 ADIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVTC  146 (296)
T ss_pred             HHHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence            455 777777  999999999873    455677889999999999999999988753

>PRK14581 hmsF outer membrane N-deacetylase; Provisional

Probab=85.29  E-value=2.5  Score=34.63  Aligned_cols=59  Identities=19%  Similarity=0.154  Sum_probs=44.4

Q ss_pred             hh-HHHHhcCceEEEcceeeeeccC--------------------CCCHH-------HHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         12 PI-VSLVKSGQLEIVTGGWVMTDEA--------------------NSHYY-------SMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        12 ~~-k~lV~~GqlE~v~GgWv~~Dea--------------------~~~~~-------~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      +. |+++++|-+||.+.++..+...                    +..|+       .+.+.+....+.|++..|..|+.
T Consensus       168 ~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~~  247 (672)
T PRK14581        168 KQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPRV  247 (672)
T ss_pred             HHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence            35 9999999999999999887421                    11233       25567888999999999998885


Q ss_pred             eeecCCCCC
Q psy11172         64 LHNNSRTIS   72 (75)
Q Consensus        64 ~W~~D~Fg~   72 (75)
                        -+=|||.
T Consensus       248 --FayPyG~  254 (672)
T PRK14581        248 --WVWPYGA  254 (672)
T ss_pred             --EEcCCCC
Confidence              4466775

>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]

Probab=82.93  E-value=0.24  Score=41.57  Aligned_cols=65  Identities=18%  Similarity=-0.059  Sum_probs=58.4

Q ss_pred             CCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCC
Q psy11172          7 IPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISS   73 (75)
Q Consensus         7 ~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s   73 (75)
                      .|+.+++ +.+++.|++.+.-. +...|.+.++.++.++.+..|..+..+.. ..-+.|+.+|+||+.
T Consensus        65 ~~~~~~~~~~~~~~~~l~ig~~-~~~~~~~~~~~e~~~rn~l~~~~~~~~~~-~~~~~g~~~d~~g~~  130 (943)
T COG0383          65 PPELKDRVKLLIASGKLGIGPW-YTQTDTFILSGESNVRNLLIGEFDAERFG-KAMKLGYFPDTFGNL  130 (943)
T ss_pred             cccchhhHHHHHhhcCccccCC-CCeeEEEEeccccceeeeecchHHHHHhh-hhhccccccccchhh
Confidence            4566678 99999999998877 99999999999999999999999988877 889999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
1ps3_A	1045	Golgi Alpha-mannosidase Ii In Complex With Kifunens		5e-11
3dx3_A	1045	Golgi Alpha-Mannosidase Ii In Complex With Mannosta		5e-11
1qwu_A	1045	Golgi Alpha-Mannosidase Ii D341n Mutant Complex Wit		5e-11
3cv5_A	1045	Golgi Mannosidase Ii D204a Catalytic Nucleophile Mu		5e-11
1qwn_A	1045	Golgi Alpha-Mannosidase Ii Covalent Intermediate Co		5e-11
1hxk_A	1015	Golgi Alpha-Mannosidase Ii In Complex With Deoxyman		5e-11
1hty_A	1015	Golgi Alpha-Mannosidase Ii Length = 1015		5e-10
1o7d_A	298	The Structure Of The Bovine Lysosomal A-Mannosidase		5e-07

>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine Length = 1045

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 15  SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P
Sbjct: 151 SIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTP 197

>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin Analog (1r,2r, 3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol Length = 1045

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 15  SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P
Sbjct: 151 SIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTP 197

>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With 5-F-Guloside Length = 1045

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 15  SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P
Sbjct: 151 SIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTP 197

>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant Complex With 3alpha,6alpha-Mannopentaose Length = 1045

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 15  SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P
Sbjct: 151 SIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTP 197

>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex With 5- Fluoro-Gulosyl-Fluoride Length = 1045

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 15  SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P
Sbjct: 151 SIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTP 197

>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin Length = 1015

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 15  SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P
Sbjct: 121 SIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTP 167

>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii Length = 1015

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 34/47 (72%)
Query: 15  SLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61
           S+VK+GQLE VTGGWV  DEANSH+ +++ QLT GQ WL     V P
Sbjct: 121 SIVKNGQLEFVTGGWVXPDEANSHWRNVLLQLTEGQTWLKQFXNVTP 167

>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 298

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 10  HKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
            K +  LV+ G+LE   GGWVM DEA +HY ++I Q+T G ++L    G   R
Sbjct: 87  QKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGR 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
3bvx_A	1045	Alpha-mannosidase 2; family 38 glycoysl hydrolase,	2e-14
1o7d_A	298	Lysosomal alpha-mannosidase; hydrolase, glycosyl h	1e-12
2wyh_A	923	Alpha-mannosidase; hydrolase, glycosidase, glycosi	1e-09
3lvt_A	899	Glycosyl hydrolase, family 38; PSI, MCSG, structur	1e-07

>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Length = 1045

 Score = 64.9 bits (157), Expect = 2e-14
 Identities = 29/52 (55%), Positives = 37/52 (71%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYL 64
           + S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P   
Sbjct: 149 MKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTAS 200

>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Length = 298

 Score = 59.6 bits (144), Expect = 1e-12
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 11  KPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           K +  LV+ G+LE   GGWVM DEA +HY ++I Q+T G ++L    G   R
Sbjct: 88  KIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGR 139

>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Length = 923

 Score = 51.4 bits (122), Expect = 1e-09
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           I   + SG+L I    +++ D+  +   S ++ +  G++      G    
Sbjct: 94  IRQAIASGKLRI-GPFYILQDDFLTSSESNVRNMLIGKED-CDRWGASVP 141

>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Length = 899

 Score = 46.0 bits (108), Expect = 1e-07
 Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           +   V++G+L+I    +++ D+      S ++ +  G        G   +
Sbjct: 75  VKKAVQAGKLKI-GPFYILQDDFLISSESNVRNMLIG-HLESQKWGAPVQ 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
1o7d_A	298	Lysosomal alpha-mannosidase; hydrolase, glycosyl h	99.97
3bvx_A	1045	Alpha-mannosidase 2; family 38 glycoysl hydrolase,	99.96
3lvt_A	899	Glycosyl hydrolase, family 38; PSI, MCSG, structur	99.93
2wyh_A	923	Alpha-mannosidase; hydrolase, glycosidase, glycosi	99.93
1k1x_A	659	4-alpha-glucanotransferase; 2.40A {Thermococcus li	99.36
3n98_A	562	Alpha-amylase, GH57 family; GH57 family member, br	98.59
3p0b_A	540	TT1467 protein; glycoside hydrolase GH57, glycogen	98.58
2b5d_X	528	Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.	98.4
2cc0_A	195	Acetyl-xylan esterase; hydrolase, carbohydrate est	96.53
2c71_A	216	Glycoside hydrolase, family 11\:clostridium cellul	96.43
1ny1_A	240	Probable polysaccharide deacetylase PDAA; structur	96.08
2j13_A	247	Polysaccharide deacetylase; family 4, peptidoglyca	96.01
3rxz_A	300	Polysaccharide deacetylase; structural genomics, P	96.0
2iw0_A	254	Chitin deacetylase; hydrolase, chitin DE-N-acetyla	95.96
3cl6_A	308	PUUE allantoinase; URIC acid, nitrogen fixation, h	95.94
2y8u_A	230	Chitin deacetylase; hydrolase; 1.99A {Emericella n	95.89
2vyo_A	254	ECU11_0510, chitooligosaccharide deacetylase; CE4	95.6
3qbu_A	326	Putative uncharacterized protein; metallo enzyme,	95.57
3s6o_A	321	Polysaccharide deacetylase family protein; ssgcid,	95.2
2c1i_A	431	Peptidoglycan glcnac deacetylase; carbohydrate est	94.62
3vus_A	268	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas;	92.74
2w3z_A	311	Putative deacetylase; PGDA, glcnac DE-N-acetylase,	91.88
4hd5_A	360	Polysaccharide deacetylase; TIM barrel, hydrolase;	89.6
4f9d_A	618	Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas;	84.07

>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1

Probab=99.97  E-value=7.1e-32  Score=194.62  Aligned_cols=74  Identities=35%  Similarity=0.592  Sum_probs=72.0

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCC--CCceeecCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK--PRYLHNNSRTISSP   74 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~--P~~~W~~D~Fg~s~   74 (75)
                      +||++++|+.+++ |+||++||||||||||||+|||+++++|+|+||++|++||+++||+.  |+++|++|+||||+
T Consensus        77 ~w~~~~~Pe~~~~vk~lV~~Grle~vgG~wve~D~~~~~~eslirQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~  153 (298)
T 1o7d_A           77 RWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSR  153 (298)
T ss_dssp             HHHHTSCHHHHHHHHHHHHTTSEEESSCSSSCBCSSSCCHHHHHHHHHHHHHHHHHHHGGGGCCSEEEESSSSSCCH
T ss_pred             HHHHhcCHHHHHHHHHHHHCCCEEEECceeeccccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCceeEeCCCCCccH
Confidence            4899999999999 99999999999999999999999999999999999999999999997  99999999999995

>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...

Probab=99.96  E-value=5.4e-30  Score=206.70  Aligned_cols=74  Identities=45%  Similarity=0.605  Sum_probs=72.5

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      +||++++|+.+++ |+||++|||||+||||||+|||+++|+|+|+||++|++|++++||++|+++|+|||||||+
T Consensus       136 ~w~~e~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~~~W~pD~FG~s~  210 (1045)
T 3bvx_A          136 RFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSP  210 (1045)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCSSSBCT
T ss_pred             HHHHHCCHHHHHHHHHHHhCCCEEEECCccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCceEEcCCCCCccH
Confidence            4899999999999 9999999999999999999999999999999999999999999999999999999999996

>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}

Probab=99.93  E-value=5.5e-27  Score=186.90  Aligned_cols=72  Identities=13%  Similarity=0.050  Sum_probs=67.0

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      +||.+++|+.+++ |+||++|||| |||+|||+||++++++++|+||++|++|+++ ||++|+++|++|+||||+
T Consensus        62 ~~~~~~~p~~~~~vk~lv~~Gr~e-igg~~v~~D~~~~~~es~irq~~~G~~~~~~-fG~~~~~~w~~D~FG~s~  134 (899)
T 3lvt_A           62 DDYLQVRPEKKEAVKKAVQAGKLK-IGPFYILQDDFLISSESNVRNMLIGHLESQK-WGAPVQLGYFPDTFGNMG  134 (899)
T ss_dssp             HHHHHHCGGGHHHHHHHHHTTSEE-CCSBSSCCCGGGSCHHHHHHHHHHHHHHHHH-HTCCCCCEEESCCCT---
T ss_pred             HHHHhhCHHHHHHHHHHHHcCCEE-ECchhccccccCCCHHHHHHHHHHHHHHHHH-cCCCCceeEeCCCCCCch
Confidence            3788899999999 9999999999 8999999999999999999999999999999 999999999999999997

>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*

Probab=99.93  E-value=9.5e-27  Score=185.33  Aligned_cols=71  Identities=15%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEccee-eeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGW-VMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgW-v~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      +||.+++|+.+++ |+||++|||||  ||| ||+|||+++++++|+||++|++|+++ ||++|+++|++||||||+
T Consensus        81 ~~~~~~~p~~~~~vk~lV~~Grlei--G~wYv~~D~~~~~~es~irq~~~G~~~~~~-fG~~~~~~w~pD~FG~s~  153 (923)
T 2wyh_A           81 DDYLKVRPEREPEIRQAIASGKLRI--GPFYILQDDFLTSSESNVRNMLIGKEDCDR-WGASVPLGYFPDTFGNMG  153 (923)
T ss_dssp             HHHHHHCGGGHHHHHHHHHTTSEEC--CSBSSCBCSTTSCHHHHHHHHHHHHHHHHH-HTCCCSSEEESSCSSBCT
T ss_pred             HHHHHHCHHHHHHHHHHHHcCCEEE--eeeeeccccccCCHHHHHHHHHHHHHHHHH-cCCCCceeEecCCCCcch
Confidence            3788889999999 99999999997  788 99999999999999999999999999 999999999999999997

>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*

Probab=99.36  E-value=2.1e-13  Score=106.56  Aligned_cols=70  Identities=23%  Similarity=0.261  Sum_probs=64.7

Q ss_pred             CCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          3 WSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         3 w~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      +++..|+..+. |+++++||+|+++|+|++||.++++.+++++||..|.++++ +||++|++.|+++.+ +|+
T Consensus        58 l~~~~p~l~~~ik~l~~~G~vE~l~~~~~Hpi~~l~p~e~~~~QI~~g~~~~~-~FG~~P~G~WlPE~~-ys~  128 (659)
T 1k1x_A           58 IEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYAR-KLGYDAKGVWLTERV-WQP  128 (659)
T ss_dssp             HHHHCHHHHHHHHHHHHTTCEEEEBCCTTCCCGGGSCHHHHHHHHHHHHHHHH-HTTCCCCEEECGGGC-BCT
T ss_pred             HHHHCHHHHHHHHHHHHCCCEEEEccCcccccccCCCHHHHHHHHHHHHHHHH-HcCCCCCEEECcccc-cCh
Confidence            34556788888 99999999999999999999999999999999999999999 999999999999994 776

>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*

Probab=98.59  E-value=5.2e-08  Score=75.56  Aligned_cols=68  Identities=15%  Similarity=0.065  Sum_probs=60.7

Q ss_pred             CCCChhhh-HHHHhcCceEEEcceeeeeccCCCC-HHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          6 EIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSH-YYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         6 ~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~-~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      -.++.-.. |+|+++|++||+++++..+...+.. -+++..||..|.+.++++||.+|++.|++.. +++|
T Consensus       119 ~~~dii~~fr~L~~~G~iElit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~G~WlpE~-ay~~  188 (562)
T 3n98_A          119 INGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPEC-AYRP  188 (562)
T ss_dssp             TTTCHHHHHHHHHHTTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCSBEECGGG-CBCC
T ss_pred             hhhHHHHHHHHHHHCCCEEEEcCCchhhHhhcCCCHHHHHHHHHHHHHHHHHHcCCCCCEEECccc-ceeC
Confidence            34566778 9999999999999999999999886 7999999999999999999999999999875 5554

>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A

Probab=98.58  E-value=4.9e-08  Score=75.38  Aligned_cols=68  Identities=12%  Similarity=0.019  Sum_probs=60.9

Q ss_pred             CCCChhhh-HHHHhcCceEEEcceeeeeccCCC-CHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          6 EIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANS-HYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         6 ~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~-~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      -.++.-.. |+|+++|++||+++++..+-..+. +-+++..|+..|.+.++++||.+|++.|++.. +++|
T Consensus       140 ~~~dii~~fr~L~~~G~iEiit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~G~WlpE~-ay~~  209 (540)
T 3p0b_A          140 LSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPTGFWLPEM-AYRP  209 (540)
T ss_dssp             TTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCCBEECGGG-CBCC
T ss_pred             hhHHHHHHHHHHHHCCCEEEEcCCchhhHHhcCCCHHHHHHHHHHHHHHHHHHhCCCCCEEECccc-ceeC
Confidence            34566778 999999999999999999999998 58999999999999999999999999999875 5554

>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4

Probab=98.40  E-value=4e-07  Score=69.64  Aligned_cols=61  Identities=20%  Similarity=0.048  Sum_probs=55.6

Q ss_pred             CChhhh-HHHHhcCceEEEcceeeeeccCCCC--HHHHHHHHHHHHHHHHhhhCCCCCceeecC
Q psy11172          8 PNHKPI-VSLVKSGQLEIVTGGWVMTDEANSH--YYSMIQQLTHGQQWLLTNIGVKPRYLHNNS   68 (75)
Q Consensus         8 ~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~--~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D   68 (75)
                      ++.-.. |+|+++|++|++++++..+-..+..  -+++..||..|.+.++++||.+|++.|++-
T Consensus       122 ~~li~~~r~L~~~G~vEll~~~y~H~ilPLl~d~~ed~~~QI~~g~~~~~~~FG~~P~G~WlpE  185 (528)
T 2b5d_X          122 GNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPRGIWLAE  185 (528)
T ss_dssp             TCTHHHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHHHHHHHHHHHHHHHHSSCCSEEECGG
T ss_pred             HHHHHHHHHHHHCCCEEEEcCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHhCCCCCEEECch
Confidence            445567 9999999999999999999998766  799999999999999999999999999874

>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3

Probab=96.53  E-value=0.0051  Score=40.35  Aligned_cols=51  Identities=14%  Similarity=0.170  Sum_probs=47.3

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR   62 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~   62 (75)
                      .+. |+++++| .||.+.+|..++....+.+.+.++|....+.|++..|.+|+
T Consensus        46 ~~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~   97 (195)
T 2cc0_A           46 PSLVRAQVDAG-MWVANHSYTHPHMTQLGQAQMDSEISRTQQAIAGAGGGTPK   97 (195)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHTTSCCCS
T ss_pred             HHHHHHHHHCC-CEEEcCCCCccccccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            356 9999999 89999999999999999999999999999999999998876

>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A

Probab=96.43  E-value=0.0074  Score=40.44  Aligned_cols=50  Identities=22%  Similarity=0.365  Sum_probs=46.7

Q ss_pred             h-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         13 I-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        13 ~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      . |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+|+.
T Consensus        50 ~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~  100 (216)
T 2c71_A           50 IIRRMVNSG-HEIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKF  100 (216)
T ss_dssp             HHHHHHHTT-CEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCSE
T ss_pred             HHHHHHHCC-CEEeeCCcCCcchhhCCHHHHHHHHHHHHHHHHHhhCCCCeE
Confidence            6 9999999 899999999999988999999999999999999999987763

>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1

Probab=96.08  E-value=0.012  Score=39.98  Aligned_cols=51  Identities=10%  Similarity=0.047  Sum_probs=46.7

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCC-CC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK-PR   62 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~-P~   62 (75)
                      .+. |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+ |+
T Consensus        85 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~  137 (240)
T 1ny1_A           85 PQLIKRMSDEG-HIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNL  137 (240)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHCc-CChhcCCccccccccCCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            356 9999999 899999999999998999999999999999999999987 54

>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3

Probab=96.01  E-value=0.014  Score=40.08  Aligned_cols=49  Identities=18%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK   60 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~   60 (75)
                      .+. |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+
T Consensus        97 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~  146 (247)
T 2j13_A           97 KDLLLRMKDEG-HIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQK  146 (247)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHCC-CEEEecCCCCcChhhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            356 9999999 799999999999999999999999999999999999987

>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}

Probab=96.00  E-value=0.016  Score=40.29  Aligned_cols=51  Identities=24%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             hh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         12 PI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        12 ~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      +. |+++++| .||.+.||...+...-+.+.+.++|..+.+.|++.+|.+|+.
T Consensus        92 ~~v~~~~~~G-hEIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~~  143 (300)
T 3rxz_A           92 EPIRSIARAG-HEIAHHGYLHESLVGADEDTERKILTRGIEALEEVAGVHPVG  143 (300)
T ss_dssp             HHHHHHHHTT-CEEEECCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHSCCCCE
T ss_pred             HHHHHHHHcC-CEEEecCCCCcccccCCHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence            56 8999999 899999999999999999999999999999999999998864

>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3

Probab=95.96  E-value=0.0093  Score=40.94  Aligned_cols=52  Identities=12%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             hhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172         10 HKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR   62 (75)
Q Consensus        10 ~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~   62 (75)
                      ..+. |+++++| .||.+.+|..++....+.+.+.++|....+.|++..|.+|+
T Consensus        87 ~p~~lr~i~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~  139 (254)
T 2iw0_A           87 NPDTIRRMRADG-HLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRIDGFAPK  139 (254)
T ss_dssp             HHHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCEES
T ss_pred             CHHHHHHHHHCC-CEEEeeccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3467 9999999 89999999999999999999999999999999999998765

>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A

Probab=95.94  E-value=0.016  Score=40.55  Aligned_cols=54  Identities=17%  Similarity=0.162  Sum_probs=48.5

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceee
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHN   66 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~   66 (75)
                      .+. |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+|+ +|.
T Consensus       110 p~~v~~i~~~G-heIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~-g~r  164 (308)
T 3cl6_A          110 PDVIRAMVAAG-HEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERPL-GWY  164 (308)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSSCCS-EEC
T ss_pred             HHHHHHHHHcC-CEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHHHhCCCcc-eEE
Confidence            356 9999999 79999999999998899999999999999999999999887 444

>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}

Probab=95.89  E-value=0.015  Score=39.50  Aligned_cols=50  Identities=14%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             hh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172         12 PI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR   62 (75)
Q Consensus        12 ~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~   62 (75)
                      +. |+++++| .||.+.+|..++....+.+.+..+|....+.|++..|..|+
T Consensus        75 ~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~  125 (230)
T 2y8u_A           75 GLLQRMRDEG-HQVGAHTYDHVSLPSLGYDGIASQMTRLEEVIRPALGVAPA  125 (230)
T ss_dssp             HHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSSCBS
T ss_pred             HHHHHHHHCC-CEEEecccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            56 9999999 89999999999999999999999999999999999998775

>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}

Probab=95.60  E-value=0.022  Score=39.07  Aligned_cols=50  Identities=10%  Similarity=-0.012  Sum_probs=46.4

Q ss_pred             h-HHHHhcCceEEEcceeee--eccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         13 I-VSLVKSGQLEIVTGGWVM--TDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        13 ~-k~lV~~GqlE~v~GgWv~--~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      . |+++++| .||.+.+|..  ++....+.+.+.++|....+.|++..|.+|+.
T Consensus        72 ~~~~i~~~G-heIg~Ht~~H~~~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~  124 (254)
T 2vyo_A           72 LYRRAVEEG-HNVALRVDPSMDEGYQCLSQDALENNVDREIDTIDGLSGTEIRY  124 (254)
T ss_dssp             HHHHHHHTT-CEEEEECCGGGTTCGGGSCHHHHHHHHHHHHHHHHHHHTSCCCE
T ss_pred             HHHHHHhCC-CEEEecCCCCCCcCcccCCHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence            6 9999999 8999999999  88888899999999999999999999988764

>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}

Probab=95.57  E-value=0.025  Score=39.98  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=47.6

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      .+. |+++++|. ||.+.||...+...-+.+.+.++|..+.+.|++.+|.+|+.
T Consensus       103 p~~v~~i~~~Gh-EIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~~  155 (326)
T 3qbu_A          103 PEQMKMIVDAGH-EVGAHGYSHENPIAMSTKQEEDVLLKSVELIKDLTGKAPTG  155 (326)
T ss_dssp             HHHHHHHHTTTC-EEEBCCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSSCCCE
T ss_pred             HHHHHHHHHcCC-EEEeCCCCCcChhhCCHHHHHHHHHHHHHHHHHHHCCCCcE
Confidence            356 89999997 99999999999999999999999999999999999988864

>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6

Probab=95.20  E-value=0.045  Score=38.84  Aligned_cols=51  Identities=20%  Similarity=0.271  Sum_probs=47.5

Q ss_pred             hh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         12 PI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        12 ~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      ++ ++++++| .||.+.+|...+....+.+.+.++|....+.|++..|.+|+.
T Consensus       116 ~~v~~i~~~G-hEIg~H~~~H~~~~~ls~~~~~~ei~~~~~~l~~~~G~~p~g  167 (321)
T 3s6o_A          116 ELARAFVELG-HEIACHGWRWIHYQDMTPEREAEHMRLGMEAIERVTGVRPLG  167 (321)
T ss_dssp             HHHHHHHHTT-CEEEECCSSCSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCCE
T ss_pred             HHHHHHHHcC-CEEeeCCccccccccCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            56 8999999 899999999999999999999999999999999999998873

>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A

Probab=94.62  E-value=0.061  Score=40.09  Aligned_cols=59  Identities=10%  Similarity=0.102  Sum_probs=50.5

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS   72 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~   72 (75)
                      .+. |+++++| .||.+.+|..++....+.+.+..+|....+.|.+..|..|+.  -.-|||.
T Consensus       278 p~~lr~m~~~G-heIgnHT~sH~~l~~ls~~~~~~EI~~s~~~L~~~~G~~~~~--fr~PyG~  337 (431)
T 2c1i_A          278 EDLVKRIKSEG-HVVGNHSWSHPILSQLSLDEAKKQITDTEDVLTKVLGSSSKL--MRPPYGA  337 (431)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCE--ECCGGGC
T ss_pred             HHHHHHHHHCC-CEEeecCCCCcccccCCHHHHHHHHHHHHHHHHHhhCCCCeE--EECCCCC
Confidence            356 9999999 899999999999988899999999999999999999987653  3345554

>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}

Probab=92.74  E-value=0.36  Score=33.27  Aligned_cols=59  Identities=12%  Similarity=0.079  Sum_probs=44.9

Q ss_pred             hh-HHHHhcCceEEEcceeeeeccCC-----------------------CC----HHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         12 PI-VSLVKSGQLEIVTGGWVMTDEAN-----------------------SH----YYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        12 ~~-k~lV~~GqlE~v~GgWv~~Dea~-----------------------~~----~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      +. |+++++|-.||.+.+|.+|....                       .+    -+.+..+|....+.|++.+|..|+.
T Consensus       127 ~~lr~m~~~G~~eIgsHT~~hH~~~~~~~~G~~~p~~~~~~y~~~~~~~es~~~~~~~i~~ei~~s~~~l~~~~G~~~~~  206 (268)
T 3vus_A          127 QQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHV  206 (268)
T ss_dssp             HHHHHHHHTTSEEECBCCSSCCSBCCCC-----CBTTSSCCEETTTTEECCHHHHHHHHHHHHHHHHHHHHHHSCCCCCE
T ss_pred             HHHHHHHHCCCeEEecCccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence            45 99999999999999998554211                       01    3457788999999999999998874


Q ss_pred             eeecCCCCC
Q psy11172         64 LHNNSRTIS   72 (75)
Q Consensus        64 ~W~~D~Fg~   72 (75)
                        -.-|||.
T Consensus       207 --fr~PyG~  213 (268)
T 3vus_A          207 --FVWPYGE  213 (268)
T ss_dssp             --EECGGGC
T ss_pred             --EEeCCCc
Confidence              2446664

>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}

Probab=91.88  E-value=0.21  Score=35.33  Aligned_cols=59  Identities=15%  Similarity=0.135  Sum_probs=46.6

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccC-----CCCHHHHHHHHHHHHHHHHhhhC--CCCCceeecCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEA-----NSHYYSMIQQLTHGQQWLLTNIG--VKPRYLHNNSRTIS   72 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea-----~~~~~~~i~Q~~~G~~fl~~~fg--~~P~~~W~~D~Fg~   72 (75)
                      .+. |+++++| .||.+.+|..++..     ..+.+.+.++|....+.|++..|  .+|+.  -.-|+|.
T Consensus       150 p~~vr~i~~~G-heIgnHt~sH~~~~~~~~~~ls~~~~~~Ei~~~~~~L~~~~G~~~~p~~--fR~PyG~  216 (311)
T 2w3z_A          150 KPILQRQITEG-HALGIHSFSHVYSLLYPNRVGNTQQIVSEVTRTQNALKDQLGQNFKTGV--WRYPGGH  216 (311)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCHHHHSGGGBCCHHHHHHHHHHHHHHHHHHHCTTBCCCE--ECCTTCG
T ss_pred             HHHHHHHHHCC-CeeeccCCccccccccccCCCCHHHHHHHHHHHHHHHHHHhCCCCCCcE--EECCCCC
Confidence            466 9999999 89999999887653     34789999999999999999999  55542  3344553

>4hd5_A Polysaccharide deacetylase; TIM barrel, hydrolase; 1.90A {Bacillus cereus}

Probab=89.60  E-value=0.59  Score=34.36  Aligned_cols=58  Identities=12%  Similarity=-0.027  Sum_probs=46.7

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS   72 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~   72 (75)
                      .+. |++.++|-+||-+.++..++....+-  .-++|....+.|.+.+|..|+.  -+=|||.
T Consensus       247 w~qIrem~~~G~~eIGsHT~sH~~L~~ls~--~e~EI~~Sk~~Le~~lG~~v~~--FAYPyG~  305 (360)
T 4hd5_A          247 TSEIKEMVDSGIFSVQSHTATHADLPKITN--YEEELKGSKEKLEKITGKPVIA--IAYXFGH  305 (360)
T ss_dssp             HHHHHHHHHTTSEEEEECCSSCCCGGGCSC--HHHHHHHHHHHHHHHHSSCCCE--EECGGGC
T ss_pred             HHHHHHHHHcCCceeeccCCcccccccCCH--HHHHHHHHHHHHHHHhCCCCcE--EEcCCCC
Confidence            344 99999999999999999998765543  3479999999999999998864  3456664

>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*

Probab=84.07  E-value=1.9  Score=33.66  Aligned_cols=59  Identities=12%  Similarity=0.077  Sum_probs=45.2

Q ss_pred             hh-HHHHhcCceEEEcceee-eeccCC-----------C-----------C----HHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         12 PI-VSLVKSGQLEIVTGGWV-MTDEAN-----------S-----------H----YYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        12 ~~-k~lV~~GqlE~v~GgWv-~~Dea~-----------~-----------~----~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      +. |++.++|-+||-+.+|. .++...           +           +    -+.+.++|....+.|++.+|..|+.
T Consensus       131 ~qlrem~~sG~~EIGsHT~shH~~l~~~p~G~~~Pa~l~r~~~~~~~~~es~~e~~~~i~~EL~~Sk~~Le~~lG~~~~~  210 (618)
T 4f9d_A          131 QQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHV  210 (618)
T ss_dssp             HHHHHHHHHTSEEECBCCSSCCSEEECSTTCCEEEGGGSCCEETTTTEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHHHHHCCCcEEeecccccccccccccccccccchhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence            55 99999999999999998 433211           0           1    2568899999999999999998874


Q ss_pred             eeecCCCCC
Q psy11172         64 LHNNSRTIS   72 (75)
Q Consensus        64 ~W~~D~Fg~   72 (75)
                        -.=|||.
T Consensus       211 --FayPyG~  217 (618)
T 4f9d_A          211 --FVWPYGE  217 (618)
T ss_dssp             --EECGGGC
T ss_pred             --EEcCCCC
Confidence              2446664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d3bvua3	381	c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fru	2e-12
g1o7d.3	330	c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-manno	3e-11
d1k1xa3	310	c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-te	3e-04

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 381

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.1 bits (140), Expect = 2e-12
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           + S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P 
Sbjct: 119 MKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPT 168

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 310

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: 4-alpha-glucanotransferase, N-terminal domain
domain: 4-alpha-glucanotransferase, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS 72
           + SL+K GQLEIV  G+     A       + Q+    +     +G   + +    R   
Sbjct: 69  LRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEML-KDYARKLGYDAKGVWLTERVWQ 127

Query: 73  S 73
            
Sbjct: 128 P 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d3bvua3	381	Golgi alpha-mannosidase II {Fruit fly (Drosophila	99.97
g1o7d.3	330	Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax	99.94
d1k1xa3	310	4-alpha-glucanotransferase, N-terminal domain {Arc	99.65
d1ufaa2	412	Hypothetical protein TT1467, N-terminal domain {Th	98.61
d2b5dx2	404	Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23	98.5
d2c71a1	204	Xylanase XynA C-terminal domain {Clostridium therm	96.47
d2cc0a1	192	Acetyl-xylan esterase {Streptomyces lividans [TaxI	96.42
d2c1ia1	196	Peptidoglycan GlcNAc deacetylase C-terminal domain	96.36
d2iw0a1	220	Chitin deacetylase {Bean anthracnose fungus (Colle	96.07
d1ny1a_	235	Probable polysaccharide deacetylase PdaA {Bacillus	95.39
d2j13a1	235	Putative polysaccharide deacetylase BA0424 {Bacill	95.38
d1z7aa1	301	Hypothetical protein PA1517 {Pseudomonas aeruginos	90.61
d1ldda_	74	Anaphase promoting complex (APC) {Baker's yeast (S	84.09

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=9.9e-32  Score=197.75  Aligned_cols=74  Identities=45%  Similarity=0.605  Sum_probs=72.6

Q ss_pred             CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      +||++++|+.+++ |+||++||||||||||||||||+++++++|+||+.|++||+++||+.|++||++||||||+
T Consensus       106 ~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~  180 (381)
T d3bvua3         106 RFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSP  180 (381)
T ss_dssp             HHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECSSSSBCT
T ss_pred             HHHHHcCHHHHHHHHHHHHCCCEEEeCCeeecccccCCCHHHHHHHHHHHHHHHHHHcCCCCceEEeeCCCCccH
Confidence            4899999999999 9999999999999999999999999999999999999999999999999999999999997

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: 4-alpha-glucanotransferase, N-terminal domain
domain: 4-alpha-glucanotransferase, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.65  E-value=1.6e-17  Score=116.09  Aligned_cols=71  Identities=21%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             CCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172          2 SWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP   74 (75)
Q Consensus         2 Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~   74 (75)
                      ||++.+|+..++ |+|+++||+||++|+|+++|+++.+.+++++|+..|+. ++++||++|+++|++| +++||
T Consensus        57 ~~~~~~p~~~~~~~~l~~~G~iE~~~~~~~h~~~~l~~~~~~~~qi~~~~~-~~~~fG~~p~~~w~pe-~~~~~  128 (310)
T d1k1xa3          57 WIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKD-YARKLGYDAKGVWLTE-RVWQP  128 (310)
T ss_dssp             HHHHHCHHHHHHHHHHHHTTCEEEEBCCTTCCCGGGSCHHHHHHHHHHHHH-HHHHTTCCCCEEECGG-GCBCT
T ss_pred             HHHHHCHHHHHHHHHHHHcCCcEEecCcccccchhhccHHHHHHHHHHHHH-HHHHhhccCCeEECCc-cccCH
Confidence            677788888888 99999999999999999999999999999999998765 5779999999999999 77887

>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: AmyC N-terminal domain-like
domain: Hypothetical protein TT1467, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=1.2e-08  Score=74.19  Aligned_cols=64  Identities=13%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             CCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCH-HHHHHHHHHHHHHHHhhhCCCCCceeecC
Q psy11172          5 GEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHY-YSMIQQLTHGQQWLLTNIGVKPRYLHNNS   68 (75)
Q Consensus         5 ~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~-~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D   68 (75)
                      +..++.-+. |+|+++||+|++++++..+-..+.+. +++..|+..|...+++.||++|++.|.+-
T Consensus       119 ~~~~~~i~~~r~L~~~G~vEl~~~~y~H~ilpll~~~~~~~~Qi~~~~~~~~~~fG~~P~G~W~~E  184 (412)
T d1ufaa2         119 RLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPTGFWLPE  184 (412)
T ss_dssp             HTTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCCBEECGG
T ss_pred             HhhhhHHHHHHHHHHcCCeEEEeccchhhhhhcCCcHHHHHHHHHHHHHHHHHHcCCCCCeEeCcc
Confidence            345566778 99999999999999999999999875 67889999999999999999999999874

>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: AmyC N-terminal domain-like
domain: Alpha-amylase AmyC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=7.6e-08  Score=69.50  Aligned_cols=62  Identities=19%  Similarity=0.027  Sum_probs=54.9

Q ss_pred             CCChhhh-HHHHhcCceEEEcceeeeeccCCCC--HHHHHHHHHHHHHHHHhhhCCCCCceeecC
Q psy11172          7 IPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSH--YYSMIQQLTHGQQWLLTNIGVKPRYLHNNS   68 (75)
Q Consensus         7 ~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~--~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D   68 (75)
                      .++.-+. |+|+++||+|++++++..+-..+..  -+++-.|+..|.+.+++.||++|++.|.+-
T Consensus       121 ~~~vi~~~r~L~~~G~vEll~~~y~Hpilpll~~~~e~~~~Qi~~g~~~~~~~fG~~P~G~W~pE  185 (404)
T d2b5dx2         121 DGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPRGIWLAE  185 (404)
T ss_dssp             TTCTHHHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHHHHHHHHHHHHHHHHSSCCSEEECGG
T ss_pred             chHHHHHHHHHHHcCCeeEEeccchhhhhhhccCChHHHHHHHHHHHHHHHHHhCCCCCEEECCc
Confidence            3455677 9999999999999999999998755  478889999999999999999999999863

>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Xylanase XynA C-terminal domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.47  E-value=0.0042  Score=39.72  Aligned_cols=51  Identities=22%  Similarity=0.345  Sum_probs=47.5

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR   62 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~   62 (75)
                      .+. |+++++|. ||.+.+|-..+...-+.+++..+|....+.|++..|..|+
T Consensus        44 ~~~~k~i~~~Gh-eIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~~~   95 (204)
T d2c71a1          44 AAIIRRMVNSGH-EIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPK   95 (204)
T ss_dssp             HHHHHHHHHTTC-EEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHHHHHhhcCe-EEccccccccchhhcCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            456 89999996 9999999999999999999999999999999999998876

>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Acetyl-xylan esterase
species: Streptomyces lividans [TaxId: 1916]

Probab=96.42  E-value=0.0037  Score=39.77  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=51.9

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISS   73 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s   73 (75)
                      .+. |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+|+.  ---|+|..
T Consensus        46 p~~~~~~~~~G-heIgnHs~~H~~~~~ls~~~~~~ei~~~~~~i~~~~g~~~~~--fR~P~g~~  106 (192)
T d2cc0a1          46 PSLVRAQVDAG-MWVANHSYTHPHMTQLGQAQMDSEISRTQQAIAGAGGGTPKL--FRPPYGET  106 (192)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHTTSCCCSE--ECCGGGCC
T ss_pred             chhhHhHhhhh-hHHHhhhccCcchhhccHHHHHHHHHHHHHHHHHHhCCCccc--ccCchhhh
Confidence            456 8999999 699999999999999999999999999999999999998863  23466653

>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Peptidoglycan GlcNAc deacetylase C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.36  E-value=0.0051  Score=39.07  Aligned_cols=60  Identities=10%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISS   73 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s   73 (75)
                      .+. ++++++|. ||.+.+|-.++...-+.+.+..+|....+.|++.+|.+|+. + .-|||..
T Consensus        43 ~~~~~~~~~~Gh-eignHt~~H~~~~~~~~~~~~~ei~~~~~~i~~~~G~~~~~-f-r~P~g~~  103 (196)
T d2c1ia1          43 EDLVKRIKSEGH-VVGNHSWSHPILSQLSLDEAKKQITDTEDVLTKVLGSSSKL-M-RPPYGAI  103 (196)
T ss_dssp             HHHHHHHHHTTC-EEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCE-E-CCGGGCC
T ss_pred             cHHHHhhcCCCe-EEeccccCCcchhcCCHHHHHHHHHHHHHHHHHHhCCCCcc-c-cCchhhc
Confidence            456 99999996 99999999999999999999999999999999999998853 2 3466643

>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Chitin deacetylase
species: Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]

Probab=96.07  E-value=0.0063  Score=39.05  Aligned_cols=52  Identities=12%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             hhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172         10 HKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR   62 (75)
Q Consensus        10 ~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~   62 (75)
                      ..+. |+++++| .||.+.+|..++...-+.+++.++|....+.|++..|..|+
T Consensus        59 ~p~~~~~~~~~G-heIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~~~g~~~~  111 (220)
T d2iw0a1          59 NPDTIRRMRADG-HLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRIDGFAPK  111 (220)
T ss_dssp             HHHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCEES
T ss_pred             CHHHHHHHHhcC-cEEecccccccchhhhchHHHHHHHHHHHHHHHHhhCCCCc
Confidence            4567 9999999 69999999999999999999999999999999999998776

>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Probable polysaccharide deacetylase PdaA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.39  E-value=0.022  Score=37.14  Aligned_cols=52  Identities=10%  Similarity=0.083  Sum_probs=47.3

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY   63 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~   63 (75)
                      .+. ++++++|. ||.+++|-.++....+.+.+..+|....+.|++..|.+|..
T Consensus        85 ~~~~~~~~~~Gh-eIgnHt~~H~~~~~~s~~~~~~ei~~~~~~i~~~~G~~~~~  137 (235)
T d1ny1a_          85 PQLIKRMSDEGH-IIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNL  137 (235)
T ss_dssp             HHHHHHHHHTTC-EEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHhhcCe-EEeccccccCCcccCCHHHHHHHHHHHHHHHHHHhhccccc
Confidence            456 99999996 99999999999999999999999999999999999987764

>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: NodB-like polysaccharide deacetylase
domain: Putative polysaccharide deacetylase BA0424
species: Bacillus anthracis [TaxId: 1392]

Probab=95.38  E-value=0.021  Score=37.09  Aligned_cols=59  Identities=15%  Similarity=0.089  Sum_probs=49.8

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCC
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTI   71 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg   71 (75)
                      .+. ++++++| .||.+.+|...|....+.+++.++|....+.|++..|.+|.. |..-|+|
T Consensus        87 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~-~~rpp~G  146 (235)
T d2j13a1          87 KDLLLRMKDEG-HIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVK-YVRPPRG  146 (235)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHCCSCCC-EECCGGG
T ss_pred             HHHHHHhhcCC-eEEeeeecCCCChhhCCHHHHHHHHHHHHHHHHHHhhccccc-cccCChh
Confidence            356 8899999 789999999999999999999999999999999999987743 3333444

>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: PA1517-like
domain: Hypothetical protein PA1517
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.61  E-value=0.29  Score=32.89  Aligned_cols=55  Identities=16%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeec
Q psy11172         11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNN   67 (75)
Q Consensus        11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~   67 (75)
                      -++ +.++++| .||++.||-+.+-..-+.+...+.|.++.+-|++.-|.+|+. |..
T Consensus       107 P~~v~~i~~~G-hEi~~HG~~h~~~~~l~~~~e~~~i~~~~~~l~~~tG~~p~G-~~~  162 (301)
T d1z7aa1         107 PEVIRAMVADG-HEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGQRPVG-WYT  162 (301)
T ss_dssp             HHHHHHHHHTT-CEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSSCCCE-ECC
T ss_pred             hHHHHHHHHcC-ceeecCcccccccccCCHHHHHHHHHHHHHHHHHhccCCccc-ccC
Confidence            455 7888888 699999999988888899999999999999999999988864 554

>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: SCF ubiquitin ligase complex WHB domain
domain: Anaphase promoting complex (APC)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.09  E-value=0.16  Score=28.43  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=15.9

Q ss_pred             hhhh-HHHHhcCceEEEccee
Q psy11172         10 HKPI-VSLVKSGQLEIVTGGW   29 (75)
Q Consensus        10 ~k~~-k~lV~~GqlE~v~GgW   29 (75)
                      .++- .++|++|++|+++||-
T Consensus        50 L~~FL~~~V~e~kL~~v~gG~   70 (74)
T d1ldda_          50 LEGYLNTLADEGRLKYIANGS   70 (74)
T ss_dssp             HHHHHHHHHHTTSEECCTTTE
T ss_pred             HHHHHHHHHhcCceEEecCCE
Confidence            4556 8999999999986553