Psyllid ID: psy11248

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
GYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQARESGGYFRSSIETYNNNENHSNKNTSNGLDSVETHYNNNKLENYQNSSNHGLS
ccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccEEEEEcccccEEEEccccccccccccccEEEEEEcccEEEEEcccccccccEEcccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccc
ccccHHHHHHcccccHHcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccEEEEEEEccEEEEEccEEEEccccccccEEEEEccccEEEEEEccHHHHHEcccccccccccEEEEEEEEEcccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHccccccccccccccccccc
GYTYGSQLVRkglgnerlypegevdpipaWIQSLVITKleqmgvvppnyinsavindyqpggcivshidpphifdrpiislslfsdsalcfgckfnfkpirvsepvlylpvqRGCVTLLRDFAangithcvrpqdtQYRRAVILLRRVlphaprltlsqtprvkpyhslydvqaresggyfrSSIEtynnnenhsnkntsngldSVETHynnnklenyqnssnhgls
gytygsqlvrkgLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANgithcvrpqdtqYRRAVILLRrvlphaprltlsqtprvkpyhsLYDVQARESGGYFRSSIETYNNNENHSNKNTSNGLDSVETHYNnnklenyqnssnhgls
GYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQARESGGYFRSSIetynnnenhsnkntsnGLDSVETHYNNNKLENYQNSSNHGLS
***********GLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQAR***GYF**********************************************
GYTYGS*LVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFN******SEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQYRRAVILLRRVLPHA***************************************************************************
GYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQARESGGYFRSSIETYNNNENHSNKNTSNGLDSVETHYNNNKLENY*********
GYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDV*******************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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GYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRLTLSQTPRVKPYHSLYDVQARESGGYFRSSIETYNNNENHSNKNTSNGLDSVETHYNNNKLENYQNSSNHGLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query227 2.2.26 [Sep-21-2011]
Q66JG8358 RNA demethylase ALKBH5 OS yes N/A 0.696 0.441 0.677 6e-64
Q6GPB5360 RNA demethylase ALKBH5 OS N/A N/A 0.696 0.438 0.658 4e-63
Q08BA6352 RNA demethylase ALKBH5 OS yes N/A 0.682 0.440 0.683 3e-62
D3ZKD3395 RNA demethylase ALKBH5 OS yes N/A 0.682 0.392 0.683 1e-61
Q3TSG4395 RNA demethylase ALKBH5 OS yes N/A 0.682 0.392 0.683 1e-61
Q6P6C2394 RNA demethylase ALKBH5 OS yes N/A 0.682 0.393 0.683 1e-61
E1BH29394 RNA demethylase ALKBH5 OS yes N/A 0.682 0.393 0.683 2e-61
>sp|Q66JG8|ALKB5_XENTR RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1 Back     alignment and function desciption
 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 130/158 (82%)

Query: 1   GYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQP 60
           GYTYG+QL R+G G ERLYP+GEVD IPAW+  LVI +L +  V+P  ++NSAVINDYQP
Sbjct: 104 GYTYGAQLQRRGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFVNSAVINDYQP 163

Query: 61  GGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLR 120
           GGCIVSH+DP HIF+RPI+S+S FSDSALCFGCKF FKPIRVSEPV +LPVQRG VT+L 
Sbjct: 164 GGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVFFLPVQRGSVTVLS 223

Query: 121 DFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRLTLS 158
            +AA+ ITHC+RPQD + RRAV++LR+    APRL + 
Sbjct: 224 GYAADEITHCIRPQDIKERRAVVILRKTRTEAPRLEMK 261
Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.
Xenopus tropicalis (taxid: 8364)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q6GPB5|ALKB5_XENLA RNA demethylase ALKBH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1 Back     alignment and function description
>sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1 Back     alignment and function description
>sp|D3ZKD3|ALKB5_RAT RNA demethylase ALKBH5 OS=Rattus norvegicus GN=Alkbh5 PE=3 SV=1 Back     alignment and function description
>sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5 OS=Mus musculus GN=Alkbh5 PE=1 SV=2 Back     alignment and function description
>sp|Q6P6C2|ALKB5_HUMAN RNA demethylase ALKBH5 OS=Homo sapiens GN=ALKBH5 PE=1 SV=2 Back     alignment and function description
>sp|E1BH29|ALKB5_BOVIN RNA demethylase ALKBH5 OS=Bos taurus GN=ALKBH5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
56118909 358 RNA demethylase ALKBH5 [Xenopus (Siluran 0.696 0.441 0.677 3e-62
118097886 374 PREDICTED: probable alpha-ketoglutarate- 0.682 0.414 0.703 1e-61
148231788 360 RNA demethylase ALKBH5 [Xenopus laevis] 0.696 0.438 0.658 2e-61
224070277 383 PREDICTED: probable alpha-ketoglutarate- 0.682 0.404 0.703 3e-61
348537052 357 PREDICTED: probable alpha-ketoglutarate- 0.709 0.450 0.644 3e-61
327287260 379 PREDICTED: probable alpha-ketoglutarate- 0.691 0.414 0.687 4e-61
387015598 389 alkylated DNA repair protein alkB-like 5 0.682 0.398 0.696 8e-61
344298054 394 PREDICTED: probable alpha-ketoglutarate- 0.682 0.393 0.690 1e-60
395514234 384 PREDICTED: probable alpha-ketoglutarate- 0.682 0.403 0.690 1e-60
126333790 384 PREDICTED: probable alpha-ketoglutarate- 0.682 0.403 0.690 1e-60
>gi|56118909|ref|NP_001008038.1| RNA demethylase ALKBH5 [Xenopus (Silurana) tropicalis] gi|82181400|sp|Q66JG8.1|ALKB5_XENTR RecName: Full=RNA demethylase ALKBH5; AltName: Full=Alkylated DNA repair protein alkB homolog 5; AltName: Full=Alpha-ketoglutarate-dependent dioxygenase alkB homolog 5 gi|51704081|gb|AAH80920.1| MGC79570 protein [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 130/158 (82%)

Query: 1   GYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQP 60
           GYTYG+QL R+G G ERLYP+GEVD IPAW+  LVI +L +  V+P  ++NSAVINDYQP
Sbjct: 104 GYTYGAQLQRRGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFVNSAVINDYQP 163

Query: 61  GGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLR 120
           GGCIVSH+DP HIF+RPI+S+S FSDSALCFGCKF FKPIRVSEPV +LPVQRG VT+L 
Sbjct: 164 GGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVFFLPVQRGSVTVLS 223

Query: 121 DFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRLTLS 158
            +AA+ ITHC+RPQD + RRAV++LR+    APRL + 
Sbjct: 224 GYAADEITHCIRPQDIKERRAVVILRKTRTEAPRLEMK 261

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|118097886|ref|XP_001233463.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Gallus gallus] Back     alignment and taxonomy information
>gi|148231788|ref|NP_001085704.1| RNA demethylase ALKBH5 [Xenopus laevis] gi|82201093|sp|Q6GPB5.1|ALKB5_XENLA RecName: Full=RNA demethylase ALKBH5; AltName: Full=Alkylated DNA repair protein alkB homolog 5; AltName: Full=Alpha-ketoglutarate-dependent dioxygenase alkB homolog 5 gi|49118231|gb|AAH73226.1| MGC80552 protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|224070277|ref|XP_002188303.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|348537052|ref|XP_003456009.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|327287260|ref|XP_003228347.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|387015598|gb|AFJ49918.1| alkylated DNA repair protein alkB-like 5 protein [Crotalus adamanteus] Back     alignment and taxonomy information
>gi|344298054|ref|XP_003420709.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Loxodonta africana] Back     alignment and taxonomy information
>gi|395514234|ref|XP_003761324.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|126333790|ref|XP_001364359.1| PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH5 [Monodelphis domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
UNIPROTKB|F1NIA5375 ALKBH5 "Uncharacterized protei 0.726 0.44 0.680 3.2e-58
UNIPROTKB|Q66JG8358 alkbh5 "RNA demethylase ALKBH5 0.691 0.438 0.681 4e-58
UNIPROTKB|Q6GPB5360 alkbh5 "RNA demethylase ALKBH5 0.691 0.436 0.662 2.8e-57
UNIPROTKB|E1BH29394 ALKBH5 "RNA demethylase ALKBH5 0.726 0.418 0.662 1.2e-56
UNIPROTKB|E2RPR0434 ALKBH5 "Uncharacterized protei 0.726 0.380 0.662 1.2e-56
UNIPROTKB|Q6P6C2394 ALKBH5 "RNA demethylase ALKBH5 0.726 0.418 0.662 1.2e-56
ZFIN|ZDB-GENE-061013-602352 alkbh5 "alkB, alkylation repai 0.779 0.502 0.617 1.2e-56
RGD|1309496395 Alkbh5 "alkB, alkylation repai 0.682 0.392 0.683 3.3e-56
MGI|MGI:2144489395 Alkbh5 "alkB, alkylation repai 0.682 0.392 0.683 4.2e-56
UNIPROTKB|I3LGP5327 ALKBH5 "Uncharacterized protei 0.607 0.422 0.582 2.1e-38
UNIPROTKB|F1NIA5 ALKBH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 113/166 (68%), Positives = 133/166 (80%)

Query:     1 GYTYGSQLVRKGLGNERLYPEGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQP 60
             GYTYGSQL R+G G ERLYP GEVD IP W+  LVI KL +  V+P  ++NSAVINDYQP
Sbjct:   117 GYTYGSQLQRRGPGQERLYPRGEVDAIPEWVHDLVIRKLVEHRVIPEGFVNSAVINDYQP 176

Query:    61 GGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLR 120
             GGCIVSH+DP HIF+RPI+S+S FSDSALCFGCKF FKPIRVSEPVL+LPV+RG VT+L 
Sbjct:   177 GGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLFLPVKRGSVTVLS 236

Query:   121 DFAANGITHCVRPQDTQYRRAVILLRRVLPHAPRL-TLSQTPRVKP 165
              +AA+ ITHC+RPQD + RRAVI+LR+    APRL T S +  V P
Sbjct:   237 GYAADEITHCIRPQDIKERRAVIILRKTRLDAPRLETKSLSSSVLP 282
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
UNIPROTKB|Q66JG8 alkbh5 "RNA demethylase ALKBH5" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GPB5 alkbh5 "RNA demethylase ALKBH5" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E1BH29 ALKBH5 "RNA demethylase ALKBH5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPR0 ALKBH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P6C2 ALKBH5 "RNA demethylase ALKBH5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-602 alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1309496 Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2144489 Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LGP5 ALKBH5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q08BA6ALKB5_DANRE1, ., 1, 4, ., 1, 1, ., -0.68380.68280.4403yesN/A
E1BH29ALKB5_BOVIN1, ., 1, 4, ., 1, 1, ., -0.68380.68280.3934yesN/A
Q3TSG4ALKB5_MOUSE1, ., 1, 4, ., 1, 1, ., -0.68380.68280.3924yesN/A
Q6P6C2ALKB5_HUMAN1, ., 1, 4, ., 1, 1, ., -0.68380.68280.3934yesN/A
D3ZKD3ALKB5_RAT1, ., 1, 4, ., 1, 1, ., -0.68380.68280.3924yesN/A
Q66JG8ALKB5_XENTR1, ., 1, 4, ., 1, 1, ., -0.67720.69600.4413yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 3e-06
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 1e-04
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 23  EVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHI-FDRPIISL 81
              P PA +  L   +L      P    N+ ++N Y+PG  +  H D   + F  PI+S+
Sbjct: 68  PWPPFPAVLLQLA-ERLAAAAGPPGFEPNACLVNFYRPGARMGLHQDKDELDFGAPIVSV 126

Query: 82  SLFSDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRP 133
           SL  D AL     F F      +P + LP++ G V L+    +    H V  
Sbjct: 127 SL-GDPAL-----FRFGGKTRDDPTIALPLESGDV-LVMGGPSRLAYHGVPR 171

Length = 190
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 227
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 99.96
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 99.96
KOG4176|consensus323 99.92
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 99.91
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.85
KOG3200|consensus224 99.83
KOG3959|consensus306 99.63
KOG2731|consensus378 98.28
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.27
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.21
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 96.8
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 96.66
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.72
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 94.57
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 94.34
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 91.12
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 90.34
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 89.17
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 88.06
PLN00052310 prolyl 4-hydroxylase; Provisional 86.93
PLN02947374 oxidoreductase 86.83
PLN02254358 gibberellin 3-beta-dioxygenase 85.12
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.93
PLN02156335 gibberellin 2-beta-dioxygenase 84.62
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.58
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.37
PLN02704335 flavonol synthase 84.25
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.22
PLN02276361 gibberellin 20-oxidase 82.95
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 82.36
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 81.35
PTZ00273320 oxidase reductase; Provisional 80.73
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information 
Probab=99.96  E-value=2.7e-29  Score=218.66  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=99.7

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHcCcCCCCCCcEEEEeeeCCCCCcCCCCC-CCCCCCCCeEEEecCCCcccccCeeEeeec
Q psy11248         21 EGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHID-PPHIFDRPIISLSLFSDSALCFGCKFNFKP   99 (227)
Q Consensus        21 ~~~~~piP~~L~~l~i~rl~~~~~~~~~~pn~~lVN~Y~~G~~I~pH~D-~~~~fg~~IvsvSL~s~~~Lg~g~~m~F~~   99 (227)
                      ...+++||++|..|. +++.....+....||+||||+|.+|++|+||+| ++..|+.+|++||      ||..|+|.|++
T Consensus        87 ~~pwp~~P~~l~~L~-~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvS------LG~~~~F~~~~  159 (213)
T PRK15401         87 GKPWPAMPASFLALA-QRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVS------LGLPAVFQFGG  159 (213)
T ss_pred             CCCCCCchHHHHHHH-HHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEe------CCCCeEEEecc
Confidence            456888999999998 776544333333399999999999999999999 4667899999999      88899999987


Q ss_pred             CCCCCCeEEEEecCCcEEEeccccccccccCCcCCCC------CCCeEEEEEeee
Q psy11248        100 IRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDT------QYRRAVILLRRV  148 (227)
Q Consensus       100 ~~~~~~~~~v~L~~GSLLVM~G~ar~~w~H~Ip~~~~------~~~RISLTFR~v  148 (227)
                      .+...+..+|.|++||||||+|++|+ |.|+|++...      .+.|||||||++
T Consensus       160 ~~~~~~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~  213 (213)
T PRK15401        160 LKRSDPLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA  213 (213)
T ss_pred             cCCCCceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence            66666778999999999999999997 5599998732      237999999975

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>KOG4176|consensus Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3200|consensus Back     alignment and domain information
>KOG3959|consensus Back     alignment and domain information
>KOG2731|consensus Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 3e-12
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 2e-08
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
 Score = 64.0 bits (155), Expect = 3e-12
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 25  DPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLF 84
             +P   +S +   L +      +  +   IN Y+PG  I +HID    F+  I+SLSL 
Sbjct: 174 GGLPDICESFLEKWLRK--GYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLG 231

Query: 85  SDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQDTQYRRAVIL 144
           S+         +FK        + LP  R  + ++   +    TH +  +     +A   
Sbjct: 232 SE------IVMDFKHPDGIAVPVMLP--RRSLLVMTGESRYLWTHGITCRKFDTVQASES 283

Query: 145 LRRVLPHAPRLTLSQTPR 162
           L+  +  +    L+ + R
Sbjct: 284 LKSGIITSDVGDLTLSKR 301
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 99.97
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 99.97
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 99.95
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 99.95
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 94.86
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 94.75
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.58
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 93.2
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 93.05
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 92.21
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 90.97
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 90.39
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 85.76
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 84.91
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 84.8
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 84.79
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 84.7
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 83.94
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 81.13
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
Probab=99.97  E-value=1.3e-31  Score=245.96  Aligned_cols=135  Identities=24%  Similarity=0.319  Sum_probs=117.6

Q ss_pred             CCCCcHHHHHHHHHHHHHcCcCCCCCCcEEEEeeeCCCCCcCCCCCCCCCCCCCeEEEecCCCcccccCeeEeeecCCCC
Q psy11248         24 VDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDPPHIFDRPIISLSLFSDSALCFGCKFNFKPIRVS  103 (227)
Q Consensus        24 ~~piP~~L~~l~i~rl~~~~~~~~~~pn~~lVN~Y~~G~~I~pH~D~~~~fg~~IvsvSL~s~~~Lg~g~~m~F~~~~~~  103 (227)
                      +.+||+||..|+ +|+.+.++++.. ||+|+||+|.+|++|+||+|+++.|+++|++||      ||..++|.|++.+  
T Consensus       173 p~~~P~~L~~l~-~r~~~~~~~~~~-~n~~lvN~Y~~G~~I~~H~D~~~~~~~~I~slS------LG~~~~f~f~~~~--  242 (345)
T 3tht_A          173 SGGLPDICESFL-EKWLRKGYIKHK-PDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLS------LGSEIVMDFKHPD--  242 (345)
T ss_dssp             --CCCHHHHHHH-HHHHHHTSCSSC-CSEEEEEEECTTCCEEEECCCTTTBCSCEEEEE------ESSCEEEEEECTT--
T ss_pred             CcCcCHHHHHHH-HHHHhcccCCCC-CCEEEEEEecCCCCEeeccCCchhcCCeEEEEE------CCCceeEEEccCC--
Confidence            357999999998 998777776654 999999999999999999999889999999999      7888889998743  


Q ss_pred             CCeEEEEecCCcEEEeccccccccccCCcCCC-------------------------CCCCeEEEEEeeecCCCCCCCCC
Q psy11248        104 EPVLYLPVQRGCVTLLRDFAANGITHCVRPQD-------------------------TQYRRAVILLRRVLPHAPRLTLS  158 (227)
Q Consensus       104 ~~~~~v~L~~GSLLVM~G~ar~~w~H~Ip~~~-------------------------~~~~RISLTFR~v~p~~~~~~~~  158 (227)
                      ...++|.|++||||||.|++|+.|+|+|+++.                         .+++|||||||++++        
T Consensus       243 ~~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~r~~RiSlT~R~v~~--------  314 (345)
T 3tht_A          243 GIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDLTLSKRGLRTSFTFRKVRQ--------  314 (345)
T ss_dssp             SCEEEEEECTTEEEEECTHHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCEEEEECCCEEEEEEECBCS--------
T ss_pred             CceEEEEcCCCcEEEEChHHhhceEccCCcccCCccCcccccccccccccCCCceeccCCCEEEEEEEecCC--------
Confidence            34789999999999999999999999999981                         167899999999974        


Q ss_pred             CCCCCccccchhhhhhhcc
Q psy11248        159 QTPRVKPYHSLYDVQARES  177 (227)
Q Consensus       159 ~~p~~~~~~~~~d~~~~~~  177 (227)
                       .||.|.+.++||+|.+++
T Consensus       315 -~~c~C~~~~~cd~~~~~~  332 (345)
T 3tht_A          315 -TPCNCSYPLVCDSQRKEN  332 (345)
T ss_dssp             -SCCCCSCTTTCTTTTTTC
T ss_pred             -CCcCCCCCCcccCCCccC
Confidence             379999999999997663
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 227
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 3e-09
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 0.001
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 52.8 bits (126), Expect = 3e-09
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 26  PIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHIDP-PHIFDRPIISLSLF 84
            +P    +L        G  P    ++ +IN Y PG  +  H D        PI+S+SL 
Sbjct: 77  AMPQSFHNLCQRAATAAGY-PDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLG 135

Query: 85  SDSALCFGCKFNFKPIRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRP 133
                     F F  ++ ++P+  L ++ G V +     +    H ++P
Sbjct: 136 L------PAIFQFGGLKRNDPLKRLLLEHGDVVVWGGE-SRLFYHGIQP 177
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 99.96
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 99.94
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 91.67
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 89.96
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 85.66
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 83.35
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=4.7e-30  Score=217.42  Aligned_cols=120  Identities=22%  Similarity=0.321  Sum_probs=102.3

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHcCcCCCCCCcEEEEeeeCCCCCcCCCCC-CCCCCCCCeEEEecCCCcccccCeeEeeec
Q psy11248         21 EGEVDPIPAWIQSLVITKLEQMGVVPPNYINSAVINDYQPGGCIVSHID-PPHIFDRPIISLSLFSDSALCFGCKFNFKP   99 (227)
Q Consensus        21 ~~~~~piP~~L~~l~i~rl~~~~~~~~~~pn~~lVN~Y~~G~~I~pH~D-~~~~fg~~IvsvSL~s~~~Lg~g~~m~F~~   99 (227)
                      ...++|||++|.+|+ +++.....++...||+||||+|.+|+.|++|.| ++..|+.+|+|||      ||.+++|.|++
T Consensus        72 ~~~wp~iP~~l~~L~-~~~~~~~~~~~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~~pIvslS------LG~~~~f~f~~  144 (200)
T d2fdia1          72 NKPWPAMPQSFHNLC-QRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVS------LGLPAIFQFGG  144 (200)
T ss_dssp             SSBCCCCCHHHHHHH-HHHHHHHTCTTCCCSEEEEEEECTTCCEEEECCCCSSCTTSCEEEEE------EESCEEEEECC
T ss_pred             CCCCCCccHHHHHHH-HHHHHHcCCCccCCCeeEEEEecCCCCccccccCCccccCCCceEEE------EeCCeeEEecc
Confidence            455789999999998 887765444544599999999999999888766 6788999999999      88999999987


Q ss_pred             CCCCCCeEEEEecCCcEEEeccccccccccCCcCCC------CCCCeEEEEEeee
Q psy11248        100 IRVSEPVLYLPVQRGCVTLLRDFAANGITHCVRPQD------TQYRRAVILLRRV  148 (227)
Q Consensus       100 ~~~~~~~~~v~L~~GSLLVM~G~ar~~w~H~Ip~~~------~~~~RISLTFR~v  148 (227)
                      .....+..++.|++||||||+|++|+ |+|+|+++.      .++.|||||||+.
T Consensus       145 ~~~~~~~~~~~L~~Gdllvm~G~~r~-~~H~V~~~~~~~~~~~~~~RislTfR~~  198 (200)
T d2fdia1         145 LKRNDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHPLTIDCRYNLTFRQA  198 (200)
T ss_dssp             SSTTSCCEEEEECTTCEEEECGGGGG-CCEEECCCCCCCBTTTBTCEEEEEEECC
T ss_pred             cccCCceEEEEcCCCCEEEeCcchhh-eEecCCcccCCCCCCCCCCeEEEEEEec
Confidence            66667789999999999999999997 779999872      3467999999986
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure