Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value
Query 105
pfam07742 119
pfam07742, BTG, BTG family
6e-39
smart00099 108
smart00099, btg1, tob/btg1 family
1e-33
>gnl|CDD|149033 pfam07742, BTG, BTG family
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Score = 125 bits (317), Expect = 6e-39
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
M +I+AAV F+ +L+ Q+E F +L L +++ HW+P+ P++GQ YRC
Sbjct: 1 MYTEIAAAVNFVCRLL-FGKGKLPRRQVEIFAEELENALVEKYKGHWYPDNPSKGQAYRC 59
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
IR+N N D +E AA G+ YED+ LP ELT+WVDP EV R
Sbjct: 60 IRINCNEGMDPCIEKAAAESGLDYEDLLSLLPKELTIWVDPGEVSYR 106
>gnl|CDD|128410 smart00099, btg1, tob/btg1 family
Back Show alignment and domain information
Score = 111 bits (280), Expect = 1e-33
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 5/107 (4%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
M+ +I+AAV F+ L+ R + ++E F KL LL +++ NHW+PE P +G G+RC
Sbjct: 1 MKLEIAAAVNFITSLL-RKHNKLSKRRVEIFAEKLTRLLKEKYKNHWYPEKPYKGSGFRC 59
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
IR+N+ V D ++E A K G+ +D+ LP ELTLWVDP EV R
Sbjct: 60 IRINQKV--DPVIEQACKESGLDIDDLGGNLPKELTLWVDPFEVSYR 104
The tob/btg1 is a family of proteins that inhibit cell proliferation. Length = 108
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
105
smart00099 108
btg1 tob/btg1 family. The tob/btg1 is a family of
100.0
PF07742 118
BTG: BTG family; InterPro: IPR002087 Anti-prolifer
100.0
KOG4006|consensus
311
100.0
KOG4006|consensus
311
99.91
cd01768 87
RA RA (Ras-associating) ubiquitin domain. The RA (
91.4
cd00153 87
RalGDS_RA Ubiquitin domain of RalGDS-like factor (
88.48
smart00314 90
RA Ras association (RalGDS/AF-6) domain. RasGTP ef
85.08
PF00788 93
RA: Ras association (RalGDS/AF-6) domain; InterPro
84.23
COG3112 121
Uncharacterized protein conserved in bacteria [Fun
82.54
PF14026 77
DUF4242: Protein of unknown function (DUF4242)
80.69
>smart00099 btg1 tob/btg1 family
Back Hide alignment and domain information
Probab=100.00 E-value=7.8e-57 Score=310.47 Aligned_cols=102 Identities=45% Similarity=0.898 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccceeEEEecCCCCCCHHHHHHHHHh
Q psy11249 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAV 80 (105)
Q Consensus 1 M~~EI~~av~Fl~~~l~~~~~~l~~~~i~~F~~~L~~~L~~ry~~HW~P~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~s 80 (105)
|++||++|||||+++|+++ +++|+++++.|+++|++.|.+||+|||||++|+||||||||+|| +++||+|.+||.+|
T Consensus 1 M~~EI~~av~Fl~~~l~~~-~~l~~~~v~~F~~~L~~~L~~~y~~HWyP~~P~kGqayRCIrIn--~~~Dp~l~~Aa~~s 77 (108)
T smart00099 1 MKLEIAAAVNFITSLLRKH-NKLSKRRVEIFAEKLTRLLKEKYKNHWYPEKPYKGSGFRCIRIN--QKVDPVIEQACKES 77 (108)
T ss_pred ChHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEEEEEC--CcCCHHHHHHHHHh
Confidence 9999999999999999775 78999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCcccC--CCCccEEEEcCCceeeC
Q psy11249 81 GMSYEDMR--LPVELTLWVDPHEVCCR 105 (105)
Q Consensus 81 gl~~~~l~--lP~e~tlWvDPgeVs~R 105 (105)
||+++||. ||+|+||||||||||||
T Consensus 78 Gl~~~~l~~~LP~eltiwvDP~eVs~R 104 (108)
T smart00099 78 GLDIDDLGGNLPKELTLWVDPFEVSYR 104 (108)
T ss_pred CCCHHHHHHhCCcccEEEECCCEEEEe
Confidence 99999999 99999999999999998
The tob/btg1 is a family of proteins that inhibit cell proliferation.
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]
Back Show alignment and domain information
Probab=100.00 E-value=6e-56 Score=310.06 Aligned_cols=104 Identities=50% Similarity=0.915 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccceeEEEecCCCCCCHHHHHHHHHh
Q psy11249 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAV 80 (105)
Q Consensus 1 M~~EI~~av~Fl~~~l~~~~~~l~~~~i~~F~~~L~~~L~~ry~~HW~P~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~s 80 (105)
|++||++||+||+++|+++ +++|+++++.|+++|++.|.+||++||||++|+||||||||+||+++++||+|.+||.++
T Consensus 1 M~~EI~~av~Fl~~~l~~~-~~l~~~~~~~F~~~L~~~L~~ry~~HW~P~~P~kGsayRcIrin~~~~~Dp~l~~Aa~~s 79 (118)
T PF07742_consen 1 MKTEIAAAVNFLTRLLYNK-GRLPRRQVDRFAEELENLLCERYKGHWYPENPSKGSAYRCIRINPGHKMDPVLEQAAKES 79 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHH-C-B-HHHHHHHHHHHHHHHHHHHTTS--TTSTTTTHHHH-EEES--SSB-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHh
Confidence 9999999999999999986 579999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCcccC--CCCccEEEEcCCceeeC
Q psy11249 81 GMSYEDMR--LPVELTLWVDPHEVCCR 105 (105)
Q Consensus 81 gl~~~~l~--lP~e~tlWvDPgeVs~R 105 (105)
||++++|. ||+||||||||||||||
T Consensus 80 gl~~~~l~~~LP~eltlWvDPgeVs~R 106 (118)
T PF07742_consen 80 GLSYEDLRSLLPRELTLWVDPGEVSYR 106 (118)
T ss_dssp T--HHHHHHHS-TTEEEEEETTEEEEE
T ss_pred CCCHHHHHHhcchhcEEEECCCEEEEE
Confidence 99999999 99999999999999998
These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
>KOG4006|consensus
Back Show alignment and domain information
Probab=100.00 E-value=1.2e-36 Score=239.47 Aligned_cols=98 Identities=33% Similarity=0.705 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccceeEEEecCCCCCCHHHHHHHHHh
Q psy11249 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAV 80 (105)
Q Consensus 1 M~~EI~~av~Fl~~~l~~~~~~l~~~~i~~F~~~L~~~L~~ry~~HW~P~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~s 80 (105)
|+.||++|+||+++||+ +|||||++++|+++|+++|.+||++||||++|.||||||||. +..||+++.|++++
T Consensus 1 m~~ei~valnfvisyly---nklprrrv~ifgeele~~l~~k~~~hwypekp~kgs~~rcih----~~~d~vme~eiaea 73 (311)
T KOG4006|consen 1 MQLEIQVALNFVISYLY---NKLPRRRVNIFGEELERLLKKKFEGHWYPEKPKKGSGFRCIH----ETVDPVMESEIAEA 73 (311)
T ss_pred CcchHHHHHHHHHHHHh---ccCCccccchhHHHHHHHHHHhhcCccCCCCCCCccccchhc----ccccHHHHHHHHHh
Confidence 99999999999999999 799999999999999999999999999999999999999998 68999999999999
Q ss_pred CCCCcccC--CCCccEEEEcCCceeeC
Q psy11249 81 GMSYEDMR--LPVELTLWVDPHEVCCR 105 (105)
Q Consensus 81 gl~~~~l~--lP~e~tlWvDPgeVs~R 105 (105)
|+..+|+. +|.++.+||||++|++|
T Consensus 74 g~fisdvlrnlp~~lsv~idpFevslq 100 (311)
T KOG4006|consen 74 GVFISDVLRNLPKLLSVWIDPFEVSLQ 100 (311)
T ss_pred cCCHHHHHHhCcchhheeecchhhHHh
Confidence 99999998 99999999999999986
>KOG4006|consensus
Back Show alignment and domain information
Probab=99.91 E-value=3e-26 Score=180.66 Aligned_cols=104 Identities=35% Similarity=0.648 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccceeEEEecCCCCCCHHHHHHHHHh
Q psy11249 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAV 80 (105)
Q Consensus 1 M~~EI~~av~Fl~~~l~~~~~~l~~~~i~~F~~~L~~~L~~ry~~HW~P~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~s 80 (105)
|..||++|+.|+.++|+++ .+.....|+.|...|+..|.++|+.||+||+|++||+||||+||..--.|+.+.+++.++
T Consensus 66 me~eiaeag~fisdvlrnl-p~~lsv~idpFevslqi~ekg~yK~hw~~d~p~kG~~~rcirIn~~~npdaq~~~~i~~~ 144 (311)
T KOG4006|consen 66 MESEIAEAGVFISDVLRNL-PKLLSVWIDPFEVSLQIGEKGAYKVHWFPDKPSKGQAYRCIRINKSFNPDAQVFRPIGAS 144 (311)
T ss_pred HHHHHHHhcCCHHHHHHhC-cchhheeecchhhHHhhhhccceeeeecCCCCCCCchhhhHHHhhccCCchhhhhccccc
Confidence 7899999999999999997 568889999999999999999999999999999999999999998888899999999999
Q ss_pred CCCCcccCCCCccEEEEcCCceeeC
Q psy11249 81 GMSYEDMRLPVELTLWVDPHEVCCR 105 (105)
Q Consensus 81 gl~~~~l~lP~e~tlWvDPgeVs~R 105 (105)
+.+.+.+.+|.|+|+|+||.+||||
T Consensus 145 ~ss~s~~~lPtelt~wvdP~evs~r 169 (311)
T KOG4006|consen 145 NSSVSNLGLPTELTLWVDPIEVSTR 169 (311)
T ss_pred ccchhccCCCcccccccCceEEEee
Confidence 9999999999999999999999997
>cd01768 RA RA (Ras-associating) ubiquitin domain
Back Show alignment and domain information
Probab=91.40 E-value=0.5 Score=30.05 Aligned_cols=36 Identities=25% Similarity=0.648 Sum_probs=31.2
Q ss_pred CCCCCCCccceeEEEecCCCCCCHHHHHHHHHhCCCC
Q psy11249 48 FPEAPNRGQGYRCIRLNKNVKKDTILENAAKAVGMSY 84 (105)
Q Consensus 48 ~P~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~sgl~~ 84 (105)
|+.++ .|+.|++|+++.+....-++..|+.+.|++.
T Consensus 5 ~~~~~-~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~ 40 (87)
T cd01768 5 YPEDP-SGGTYKTLRVSKDTTAQDVIQQLLKKFGLDD 40 (87)
T ss_pred eCCcC-CCccEEEEEECCCCCHHHHHHHHHHHhCCcC
Confidence 34455 7999999999999999999999999999984
The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins
Back Show alignment and domain information
Probab=88.48 E-value=0.86 Score=30.58 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=29.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHHHhCCCCc
Q psy11249 55 GQGYRCIRLNKNVKKDTILENAAKAVGMSYE 85 (105)
Q Consensus 55 GsayRcIrin~~~~~Dp~l~~Aa~~sgl~~~ 85 (105)
|.-|+||-+..+.+++.+|.+|-.+-|++.+
T Consensus 15 gn~YKSIlltsqDktP~VI~ral~Khnl~~~ 45 (87)
T cd00153 15 GNLYKSILLTSQDKAPQVIRRAMEKHNLESE 45 (87)
T ss_pred cceEEEEEEecCCcCHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999765
This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
>smart00314 RA Ras association (RalGDS/AF-6) domain
Back Show alignment and domain information
Probab=85.08 E-value=2.3 Score=27.11 Aligned_cols=32 Identities=9% Similarity=0.347 Sum_probs=28.8
Q ss_pred CccceeEEEecCCCCCCHHHHHHHHHhCCCCc
Q psy11249 54 RGQGYRCIRLNKNVKKDTILENAAKAVGMSYE 85 (105)
Q Consensus 54 rGsayRcIrin~~~~~Dp~l~~Aa~~sgl~~~ 85 (105)
.++.|++|.++.+....-+|..|++..|++.+
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 47889999999999999999999999999854
RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []
Back Show alignment and domain information
Probab=84.23 E-value=2 Score=26.92 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=34.1
Q ss_pred CCCCCccceeEEEecCCCCCCHHHHHHHHHhCCCCcccCCCCccEEE
Q psy11249 50 EAPNRGQGYRCIRLNKNVKKDTILENAAKAVGMSYEDMRLPVELTLW 96 (105)
Q Consensus 50 ~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~sgl~~~~l~lP~e~tlW 96 (105)
....-|..|++|.|+.+....-+|..|++..|+ -.-|.++.||
T Consensus 10 ~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l----~~~~~~y~L~ 52 (93)
T PF00788_consen 10 GDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL----AEDPSDYCLV 52 (93)
T ss_dssp TTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT----SSSGGGEEEE
T ss_pred CCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC----CCCCCCEEEE
Confidence 344456689999999999999999999999999 2246677776
This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
>COG3112 Uncharacterized protein conserved in bacteria [Function unknown]
Back Show alignment and domain information
Probab=82.54 E-value=1.4 Score=31.01 Aligned_cols=38 Identities=34% Similarity=0.426 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhCCCCcccC-CCCccEEEEcCCceeeC
Q psy11249 67 VKKDTILENAAKAVGMSYEDMR-LPVELTLWVDPHEVCCR 105 (105)
Q Consensus 67 ~~~Dp~l~~Aa~~sgl~~~~l~-lP~e~tlWvDPgeVs~R 105 (105)
.++|.+ .+||...-=+..++. -..|.|||+|-.||.+|
T Consensus 37 akl~~v-l~~a~~~~~s~~~~~~~G~Eytl~~~geEVmVr 75 (121)
T COG3112 37 AKLDEV-LQAADTLKGSEREWQLAGHEYTLWMDGEEVMVR 75 (121)
T ss_pred HHHHHH-HHHHHHhhcChhhheecCcEEEEEEcCceeeee
Confidence 345554 445555444444666 68999999999999887
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Back Show alignment and domain information
Probab=80.69 E-value=4.7 Score=25.86 Aligned_cols=59 Identities=14% Similarity=0.343 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHHHhh----cCCCCCCCCCCCccceeEEEecCCCCCCHHHHHHHHHhCCCCccc
Q psy11249 23 CDADQLEAFKTKLAELLNDR----FANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAVGMSYEDM 87 (105)
Q Consensus 23 l~~~~i~~F~~~L~~~L~~r----y~~HW~P~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~sgl~~~~l 87 (105)
++.+++.....+..+.+.+- |...|.- |.+|.-| ||..- +--..|.++++++|++.+.+
T Consensus 12 it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~--~d~~k~~-Cly~A---p~~eaV~~~~~~aG~p~d~I 74 (77)
T PF14026_consen 12 ITAEDLAAAHAKSCAVQAEMPGVQWLRSYVS--EDDGKIF-CLYEA---PDEEAVREHARRAGLPADRI 74 (77)
T ss_pred CCHHHHHHHHHHhHHHHhhcCCeEEEEEEEe--cCCCeEE-EEEEC---CCHHHHHHHHHHcCCCcceE
Confidence 88899999999999999888 8888873 4466666 88872 23356888888899988754
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value
Query
105
d3e9va1 120
d.370.1.1 (A:9-128) NGF-inducible anti-proliferati
8e-41
d2z15a1 117
d.370.1.1 (A:10-126) TOB1, N-terminal domain {Huma
3e-40
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]} Length = 120
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: BTG domain-like
superfamily: BTG domain-like
family: BTG domain-like
domain: NGF-inducible anti-proliferative protein PC3 (BTG2)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 129 bits (325), Expect = 8e-41
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
M +I+AAV FL+ L+ R+ +L+ F L E L + + +HWFPE P++G GYRC
Sbjct: 2 MLPEIAAAVGFLSSLL-RTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRC 60
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
IR+N K D I+ A +G+S + LP ELTLWVDP+EV R
Sbjct: 61 IRINH--KMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYR 105
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 117
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: BTG domain-like
superfamily: BTG domain-like
family: BTG domain-like
domain: TOB1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 127 bits (321), Expect = 3e-40
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
MQ +I A+ F+ + ++ F +L LL ++ HW+PE P +G G+RC
Sbjct: 1 MQLEIQVALNFIISYL---YNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRC 57
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
I + + K D ++E A+K G+ +D+R LP +L++W+DP EV +
Sbjct: 58 IHIGE--KVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQ 102
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 105
d3e9va1 120
NGF-inducible anti-proliferative protein PC3 (BTG2
100.0
d2z15a1 117
TOB1, N-terminal domain {Human (Homo sapiens) [Tax
100.0
d1rlfa_ 90
RalGDS-like factor, Rlf {Mouse (Mus musculus) [Tax
87.07
d1lfda_ 87
Ral guanosine-nucleotide exchange factor, RalGDS {
80.84
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: BTG domain-like
superfamily: BTG domain-like
family: BTG domain-like
domain: NGF-inducible anti-proliferative protein PC3 (BTG2)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-55 Score=305.59 Aligned_cols=102 Identities=45% Similarity=0.853 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccceeEEEecCCCCCCHHHHHHHHHh
Q psy11249 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAV 80 (105)
Q Consensus 1 M~~EI~~av~Fl~~~l~~~~~~l~~~~i~~F~~~L~~~L~~ry~~HW~P~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~s 80 (105)
|++||++|||||+|+|+++ +++|+++++.|+++|+++|.+||++||||++|+|||||||||| ++++||+|.+||.+|
T Consensus 2 M~~EI~~av~Fl~~ll~~~-~~l~~~~~~~F~~~L~~~L~~~y~~HWyp~~P~kGsayRCIri--n~~~Dp~i~~Aa~~s 78 (120)
T d3e9va1 2 MLPEIAAAVGFLSSLLRTR-GCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRI--NHKMDPIISRVASQI 78 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHTTSCCTTSTTTTHHHHCEEC--SSSCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCCcEEEEEEe--CCCCChHHHHHHHHh
Confidence 9999999999999999875 7899999999999999999999999999999999999999999 578999999999999
Q ss_pred CCCCcccC--CCCccEEEEcCCceeeC
Q psy11249 81 GMSYEDMR--LPVELTLWVDPHEVCCR 105 (105)
Q Consensus 81 gl~~~~l~--lP~e~tlWvDPgeVs~R 105 (105)
||++++|. ||+||||||||||||||
T Consensus 79 Gl~~~~l~~~LP~eltiWvDP~eVs~R 105 (120)
T d3e9va1 79 GLSQPQLHQLLPSELTLWVDPYEVSYR 105 (120)
T ss_dssp TCCHHHHHHHSCTTEEEEEETTEEEEE
T ss_pred CCCHHHHHHhCChheEEEECCCEEEEE
Confidence 99999998 99999999999999998
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a+b)
fold: BTG domain-like
superfamily: BTG domain-like
family: BTG domain-like
domain: TOB1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-55 Score=304.65 Aligned_cols=100 Identities=35% Similarity=0.792 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccceeEEEecCCCCCCHHHHHHHHHh
Q psy11249 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAV 80 (105)
Q Consensus 1 M~~EI~~av~Fl~~~l~~~~~~l~~~~i~~F~~~L~~~L~~ry~~HW~P~~P~rGsayRcIrin~~~~~Dp~l~~Aa~~s 80 (105)
|++||++|||||+++|+ ++||+++++.|+++|+++|.+||++||||++|+||||||||+| ++++||+|.+||.+|
T Consensus 1 M~~EI~~av~Fl~~~l~---~kl~~~~~~~F~~~L~~~L~~~y~~HWyp~~P~kGsayRCIri--n~~~Dp~i~~Aa~~s 75 (117)
T d2z15a1 1 MQLEIQVALNFIISYLY---NKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHI--GEKVDPVIEQASKES 75 (117)
T ss_dssp SHHHHHHHHHHHHTTTT---TTSCHHHHHHHHHHHHHHHHHHHTTCCCTTCTTTTHHHHCEEE--SSSBCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEEEE--CCCCCHHHHHHHHHh
Confidence 99999999999999998 7899999999999999999999999999999999999999999 589999999999999
Q ss_pred CCCCcccC--CCCccEEEEcCCceeeC
Q psy11249 81 GMSYEDMR--LPVELTLWVDPHEVCCR 105 (105)
Q Consensus 81 gl~~~~l~--lP~e~tlWvDPgeVs~R 105 (105)
|+++++|. ||+||||||||||||||
T Consensus 76 Gl~~~~l~~~LP~eltiWvDP~eVs~R 102 (117)
T d2z15a1 76 GLDIDDVRGNLPQDLSVWIDPFEVSYQ 102 (117)
T ss_dssp TCCHHHHHHHSCTTEEEEEETTEEEEE
T ss_pred CCCHHHHHHhCCcccEEEECCCeEEEE
Confidence 99999995 99999999999999998
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus musculus) [TaxId: 10090]}
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class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: RalGDS-like factor, Rlf
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.07 E-value=0.35 Score=30.09 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCCccceeEEEecCCCCCCHHHHHHHHHhCCCCc
Q psy11249 52 PNRGQGYRCIRLNKNVKKDTILENAAKAVGMSYE 85 (105)
Q Consensus 52 P~rGsayRcIrin~~~~~Dp~l~~Aa~~sgl~~~ 85 (105)
...|+-|+||.+..+.+++.+|.+|-..-|++.+
T Consensus 15 ~~~gn~YKSIlltsqDktP~VI~rAl~Kh~l~~~ 48 (90)
T d1rlfa_ 15 GEDGSVYKSILVTSQDKAPSVISRVLKKNNRDSA 48 (90)
T ss_dssp SSSCCSCCEEEEETTCCCTTHHHHHHHHTTTTSC
T ss_pred CCCCcEEEEEEEecCCcCHHHHHHHHHHhCCCCC
Confidence 4589999999999999999999999999999765
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor, RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Ral guanosine-nucleotide exchange factor, RalGDS
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.84 E-value=0.74 Score=28.36 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCccceeEEEecCCCCCCHHHHHHHHHhCCCCc
Q psy11249 53 NRGQGYRCIRLNKNVKKDTILENAAKAVGMSYE 85 (105)
Q Consensus 53 ~rGsayRcIrin~~~~~Dp~l~~Aa~~sgl~~~ 85 (105)
..|+-|+||.+..+.+++.+|.+|-..-|++.+
T Consensus 13 ~~g~~YKSIllt~qDktP~VI~~Am~Kh~l~~d 45 (87)
T d1lfda_ 13 DNGNMYKSILVTSQDKAPTVIRKAMDKHNLDED 45 (87)
T ss_dssp CSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEEEEecCCcCHHHHHHHHHHhCCCcC
Confidence 369999999999899999999999999999754