Psyllid ID: psy11252


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
MRLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIKV
cccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHcccccccccHHHHccccccccccccccccccEEEEEEEEEc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccc
mrlgsgcgkdqredkklppedvfgfsslgftekphehhlsvyvpttysyfHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNkegirwrhiefsdntlclqlvegkpngllcvlddqakrkfggtgvhrnpgvfTVASLILKIKV
mrlgsgcgkdqredkklppedVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKfggtgvhrnpgvftvaslilkikv
MRLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIKV
**********************FGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKI**
*R*******D***DKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIKV
***************KLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIKV
MRLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIKV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query146 2.2.26 [Sep-21-2011]
Q9Z1N3 2626 Unconventional myosin-IXa yes N/A 0.486 0.027 0.563 1e-20
Q8C170 2542 Unconventional myosin-IXa no N/A 0.486 0.027 0.563 1e-20
Q13459 2157 Unconventional myosin-IXb yes N/A 0.452 0.030 0.590 3e-20
Q9QY06 2114 Unconventional myosin-IXb no N/A 0.452 0.031 0.575 5e-20
B2RTY4 2548 Unconventional myosin-IXa no N/A 0.486 0.027 0.563 5e-20
Q63358 1980 Unconventional myosin-IXb no N/A 0.452 0.033 0.575 7e-20
Q9QZZ4 3511 Unconventional myosin-XV no N/A 0.582 0.024 0.511 2e-19
Q9UKN7 3530 Unconventional myosin-XV no N/A 0.582 0.024 0.511 3e-19
Q9U1M8 2357 Myosin-I heavy chain OS=D yes N/A 0.458 0.028 0.552 2e-18
P32492 1471 Myosin-4 OS=Saccharomyces yes N/A 0.527 0.052 0.543 7e-18
>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1 Back     alignment and function desciption
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 55/71 (77%)

Query: 49  YFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 108
           Y ++ FEQ CIN+ANE LQ+YFNQH+F+ EQEEY  EGI W +I++ DNT C+ L+  KP
Sbjct: 544 YENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRTEGISWHNIDYIDNTCCINLISKKP 603

Query: 109 NGLLCVLDDQA 119
            GLL +LD+++
Sbjct: 604 TGLLHLLDEES 614




Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Regulates Rho by stimulating it's GTPase activity in neurons, has a role in the regulation of neuronal morphology and function.
Rattus norvegicus (taxid: 10116)
>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2 Back     alignment and function description
>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3 Back     alignment and function description
>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2 Back     alignment and function description
>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2 Back     alignment and function description
>sp|Q63358|MYO9B_RAT Unconventional myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1 SV=1 Back     alignment and function description
>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2 Back     alignment and function description
>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2 Back     alignment and function description
>sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium discoideum GN=myoI PE=1 SV=1 Back     alignment and function description
>sp|P32492|MYO4_YEAST Myosin-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MYO4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
270002356 2021 hypothetical protein TcasGA2_TC001372 [T 0.534 0.038 0.622 3e-28
189234985 1843 PREDICTED: similar to myosin-rhogap prot 0.534 0.042 0.622 3e-28
328701263 1931 PREDICTED: myosin-IXb isoform 2 [Acyrtho 0.534 0.040 0.612 3e-27
328701265 1863 PREDICTED: myosin-IXb isoform 3 [Acyrtho 0.534 0.041 0.612 3e-27
328701269 1847 PREDICTED: myosin-IXb isoform 1 [Acyrtho 0.534 0.042 0.612 3e-27
328701267 1776 PREDICTED: myosin-IXb isoform 4 [Acyrtho 0.534 0.043 0.612 3e-27
242011074 783 myosin IIIB, putative [Pediculus humanus 0.472 0.088 0.816 4e-27
357623270 1062 hypothetical protein KGM_18974 [Danaus p 0.534 0.073 0.622 8e-27
427791915 1463 Putative myosin class i heavy chain, par 0.623 0.062 0.548 2e-26
332022806 2287 Myosin-IXa [Acromyrmex echinatior] 0.472 0.030 0.746 1e-25
>gi|270002356|gb|EEZ98803.1| hypothetical protein TcasGA2_TC001372 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 69/98 (70%), Gaps = 20/98 (20%)

Query: 21  DVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQE 80
           D+FGF   G                     ++ FEQLCINYANEHLQYYFNQHVF+YEQE
Sbjct: 511 DIFGFEDFGL--------------------NNSFEQLCINYANEHLQYYFNQHVFKYEQE 550

Query: 81  EYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQ 118
           EY KEGIRW +I+F DNT CLQL+EGKPNGLLC+LDDQ
Sbjct: 551 EYRKEGIRWNNIDFMDNTGCLQLIEGKPNGLLCLLDDQ 588




Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234985|ref|XP_968193.2| PREDICTED: similar to myosin-rhogap protein, myr [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328701263|ref|XP_003241546.1| PREDICTED: myosin-IXb isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701265|ref|XP_003241547.1| PREDICTED: myosin-IXb isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701269|ref|XP_001944223.2| PREDICTED: myosin-IXb isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701267|ref|XP_003241548.1| PREDICTED: myosin-IXb isoform 4 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242011074|ref|XP_002426282.1| myosin IIIB, putative [Pediculus humanus corporis] gi|212510345|gb|EEB13544.1| myosin IIIB, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|357623270|gb|EHJ74495.1| hypothetical protein KGM_18974 [Danaus plexippus] Back     alignment and taxonomy information
>gi|427791915|gb|JAA61409.1| Putative myosin class i heavy chain, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|332022806|gb|EGI63079.1| Myosin-IXa [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
UNIPROTKB|E1BS57 2001 Gga.50857 "Uncharacterized pro 0.452 0.032 0.590 3.7e-20
UNIPROTKB|E1C471 2031 Gga.50857 "Uncharacterized pro 0.452 0.032 0.590 3.8e-20
UNIPROTKB|E1C470 2140 Gga.50857 "Uncharacterized pro 0.452 0.030 0.590 4.3e-20
WB|WBGene00002040 1880 hum-7 [Caenorhabditis elegans 0.452 0.035 0.651 6.4e-20
UNIPROTKB|F1S9U2548 F1S9U2 "Uncharacterized protei 0.452 0.120 0.590 3.8e-19
UNIPROTKB|H3BMM1 1301 MYO9A "Unconventional myosin-I 0.671 0.075 0.461 4.9e-19
UNIPROTKB|G3MXH1 1104 Bt.27781 "Uncharacterized prot 0.486 0.064 0.563 6.4e-19
UNIPROTKB|H3BRD5 2396 MYO9A "Unconventional myosin-I 0.671 0.040 0.461 1e-18
UNIPROTKB|B2RTY4 2548 MYO9A "Unconventional myosin-I 0.671 0.038 0.461 1.1e-18
UNIPROTKB|G3MXE8 1951 Bt.27781 "Uncharacterized prot 0.486 0.036 0.563 1.3e-18
UNIPROTKB|E1BS57 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 238 (88.8 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
 Identities = 39/66 (59%), Positives = 50/66 (75%)

Query:    54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 113
             FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W  I+++DN  C+ L+  KP GL  
Sbjct:   531 FEQFCINYANEQLQYYFNQHIFKLEQEEYKSEGITWHDIDYTDNVACIHLISKKPTGLFY 590

Query:   114 VLDDQA 119
             +LD+++
Sbjct:   591 LLDEES 596


GO:0003774 "motor activity" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0016459 "myosin complex" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|E1C471 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C470 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00002040 hum-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9U2 F1S9U2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|H3BMM1 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MXH1 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H3BRD5 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B2RTY4 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3MXE8 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9U1M8MYOI_DICDINo assigned EC number0.55220.45890.0284yesN/A
P32492MYO4_YEASTNo assigned EC number0.54320.52730.0523yesN/A
Q9Z1N3MYO9A_RATNo assigned EC number0.56330.48630.0270yesN/A
Q13459MYO9B_HUMANNo assigned EC number0.59090.45200.0305yesN/A
O74805MYO51_SCHPONo assigned EC number0.51850.52730.0523yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
smart00242 677 smart00242, MYSc, Myosin 2e-33
cd01385 692 cd01385, MYSc_type_IX, Myosin motor domain, type I 3e-33
cd00124 679 cd00124, MYSc, Myosin motor domain 2e-30
pfam00063 679 pfam00063, Myosin_head, Myosin head (motor domain) 4e-28
cd01381 671 cd01381, MYSc_type_VII, Myosin motor domain, type 5e-28
cd01384 674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 6e-28
cd01380 691 cd01380, MYSc_type_V, Myosin motor domain, type V 2e-27
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 1e-25
cd01387 677 cd01387, MYSc_type_XV, Myosin motor domain, type X 2e-25
cd01383 677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 1e-24
cd01379 653 cd01379, MYSc_type_III, Myosin motor domain, type 7e-22
cd01377 693 cd01377, MYSc_type_II, Myosin motor domain, type I 1e-21
cd01378 674 cd01378, MYSc_type_I, Myosin motor domain, type I 2e-21
cd01382 717 cd01382, MYSc_type_VI, Myosin motor domain, type V 5e-21
PTZ00014 821 PTZ00014, PTZ00014, myosin-A; Provisional 5e-11
cd01386 767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 3e-04
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
 Score =  123 bits (310), Expect = 2e-33
 Identities = 41/68 (60%), Positives = 52/68 (76%)

Query: 54  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 113
           FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W  I+F DN  C+ L+E KP G+L 
Sbjct: 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446

Query: 114 VLDDQAKR 121
           +LD++ + 
Sbjct: 447 LLDEECRF 454


Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 146
PTZ00014 821 myosin-A; Provisional 100.0
cd01384 674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
cd01381 671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01383 677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01387 677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
COG5022 1463 Myosin heavy chain [Cytoskeleton] 100.0
cd01378 674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01377 693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
cd01379 653 MYSc_type_III Myosin motor domain, type III myosin 100.0
cd01382 717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
cd01385 692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
cd01380 691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
smart00242 677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
cd00124 679 MYSc Myosin motor domain. This catalytic (head) do 100.0
cd01386 767 MYSc_type_XVIII Myosin motor domain, type XVIII my 100.0
KOG0164|consensus 1001 100.0
PF00063 689 Myosin_head: Myosin head (motor domain); InterPro: 99.98
KOG0161|consensus 1930 99.97
KOG0163|consensus 1259 99.96
KOG0160|consensus 862 99.95
KOG0162|consensus 1106 99.95
KOG4229|consensus 1062 99.91
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
Probab=100.00  E-value=9e-38  Score=287.11  Aligned_cols=112  Identities=29%  Similarity=0.400  Sum_probs=107.3

Q ss_pred             CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252          2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE   81 (146)
Q Consensus         2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee   81 (146)
                      |||+.+.+......+||||||||||+|+.                     |+|||||||||||+||++|++++|+.||++
T Consensus       449 ~IN~~l~~~~~~~~~IGiLDI~GFE~f~~---------------------NSfEQLcINy~NEkLQq~F~~~vF~~Eqee  507 (821)
T PTZ00014        449 NLNATIEPPGGFKVFIGMLDIFGFEVFKN---------------------NSLEQLFINITNEMLQKNFVDIVFERESKL  507 (821)
T ss_pred             HHHHHhcCCcccCceEEEEecccccccCc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999998888889999999999999995                     999999999999999999999999999999


Q ss_pred             hhhcCceeeecccCChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhhc
Q psy11252         82 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIK  145 (146)
Q Consensus        82 y~~EgI~~~~i~~~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~~  145 (146)
                      |.+|||+|..++|.||++|+|||++||.|||+||||||++|+|           ||++|++||.
T Consensus       508 Y~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~-----------tD~~f~~kl~  560 (821)
T PTZ00014        508 YKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGG-----------TDEKFVSSCN  560 (821)
T ss_pred             HHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCC-----------CHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987           8899988873



>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
1qvi_A 840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 2e-16
4db1_A 783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 3e-16
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 3e-16
2w4g_M 840 Isometrically Contracting Insect Asynchronous Fligh 5e-16
2ec6_A 838 Placopecten Striated Muscle Myosin Ii Length = 838 6e-16
2os8_A 840 Rigor-Like Structures Of Muscle Myosins Reveal Key 6e-16
1w8j_A 766 Crystal Structure Of Myosin V Motor Domain - Nucleo 6e-16
1oe9_A 795 Crystal Structure Of Myosin V Motor With Essential 6e-16
1kk7_A 837 Scallop Myosin In The Near Rigor Conformation Lengt 8e-16
1b7t_A 835 Myosin Digested By Papain Length = 835 8e-16
1dfl_A 831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 9e-16
1dfk_A 830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 9e-16
1g8x_A 1010 Structure Of A Genetically Engineered Molecular Mot 2e-15
1mmg_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-15
2xo8_A 776 Crystal Structure Of Myosin-2 In Complex With Tribr 2e-15
1mmd_A 762 Truncated Head Of Myosin From Dictyostelium Discoid 2e-15
1jwy_A 776 Crystal Structure Of The Dynamin A Gtpase Domain Co 2e-15
2aka_A 776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 2e-15
1mma_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-15
1d0x_A 761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 2e-15
2y0r_X 758 Structural Basis For The Allosteric Interference Of 2e-15
3mnq_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 2e-15
2jhr_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 2e-15
1w9k_A 770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 2e-15
1mmn_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-15
3i5g_A 839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 2e-15
1fmv_A 761 Crystal Structure Of The Apo Motor Domain Of Dictyo 2e-15
1w9l_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 2e-15
1w9i_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 2e-15
2xel_A 776 Molecular Mechanism Of Pentachloropseudilin Mediate 2e-15
1w9j_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 2e-15
1yv3_A 762 The Structural Basis Of Blebbistatin Inhibition And 3e-15
2y9e_X 758 Structural Basis For The Allosteric Interference Of 3e-15
3myh_X 762 Insights Into The Importance Of Hydrogen Bonding In 3e-15
2x9h_A 695 Crystal Structure Of Myosin-2 Motor Domain In Compl 4e-15
3mkd_A 692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 4e-15
2mys_A 843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 4e-15
1m8q_A 840 Molecular Models Of Averaged Rigor Crossbridges Fro 5e-15
1lvk_A 762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 6e-15
3dtp_B 973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 7e-14
3dtp_A 971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 7e-14
1br1_A 820 Smooth Muscle Myosin Motor Domain-Essential Light C 8e-14
1br2_A 791 Smooth Muscle Myosin Motor Domain Complexed With Mg 8e-14
3j04_A 909 Em Structure Of The Heavy Meromyosin Subfragment Of 1e-13
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 1e-13
4dbr_A 786 Myosin Vi D179y (md) Pre-powerstroke State Length = 1e-13
2v26_A 784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 1e-13
4e7s_A 798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 1e-13
4e7z_A 798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 1e-13
2ycu_A 995 Crystal Structure Of Human Non Muscle Myosin 2c In 2e-13
2x51_A 789 M6 Delta Insert1 Length = 789 2e-13
2bki_A 858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 2e-13
2vas_A 788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 2e-13
4dbp_A 814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 2e-13
2bkh_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 2e-13
3l9i_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 2e-13
4dbq_A 788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 2e-13
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 2e-13
1lkx_A 697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 1e-12
4a7f_C 697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 1e-12
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure

Iteration: 1

Score = 81.6 bits (200), Expect = 2e-16, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 2/66 (3%) Query: 54 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 112 FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530 Query: 113 CVLDDQ 118 +L+++ Sbjct: 531 SILEEE 536
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 1e-35
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 1e-34
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-34
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 2e-33
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 4e-32
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 7e-32
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 2e-31
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 3e-31
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 3e-31
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 4e-31
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
 Score =  128 bits (324), Expect = 1e-35
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 54  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 113
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523

Query: 114 VLDDQAKR 121
           +LD++ + 
Sbjct: 524 ILDEENRL 531


>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 100.0
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 100.0
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 100.0
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 100.0
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 100.0
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 100.0
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 100.0
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 100.0
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 100.0
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 100.0
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
Probab=100.00  E-value=3.9e-39  Score=291.09  Aligned_cols=112  Identities=32%  Similarity=0.519  Sum_probs=107.2

Q ss_pred             CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252          2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE   81 (146)
Q Consensus         2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee   81 (146)
                      |||+++.+......+||||||||||+|+.                     |+|||||||||||+||++|++++|+.||+|
T Consensus       367 ~IN~~l~~~~~~~~~IGvLDI~GFE~f~~---------------------NsFEQlcINy~NEkLQq~F~~~~f~~Eqee  425 (697)
T 1lkx_A          367 KINTIINCTTEKGPVIGILDIYGFEVFQN---------------------NSFEQLNINFCNEKLQQLFIELTLKSEQEE  425 (697)
T ss_dssp             HHHHHHCCCSCCCCEEEEEECCCCCCCSS---------------------BCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHhhcCCCCCCceeEEeeccccccccCc---------------------CCHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            78999988877889999999999999996                     999999999999999999999999999999


Q ss_pred             hhhcCceeeecccCChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhhc
Q psy11252         82 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKIK  145 (146)
Q Consensus        82 y~~EgI~~~~i~~~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~~  145 (146)
                      |.+|||+|.+++|.||++|+|||++||.|||+||||||++|++           ||++|++|+.
T Consensus       426 Y~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~-----------tD~~f~~kl~  478 (697)
T 1lkx_A          426 YVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKS-----------TDQTFLDSIC  478 (697)
T ss_dssp             HHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTC-----------CHHHHHHHHH
T ss_pred             HHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCC-----------ChHHHHHHHH
Confidence            9999999999999999999999999999999999999999988           8999999873



>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 146
d1lkxa_ 684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 4e-17
d2mysa2 794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 2e-16
d1kk8a2 789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 3e-16
d1br2a2 710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 9e-16
d1w7ja2 730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 4e-15
d1d0xa2 712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 5e-14
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
 Score = 74.7 bits (183), Expect = 4e-17
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query: 48  SYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 107
            + ++ FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E K
Sbjct: 384 VFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKK 443

Query: 108 PNGLLCVLDDQAKRKFG 124
           P GL+ +LD+       
Sbjct: 444 PIGLISLLDEACLIAKS 460


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 100.0
d1w7ja2 730 Myosin S1, motor domain {Chicken (Gallus gallus), 99.98
d1d0xa2 712 Myosin S1, motor domain {Dictyostelium discoideum 99.97
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.97
d1br2a2 710 Myosin S1, motor domain {Chicken (Gallus gallus), 99.97
d1kk8a2 789 Myosin S1, motor domain {Bay scallop (Aequipecten 99.97
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=100.00  E-value=2.4e-34  Score=257.05  Aligned_cols=111  Identities=32%  Similarity=0.532  Sum_probs=106.8

Q ss_pred             CcCCCCCCCCCCCCcccceecCCCcccCcCCCCCcccccccccccccccccchhhhhhccccchhhhHHHhhhhhhhHhh
Q psy11252          2 RLGSGCGKDQREDKKLPPEDVFGFSSLGFTEKPHEHHLSVYVPTTYSYFHHCFEQLCINYANEHLQYYFNQHVFQYEQEE   81 (146)
Q Consensus         2 ~in~~~~~~~~~~~~IgiLDi~GFE~f~~~~~~~~~~~~~~~~~~~~~~~N~feqlciN~~nE~Lq~~~~~~~f~~e~ee   81 (146)
                      |||+.+.+......+||||||||||+|+.                     |+|||||||||||+||++|++++|..++++
T Consensus       359 ~IN~~L~~~~~~~~~IgiLDifGFE~f~~---------------------NsfEQLcINyaNEkLq~~f~~~if~~e~~~  417 (684)
T d1lkxa_         359 KINTIINCTTEKGPVIGILDIYGFEVFQN---------------------NSFEQLNINFCNEKLQQLFIELTLKSEQEE  417 (684)
T ss_dssp             HHHHHHCCCSCCCCEEEEEECCCCCCCSS---------------------BCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hhhhhcCCCCcccceEEEeeccCCcCCCC---------------------CcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            68999998888889999999999999995                     999999999999999999999999999999


Q ss_pred             hhhcCceeeecccCChHHHHHHHhcCCCcccccchhhhcccCCCCCCcCCCCcccHHHHHHhh
Q psy11252         82 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKRKFGGTGVHRNPGVFTVASLILKI  144 (146)
Q Consensus        82 y~~EgI~~~~i~~~dn~~~ldLi~~kp~GlL~lLDee~~~p~g~~~~~~~~~~~~~~~~~~~~  144 (146)
                      |..|||+|..++|.||++|++||+++|.|||++|||||++|+|           ||++|++|+
T Consensus       418 Y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~-----------tD~~~l~kl  469 (684)
T d1lkxa_         418 YVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKS-----------TDQTFLDSI  469 (684)
T ss_dssp             HHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTC-----------CHHHHHHHH
T ss_pred             HHhccCCCCCCCcCCchHHHHHHHhccchHHHHhHHHhcCCCC-----------chHHHHHHH
Confidence            9999999999999999999999999999999999999999987           899999887



>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure