Psyllid ID: psy11361

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEPHKKKISKKKLARAKEKMLRE
ccccccccccccccEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHc
cccEccccccccHHHHccccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccHHcccEEEcccccccccHHHHHHEccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
mgryskeprnptksckargsnlrvhfkNTRETAKTISKMPLRRAIKFLKNVKDQlecvpfrrynggvgrcaqakqwgttqgrwprkSADFLLQLLKNAesnadyrgldtdRLVIEHIQvnraprlrrrtyrahgnyrgldtDRLVIEHIqvnpymsspchIEVILSERervvakpredephkkkISKKKLARAKEKMLRE
mgryskeprnptksckargsnlrvhfkntretaktiskmplrRAIKFLKNVKDQLECVPFrrynggvgrcaqakqwgttqgrwprKSADFLLQLLKNAESNadyrgldtdrlviehiqvnraprlrrrtyrahgnyrgldtdrLVIEHIQvnpymsspCHIEVILSERERvvakpredephkkkiskkklaRAKEKMLRE
MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNraprlrrrtyrAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEPHkkkiskkklarakekMLRE
***********************************ISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILS**********************************
*GRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSE*********************************
****************ARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERV*****************************
****************ARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPRE*E*********************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEPHKKKISKKKLARAKEKMLRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query200 2.2.26 [Sep-21-2011]
Q0PXV9185 60S ribosomal protein L17 N/A N/A 0.925 1.0 0.915 1e-97
A2I3Y6185 60S ribosomal protein L17 N/A N/A 0.925 1.0 0.725 3e-78
Q5MGD1187 60S ribosomal protein L17 N/A N/A 0.925 0.989 0.722 9e-76
Q5MIR6186 60S ribosomal protein L17 N/A N/A 0.92 0.989 0.723 4e-75
Q1HR65186 60S ribosomal protein L17 N/A N/A 0.92 0.989 0.723 6e-75
Q5UAS2187 60S ribosomal protein L17 N/A N/A 0.925 0.989 0.722 6e-75
A8CAG3186 60S ribosomal protein L17 N/A N/A 0.92 0.989 0.718 8e-75
Q29IM3186 60S ribosomal protein L17 yes N/A 0.92 0.989 0.708 8e-73
Q6XJ13186 60S ribosomal protein L17 N/A N/A 0.92 0.989 0.703 3e-72
Q9W3W8186 60S ribosomal protein L17 yes N/A 0.92 0.989 0.698 7e-72
>sp|Q0PXV9|RL17_DIACI 60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1 Back     alignment and function desciption
 Score =  355 bits (911), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/200 (91%), Positives = 185/200 (92%), Gaps = 15/200 (7%)

Query: 1   MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
           MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF
Sbjct: 1   MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60

Query: 61  RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120
           RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN
Sbjct: 61  RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120

Query: 121 RAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEP 180
           RAPRLRRRTYRAHG               ++NPYMSSPCHIEVILSERERVVAKPREDEP
Sbjct: 121 RAPRLRRRTYRAHG---------------RINPYMSSPCHIEVILSERERVVAKPREDEP 165

Query: 181 HKKKISKKKLARAKEKMLRE 200
           HKKKISKKKLARAKEKMLRE
Sbjct: 166 HKKKISKKKLARAKEKMLRE 185

Diaphorina citri (taxid: 121845)
>sp|A2I3Y6|RL17_MACHI 60S ribosomal protein L17 OS=Maconellicoccus hirsutus GN=RpL17 PE=2 SV=1 Back     alignment and function description
>sp|Q5MGD1|RL17_LONON 60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1 Back     alignment and function description
>sp|Q5MIR6|RL17_AEDAL 60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1 Back     alignment and function description
>sp|Q1HR65|RL17_AEDAE 60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1 Back     alignment and function description
>sp|Q5UAS2|RL17_BOMMO 60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1 Back     alignment and function description
>sp|A8CAG3|RL17_PHLPP 60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1 Back     alignment and function description
>sp|Q29IM3|RL17_DROPS 60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1 Back     alignment and function description
>sp|Q6XJ13|RL17_DROYA 60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1 Back     alignment and function description
>sp|Q9W3W8|RL17_DROME 60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
122103768185 RecName: Full=60S ribosomal protein L17 0.925 1.0 0.915 6e-96
193617759185 PREDICTED: 60S ribosomal protein L17-lik 0.925 1.0 0.74 3e-78
242011044185 60S ribosomal protein L17, putative [Ped 0.925 1.0 0.75 1e-77
239788050185 ACYPI008181 [Acyrthosiphon pisum] 0.925 1.0 0.735 3e-77
62083465185 ribosomal protein L17 isoform B [Lysiphl 0.925 1.0 0.71 5e-77
171769787185 RecName: Full=60S ribosomal protein L17 0.925 1.0 0.725 2e-76
307181831185 60S ribosomal protein L17 [Camponotus fl 0.925 1.0 0.745 1e-75
389608195187 ribosomal protein L17 [Papilio xuthus] g 0.925 0.989 0.732 3e-75
195396671186 GJ16610 [Drosophila virilis] gi|19414672 0.92 0.989 0.733 2e-74
332029159185 60S ribosomal protein L17 [Acromyrmex ec 0.925 1.0 0.745 2e-74
>gi|122103768|sp|Q0PXV9.1|RL17_DIACI RecName: Full=60S ribosomal protein L17 gi|110671498|gb|ABG82000.1| putative ribosomal protein L17 [Diaphorina citri] Back     alignment and taxonomy information
 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 183/200 (91%), Positives = 185/200 (92%), Gaps = 15/200 (7%)

Query: 1   MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
           MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF
Sbjct: 1   MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60

Query: 61  RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120
           RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN
Sbjct: 61  RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120

Query: 121 RAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEP 180
           RAPRLRRRTYRAHG               ++NPYMSSPCHIEVILSERERVVAKPREDEP
Sbjct: 121 RAPRLRRRTYRAHG---------------RINPYMSSPCHIEVILSERERVVAKPREDEP 165

Query: 181 HKKKISKKKLARAKEKMLRE 200
           HKKKISKKKLARAKEKMLRE
Sbjct: 166 HKKKISKKKLARAKEKMLRE 185

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193617759|ref|XP_001943088.1| PREDICTED: 60S ribosomal protein L17-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242011044|ref|XP_002426267.1| 60S ribosomal protein L17, putative [Pediculus humanus corporis] gi|212510330|gb|EEB13529.1| 60S ribosomal protein L17, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|239788050|dbj|BAH70721.1| ACYPI008181 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|62083465|gb|AAX62457.1| ribosomal protein L17 isoform B [Lysiphlebus testaceipes] Back     alignment and taxonomy information
>gi|171769787|sp|A2I3Y6.1|RL17_MACHI RecName: Full=60S ribosomal protein L17 gi|121543765|gb|ABM55555.1| putative 60S ribosomal protein L17 [Maconellicoccus hirsutus] Back     alignment and taxonomy information
>gi|307181831|gb|EFN69274.1| 60S ribosomal protein L17 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|389608195|dbj|BAM17709.1| ribosomal protein L17 [Papilio xuthus] gi|389610645|dbj|BAM18934.1| ribosomal protein L17 [Papilio polytes] Back     alignment and taxonomy information
>gi|195396671|ref|XP_002056954.1| GJ16610 [Drosophila virilis] gi|194146721|gb|EDW62440.1| GJ16610 [Drosophila virilis] Back     alignment and taxonomy information
>gi|332029159|gb|EGI69170.1| 60S ribosomal protein L17 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query200
UNIPROTKB|Q29IM3186 RpL17 "60S ribosomal protein L 0.825 0.887 0.65 4e-58
UNIPROTKB|Q6XJ13186 RpL17 "60S ribosomal protein L 0.825 0.887 0.644 1.1e-57
FB|FBgn0029897186 RpL17 "Ribosomal protein L17" 0.825 0.887 0.638 2.2e-57
UNIPROTKB|E2R3D3184 LOC474501 "Uncharacterized pro 0.815 0.885 0.634 2.5e-56
UNIPROTKB|J9P1D0184 LOC610558 "Uncharacterized pro 0.815 0.885 0.634 2.5e-56
UNIPROTKB|J3KRX5174 RPL17 "60S ribosomal protein L 0.815 0.936 0.634 2.5e-56
UNIPROTKB|J3QL51228 RPL17 "60S ribosomal protein L 0.815 0.714 0.634 2.5e-56
UNIPROTKB|J3QQT2171 RPL17 "60S ribosomal protein L 0.815 0.953 0.634 2.5e-56
UNIPROTKB|P18621184 RPL17 "60S ribosomal protein L 0.815 0.885 0.634 2.5e-56
UNIPROTKB|F1NG53187 RPL17 "Uncharacterized protein 0.815 0.871 0.629 6.8e-56
UNIPROTKB|Q29IM3 RpL17 "60S ribosomal protein L17" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 117/180 (65%), Positives = 136/180 (75%)

Query:     1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
             MGRYS+E  N TKSCKARG NLRVHFKNT ETA+ I +MPLRRA +FLK V DQ ECVPF
Sbjct:     1 MGRYSRESDNVTKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRFLKAVIDQKECVPF 60

Query:    61 RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120
             RR+NGGVGRCAQAKQW TTQGRWP+KSA+FLLQLL+NAE+NAD +GLD DR+V+ HIQVN
Sbjct:    61 RRFNGGVGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRMVVHHIQVN 120

Query:   121 XXXXXXXXXXXAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEP 180
                        AHG               ++NPYMSSPCH+EVIL+E+E VV+K  +DEP
Sbjct:   121 RAQCLRRRTYRAHG---------------RINPYMSSPCHVEVILTEKEEVVSKAVDDEP 165
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q6XJ13 RpL17 "60S ribosomal protein L17" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms
FB|FBgn0029897 RpL17 "Ribosomal protein L17" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3D3 LOC474501 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1D0 LOC610558 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J3KRX5 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3QL51 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3QQT2 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P18621 RPL17 "60S ribosomal protein L17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG53 RPL17 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P18621RL17_HUMANNo assigned EC number0.67970.8150.8858noN/A
O59794RL17B_SCHPONo assigned EC number0.550.7250.7754yesN/A
Q8TX36RL22_METKANo assigned EC number0.37820.70.8805yesN/A
Q54NG2RL17_DICDINo assigned EC number0.54690.830.9222yesN/A
Q6BM53RL17_DEBHANo assigned EC number0.49420.7950.8594yesN/A
Q93VI3RL171_ARATHNo assigned EC number0.54730.850.9659yesN/A
Q5XTY7RL17_FELCANo assigned EC number0.67970.8150.8858N/AN/A
P54033RL22_METJANo assigned EC number0.35440.7050.9038yesN/A
A6UQ48RL22_METVSNo assigned EC number0.33540.7050.9215yesN/A
Q5MGD1RL17_LONONNo assigned EC number0.72270.9250.9893N/AN/A
A0NGY0RL17_ANOGANo assigned EC number0.7050.920.9839yesN/A
P24049RL17_RATNo assigned EC number0.67410.8150.8858yesN/A
Q4UF75RL17_THEANNo assigned EC number0.50.8950.9572yesN/A
Q3T025RL17_BOVINNo assigned EC number0.67410.8150.8858yesN/A
Q0PXV9RL17_DIACINo assigned EC number0.9150.9251.0N/AN/A
A8CAG3RL17_PHLPPNo assigned EC number0.71850.920.9892N/AN/A
Q4GXH5RL17_CARGRNo assigned EC number0.72670.7850.8626N/AN/A
Q4GXH6RL17_BIPLUNo assigned EC number0.65280.890.9834N/AN/A
Q4GXH7RL17_AGRLINo assigned EC number0.72180.770.8191N/AN/A
Q4KTG9RL17_SUBDONo assigned EC number0.57770.8150.8534N/AN/A
A8AA19RL22_IGNH4No assigned EC number0.33330.730.9182yesN/A
A5UL84RL22_METS3No assigned EC number0.33530.730.9480yesN/A
Q09JW2RL17_ARGMONo assigned EC number0.70940.820.8864N/AN/A
P46990RL17B_YEASTNo assigned EC number0.49150.810.8804yesN/A
Q6MY48RL17_ASPFUNo assigned EC number0.57550.7850.8092yesN/A
O14339RL17A_SCHPONo assigned EC number0.550.7250.7754yesN/A
O28359RL22_ARCFUNo assigned EC number0.33100.710.9161yesN/A
O26115RL22_METTHNo assigned EC number0.30900.740.9673yesN/A
Q4N4B9RL17_THEPANo assigned EC number0.49480.8950.9572yesN/A
P05740RL17A_YEASTNo assigned EC number0.49150.810.8804yesN/A
Q9BL19RL17_CAEELNo assigned EC number0.65240.8550.9144yesN/A
P51413RL172_ARATHNo assigned EC number0.54630.870.9942yesN/A
P35266RL171_HORVUNo assigned EC number0.56590.820.9647N/AN/A
Q29IM3RL17_DROPSNo assigned EC number0.70850.920.9892yesN/A
A6UWU2RL22_META3No assigned EC number0.32910.7050.9215yesN/A
Q6XJ13RL17_DROYANo assigned EC number0.70350.920.9892N/AN/A
Q5MIR6RL17_AEDALNo assigned EC number0.72360.920.9892N/AN/A
Q9CPR4RL17_MOUSENo assigned EC number0.67410.8150.8858noN/A
Q1HR65RL17_AEDAENo assigned EC number0.72360.920.9892N/AN/A
Q4PM54RL17_IXOSCNo assigned EC number0.70320.8250.8918N/AN/A
Q6CBS7RL17_YARLINo assigned EC number0.46890.810.8804yesN/A
Q9W3W8RL17_DROMENo assigned EC number0.69840.920.9892yesN/A
Q5UAS2RL17_BOMMONo assigned EC number0.72270.9250.9893N/AN/A
A2I3Y6RL17_MACHINo assigned EC number0.7250.9251.0N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
PTZ00178181 PTZ00178, PTZ00178, 60S ribosomal protein L17; Pro 3e-88
TIGR01038150 TIGR01038, L22_arch, ribosomal protein L22(archaea 6e-64
PRK04223153 PRK04223, rpl22p, 50S ribosomal protein L22P; Revi 8e-40
cd00336105 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e 3e-31
pfam00237105 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L 7e-28
COG0091120 COG0091, RplV, Ribosomal protein L22 [Translation, 1e-24
PRK00565112 PRK00565, rplV, 50S ribosomal protein L22; Reviewe 3e-06
PRK12279 311 PRK12279, PRK12279, 50S ribosomal protein L22/unkn 3e-06
>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional Back     alignment and domain information 
 Score =  256 bits (657), Expect = 3e-88
 Identities = 112/194 (57%), Positives = 146/194 (75%), Gaps = 18/194 (9%)

Query: 1   MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
           M +Y+++P+NP+KS KA+GS+LRVHFKNT ETA+ I  M L RA K+L++V  +  CVPF
Sbjct: 1   MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPF 60

Query: 61  RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120
           RR+NGGVGR AQAK++G TQGRWP KS  F+L LLKNAE+NA+ +GLD ++LVI H+QVN
Sbjct: 61  RRFNGGVGRTAQAKEFGHTQGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQVN 120

Query: 121 RAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEP 180
           RAPR RRRTYRAHG               ++NP+MSSPCHIE+I +E++  V KP+E   
Sbjct: 121 RAPRGRRRTYRAHG---------------RINPFMSSPCHIELIATEKDETVPKPKEAP- 164

Query: 181 HKKKISKKKLARAK 194
             KK +KK+LAR+K
Sbjct: 165 --KKQTKKQLARSK 176

Length = 181
>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Back     alignment and domain information
>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed Back     alignment and domain information
>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e Back     alignment and domain information
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e Back     alignment and domain information
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed Back     alignment and domain information
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 200
PTZ00178181 60S ribosomal protein L17; Provisional 100.0
TIGR01038150 L22_arch ribosomal protein L22(archaeal)/L17(eukar 100.0
PRK04223153 rpl22p 50S ribosomal protein L22P; Reviewed 100.0
KOG3353|consensus175 100.0
COG0091120 RplV Ribosomal protein L22 [Translation, ribosomal 100.0
CHL00034117 rpl22 ribosomal protein L22 100.0
PRK00565112 rplV 50S ribosomal protein L22; Reviewed 100.0
TIGR01044103 rplV_bact ribosomal protein L22, bacterial type. T 100.0
PF00237105 Ribosomal_L22: Ribosomal protein L22p/L17e; InterP 100.0
PRK12279 311 50S ribosomal protein L22/unknown domain fusion pr 100.0
cd00336105 Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17 99.98
KOG1711|consensus218 99.86
KOG3353|consensus175 96.3
>PTZ00178 60S ribosomal protein L17; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-56  Score=376.73  Aligned_cols=178  Identities=62%  Similarity=1.037  Sum_probs=167.3

Q ss_pred             CcccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCC
Q psy11361          1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQ   80 (200)
Q Consensus         1 m~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~   80 (200)
                      |++||++.+|++++++|..++++|||+|+++||++||||++++|++||++||++|++|||+|||+|+||++|.++||.++
T Consensus         1 ~~~Ys~~~~n~~~~akA~~~~~riSpkk~r~Va~~IRGk~v~~A~~~L~~Vi~~k~~VPf~r~~~~vgh~~~~~~~~~~~   80 (181)
T PTZ00178          1 MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKEFGHTQ   80 (181)
T ss_pred             CCccccCCCCCCceEEEEeCCcccchHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeecCCcccccccccccccc
Confidence            89999999779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCce
Q psy11361         81 GRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCH  160 (200)
Q Consensus        81 GR~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~H  160 (200)
                      ||||+|||..|+|+|+||++||+++|+|+|+|||.||.||+|++++|++|||+|               |++||.+++||
T Consensus        81 GR~P~KaA~~i~KlL~SA~aNAe~~gld~d~L~I~~i~v~kG~~lKR~~pRA~G---------------RA~~i~k~t~H  145 (181)
T PTZ00178         81 GRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQVNRAPRGRRRTYRAHG---------------RINPFMSSPCH  145 (181)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCcccCCCCCccCC---------------CcCcccCCcee
Confidence            999999999999999999999999999999999999999999999999999999               99999999999


Q ss_pred             EEEEEeeCccccCCCCCCCccccccCHHHHHHHHHh
Q psy11361        161 IEVILSERERVVAKPREDEPHKKKISKKKLARAKEK  196 (200)
Q Consensus       161 I~ivl~e~~~~~~k~~~~~~~~kk~~~~~~~~~~~~  196 (200)
                      |+|+|+|.+..+++  .++.+ ||..+|.|++.+-.
T Consensus       146 I~Ivl~e~~~~~~~--~~~~~-~~~~~~~~~~~~~~  178 (181)
T PTZ00178        146 IELIATEKDETVPK--PKEAP-KKQTKKQLARSKLR  178 (181)
T ss_pred             EEEEEEEccccccc--chhhh-hhhhHHHHHHHHhh
Confidence            99999998866665  34444 45567888887643

>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal) Back     alignment and domain information
>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed Back     alignment and domain information
>KOG3353|consensus Back     alignment and domain information
>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00034 rpl22 ribosomal protein L22 Back     alignment and domain information
>PRK00565 rplV 50S ribosomal protein L22; Reviewed Back     alignment and domain information
>TIGR01044 rplV_bact ribosomal protein L22, bacterial type Back     alignment and domain information
>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional Back     alignment and domain information
>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e Back     alignment and domain information
>KOG1711|consensus Back     alignment and domain information
>KOG3353|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
2zkr_r184 Structure Of A Mammalian Ribosomal 60s Subunit With 6e-63
3izr_V171 Localization Of The Large Subunit Ribosomal Protein 9e-47
2ww9_I184 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 5e-40
3izs_V170 Localization Of The Large Subunit Ribosomal Protein 6e-40
1s1i_N183 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-39
3zf7_R166 High-resolution Cryo-electron Microscopy Structure 8e-38
3jyw_N150 Structure Of The 60s Proteins For Eukaryotic Riboso 5e-36
4a17_Q183 T.Thermophila 60s Ribosomal Subunit In Complex With 7e-35
1s72_R155 Refined Crystal Structure Of The Haloarcula Marismo 1e-13
1ffk_O154 Crystal Structure Of The Large Ribosomal Subunit Fr 1e-13
3g4s_R150 Co-Crystal Structure Of Tiamulin Bound To The Large 1e-13
1yj9_R152 Crystal Structure Of The Mutant 50s Ribosomal Subun 2e-13
3j21_S155 Promiscuous Behavior Of Proteins In Archaeal Riboso 7e-10
>pdb|2ZKR|RR Chain r, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 184 Back     alignment and structure 
Iteration: 1

 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 134/178 (75%), Gaps = 15/178 (8%)
Query: 1   MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
           M RYS +P NPTKSCK+RGSNLRVHFKNTRETA+ I  M +R+A K+LK+V  Q +CVPF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 61  RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120
           RRYNGGVGRCAQAKQWG TQGRWP+KSA+FLL +LKNAESNA+ +GLD D LVIEHIQVN
Sbjct: 61  RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 121 XXXXXXXXXXXAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPRED 178
                      AHG               ++NPYMSSPCHIE+IL+E+E++V KP E+
Sbjct: 121 KAPKMRRRTYRAHG---------------RINPYMSSPCHIEMILTEKEQIVPKPEEE 163
>pdb|3IZR|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 171 Back     alignment and structure
>pdb|2WW9|I Chain I, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 184 Back     alignment and structure
>pdb|3IZS|V Chain V, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 170 Back     alignment and structure
>pdb|1S1I|N Chain N, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 183 Back     alignment and structure
>pdb|3ZF7|R Chain R, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 166 Back     alignment and structure
>pdb|3JYW|N Chain N, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 150 Back     alignment and structure
>pdb|4A17|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 183 Back     alignment and structure
>pdb|1S72|R Chain R, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 155 Back     alignment and structure
>pdb|1FFK|O Chain O, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 154 Back     alignment and structure
>pdb|3G4S|R Chain R, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 150 Back     alignment and structure
>pdb|1YJ9|R Chain R, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22 Length = 152 Back     alignment and structure
>pdb|3J21|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query200
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 5e-76
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 6e-73
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 2e-72
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 3e-70
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 6e-64
1i4j_A110 50S ribosomal protein L22; mutant, erythromycin re 1e-07
3r8s_S110 50S ribosomal protein L22; protein biosynthesis, R 2e-07
2zjr_P134 50S ribosomal protein L22; ribosome, large ribosom 5e-07
3bbo_U199 Ribosomal protein L22; large ribosomal subunit, sp 7e-07
2ftc_M110 Mitochondrial ribosomal protein L22 isoform A; mit 1e-05
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 184 Back     alignment and structure
 Score =  225 bits (575), Expect = 5e-76
 Identities = 130/197 (65%), Positives = 156/197 (79%), Gaps = 15/197 (7%)

Query: 1   MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPF 60
           M RYS +P NPTKSCK+RGSNLRVHFKNTRETA+ I  M +R+A K+LK+V  Q +CVPF
Sbjct: 1   MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60

Query: 61  RRYNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVN 120
           RRYNGGVGRCAQAKQWG TQGRWP+KSA+FLL +LKNAESNA+ +GLD D LVIEHIQVN
Sbjct: 61  RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120

Query: 121 RAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSERERVVAKPREDEP 180
           +AP++RRRTYRAHG               ++NPYMSSPCHIE+IL+E+E++V KP E+  
Sbjct: 121 KAPKMRRRTYRAHG---------------RINPYMSSPCHIEMILTEKEQIVPKPEEEVA 165

Query: 181 HKKKISKKKLARAKEKM 197
            KKKIS+KKL + K   
Sbjct: 166 QKKKISQKKLKKQKLMA 182
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V 3jyw_N Length = 184 Back     alignment and structure
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Length = 183 Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Length = 155 Back     alignment and structure
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110 Back     alignment and structure
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110 Back     alignment and structure
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134 Back     alignment and structure
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199 Back     alignment and structure
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 100.0
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 100.0
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 100.0
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 100.0
3j21_S155 50S ribosomal protein L22P; archaea, archaeal, KIN 100.0
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 100.0
3r8s_S110 50S ribosomal protein L22; protein biosynthesis, R 100.0
2ftc_M110 Mitochondrial ribosomal protein L22 isoform A; mit 100.0
2zjr_P134 50S ribosomal protein L22; ribosome, large ribosom 100.0
1i4j_A110 50S ribosomal protein L22; mutant, erythromycin re 100.0
3bbo_U199 Ribosomal protein L22; large ribosomal subunit, sp 100.0
4a17_Q183 RPL17, 60S ribosomal protein L21; eukaryotic ribos 90.16
3u5e_P184 L20A, YL17, 60S ribosomal protein L17-A; translati 85.32
3iz5_V171 60S ribosomal protein L17 (L22P); eukaryotic ribos 83.87
3j21_S155 50S ribosomal protein L22P; archaea, archaeal, KIN 83.8
1vq8_R155 50S ribosomal protein L22P; ribosome 50S, protein- 80.99
2zkr_r184 60S ribosomal protein L17; protein-RNA complex, 60 80.05
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Back     alignment and structure
Probab=100.00  E-value=5.3e-68  Score=444.82  Aligned_cols=176  Identities=47%  Similarity=0.763  Sum_probs=155.3

Q ss_pred             CcccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCC
Q psy11361          1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQ   80 (200)
Q Consensus         1 m~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~   80 (200)
                      |++||++|+||+++|+|+++++||||+|+++||++||||++++|+.||++||++|+||||++||+||||++|+++|||++
T Consensus         3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~   82 (183)
T 4a17_Q            3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQ   82 (183)
T ss_dssp             CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSB
T ss_pred             ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCcc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCce
Q psy11361         81 GRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCH  160 (200)
Q Consensus        81 GR~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~H  160 (200)
                      ||||+|||++|++||+||++||+++|||+|+|+|+||+||+||+++|++|||+|               |++||++++||
T Consensus        83 Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~G---------------Ra~pi~k~~~H  147 (183)
T 4a17_Q           83 GRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHG---------------RINPYLNSGCH  147 (183)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTT---------------EEEEEEECCEE
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCC---------------CcCCccCCCCC
Confidence            999999999999999999999999999999999999999999999999999999               99999999999


Q ss_pred             EEEEEeeCccccCCCCCCCccccccCHHHHH
Q psy11361        161 IEVILSERERVVAKPREDEPHKKKISKKKLA  191 (200)
Q Consensus       161 I~ivl~e~~~~~~k~~~~~~~~kk~~~~~~~  191 (200)
                      |||+|+|.++++|+|++++++|||.++||-+
T Consensus       148 Ieiil~Eke~~v~k~~~~~~~~k~~~~~~~~  178 (183)
T 4a17_Q          148 VEIFAQEVAAKVRKEAPKDAAKKVPKTKKGK  178 (183)
T ss_dssp             EEEEEEECCCC--------------------
T ss_pred             EEEEEeeccccCcCchhhhhhcccccccccc
Confidence            9999999999999999999999999999754
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N Back     alignment and structure
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Back     alignment and structure
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Back     alignment and structure
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Back     alignment and structure
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Back     alignment and structure
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Back     alignment and structure
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Back     alignment and structure
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N Back     alignment and structure
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Back     alignment and structure
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 200
d1vqor1150 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon 8e-47
d2gycq1106 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric 2e-10
d2zjrp1127 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ 5e-09
d1i4ja_110 d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat 3e-06
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  148 bits (376), Expect = 8e-47
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 18/165 (10%)

Query: 3   RYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRR 62
            YS E  +P  + KA     ++ FK+++  A+ I       A+ +L+ V +  + VPF++
Sbjct: 3   SYSVEA-DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQ 61

Query: 63  YNGGVGRCAQAKQWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRA 122
           +N GVG  ++   W    GR+P K++   L LL+NA  NAD++G D + + I+H+  ++ 
Sbjct: 62  HNSGVGHKSKVDGWD--AGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKV 119

Query: 123 PRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHIEVILSE 167
              + R  RA G               + + + S    +E+IL E
Sbjct: 120 GEQQGRKPRAMG---------------RASAWNSPQVDVELILEE 149
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127 Back     information, alignment and structure
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query200
d1vqor1150 Ribosomal protein L22 {Archaeon Haloarcula marismo 100.0
d2zjrp1127 Ribosomal protein L22 {Deinococcus radiodurans [Ta 100.0
d1i4ja_110 Ribosomal protein L22 {Thermus aquaticus, subsp. T 100.0
d2gycq1106 Ribosomal protein L22 {Escherichia coli [TaxId: 56 99.97
d1r9pa_134 NifU-like protein HI0377 {Haemophilus influenzae [ 89.39
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3.8e-49  Score=318.31  Aligned_cols=148  Identities=31%  Similarity=0.509  Sum_probs=144.3

Q ss_pred             cccCCCCCCCCceEEEeeCCcccchHHHHHHHhhhcCCCHHHHHHHHHHHHhccccccceeecCCCCcchhhcccCCCCC
Q psy11361          2 GRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAKQWGTTQG   81 (200)
Q Consensus         2 ~~YS~~~~d~~k~~kA~~~~~rvS~Kk~r~va~~Irg~~l~~Ai~~L~~Vi~kk~~VPf~ryn~gvgh~~~~~~~g~~~G   81 (200)
                      |+||++. ||+++++|+++++++||+|+++||++||||++++|+.+|++|+.++++|||++|++++||+++.  +||..|
T Consensus         2 ~~y~~~~-~~~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~--~~~~~g   78 (150)
T d1vqor1           2 ISYSVEA-DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV--DGWDAG   78 (150)
T ss_dssp             CCCSSCC-CTTTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC--SSCSBE
T ss_pred             CcccccC-CCCceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhh--cCCCcc
Confidence            6899996 9999999999999999999999999999999999999999999999999999999999999876  588899


Q ss_pred             CCchhhHHHHHHHHHHHHHhhhhcCCCCCCeEEEEEEecCCCccccceeccCCCccCCCCcceeeeeeeeccCCCCCceE
Q psy11361         82 RWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGNYRGLDTDRLVIEHIQVNPYMSSPCHI  161 (200)
Q Consensus        82 R~P~Kaa~~~lklLksA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~~RA~G~~~~~~~~~l~~~~~Ra~~~~k~~~HI  161 (200)
                      |||+++|+.|+++|+||++||++.|+|+|+|||.||+||+|++++|++|||+|               |++++.+++|||
T Consensus        79 ~~p~kaa~~i~kll~sa~aNA~~~~~d~~~L~I~~~~v~kG~~~KR~~prArG---------------Ra~~i~k~~~hi  143 (150)
T d1vqor1          79 RYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMG---------------RASAWNSPQVDV  143 (150)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGG---------------CEEECCEEEEEE
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCccccCcCcccCC---------------CCCCccCCCceE
Confidence            99999999999999999999999999999999999999999999999999999               999999999999


Q ss_pred             EEEEee
Q psy11361        162 EVILSE  167 (200)
Q Consensus       162 ~ivl~e  167 (200)
                      +|+|+|
T Consensus       144 ~vvL~E  149 (150)
T d1vqor1         144 ELILEE  149 (150)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999987
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Back     information, alignment and structure
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure