Psyllid ID: psy11442
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1362 | ||||||
| 383847064 | 1650 | PREDICTED: uncharacterized protein LOC10 | 0.314 | 0.26 | 0.302 | 2e-50 | |
| 189242082 | 1746 | PREDICTED: similar to BEL12_AG transposo | 0.195 | 0.152 | 0.395 | 8e-48 | |
| 383847773 | 957 | PREDICTED: uncharacterized protein LOC10 | 0.236 | 0.336 | 0.347 | 1e-46 | |
| 328702013 | 1727 | PREDICTED: hypothetical protein LOC10057 | 0.439 | 0.346 | 0.283 | 1e-45 | |
| 328704082 | 1193 | PREDICTED: hypothetical protein LOC10056 | 0.193 | 0.221 | 0.385 | 2e-44 | |
| 328705502 | 1550 | PREDICTED: hypothetical protein LOC10057 | 0.195 | 0.171 | 0.379 | 3e-43 | |
| 145220605 | 1752 | putative gag-pol protein [Drosophila ana | 0.199 | 0.155 | 0.407 | 3e-42 | |
| 339233598 | 947 | putative integrase core domain protein [ | 0.201 | 0.290 | 0.341 | 6e-42 | |
| 58698875 | 1120 | SD27140p [Wolbachia endosymbiont of Dros | 0.199 | 0.242 | 0.407 | 7e-42 | |
| 339244935 | 1251 | putative integrase core domain protein [ | 0.201 | 0.219 | 0.341 | 9e-42 |
| >gi|383847064|ref|XP_003699175.1| PREDICTED: uncharacterized protein LOC100874762 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 155/512 (30%), Positives = 261/512 (50%), Gaps = 83/512 (16%)
Query: 70 LATSNKVIFSENKGCFELRKWASNSQQLLNTVPHEHCEVPLRQNEESTFKIL-------- 121
+A + +I +KG F+LR+WA+N L++++ + LR + + T K L
Sbjct: 455 IAIRDDLITLCDKGKFKLRQWATNEPTLIDSLDDKTDATHLRLDLDGTVKTLGLGWNAKH 514
Query: 122 -SVFIGNQQLTLSLIMLLRSILSAPSDQFFISPSKVAPTKQLLSIPRLELCAALLLSRLY 180
++ +++ + + RSILS + F L + + + A +L+ +L+
Sbjct: 515 DTIIYDVKEIEYNTRVTKRSILSVIASLF----------DPLGLLGPIIIRAKILMQKLW 564
Query: 181 NSLHNYLTKLNVKNVTTFFSDSNIVLAWLRTAPHLLQTYVANRVVEINN--DITFLLRKI 238
+ L+W + P + T+ E+N+ +ITF
Sbjct: 565 K----------------------LQLSWDESVPTDIHTFWLTFCRELNSIRNITFS---- 598
Query: 239 LVIVLRVIYFPSNLFLIRYGGMVLSFSPLLIGQSYPSGF---KFCNRG-----LIKAKSK 290
R I +++ L +G S Q+Y + F F + G L+ AKS+
Sbjct: 599 -----RQITCKASVSLELHGFCDAS------EQAYGACFYVRSFDHHGNIIVKLLSAKSR 647
Query: 291 VAPTKQLLSIPRLELCAALLLSRLYNSLHNYLTKLNVKNVTFFSDSNIVLAWLRTAPHLL 350
VAP K + ++PRLELCAA LL++LY ++ + L +++ F+SDS I L W+RT PH L
Sbjct: 648 VAPLKTV-TLPRLELCAAHLLAKLYQTITSSLRRISFNRTIFWSDSTITLHWIRTPPHTL 706
Query: 351 QTYVANRVVEINKLADGCKWYHVPTSENPCDCASRGLLPQQLVSHPLWWHGPQFLSSPDH 410
+T+VA+RV EI + G +W H ++ NP D SRGL P +LV++ W+HGP +L+ +
Sbjct: 707 KTFVAHRVNEIQNVTSGIEWRHASSANNPADLISRGLSPTELVNNIFWFHGPSWLAKAEE 766
Query: 411 QWPSGQGQNVNEVPELKKSVK--TLVVTDSATAESSNDLHDSFQKYSQLSKVQRVFAYIL 468
WP+ + + + E+PEL+ S+ + VV + F+KYS S+++R+ AYIL
Sbjct: 767 HWPAFRLEPI-ELPELRPSIALPSRVVN-----------WNGFEKYSSYSRLKRIIAYIL 814
Query: 469 RFIHNVRNRHAKLQGPLQIDGLNSSLDLLTNLEQAFHFKQVLTSLKNDSPLKDASLRKLT 528
RF N + A + L + ++ ++Q +F QV +L N S +A + L
Sbjct: 815 RFRFNSSKKEANKGMVSASEILRAETYIIRAIQQESYF-QVFNAL-NSSGRLNAGISPLN 872
Query: 529 PFIDDAGLIRVGGRLHNADLPYHRKHPLLLPK 560
PFID G++RVGGRL A++PY+ +HP+LLP+
Sbjct: 873 PFIDAKGILRVGGRLSQANIPYNARHPILLPR 904
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189242082|ref|XP_001809963.1| PREDICTED: similar to BEL12_AG transposon polyprotein [Tribolium castaneum] gi|270017009|gb|EFA13455.1| hypothetical protein TcasGA2_TC010686 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|383847773|ref|XP_003699527.1| PREDICTED: uncharacterized protein LOC100876895 [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|328702013|ref|XP_003241778.1| PREDICTED: hypothetical protein LOC100573291 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|328704082|ref|XP_003242398.1| PREDICTED: hypothetical protein LOC100569539 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|328705502|ref|XP_003242831.1| PREDICTED: hypothetical protein LOC100572386 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|145220605|gb|ABP48078.1| putative gag-pol protein [Drosophila ananassae] | Back alignment and taxonomy information |
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| >gi|339233598|ref|XP_003381916.1| putative integrase core domain protein [Trichinella spiralis] gi|316979212|gb|EFV62034.1| putative integrase core domain protein [Trichinella spiralis] | Back alignment and taxonomy information |
|---|
| >gi|58698875|ref|ZP_00373744.1| SD27140p [Wolbachia endosymbiont of Drosophila ananassae] gi|58534611|gb|EAL58741.1| SD27140p [Wolbachia endosymbiont of Drosophila ananassae] | Back alignment and taxonomy information |
|---|
| >gi|339244935|ref|XP_003378393.1| putative integrase core domain protein [Trichinella spiralis] gi|316972697|gb|EFV56362.1| putative integrase core domain protein [Trichinella spiralis] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1362 | |||
| pfam03564 | 146 | pfam03564, DUF1759, Protein of unknown function (D | 7e-20 | |
| pfam03564 | 146 | pfam03564, DUF1759, Protein of unknown function (D | 6e-13 | |
| pfam05380 | 159 | pfam05380, Peptidase_A17, Pao retrotransposon pept | 1e-08 | |
| pfam05380 | 159 | pfam05380, Peptidase_A17, Pao retrotransposon pept | 2e-07 | |
| pfam05585 | 164 | pfam05585, DUF1758, Putative peptidase (DUF1758) | 0.003 |
| >gnl|CDD|202685 pfam03564, DUF1759, Protein of unknown function (DUF1759) | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 7e-20
Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Query: 1168 FSGEFSEFNVFYESFKSLIHDNKELDNTQKVQYLVSKLSGKALTVCAGVPATVDNYSIIF 1227
FSG+ E+ F+E F+SLIH +L QK YL S L G+A T+ +P T NY + +
Sbjct: 1 FSGDIKEWQAFWELFESLIHSKTDLPEIQKFNYLKSALEGEAATLVTHLPITAANYDVAW 60
Query: 1228 NNLVEKYQCKRSQAKAYLSNILNFKQIKGESPDQLNSLIDELCASVLALKKVDLDSLSDF 1287
L E+Y R ++ L+ ++ +S QL L DE + L+++ + D
Sbjct: 61 EALKERYDNPRVIIRSLLNKLMKLPSTNNDSVSQLRRLYDEANEIIRQLEQLGEN-ADDT 119
Query: 1288 MLAHITLSKIDSETARLFE 1306
+LAH+ L K+D E R +
Sbjct: 120 ILAHLLLQKLDEEIRRKWI 138
|
This is a family of proteins of unknown function. Most of the members are gag-polyproteins. Length = 146 |
| >gnl|CDD|202685 pfam03564, DUF1759, Protein of unknown function (DUF1759) | Back alignment and domain information |
|---|
| >gnl|CDD|147520 pfam05380, Peptidase_A17, Pao retrotransposon peptidase | Back alignment and domain information |
|---|
| >gnl|CDD|147520 pfam05380, Peptidase_A17, Pao retrotransposon peptidase | Back alignment and domain information |
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| >gnl|CDD|147642 pfam05585, DUF1758, Putative peptidase (DUF1758) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1362 | |||
| PF05380 | 159 | Peptidase_A17: Pao retrotransposon peptidase ; Int | 100.0 | |
| PF03564 | 145 | DUF1759: Protein of unknown function (DUF1759); In | 99.96 | |
| PF03564 | 145 | DUF1759: Protein of unknown function (DUF1759); In | 99.8 | |
| PF05585 | 164 | DUF1758: Putative peptidase (DUF1758); InterPro: I | 98.71 | |
| cd01644 | 213 | RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) i | 98.08 | |
| .; GO: 0004523 ribonuclease H activity" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00336">PF00336 | 245 | DNA_pol_viral_C: DNA polymerase (viral) C-terminal | 97.69 | |
| cd05480 | 103 | NRIP_C NRIP_C; putative nuclear receptor interacti | 97.43 | |
| cd06222 | 130 | RnaseH RNase H (RNase HI) is an endonuclease that | 97.17 | |
| PF09668 | 124 | Asp_protease: Aspartyl protease; InterPro: IPR0191 | 97.1 | |
| PF00075 | 132 | RNase_H: RNase H; InterPro: IPR002156 The RNase H | 96.33 | |
| cd05479 | 124 | RP_DDI RP_DDI; retropepsin-like domain of DNA dama | 96.3 | |
| PF13650 | 90 | Asp_protease_2: Aspartyl protease | 95.96 | |
| PF13975 | 72 | gag-asp_proteas: gag-polyprotein putative aspartyl | 95.91 | |
| cd05484 | 91 | retropepsin_like_LTR_2 Retropepsins_like_LTR, peps | 95.81 | |
| KOG0012|consensus | 380 | 95.39 | ||
| PF13456 | 87 | RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH | 94.6 | |
| PRK00203 | 150 | rnhA ribonuclease H; Reviewed | 93.88 | |
| PF14223 | 119 | UBN2: gag-polypeptide of LTR copia-type | 93.73 | |
| PF14227 | 119 | UBN2_2: gag-polypeptide of LTR copia-type | 93.14 | |
| cd05483 | 96 | retropepsin_like_bacteria Bacterial aspartate prot | 93.06 | |
| COG0328 | 154 | RnhA Ribonuclease HI [DNA replication, recombinati | 93.06 | |
| cd06095 | 86 | RP_RTVL_H_like Retropepsin of the RTVL_H family of | 93.01 | |
| PF00077 | 100 | RVP: Retroviral aspartyl protease The Prosite entr | 92.65 | |
| PRK07708 | 219 | hypothetical protein; Validated | 92.53 | |
| PRK13907 | 128 | rnhA ribonuclease H; Provisional | 92.12 | |
| PF08284 | 135 | RVP_2: Retroviral aspartyl protease; InterPro: IPR | 91.71 | |
| cd05481 | 93 | retropepsin_like_LTR_1 Retropepsins_like_LTR; peps | 91.7 | |
| PRK06548 | 161 | ribonuclease H; Provisional | 91.07 | |
| PF14893 | 331 | PNMA: PNMA | 91.01 | |
| TIGR02281 | 121 | clan_AA_DTGA clan AA aspartic protease, TIGR02281 | 90.88 | |
| PRK08719 | 147 | ribonuclease H; Reviewed | 90.45 | |
| PF12384 | 177 | Peptidase_A2B: Ty3 transposon peptidase; InterPro: | 89.18 | |
| PRK07238 | 372 | bifunctional RNase H/acid phosphatase; Provisional | 87.24 | |
| TIGR03698 | 107 | clan_AA_DTGF clan AA aspartic protease, AF_0612 fa | 86.46 | |
| PF14893 | 331 | PNMA: PNMA | 85.73 |
| >PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=340.27 Aligned_cols=155 Identities=27% Similarity=0.365 Sum_probs=146.2
Q ss_pred CCcccccchhhHHHHHHHHHhhccccccchhhccccccceeccccccccccccCCCChhhHHHHHHHHHhhccccccccc
Q psy11442 157 APTKQLLSIPRLELCAALLLSRLYNSLHNYLTKLNVKNVTTFFSDSNIVLAWLRTAPHLLQTYVANRVVEINNDITFLLR 236 (1362)
Q Consensus 157 ~tkR~~lS~p~~el~~a~~~a~~~Dpl~G~l~p~~~~~k~~~q~~~~~~l~Wd~~l~~~~~~~w~~~~~~l~~~~~~~ip 236 (1362)
||||+++|+ +|++|||| |+++|+++++|+++|++|+.+++||+++|+++...|.+|++++..+.++.||
T Consensus 1 pTKR~ils~----------ia~~yDPl-Gl~~p~~i~~K~llq~lw~~~l~WD~~lp~el~~~w~~~~~~l~~~~~i~iP 69 (159)
T PF05380_consen 1 PTKRQILSF----------IASIYDPL-GLLAPIIIRAKLLLQKLWQSKLDWDDPLPDELRKEWKKWLKELESLSPIRIP 69 (159)
T ss_pred CChHHHHHH----------HHHHcCcc-hhhHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHhhcccccCC
Confidence 699999999 99999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecce----eeecccccccceEEEEEeccccccccccCCCceeeeeeeeeeccccccCcccccchhhHHHHHHHHH
Q psy11442 237 KILVIVLRV----IYFPSNLFLIRYGGMVLSFSPLLIGQSYPSGFKFCNRGLIKAKSKVAPTKQLLSIPRLELCAALLLS 312 (1362)
Q Consensus 237 R~~~~~~~~----~~F~~DAS~~ayga~~Ylr~~~~~g~~~~~~~~~~~~~li~aKsrv~P~k~~~tIPRlEL~a~~l~~ 312 (1362)
|++...... |+|| |||+.|||||+|+| . +.+|.. + ++|++|||||+|+|. .||||||||||++|+
T Consensus 70 R~i~~~~~~~~~L~~F~-DAS~~aygavvYlr------~-~~~~~~-~-~~ll~aKsrv~P~k~-~tIPRlEL~a~~l~~ 138 (159)
T PF05380_consen 70 RCIPISDYRSVELHVFC-DASESAYGAVVYLR------S-YSDGSV-Q-VRLLFAKSRVAPLKT-VTIPRLELLAALLGV 138 (159)
T ss_pred cccccccccceeeeEee-cccccceeeEeEee------e-ccCCce-e-eeeeeecccccCCCC-CcHHHHHHHHHHHHH
Confidence 977533221 9999 99999999999999 6 677776 6 899999999999999 799999999999999
Q ss_pred HHHHHHHHHhccCCcccEEEee
Q psy11442 313 RLYNSLHNYLTKLNVKNVTFFS 334 (1362)
Q Consensus 313 ~l~~~~~~~l~~~~i~~~~~~t 334 (1362)
+|+..+.++|+ +++.+++|||
T Consensus 139 ~l~~~~~~~l~-~~~~~~~~wt 159 (159)
T PF05380_consen 139 RLANTVKKELD-IEISQVVFWT 159 (159)
T ss_pred HHHHHHHHHcC-CCcceeEEeC
Confidence 99999999999 9999999997
|
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| >PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function | Back alignment and domain information |
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| >PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function | Back alignment and domain information |
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| >PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function [] | Back alignment and domain information |
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| >cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons | Back alignment and domain information |
|---|
| >PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein | Back alignment and domain information |
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| >cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein | Back alignment and domain information |
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| >cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner | Back alignment and domain information |
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| >PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
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| >PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site | Back alignment and domain information |
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| >cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein | Back alignment and domain information |
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| >PF13650 Asp_protease_2: Aspartyl protease | Back alignment and domain information |
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| >PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease | Back alignment and domain information |
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| >cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases | Back alignment and domain information |
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| >KOG0012|consensus | Back alignment and domain information |
|---|
| >PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B | Back alignment and domain information |
|---|
| >PRK00203 rnhA ribonuclease H; Reviewed | Back alignment and domain information |
|---|
| >PF14223 UBN2: gag-polypeptide of LTR copia-type | Back alignment and domain information |
|---|
| >PF14227 UBN2_2: gag-polypeptide of LTR copia-type | Back alignment and domain information |
|---|
| >cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family | Back alignment and domain information |
|---|
| >COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements | Back alignment and domain information |
|---|
| >PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PRK07708 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK13907 rnhA ribonuclease H; Provisional | Back alignment and domain information |
|---|
| >PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) | Back alignment and domain information |
|---|
| >cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats | Back alignment and domain information |
|---|
| >PRK06548 ribonuclease H; Provisional | Back alignment and domain information |
|---|
| >PF14893 PNMA: PNMA | Back alignment and domain information |
|---|
| >TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family | Back alignment and domain information |
|---|
| >PRK08719 ribonuclease H; Reviewed | Back alignment and domain information |
|---|
| >PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PRK07238 bifunctional RNase H/acid phosphatase; Provisional | Back alignment and domain information |
|---|
| >TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family | Back alignment and domain information |
|---|
| >PF14893 PNMA: PNMA | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 3e-13
Identities = 92/633 (14%), Positives = 189/633 (29%), Gaps = 189/633 (29%)
Query: 705 FTTLLCKIEAIL-RF-DERLAYADDVVLTG--ARCQSLPAVRDSFIEVLDK-WNS----C 755
F TLL K E ++ +F +E L +++ + + +IE D+ +N
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 756 KMQIDSTHTPDYSDLDKVL----------VY----CGHAQAKLEK-ALAAEVVPVRTERS 800
K + + Y L + L + G K +A +V + +
Sbjct: 128 KYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSG-------KTWVALDVC--LSYKV 176
Query: 801 KVRLPALELPSFSGEFSEFNVFYESFKSLIHDNKELDNTQKVQYLVSKLSGKALTVCAGV 860
+ ++ F +F+ + K+ L+ QK+ Y + +
Sbjct: 177 QCKMD-------------FKIFWLNLKNCNSPETVLEMLQKLLYQIDP------NWTSR- 216
Query: 861 PATADNYSIIFNNLVEK---YQCKRSQAKAYLSNILNFKQIKGQNVNEVPELKK---SVK 914
+ N + +++ + + L +L NV S K
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLL-------NVQNAKAWNAFNLSCK 267
Query: 915 TLV------VTDSATAE-----SSNDLHDSFQKYSKLSKVQHVFAYVLRFIHNIHN---R 960
L+ VTD +A S + + S + +++ R
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS----LLL---KYLDCRPQDLPR 320
Query: 961 HAKLQGPLQIDGLNSSL-DLLTNLEQAFHFKQVLTSLKNDSPLK---DASLRKLTPFI-- 1014
P ++ + S+ D L + +K V N L ++SL L P
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDN---WKHV-----NCDKLTTIIESSLNVLEPAEYR 372
Query: 1015 ---DDAGLIRVGGRLHNADLPYHRKHPLLLPKIHIISSWLKLLNIIVFMFRFIHFLPRRD 1071
D + +A +P LL I W ++ V + ++ L +
Sbjct: 373 KMFDRLSVFPP-----SAHIPTI-----LLSLI-----WFDVIKSDVMV--VVNKLHKY- 414
Query: 1072 FISVSDRNFAEIAL-IKALQRQFFAKDIEALENNKEVSPSLRHLNPFLQNGLLRVGGRLS 1130
S+ ++ E + I ++ + K ++ + F + L+ L
Sbjct: 415 --SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP--YLD 470
Query: 1131 N---SSLGYEHKHPVILPKKHPNLNAEKSKVRLPALELPSFSGEFSEFNVFYESFKSLIH 1187
S +G+ H L +E + F + + F+ L
Sbjct: 471 QYFYSHIGH-H---------------------LKNIEH---PERMTLFRMVFLDFRFL-- 503
Query: 1188 DNKELDNTQKVQYLVSKLSGKALTVCAGVPAT---VDNYSIIFNNLVEKYQCKRSQA-KA 1243
QK+++ A + T + Y + Y C +
Sbjct: 504 -------EQKIRH-----DSTAWNASGSILNTLQQLKFY--------KPYICDNDPKYER 543
Query: 1244 YLSNILNFKQIKGESPDQLNSLIDELCASVLAL 1276
++ IL+F + + + S +AL
Sbjct: 544 LVNAILDF--LPKIEENLICS--KYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1362 | |||
| 1rw3_A | 455 | POL polyprotein; RNA and DNA dependent DNA polymer | 98.19 | |
| 3oym_A | 395 | PFV integrase, P42IN; protein-DNA complex; HET: DN | 97.41 | |
| 3hst_B | 141 | Protein RV2228C/MT2287; ribonuclease H1, RV2228C N | 97.01 | |
| 3u3g_D | 140 | Ribonuclease H, RNAse H1; hydrolase, cleave the RN | 96.8 | |
| 2ehg_A | 149 | Ribonuclease HI; RNAse HI, hyperthermophilic archa | 96.62 | |
| 3s8i_A | 148 | Protein DDI1 homolog 1; protease, structural genom | 96.48 | |
| 2kq2_A | 147 | Ribonuclease H-related protein; PSI, NESG, protein | 95.99 | |
| 2qkb_A | 154 | Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy | 95.33 | |
| 2x78_A | 200 | Integrase; viral protein, DNA-directed DNA polyme | 95.19 | |
| 2i1a_A | 148 | DNA damage-inducible protein DDI1; acid protease f | 94.9 | |
| 1zbf_A | 142 | Ribonuclease H-related protein; RNAse H, RNA/DNA h | 94.76 | |
| 3p1g_A | 165 | Xenotropic murine leukemia virus-related virus (X | 94.57 | |
| 3f9k_A | 210 | Integrase; protein-protein complex, AIDS, DNA inte | 93.63 | |
| 2e4l_A | 158 | Ribonuclease HI, RNAse HI; hydrolase, endoribonucl | 93.45 | |
| 1jl1_A | 155 | Ribonuclease HI; RNAse HI, protein stability, ther | 92.86 | |
| 1cxq_A | 162 | Avian sarcoma virus integrase; mixed beta-sheet su | 92.66 | |
| 3h08_A | 146 | RNH (ribonuclease H); RNAse H, 3D-structure, endon | 92.49 | |
| 3qio_A | 150 | GAG-POL polyprotein; RNAse H, inhibitor, nuclease, | 92.29 | |
| 2zd1_A | 557 | Reverse transcriptase/ribonuclease H; P51/P66, het | 92.29 | |
| 4htu_A | 134 | Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, | 92.03 | |
| 1ril_A | 166 | Ribonuclease H; hydrolase(endoribonuclease); 2.80A | 90.73 | |
| 1k6y_A | 212 | Integrase; HIV-1, domain organization, transferase | 89.03 | |
| 2lsn_A | 165 | Reverse transcriptase; RNAse H, viral protein; NMR | 88.1 | |
| 1mu2_A | 555 | HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym | 86.72 | |
| 1c6v_A | 164 | Protein (SIV integrase); DNA integration, DNA bind | 85.69 | |
| 1fmb_A | 104 | EIAV protease; hydrolase (acid proteinase), RNA-di | 85.15 | |
| 3hph_A | 219 | Integrase, IN; protein-protein complex, tetramer, | 80.54 |
| >1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2 | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-07 Score=115.66 Aligned_cols=220 Identities=9% Similarity=-0.008 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcCCceeEEeechHHHhccCCCCCcccCCcCCCCCCceEEeeeeecCCceEEEEEecccccCCCCCccccC
Q psy11442 73 SNKVIFSENKGCFELRKWASNSQQLLNTVPHEHCEVPLRQNEESTFKILSVFIGNQQLTLSLIMLLRSILSAPSDQFFIS 152 (1362)
Q Consensus 73 ~~~~~~~~~~~~f~lrk~~sN~~~~~~~i~~~~~~~~~~~~~~~~~K~LG~~w~~~~D~l~~~~~~~~~~~~~~~~~~~~ 152 (1362)
..+|.+.|.+.||.|. .+.+. -.....+.||+.|+.... .+...++-.. ..
T Consensus 221 l~~v~~~l~~~gl~l~--------------~~K~~-----f~~~~~~fLG~~i~~~gi----~~~~~kv~~i------~~ 271 (455)
T 1rw3_A 221 TRALLQTLGNLGYRAS--------------AKKAQ-----ICQKQVKYLGYLLKEGQR----WLTEARKETV------MG 271 (455)
T ss_dssp HHHHHHHHHHHTCCBC--------------GGGCC-----CSBSSCEETTEEESSSEE----CCCTTCCCCC------CC
T ss_pred HHHHHHHHHHcCCccC--------------ccchh-----hhccceeEeeeeccCCee----EEChhHhhhh------cc
Confidence 4677888888888774 12221 123567999999986542 2221111110 01
Q ss_pred CCCCCCcccccchhhHHHHHHHHHhhccccccchhhccccccceecccccc-----ccccccCCCChhhHHHHHHHHHhh
Q psy11442 153 PSKVAPTKQLLSIPRLELCAALLLSRLYNSLHNYLTKLNVKNVTTFFSDSN-----IVLAWLRTAPHLLQTYVANRVVEI 227 (1362)
Q Consensus 153 ~~~~~tkR~~lS~p~~el~~a~~~a~~~Dpl~G~l~p~~~~~k~~~q~~~~-----~~l~Wd~~l~~~~~~~w~~~~~~l 227 (1362)
-..+.|++++.|+ +. .+ |++..++-....+++-++. ....|++.. ...|..+.+.+
T Consensus 272 ~~~p~t~k~l~~f----------lG----~~-~y~r~fi~~~~~~~~pL~~llkk~~~~~W~~~~----~~af~~lK~~l 332 (455)
T 1rw3_A 272 QPTPKTPRQLREF----------LG----TA-GFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQ----QKAYQEIKQAL 332 (455)
T ss_dssp CCTTTHHHHHHHT----------TT----TT-CCCSSCCCCCGGGCCTTCC--------CCCCCC----SSSCCHHHHHT
T ss_pred CCCCCCHHHhhhh----------cc----cc-hHHHHHHhhhhhhcccHHHHhcCCCCcCchHHH----HHHHHHHHHHh
Confidence 1234578888877 32 23 3334444334444444443 257787664 44566677777
Q ss_pred ccccccccceeeeeecceeeecccccccceEEEEEeccccccccccCCCceeeeeeeeeeccccccCcccccchhhHHHH
Q psy11442 228 NNDITFLLRKILVIVLRVIYFPSNLFLIRYGGMVLSFSPLLIGQSYPSGFKFCNRGLIKAKSKVAPTKQLLSIPRLELCA 307 (1362)
Q Consensus 228 ~~~~~~~ipR~~~~~~~~~~F~~DAS~~ayga~~Ylr~~~~~g~~~~~~~~~~~~~li~aKsrv~P~k~~~tIPRlEL~a 307 (1362)
.....+..|.. ....++|| |||..|||||.+-. .+|.. . .-..+||+...+.+. ++++.+||+|
T Consensus 333 ~~~pvL~~p~~---~~~~~l~~-DAS~~~~gavL~q~---------~~~~~-~-~i~y~Sk~l~~~e~~-ys~~ekEllA 396 (455)
T 1rw3_A 333 LTAPALGLPDL---TKPFELFV-DEKQGYAKGVLTQK---------LGPWR-R-PVAYLSKKLDPVAAG-WPPCLRMVAA 396 (455)
T ss_dssp CSSCCSCCSSS---CCTTSCEE-EEEECSSSBEECCB---------CTTTT-C-CCCCCCBCSCSSCSS-SCCSSHHHHH
T ss_pred hcCcccccCCC---CCcEEEEE-eccCCcceeEEEEe---------cCCcE-E-EEEEEcccCCccccc-cchHHHHHHH
Confidence 76544455542 11128899 99999999987655 23433 2 334455655555455 9999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcccEEEeechHHHHHHHhcCCCccchhHHHHHHHHHhhC
Q psy11442 308 ALLLSRLYNSLHNYLTKLNVKNVTFFSDSNIVLAWLRTAPHLLQTYVANRVVEINKLA 365 (1362)
Q Consensus 308 ~~l~~~l~~~~~~~l~~~~i~~~~~~tDS~i~L~wi~~~~~~~~~fv~NRv~~I~~~~ 365 (1362)
++.|++.... .| .-..+++|||+. +++|+.+...+| +..+|+.+....+
T Consensus 397 i~~a~~~~~~---yl---~g~~~~v~tDh~-~~~~l~~~~~~~--~~~~Rl~rW~~~L 445 (455)
T 1rw3_A 397 IAVLTKDAGK---LT---MGQPLVIKAPHA-VEALVKQPPDRW--LSNARMTHYQALL 445 (455)
T ss_dssp HHHHHHHHHG---GG---CSSCEEEECSSC-TTTTSSSTTTTT--CCCCCCSCCCCCC
T ss_pred HHHHHHHHHH---Hc---CCCcEEEEecCh-HHHHhCCCcccc--ccchHHHHHHHHh
Confidence 9998865543 33 346799999998 999999876544 3445555444433
|
| >3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ... | Back alignment and structure |
|---|
| >3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism} | Back alignment and structure |
|---|
| >2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A | Back alignment and structure |
|---|
| >3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A | Back alignment and structure |
|---|
| >2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* | Back alignment and structure |
|---|
| >2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A | Back alignment and structure |
|---|
| >2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* | Back alignment and structure |
|---|
| >3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A | Back alignment and structure |
|---|
| >3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A | Back alignment and structure |
|---|
| >2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A | Back alignment and structure |
|---|
| >1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ... | Back alignment and structure |
|---|
| >1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A | Back alignment and structure |
|---|
| >3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
| >3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A | Back alignment and structure |
|---|
| >2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... | Back alignment and structure |
|---|
| >4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A | Back alignment and structure |
|---|
| >1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A | Back alignment and structure |
|---|
| >1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A | Back alignment and structure |
|---|
| >2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus} | Back alignment and structure |
|---|
| >1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B | Back alignment and structure |
|---|
| >1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2 | Back alignment and structure |
|---|
| >1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* | Back alignment and structure |
|---|
| >3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1362 | |||
| d1mu2a1 | 126 | HIV RNase H (Domain of reverse transcriptase) {Hum | 96.19 | |
| d1s1ta1 | 110 | HIV RNase H (Domain of reverse transcriptase) {Hum | 95.35 | |
| d1cxqa_ | 147 | Retroviral integrase, catalytic domain {Rous sarco | 91.18 | |
| d1rila_ | 147 | RNase H (RNase HI) {Thermus thermophilus [TaxId: 2 | 85.61 | |
| d1zbfa1 | 132 | BH0863-like Ribonuclease H {Bacillus halodurans [T | 84.85 | |
| d1jl1a_ | 152 | RNase H (RNase HI) {Escherichia coli [TaxId: 562]} | 83.71 |
| >d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Ribonuclease H domain: HIV RNase H (Domain of reverse transcriptase) species: Human immunodeficiency virus type 2 [TaxId: 11709]
Probab=96.19 E-value=0.0076 Score=57.43 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=49.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhccCCcccEEEeechHHHHHHHhcCCCccch-hHHHHHHHHHhhCCCCceEeecCC
Q psy11442 298 LSIPRLELCAALLLSRLYNSLHNYLTKLNVKNVTFFSDSNIVLAWLRTAPHLLQT-YVANRVVEINKLADGCKWYHVPTS 376 (1362)
Q Consensus 298 ~tIPRlEL~a~~l~~~l~~~~~~~l~~~~i~~~~~~tDS~i~L~wi~~~~~~~~~-fv~NRv~~I~~~~~~~~w~hvpt~ 376 (1362)
.|--+.||.|++.+.+ .....+.++|||+.|+.|+.+..+.+.. ....++....+. ....|.|||+.
T Consensus 42 ~tnn~AEl~Ai~~al~-----------~~~~~i~I~tDS~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~wV~gH 109 (126)
T d1mu2a1 42 TTNQQAELEAFAMALT-----------DSGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKK-EAIYVAWVPAH 109 (126)
T ss_dssp CCHHHHHHHHHHHHHH-----------TSCSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHHC-SEEEEEECCSS
T ss_pred CcchHHHHHHHHHHhc-----------cCCcceEEEechHHHHHHHhcCCccccchHHHHHHHHhhhc-ceeEEEEEeCC
Confidence 6888999999987653 3456899999999999999987655433 333334444333 36789999986
Q ss_pred C
Q psy11442 377 E 377 (1362)
Q Consensus 377 ~ 377 (1362)
.
T Consensus 110 ~ 110 (126)
T d1mu2a1 110 K 110 (126)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} | Back information, alignment and structure |
|---|
| >d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]} | Back information, alignment and structure |
|---|
| >d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|