Psyllid ID: psy11447

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MGLKAFKQKLKEIQMSEYDAKVYSEYSLPVQNQQNDQHRDLFSVHVIDNPSPESELALLSSYGPDVPRDTLIRLVRAFGEFRELSDKSLLPYPYSTREAVHIVKHLQEGVLGQHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIKVHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLLT
ccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHccc
cHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccHHHEEEEEccccccccccccccccccccccccccEEEEEccccHHccccHHHHHHHHHHccccccEEEEEEccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHccccHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHc
MGLKAFKQKLKEIQMSEYdakvyseyslpvqnqqndqhrdlfsvhvidnpspeSELALLssygpdvprdTLIRLVRAFGEfrelsdksllpypystrEAVHIVKHLqegvlgqhentrkfngydgrlDRELEAVIMVLEAFQDFDQRIRLDIighsgethsipfvtsiknlprdnkQRLEVIKVHHNnlrntgsdlgtSLEAFQDFDQRISLDiighsgethsipfvtsnnlprdnkQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSdanldrygiaprEMGEALNAEAASVRAYAIFIGSLGDQAKRLTqelpagrgfvcmdlTEIPQILQQIFSASLLT
mglkafkqKLKEIQMSEYDAKVYSEYSLPVQNQQNDQHRDLFSVHVIDNPSPESELALLSSYGPDVPRDTLIRLVRAFGefrelsdksllpypYSTREAVHIVKHLqegvlgqhentrkfNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGhsgethsipfvtsiknlprDNKQRLEVIKVHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGethsipfvtsnnlprdNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLLT
MGLKAFKQKLKEIQMSEYDAKVYSEYSLPVQNQQNDQHRDLFSVHVIDNpspeselallssYGPDVPRDTLIRLVRAFGEFRELSDKSLLPYPYSTREAVHIVKHLQEGVLGQHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIKVHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLLT
****************************************LFSVHVI**********LLSSYGPDVPRDTLIRLVRAFGEFRELSDKSLLPYPYSTREAVHIVKHLQEGVLGQHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIKVHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFS*****
******K*KLKEIQMSEYDAKVYSEYSLPVQNQQNDQHRDLFSVHV*************SSYGPDVPRDTLIRLVRAFGEFRE*****************************QHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIKVHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLLT
MGLKAFKQKLKEIQMSEYDAKVYSEYSLPVQNQQNDQHRDLFSVHVIDNPSPESELALLSSYGPDVPRDTLIRLVRAFGEFRELSDKSLLPYPYSTREAVHIVKHLQEGVLGQHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIKVHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLLT
**LKAFKQKLKEIQMSEYDAKVYSEYSLPVQNQQNDQHRDLFSVHVIDNPSPESELALLSSYGPDVPRDTLIRLVRAFGEFRELSDKSLLPYPYSTREAVHIVKHLQEGVLGQHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIKVHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLL*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLKAFKQKLKEIQMSEYDAKVYSEYSLPVQNQQNDQHRDLFSVHVIDNPSPESELALLSSYGPDVPRDTLIRLVRAFGEFRELSDKSLLPYPYSTREAVHIVKHLQEGVLGQHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIKVHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query360 2.2.26 [Sep-21-2011]
Q8CC881905 von Willebrand factor A d yes N/A 0.516 0.097 0.467 2e-45
A3KMH11905 von Willebrand factor A d yes N/A 0.469 0.088 0.511 2e-45
B0R0T11896 von Willebrand factor A d yes N/A 0.661 0.125 0.385 9e-44
>sp|Q8CC88|VWA8_MOUSE von Willebrand factor A domain-containing protein 8 OS=Mus musculus GN=Vwa8 PE=2 SV=2 Back     alignment and function desciption
 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 133/199 (66%), Gaps = 13/199 (6%)

Query: 172  PRDNKQRLE-VIKVHHNNLRNTGSD---------LGTSLEAFQDFDQRISLDIIGHSGET 221
            P+   +RL  V+ V  +  R  G D         +   +EAF++++++   DI GHSG+ 
Sbjct: 1708 PQQKPKRLRLVVDVSGSMYRFNGVDRRLERSMEAVCMVMEAFENYEEKFKYDIAGHSGDG 1767

Query: 222  HSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQHDDSI 281
            ++I  V  N +P++NKQRLE++K MH H+QFC SGD+TLE    +I+D+TTE A  D+  
Sbjct: 1768 YNIKLVPVNQIPKNNKQRLEILKTMHEHSQFCMSGDHTLEGTEHAIKDITTEEA--DEYF 1825

Query: 282  LIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCM 341
            +I+LSDANL RYGI P    + L ++   V A+AIFIGSLGDQA RL + LPAGR F+ M
Sbjct: 1826 VIILSDANLSRYGINPARFAQILTSD-PQVNAFAIFIGSLGDQAARLQRTLPAGRSFIAM 1884

Query: 342  DLTEIPQILQQIFSASLLT 360
            D  +IPQILQQIF++++L+
Sbjct: 1885 DTKKIPQILQQIFTSTMLS 1903

Mus musculus (taxid: 10090)
>sp|A3KMH1|VWA8_HUMAN von Willebrand factor A domain-containing protein 8 OS=Homo sapiens GN=VWA8 PE=1 SV=2 Back     alignment and function description
>sp|B0R0T1|VWA8_DANRE von Willebrand factor A domain-containing protein 8 OS=Danio rerio GN=si:dkey-18l1.1 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
170035063 1385 conserved hypothetical protein [Culex qu 0.661 0.171 0.402 1e-47
91095331 1083 PREDICTED: similar to c12.2 CG12149-PA [ 0.433 0.144 0.565 8e-47
242016332 1852 conserved hypothetical protein [Pediculu 0.438 0.085 0.577 3e-46
157128966 1391 hypothetical protein AaeL_AAEL011289 [Ae 0.675 0.174 0.384 3e-46
348524102 1903 PREDICTED: uncharacterized protein KIAA0 0.438 0.083 0.546 2e-45
195356415 1386 GM22484 [Drosophila sechellia] gi|194133 0.441 0.114 0.531 2e-45
432931368 1869 PREDICTED: von Willebrand factor A domai 0.516 0.099 0.467 2e-45
442615675 1403 c12.2, isoform B [Drosophila melanogaste 0.441 0.113 0.531 2e-45
24640815 1386 c12.2, isoform A [Drosophila melanogaste 0.441 0.114 0.531 2e-45
195481678 1325 GE17792 [Drosophila yakuba] gi|194189259 0.441 0.12 0.531 2e-45
>gi|170035063|ref|XP_001845391.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876849|gb|EDS40232.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/276 (40%), Positives = 166/276 (60%), Gaps = 38/276 (13%)

Query: 119  KFNGYDGRLDRELEAVI--------MVLEAFQDFDQRIRLDIIGHSGE---THSIPFVTS 167
            + +GYD ++  E  A +        ++L+A Q   +  +      SGE   T  +  +T 
Sbjct: 1112 QMSGYDHKVYTEFSAPVQKQVQQLRVILQALQAKSKERQWQKHQTSGEMDDTKLVEGITG 1171

Query: 168  IKNL-------------PRDNKQRLEV-IKVHHNNLRNTGSD---------LGTSLEAFQ 204
             KN+             P++  +RL++ + V  +  R  G D         +   +EAF 
Sbjct: 1172 EKNIYKKRAEQEPEPGQPQEKPKRLKLLVDVSGSMYRFNGYDGRLDRQLEAVVMVMEAFD 1231

Query: 205  DFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESIR 264
             F+ +I  DI+GHSGE   IPF+ +NN PRD+K+RLE IK+MHAH+QFC SGD+TL + R
Sbjct: 1232 GFETKIKYDIVGHSGEAVEIPFINANNTPRDDKRRLETIKMMHAHSQFCWSGDHTLAAAR 1291

Query: 265  ASIQDLTTE-CAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGD 323
             ++  L  E C   D++I++VLSDANL RYGI+PR + + L  +A  V+AY IFIGSLGD
Sbjct: 1292 NAVDALAKEDC---DEAIVVVLSDANLSRYGISPRNLNDILQKQAPKVQAYVIFIGSLGD 1348

Query: 324  QAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLL 359
            +A+ +T  + AG+ FVCM+L ++PQIL+QIF+AS+L
Sbjct: 1349 EAQLITNNMTAGKSFVCMNLEQLPQILKQIFAASVL 1384

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91095331|ref|XP_975275.1| PREDICTED: similar to c12.2 CG12149-PA [Tribolium castaneum] gi|270017220|gb|EFA13666.1| hypothetical protein TcasGA2_TC004261 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242016332|ref|XP_002428783.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513468|gb|EEB16045.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|157128966|ref|XP_001661571.1| hypothetical protein AaeL_AAEL011289 [Aedes aegypti] gi|108872420|gb|EAT36645.1| AAEL011289-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|348524102|ref|XP_003449562.1| PREDICTED: uncharacterized protein KIAA0564 homolog [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|195356415|ref|XP_002044669.1| GM22484 [Drosophila sechellia] gi|194133250|gb|EDW54766.1| GM22484 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|432931368|ref|XP_004081676.1| PREDICTED: von Willebrand factor A domain-containing protein 8-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|442615675|ref|NP_001259381.1| c12.2, isoform B [Drosophila melanogaster] gi|440216584|gb|AGB95224.1| c12.2, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|24640815|ref|NP_652604.2| c12.2, isoform A [Drosophila melanogaster] gi|22831999|gb|AAN09251.1| c12.2, isoform A [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195481678|ref|XP_002101735.1| GE17792 [Drosophila yakuba] gi|194189259|gb|EDX02843.1| GE17792 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
UNIPROTKB|F1NXF11357 F1NXF1 "Uncharacterized protei 0.438 0.116 0.540 4.1e-60
UNIPROTKB|F1MIT31828 Bt.110663 "Uncharacterized pro 0.438 0.086 0.534 1.1e-58
MGI|MGI:19190081905 Vwa8 "von Willebrand factor A 0.438 0.082 0.527 1.8e-58
UNIPROTKB|F1PD221904 VWA8 "Uncharacterized protein" 0.438 0.082 0.540 3.7e-58
UNIPROTKB|E2QRD01809 VWA8 "von Willebrand factor A 0.438 0.087 0.534 8.5e-58
UNIPROTKB|A3KMH11905 VWA8 "von Willebrand factor A 0.438 0.082 0.534 9.9e-58
RGD|13087721905 Vwa8 "von Willebrand factor A 0.438 0.082 0.534 1.6e-57
FB|FBgn00402341386 c12.2 "c12.2" [Drosophila mela 0.441 0.114 0.531 2.8e-56
ZFIN|ZDB-GENE-070912-4071903 vwa8 "von Willebrand factor A 0.438 0.083 0.527 3.5e-55
WB|WBGene000086941818 F11C1.5 [Caenorhabditis elegan 0.516 0.102 0.401 3.3e-47
UNIPROTKB|F1NXF1 F1NXF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 458 (166.3 bits), Expect = 4.1e-60, Sum P(2) = 4.1e-60
 Identities = 87/161 (54%), Positives = 121/161 (75%)

Query:   200 LEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYT 259
             LEAF++++ +   DI+GHSG+ ++I  V S  +P++NKQRLE++K+MHAHAQFC SGD+T
Sbjct:  1198 LEAFENYEHKFKYDIVGHSGDGYNIALVESGKVPKNNKQRLEILKVMHAHAQFCMSGDHT 1257

Query:   260 LESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIG 319
             LE    +I+++  E A  D+  +IVLSDANL+RYGI P +  + L   +  V A+AIFIG
Sbjct:  1258 LEGTEHAIREIAKEDA--DEYFVIVLSDANLERYGIEPSKFAQVLTTNS-QVNAFAIFIG 1314

Query:   320 SLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLLT 360
             SLGDQA RL + LPAGR F+ MD  EIPQILQQIF++++L+
Sbjct:  1315 SLGDQADRLQRTLPAGRSFIAMDTKEIPQILQQIFTSTMLS 1355
GO:0016887 "ATPase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
UNIPROTKB|F1MIT3 Bt.110663 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1919008 Vwa8 "von Willebrand factor A domain containing 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PD22 VWA8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRD0 VWA8 "von Willebrand factor A domain-containing protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A3KMH1 VWA8 "von Willebrand factor A domain-containing protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1308772 Vwa8 "von Willebrand factor A domain containing 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0040234 c12.2 "c12.2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-407 vwa8 "von Willebrand factor A domain containing 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00008694 F11C1.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A3KMH1VWA8_HUMANNo assigned EC number0.51160.46940.0887yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
cd01455191 cd01455, vWA_F11C1-5a_type, Von Willebrand factor 3e-70
cd01455191 cd01455, vWA_F11C1-5a_type, Von Willebrand factor 5e-25
>gnl|CDD|238732 cd01455, vWA_F11C1-5a_type, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information 
 Score =  217 bits (554), Expect = 3e-70
 Identities = 85/160 (53%), Positives = 125/160 (78%), Gaps = 2/160 (1%)

Query: 200 LEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYT 259
           +EAF  F+ +I  DIIGHSG+   +PFV +N+ P++NK+RLE +K+MHAH+QFC SGD+T
Sbjct: 34  MEAFDGFEDKIQYDIIGHSGDGPCVPFVKTNHPPKNNKERLETLKMMHAHSQFCWSGDHT 93

Query: 260 LESIRASIQDLTTECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIG 319
           +E+   +I++L  +    D++I+IVLSDANL+RYGI P+++ +AL A   +V A+ IFIG
Sbjct: 94  VEATEFAIKELAAK-EDFDEAIVIVLSDANLERYGIQPKKLADAL-AREPNVNAFVIFIG 151

Query: 320 SLGDQAKRLTQELPAGRGFVCMDLTEIPQILQQIFSASLL 359
           SL D+A +L +ELPAG+ FVCMD +E+P I+QQIF+++LL
Sbjct: 152 SLSDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTSTLL 191

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the functions of the members of this subgroup. The members of this subgroup are fused to the ancient AAA domain. Length = 191
>gnl|CDD|238732 cd01455, vWA_F11C1-5a_type, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 360
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 100.0
KOG1808|consensus1856 99.9
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.54
KOG1808|consensus 1856 98.47
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 97.58
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 97.4
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 97.34
cd01470198 vWA_complement_factors Complement factors B and C2 97.01
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 96.88
PRK13685326 hypothetical protein; Provisional 96.75
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 96.34
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 96.25
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 96.18
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 96.01
PF00092178 VWA: von Willebrand factor type A domain; InterPro 95.77
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 95.61
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 95.55
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 95.12
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 94.98
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 94.87
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 94.85
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 94.69
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 93.9
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 93.57
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 92.93
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 91.91
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 91.87
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 91.42
COG4548637 NorD Nitric oxide reductase activation protein [In 91.09
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 90.62
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 89.68
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 85.58
TIGR03788 596 marine_srt_targ marine proteobacterial sortase tar 82.51
PF14062111 DUF4253: Domain of unknown function (DUF4253) 82.3
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 81.17
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 80.71
PF0840686 CbbQ_C: CbbQ/NirQ/NorQ C-terminal ; InterPro: IPR0 80.7
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information 
Probab=100.00  E-value=3.5e-48  Score=353.73  Aligned_cols=190  Identities=55%  Similarity=0.971  Sum_probs=184.6

Q ss_pred             hhhhhhHHHhhhhhccccCCchhhHHHHHHHHHHHHHhhhhhccceeeeeccCCCCccccccccccCCChhhHHHHHHHh
Q psy11447        104 KHLQEGVLGQHENTRKFNGYDGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGETHSIPFVTSIKNLPRDNKQRLEVIK  183 (360)
Q Consensus       104 KhL~~~v~dv~~nv~rFd~yD~rl~R~lE~v~~Vme~~~~~e~kl~~di~~HSG~~~siP~v~kvk~~are~k~RL~ei~  183 (360)
                      ||| -.+.|+|+|||+|++||+++.+.||++.+                                               
T Consensus         1 ~~l-~lavDlSgSM~~~~~~dg~~~~RL~a~k~-----------------------------------------------   32 (191)
T cd01455           1 KRL-KLVVDVSGSMYRFNGYDGRLDRSLEAVVM-----------------------------------------------   32 (191)
T ss_pred             Cce-EEEEECcHhHHHHhccCCccccHHHHHHH-----------------------------------------------
Confidence            566 77899999999999999999999999999                                               


Q ss_pred             hccccccccCCchhhHHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhccccCCcchHHHH
Q psy11447        184 VHHNNLRNTGSDLGTSLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQFCASGDYTLESI  263 (360)
Q Consensus       184 m~~~~lrfn~~DL~rvMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qfc~sGD~Tlea~  263 (360)
                                     |||+|.+|.+|++||++||+|+++.+|||+.+.||++|++||++++.|++|+||||+||+|.+|+
T Consensus        33 ---------------v~~~f~~f~~~r~~DriG~~g~~~~~~~lt~d~p~t~d~~~~~~l~~~l~~~q~g~ag~~TadAi   97 (191)
T cd01455          33 ---------------VMEAFDGFEDKIQYDIIGHSGDGPCVPFVKTNHPPKNNKERLETLKMMHAHSQFCWSGDHTVEAT   97 (191)
T ss_pred             ---------------HHHHHHHHHHhCccceeeecCcccccCccccccCcccchhHHHHHHHHHHhcccCccCccHHHHH
Confidence                           99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhcccCCCeEEEEEecCCccccCCChhHHHHHHhcCcccccEEEEEecCchHHHHHHHhhCCCCceEEecC
Q psy11447        264 RASIQDLT-TECAQHDDSILIVLSDANLDRYGIAPREMGEALNAEAASVRAYAIFIGSLGDQAKRLTQELPAGRGFVCMD  342 (360)
Q Consensus       264 ~~ai~~~a-~~~~daDe~fVivlSDANL~RYgI~p~~l~~~l~~~~p~V~a~~IfIgslgdqA~~l~~~Lp~Gr~fv~~d  342 (360)
                      ..||+.+. +.  ++++++||+|||+|..+|+|+|.+.++.|.++ ++|+.|.|+||+.++++.++..++|.|+.|+|.|
T Consensus        98 ~~av~rl~~~~--~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~-~gV~iytIgiG~~d~~~l~~iA~~tgG~~F~A~d  174 (191)
T cd01455          98 EFAIKELAAKE--DFDEAIVIVLSDANLERYGIQPKKLADALARE-PNVNAFVIFIGSLSDEADQLQRELPAGKAFVCMD  174 (191)
T ss_pred             HHHHHHHHhcC--cCCCcEEEEEeCCCcCCCCCChHHHHHHHHHh-CCCEEEEEEecCCCHHHHHHHHhCCCCcEEEeCC
Confidence            99999997 77  99999999999999999999999999999997 9999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhccC
Q psy11447        343 LTEIPQILQQIFSASLL  359 (360)
Q Consensus       343 t~~lP~il~qIf~s~~l  359 (360)
                      +++||+|+++||+|++|
T Consensus       175 ~~~L~~iy~~I~~~~~~  191 (191)
T cd01455         175 TSELPHIMQQIFTSTLL  191 (191)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999986

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
>KOG1808|consensus Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>KOG1808|consensus Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>PF14062 DUF4253: Domain of unknown function (DUF4253) Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>PF08406 CbbQ_C: CbbQ/NirQ/NorQ C-terminal ; InterPro: IPR013615 This domain is found at the C terminus of proteins of the CbbQ/NirQ/NorQ family of proteins which play a role in the post-translational activation of Rubisco [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query360
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 59/415 (14%), Positives = 122/415 (29%), Gaps = 129/415 (31%)

Query: 2   GLKAFKQKLKEIQMSEYD---AKVYSEYSLPVQNQQ--NDQHRDLFSVHVIDNPSPESEL 56
             +  ++ ++E+    Y    + + +E   P    +   +Q   L++    DN       
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN----DNQ------ 124

Query: 57  ALLSSYGPDVPRDTLIRLVRAFGEFRELSDKSLLPYPYSTREAVHIVKHLQEGVLG---- 112
            + + Y  +V R      +R     + L    L P          ++     GVLG    
Sbjct: 125 -VFAKY--NVSRLQPYLKLR-----QAL--LELRPAKN-------VLID---GVLGSGKT 164

Query: 113 --------QHENTRKFNG--Y---DGRLDRELEAVIMVLEAFQDFDQRIRLDIIGHSGET 159
                    ++   K +   +       +   E V+ +L+         ++D    S   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLL-----YQIDPNWTSRSD 218

Query: 160 HSIPFVTSIKNLPRDNKQRLEVIKVHHNNL---RNTGSDLGTSLEAFQDFDQRISLDIIG 216
           HS      I ++ +   +RL   K + N L    N   +      AF +   +I      
Sbjct: 219 HSSNIKLRIHSI-QAELRRLLKSKPYENCLLVLLNV-QNAKA-WNAF-NLSCKI------ 268

Query: 217 HSGETHSIPFVTSNNLPRD-------NKQRLEVIKIMHAHAQFCASGDYTLE----SIRA 265
                     +T+    R        +      I + H       + D         +  
Sbjct: 269 ---------LLTT----RFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDC 313

Query: 266 SIQDLTTE-CAQHDDSILIV---LSDA-----NLDRYGIAP--REMGEALNA-EAASVRA 313
             QDL  E    +   + I+   + D      N            +  +LN  E A  R 
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 314 Y----AIFIGSLGDQAKRLTQELPAGRGFVC-----MDLTEIPQILQQIFSASLL 359
                ++F       A      +P     +      +  +++  ++ ++   SL+
Sbjct: 374 MFDRLSVF----PPSAH-----IPTIL--LSLIWFDVIKSDVMVVVNKLHKYSLV 417

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 98.05
2b2x_A223 Integrin alpha-1; computational design, antibody-a 97.64
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 97.52
3ibs_A218 Conserved hypothetical protein BATB; structural ge 97.5
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 97.47
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 97.46
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 97.35
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 97.34
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 97.29
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 97.2
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 97.09
4fx5_A 464 VON willebrand factor type A; structural genomics, 97.05
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 97.03
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 96.5
3hrz_D 741 Complement factor B; serine protease, glycosilated 95.96
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 95.87
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 95.7
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 95.57
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 95.51
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 94.82
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 93.88
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 90.12
3rag_A 242 Uncharacterized protein; structural genomics, PSI- 87.02
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 81.66
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
Probab=98.05  E-value=5.2e-05  Score=65.23  Aligned_cols=152  Identities=13%  Similarity=0.207  Sum_probs=86.3

Q ss_pred             HHHHhhccccceeEeeeeccCCCCccccccCCCCCCCchHHHHHHHHHHHhhcc----ccCCcchHHHHHHHHHHHHhhc
Q psy11447        199 SLEAFQDFDQRISLDIIGHSGETHSIPFVTSNNLPRDNKQRLEVIKIMHAHAQF----CASGDYTLESIRASIQDLTTEC  274 (360)
Q Consensus       199 vMEaf~g~e~k~~ydivGHSGd~~~i~lV~~~~~Pk~~keRl~vl~~M~aH~Qf----c~sGD~Tlea~~~ai~~~a~~~  274 (360)
                      +++.|..+...-+.-||.-|++...  .+....|...+++.   ++.....-++    +--|=+|-.|++.|.+.+....
T Consensus        43 ~i~~l~~~~~~~~v~lv~f~~~~~~--~~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~  117 (223)
T 1q0p_A           43 LIEKVASYGVKPRYGLVTYATYPKI--WVKVSEADSSNADW---VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD  117 (223)
T ss_dssp             HHHHHHTTTCCCEEEEEEESSSEEE--EECTTSGGGGCHHH---HHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTT
T ss_pred             HHHHHhcCCCCceEEEEEecCccce--eeccccCCCCCHHH---HHHHHHhcccccccCCCCccHHHHHHHHHHHhhccc
Confidence            6666766666667778887776533  23344444444332   2222233333    3467788999999999986431


Q ss_pred             c------cCCCeEEEEEecCCccccCCChhHHHHHHhc-----------CcccccEEEEEecCch--HHHHHHHhhCCCC
Q psy11447        275 A------QHDDSILIVLSDANLDRYGIAPREMGEALNA-----------EAASVRAYAIFIGSLG--DQAKRLTQELPAG  335 (360)
Q Consensus       275 ~------daDe~fVivlSDANL~RYgI~p~~l~~~l~~-----------~~p~V~a~~IfIgslg--dqA~~l~~~Lp~G  335 (360)
                      .      ..-..+||++||..-. .|..|....+.+..           ....|..|+|-||+--  ++-+.|+ ..|.|
T Consensus       118 ~~~~~~~~~~~~~iillTDG~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA-~~~~G  195 (223)
T 1q0p_A          118 DVPPEGWNRTRHVIILMTDGLHN-MGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALA-SKKDN  195 (223)
T ss_dssp             SSCCTTGGGCEEEEEEEECSCCC-SSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHS-CCCTT
T ss_pred             cccccccccCCeEEEEECCCCCC-CCCChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHh-cCCCC
Confidence            0      1245789999998654 34478777766632           2267999999999732  2344444 45668


Q ss_pred             --ceEEecCCCchHHHHHHHHHhc
Q psy11447        336 --RGFVCMDLTEIPQILQQIFSAS  357 (360)
Q Consensus       336 --r~fv~~dt~~lP~il~qIf~s~  357 (360)
                        +.|.+.|..+|+.++++|+..|
T Consensus       196 ~~~~~~~~~~~~L~~~~~~i~~~s  219 (223)
T 1q0p_A          196 EQHVFKVKDMENLEDVFYQMIDES  219 (223)
T ss_dssp             CCCEEETTC---------------
T ss_pred             CceEEEcCCHHHHHHHHHHHhccc
Confidence              9999999999999999998654
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query360
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 97.52
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 95.9
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 95.71
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 94.96
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 94.51
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 94.42
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 93.04
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 91.04
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 90.48
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 90.12
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 84.98
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 84.55
d1p6qa_129 CheY protein {Sinorhizobium meliloti, CheY2 [TaxId 84.12
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 80.81
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00043  Score=57.31  Aligned_cols=153  Identities=12%  Similarity=0.186  Sum_probs=80.1

Q ss_pred             HHHHhhccccceeEeeeeccCCCCc-cccccCCCCCCCchHH-HHHHHHHHHhhccccCCcchHHHHHHHHHHHHhhccc
Q psy11447        199 SLEAFQDFDQRISLDIIGHSGETHS-IPFVTSNNLPRDNKQR-LEVIKIMHAHAQFCASGDYTLESIRASIQDLTTECAQ  276 (360)
Q Consensus       199 vMEaf~g~e~k~~ydivGHSGd~~~-i~lV~~~~~Pk~~keR-l~vl~~M~aH~Qfc~sGD~Tlea~~~ai~~~a~~~~d  276 (360)
                      +++.|.....+.++-|+..|+.... ++|-   .....++.. .+.++.+--..-...-|.++-.|.+.|.+.+.....-
T Consensus        29 li~~l~~~~~~~rv~lv~f~~~~~~~~~l~---~~~~~~~~~l~~~i~~i~~~~~~~~g~t~~~~al~~a~~~~~~~~~~  105 (209)
T d1q0pa_          29 LIEKVASYGVKPRYGLVTYATYPKIWVKVS---EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV  105 (209)
T ss_dssp             HHHHHHTTTCCCEEEEEEESSSEEEEECTT---SGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSS
T ss_pred             HHHhcccCCCCcEEEEEEecCceeEEecCc---cchhhHHHHHHHHHHHhhhccccCCCCchHHHHHHHHHHHHHhhhcc
Confidence            7777776677888888888876542 3332   222222332 3455555333333455678899999999888432000


Q ss_pred             ------CCCeEEEEEecCCccccCCChhHHHHHHhc-----------CcccccEEEEEecCchHHHH--HHHhhCCC--C
Q psy11447        277 ------HDDSILIVLSDANLDRYGIAPREMGEALNA-----------EAASVRAYAIFIGSLGDQAK--RLTQELPA--G  335 (360)
Q Consensus       277 ------aDe~fVivlSDANL~RYgI~p~~l~~~l~~-----------~~p~V~a~~IfIgslgdqA~--~l~~~Lp~--G  335 (360)
                            --..+||++||.+=.- |-.|....+.+..           ....|+.|+|-||+--++.+  .|+. -|.  +
T Consensus       106 ~~~~~~~~~kvvvl~TDG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~vgvg~~~~~~~L~~iAs-~~~~~~  183 (209)
T d1q0pa_         106 PPEGWNRTRHVIILMTDGLHNM-GGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS-KKDNEQ  183 (209)
T ss_dssp             CCTTGGGCEEEEEEEECSCCCS-SSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSC-CCTTCC
T ss_pred             CccccCCCceEEEEEcCCCccC-CCChHHHHHHHHHhhhhHHHHHHHHhcCCceEEecCCccCCHHHHHHHHc-CCCCCe
Confidence                  0126899999976443 3333333333211           11457788898987554433  3333 343  4


Q ss_pred             ceEEecCCCchHHHHHHHHHh
Q psy11447        336 RGFVCMDLTEIPQILQQIFSA  356 (360)
Q Consensus       336 r~fv~~dt~~lP~il~qIf~s  356 (360)
                      +.|.+.|..+|+++++||+..
T Consensus       184 ~~f~~~~~~~L~~~~~~ii~~  204 (209)
T d1q0pa_         184 HVFKVKDMENLEDVFYQMIDE  204 (209)
T ss_dssp             CEEETTC--------------
T ss_pred             eEEEeCCHHHHHHHHHHHHHh
Confidence            589999999999999999864
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure