Psyllid ID: psy11469

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQASGNSIFDP
Secondary Structure (PSIPRED)
ccEEEEcccccEEEcccHHHHHHHHHcccccccEEcccccEEEcccccccccccccEEEcccccccccccccccEEcEEEEccccccccccccccEEcccccEEEEEEEEccHHHHHcccccccccEEEccccccEEEEEEccccccHHHHHHccccccccccccEEEEEccccccccccHHHHHHHHHHHccEEEEEEccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEccccHHHHHHHHHHHHccccccEcccccEEEEccccccccEEEEcEcccccccEcccccccEEEEEEEEEcccEEEEEcccccEEEccccEEEEEEEHHHcccccccccccccccHHHcccccccEEEEEccccHHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mpkfflgenpfecdcKMEWLQRAHEIhkdgiypeiADLESLYCRMVYEenlitydnifiADSSKFLCDYeehcfslcrcceygacdcrmscpfnctcyndqawttnivdcsnsqynhvplfvpmdattiylddtpcqayVIYSlkdepfvkqillpglafkdpavklrvhhrdlnpnlistaDFVTNSIERSEKVIMVLSRAFiygdwsrpefksalngslmrhrkplfiimlpphsnilvimPMSIYHLSVLLqdnqasgnsifdp
Flexible Loop (DISEMBL)
mpkfflgenpFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHhrdlnpnlistadfvtnsiERSEKVIMVLSRAfiygdwsrpeFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDnqasgnsifdp
Low Complexity Region (SEG)
MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQASGNSIFDP
Disordered region (IsUnstruct)
***FFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQ************
Disordered Region (DISOPRED)
MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQAS****FD*
Disordered Region (DISEMBL)
MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQA********
Disordered Region (DISPRO)
MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQ*S*N*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQASGNSIFDP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q9QX05	835	Toll-like receptor 4 OS=R	yes	N/A	0.479	0.153	0.295	8e-09
Q8SPE9	828	Toll-like receptor 4 OS=P	N/A	N/A	0.423	0.136	0.300	1e-08
Q9WV82	838	Toll-like receptor 4 OS=C	yes	N/A	0.479	0.152	0.295	1e-08
O00206	839	Toll-like receptor 4 OS=H	yes	N/A	0.423	0.134	0.300	2e-08
Q8SPE8	837	Toll-like receptor 4 OS=G	N/A	N/A	0.423	0.135	0.300	2e-08
Q9TSP2	826	Toll-like receptor 4 OS=P	N/A	N/A	0.423	0.136	0.300	2e-08
Q9GL65	841	Toll-like receptor 4 OS=B	yes	N/A	0.423	0.134	0.300	3e-08
Q9TTN0	839	Toll-like receptor 4 OS=P	N/A	N/A	0.423	0.134	0.300	3e-08
Q2V898	841	Toll-like receptor 4 OS=B	N/A	N/A	0.423	0.134	0.300	3e-08
Q9QUK6	835	Toll-like receptor 4 OS=M	yes	N/A	0.423	0.135	0.300	4e-08

>sp|Q9QX05|TLR4_RAT Toll-like receptor 4 OS=Rattus norvegicus GN=Tlr4 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 4/132 (3%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS ++E +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 674 AFVIYSSQNEDWVRNELVKNLEEGVPRFQLCLHYRDFIPGVAIAANIIQEGFHKSRKVIV 733

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL----SVL 253
           V+SR FI   W   E++ A     +  R  +  I+L      L+   + +Y L    + L
Sbjct: 734 VVSRHFIQSRWCIFEYEIAQTWQFLSSRSGIIFIVLEKVEKSLLRQQVELYRLLSRNTYL 793

Query: 254 LQDNQASGNSIF 265
             ++ A G  IF
Sbjct: 794 EWEDNALGRHIF 805

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.
Rattus norvegicus (taxid: 10116)

>sp|Q8SPE9|TLR4_PONPY Toll-like receptor 4 OS=Pongo pygmaeus GN=TLR4 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 674 AFVIYSSQDEDWVRNELVKNLEEGVPTFQLCLHYRDFIPGVAIAANIIHEGFHKSRKVIV 733

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL 250
           V+S+ FI   W   E++ A     +  R  +  I+L      L+   + +Y L
Sbjct: 734 VVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRL 786

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.

Pongo pygmaeus (taxid: 9600)

>sp|Q9WV82|TLR4_CRIGR Toll-like receptor 4 OS=Cricetulus griseus GN=TLR4 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 674 AFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIQEGFHKSRKVIV 733

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL----SVL 253
           V+SR FI   W   E++ A     +     +  I+L      L+   + +Y L    + L
Sbjct: 734 VVSRHFIQSRWCIFEYEIAQTWQFLSSHSGIIFIVLEKVEKSLLKQQVELYRLLSRNTYL 793

Query: 254 LQDNQASGNSIF 265
             ++ A G  IF
Sbjct: 794 EWEDNALGRHIF 805

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.

Cricetulus griseus (taxid: 10029)

>sp|O00206|TLR4_HUMAN Toll-like receptor 4 OS=Homo sapiens GN=TLR4 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 676 AFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKSRKVIV 735

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL 250
           V+S+ FI   W   E++ A     +  R  +  I+L      L+   + +Y L
Sbjct: 736 VVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRL 788

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Also involved in LPS-independent inflammatory responses triggered by Ni(2+). These responses require non-conserved histidines and are, therefore, species-specific.

Homo sapiens (taxid: 9606)

>sp|Q8SPE8|TLR4_GORGO Toll-like receptor 4 OS=Gorilla gorilla gorilla GN=TLR4 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 674 AFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKSRKVIV 733

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL 250
           V+S+ FI   W   E++ A     +  R  +  I+L      L+   + +Y L
Sbjct: 734 VVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRL 786

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q9TSP2|TLR4_PAPAN Toll-like receptor 4 OS=Papio anubis GN=TLR4 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 676 AFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKSRKVIV 735

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL 250
           V+S+ FI   W   E++ A     +  R  +  I+L      L+   + +Y L
Sbjct: 736 VVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRL 788

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.

Papio anubis (taxid: 9555)

>sp|Q9GL65|TLR4_BOVIN Toll-like receptor 4 OS=Bos taurus GN=TLR4 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 677 AFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIQEGFHKSRKVIV 736

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL 250
           V+S+ FI   W   E++ A     +  R  +  I+L      L+   + +Y L
Sbjct: 737 VVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKLEKSLLRQQVELYRL 789

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.

Bos taurus (taxid: 9913)

>sp|Q9TTN0|TLR4_PANPA Toll-like receptor 4 OS=Pan paniscus GN=TLR4 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 676 AFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKSRKVIV 735

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL 250
           V+S+ FI   W   E++ A     +  R  +  I+L      L+   + +Y L
Sbjct: 736 VVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRRQVELYRL 788

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.

Pan paniscus (taxid: 9597)

>sp|Q2V898|TLR4_BOSTR Toll-like receptor 4 OS=Boselaphus tragocamelus GN=TLR4 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct: 677 AFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIQEGFHKSRKVIV 736

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL 250
           V+S+ FI   W   E++ A     +  R  +  I+L      L+   + +Y L
Sbjct: 737 VVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKLEKSLLRQQVELYRL 789

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.

Boselaphus tragocamelus (taxid: 9917)

>sp|Q9QUK6|TLR4_MOUSE Toll-like receptor 4 OS=Mus musculus GN=Tlr4 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+VIYS ++E +V+  L+  L    P   L +H+RD  P +   A+ +     +S KVI+
Sbjct: 674 AFVIYSSQNEDWVRNELVKNLEEGVPRFHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIV 733

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL 250
           V+SR FI   W   E++ A     +  R  +  I+L      L+   + +Y L
Sbjct: 734 VVSRHFIQSRWCIFEYEIAQTWQFLSSRSGIIFIVLEKVEKSLLRQQVELYRL 786

Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
321457116	1164	hypothetical protein DAPPUDRAFT_10255 [D	0.494	0.113	0.503	7e-40
357607081	1222	putative toll [Danaus plexippus]	0.490	0.107	0.530	2e-39
242006518	1241	toll, putative [Pediculus humanus corpor	0.629	0.135	0.426	3e-39
345484039	1253	PREDICTED: LOW QUALITY PROTEIN: protein	0.486	0.103	0.5	4e-39
321453777	1305	hypothetical protein DAPPUDRAFT_65779 [D	0.632	0.129	0.426	4e-39
345489299	1217	PREDICTED: protein slit [Nasonia vitripe	0.490	0.107	0.484	2e-38
91076464	1272	PREDICTED: similar to toll [Tribolium ca	0.490	0.102	0.5	3e-38
66518004	1314	PREDICTED: protein slit [Apis mellifera]	0.490	0.099	0.488	4e-38
242006526	1297	toll, putative [Pediculus humanus corpor	0.490	0.101	0.492	7e-38
193713884	1293	PREDICTED: slit homolog 2 protein-like i	0.490	0.101	0.5	7e-38

>gi|321457116|gb|EFX68209.1| hypothetical protein DAPPUDRAFT_10255 [Daphnia pulex]

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 69/137 (50%), Positives = 93/137 (67%), Gaps = 5/137 (3%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +P+F+LG NPF+CDC MEWLQR + ++  G YP   DL+S+YCR+ Y     +   +  A
Sbjct: 642 LPEFYLGGNPFQCDCDMEWLQRINALNNAGQYPRAMDLDSIYCRLSYGRGSRSVTPLVEA 701

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQ-----Y 115
            SS FLC Y  HCF+LC CC++ ACDC M+CP NC+CY+DQ+W+TN+VDCS         
Sbjct: 702 TSSDFLCPYRAHCFALCHCCDFDACDCEMTCPTNCSCYHDQSWSTNVVDCSGGGGGGDLL 761

Query: 116 NHVPLFVPMDATTIYLD 132
             +P  +PMDAT +YLD
Sbjct: 762 TDIPSRIPMDATDVYLD 778

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357607081|gb|EHJ65350.1| putative toll [Danaus plexippus]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +P+F++G NPF+CDC MEWLQR +++     +P + DLES+YC+++Y     TY  +  A
Sbjct: 635 LPEFYIGGNPFQCDCTMEWLQRINKLDHLRQHPRVMDLESIYCKLLYNRER-TYIPLIEA 693

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
           +SS+FLC Y+ HCF+LC CC++ ACDC M+CP NCTCY+DQ W+ NIVDCS + Y  +P 
Sbjct: 694 ESSQFLCTYKTHCFTLCHCCDFDACDCEMTCPSNCTCYHDQPWSANIVDCSGAGYAEIPN 753

Query: 121 FVPMDATTIYLD 132
            +PMDAT +YLD
Sbjct: 754 TIPMDATELYLD 765

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006518|ref|XP_002424097.1| toll, putative [Pediculus humanus corporis] gi|212507403|gb|EEB11359.1| toll, putative [Pediculus humanus corporis]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 117/176 (66%), Gaps = 8/176 (4%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +P+F++G NP+ECDC MEWLQ++++ ++    P++ DLES+YC+++Y     +Y  +   
Sbjct: 678 LPEFYIGGNPYECDCTMEWLQKSNQENRARNQPKLMDLESIYCKLMYNRGR-SYIPLVEV 736

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQY-NHVP 119
           +SS+FLC YE HCF+LC CC++ ACDC+M+CP NCTCY+DQ+W+ N+VDC+   Y N +P
Sbjct: 737 ESSRFLCQYEFHCFALCHCCDFDACDCKMTCPNNCTCYHDQSWSANVVDCTAKGYVNALP 796

Query: 120 LFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLN 175
             +PMDAT +YLD    QA     +    F+ +  L  L      +++ +H+R  N
Sbjct: 797 ERIPMDATQLYLDGNDLQA-----IGSHAFIGRKKLKILYMNSSNIEI-IHNRTFN 846

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484039|ref|XP_003424932.1| PREDICTED: LOW QUALITY PROTEIN: protein toll [Nasonia vitripennis]

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 2/132 (1%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +P+F++G NPF CDC  EWLQR + +     +P + DL+S+YCR+ Y+    ++  +  A
Sbjct: 724 LPEFYIGGNPFVCDCTTEWLQRINNLQLRQ-HPRVMDLQSVYCRLPYDRRR-SFVPLLEA 781

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
             S+FLC Y  HCF+LC CC++ ACDC M+CP NCTCY+DQ+W  N+VDCS+S Y  +P 
Sbjct: 782 KPSQFLCGYSAHCFALCHCCDFDACDCEMTCPGNCTCYHDQSWAANVVDCSSSGYKRLPG 841

Query: 121 FVPMDATTIYLD 132
            +PMDAT +YLD
Sbjct: 842 RLPMDATEVYLD 853

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321453777|gb|EFX64981.1| hypothetical protein DAPPUDRAFT_65779 [Daphnia pulex]

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 7/176 (3%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEEN-LITYDNIFI 59
           +P+F++G NPF+CDC MEWLQR +       +P + DLE +YCR+++      +Y  +  
Sbjct: 695 LPEFYIGGNPFQCDCNMEWLQRINTPDHLRQHPRVMDLEGIYCRLLHSSRPQRSYVPLVE 754

Query: 60  ADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVP 119
           A  S FLC YE HCF+LC CC++ ACDC M+CP NCTCY+DQ+W+ NIVDCS   + ++P
Sbjct: 755 ATPSNFLCTYETHCFALCHCCDFDACDCEMTCPTNCTCYHDQSWSANIVDCSGGSHPNLP 814

Query: 120 LFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLN 175
             +PMD T +YLD    +A     L    F+ +  L  L      V++ +H+R  N
Sbjct: 815 ERIPMDVTELYLDGAQLRA-----LSSHKFIGRKNLRLLFLNSSGVEI-IHNRTFN 864

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489299|ref|XP_001601629.2| PREDICTED: protein slit [Nasonia vitripennis]

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/132 (48%), Positives = 90/132 (68%), Gaps = 1/132 (0%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +P+FF+GENP  CDC MEWL R +E+ +   +P + DLE + C MV+         +   
Sbjct: 532 LPQFFIGENPLLCDCTMEWLLRINELSRSRQHPRVLDLEEVSCDMVHGR-AAPKRPLLSL 590

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
            S  F+C Y+ HCF++C CC++ ACDC M+CP NC+CY+D +W++N+VDCSN+ Y  VP 
Sbjct: 591 KSKDFVCRYQSHCFAICHCCDFDACDCEMTCPDNCSCYHDHSWSSNVVDCSNAGYRFVPE 650

Query: 121 FVPMDATTIYLD 132
            +PMDAT IYLD
Sbjct: 651 RIPMDATEIYLD 662

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076464|ref|XP_971999.1| PREDICTED: similar to toll [Tribolium castaneum] gi|270002905|gb|EEZ99352.1| toll-6 [Tribolium castaneum]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 98/132 (74%), Gaps = 1/132 (0%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +P+F++G NP++CDC MEWLQR +++     +P + DLES+YC+++Y  +   Y  +  A
Sbjct: 700 LPEFYIGGNPYQCDCTMEWLQRINKLDHLRQHPRVMDLESIYCKLLYNRD-SNYLPLIDA 758

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
           +SS+FLC Y+ HCF+LC CC++ ACDC M+CP NCTCY+DQ+W+ N+V+CS   Y  +P 
Sbjct: 759 ESSQFLCTYKTHCFALCHCCDFDACDCEMTCPTNCTCYHDQSWSANVVECSGVGYTEMPS 818

Query: 121 FVPMDATTIYLD 132
            +PMDAT +YLD
Sbjct: 819 RIPMDATEVYLD 830

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66518004|ref|XP_393717.2| PREDICTED: protein slit [Apis mellifera]

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/133 (48%), Positives = 93/133 (69%), Gaps = 2/133 (1%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIH-KDGIYPEIADLESLYCRMVYEENLITYDNIFI 59
           +P+F++G+NP  C+C MEWL R +E+  +   +P + DL+S+ C MV+         +  
Sbjct: 672 LPQFYIGDNPILCNCTMEWLPRINEMAARLRQHPRVMDLDSVTCEMVHAR-ATPRRPLLS 730

Query: 60  ADSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVP 119
             S  F+C YE HCF+LC CC++ ACDC M+CP NC+CY+D +W++N+VDCSN+ YNHVP
Sbjct: 731 LKSKDFVCRYEAHCFALCHCCDFDACDCEMTCPDNCSCYHDHSWSSNVVDCSNAGYNHVP 790

Query: 120 LFVPMDATTIYLD 132
             +PMDAT IYLD
Sbjct: 791 ERIPMDATEIYLD 803

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006526|ref|XP_002424101.1| toll, putative [Pediculus humanus corporis] gi|212507407|gb|EEB11363.1| toll, putative [Pediculus humanus corporis]

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 101/132 (76%), Gaps = 1/132 (0%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +P+F++G NPF+CDC MEWLQR + +     +P + DLE +YC+++Y  + + Y ++   
Sbjct: 708 LPEFYVGGNPFQCDCTMEWLQRINNLDHLRQHPRVMDLEGIYCKLLYNRDKM-YVSLVDV 766

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
           +SS+FLC Y+ HCF+LC CC++ ACDC+M+CP NCTCY+DQ+W++NIV+CS + Y ++P 
Sbjct: 767 ESSQFLCPYKFHCFTLCHCCDFDACDCKMTCPSNCTCYHDQSWSSNIVECSAAGYTNMPD 826

Query: 121 FVPMDATTIYLD 132
            +PMDAT +Y+D
Sbjct: 827 RIPMDATEVYID 838

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193713884|ref|XP_001950762.1| PREDICTED: slit homolog 2 protein-like isoform 1 [Acyrthosiphon pisum] gi|328726596|ref|XP_003248960.1| PREDICTED: slit homolog 2 protein-like isoform 2 [Acyrthosiphon pisum]

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 95/132 (71%), Gaps = 1/132 (0%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +P+F++G+NP +CDC  EWLQR +++     +P I D++S+ CR+V+ +    Y  +   
Sbjct: 679 LPQFYIGDNPLKCDCTTEWLQRINQLSVQRQHPRIMDMDSIMCRLVHSKTE-KYKPLLDL 737

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
             S+FLC+YE HCFS+C CC++ ACDC M+CP NCTCY+D  W++NIVDCSN+ Y  +P 
Sbjct: 738 KPSQFLCEYESHCFSVCECCDFDACDCEMTCPDNCTCYHDHVWSSNIVDCSNAGYKSIPA 797

Query: 121 FVPMDATTIYLD 132
            +PMDAT IYLD
Sbjct: 798 RIPMDATEIYLD 809

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
FB|FBgn0029114	1346	Tollo "Tollo" [Drosophila mela	0.483	0.095	0.436	7.2e-47
FB|FBgn0034476	1446	Toll-7 "Toll-7" [Drosophila me	0.486	0.089	0.462	3.5e-41
FB|FBgn0004364	1389	18w "18 wheeler" [Drosophila m	0.486	0.093	0.416	7e-37
FB|FBgn0036494	1514	Toll-6 "Toll-6" [Drosophila me	0.486	0.085	0.469	6.9e-36
WB|WBGene00006593	1221	tol-1 [Caenorhabditis elegans	0.887	0.194	0.281	5.7e-13
WB|WBGene00011454	747	lron-14 [Caenorhabditis elegan	0.501	0.179	0.269	3.7e-09
UNIPROTKB|Q9WV82	838	TLR4 "Toll-like receptor 4" [C	0.479	0.152	0.295	4.8e-08
FB|FBgn0262473	1097	Tl "Toll" [Drosophila melanoga	0.370	0.090	0.323	1e-07
RGD|3870	835	Tlr4 "toll-like receptor 4" [R	0.479	0.153	0.295	3.1e-07
UNIPROTKB|Q9QX05	835	Tlr4 "Toll-like receptor 4" [R	0.479	0.153	0.295	3.1e-07

FB|FBgn0029114 Tollo "Tollo" [Drosophila melanogaster (taxid:7227)]

 Score = 386 (140.9 bits), Expect = 7.2e-47, Sum P(2) = 7.2e-47
 Identities = 58/133 (43%), Positives = 92/133 (69%)

Query:     1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
             +P+F++G N +ECDC ++WLQ+ +   +    P++ DL+ ++CR+ Y     ++ ++  A
Sbjct:   670 IPEFYIGHNAYECDCNLDWLQKVNR--ESRTQPQLMDLDQIHCRLAYARGS-SHVSLIEA 726

Query:    61 DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNH-VP 119
              S  FLC Y  HCF+LC CC++ ACDC+M CP  C+CY+DQ+WT+N+VDCS + Y   +P
Sbjct:   727 KSDDFLCKYASHCFALCHCCDFQACDCKMECPDRCSCYHDQSWTSNVVDCSRASYEQTLP 786

Query:   120 LFVPMDATTIYLD 132
               +PMD+T +YLD
Sbjct:   787 SHIPMDSTQLYLD 799

GO:0005886 "plasma membrane" evidence=ISS

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IEA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA

GO:0008063 "Toll signaling pathway" evidence=IEA

GO:0009620 "response to fungus" evidence=IEA

GO:0060049 "regulation of protein glycosylation" evidence=IMP

GO:0048935 "peripheral nervous system neuron development" evidence=IMP

GO:0002227 "innate immune response in mucosa" evidence=IMP

FB|FBgn0034476 Toll-7 "Toll-7" [Drosophila melanogaster (taxid:7227)]

 Score = 377 (137.8 bits), Expect = 3.5e-41, Sum P(2) = 3.5e-41
 Identities = 61/132 (46%), Positives = 85/132 (64%)

Query:     1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
             +P+F+LG NPFECDC M+WLQR + +     +P + D+ ++ C M +           + 
Sbjct:   708 LPEFYLGGNPFECDCTMDWLQRINNLTTRQ-HPRVMDMANIECVMPHARGAAVRPLSGLR 766

Query:    61 DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
                 FLC YE HCF+LC CC++ ACDC M+CP NCTCY+DQ W+TN+VDC   Q   +P 
Sbjct:   767 PQD-FLCRYESHCFALCHCCDFDACDCEMTCPSNCTCYHDQIWSTNVVDCGGQQTTELPR 825

Query:   121 FVPMDATTIYLD 132
              VPMD++ +YLD
Sbjct:   826 RVPMDSSVVYLD 837

GO:0005886 "plasma membrane" evidence=NAS

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS;NAS

GO:0006952 "defense response" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0002752 "cell surface pattern recognition receptor signaling pathway" evidence=IC

GO:0008329 "pattern recognition receptor activity" evidence=IC

GO:0051607 "defense response to virus" evidence=IMP

GO:0046790 "virion binding" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0010508 "positive regulation of autophagy" evidence=IMP

FB|FBgn0004364 18w "18 wheeler" [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 7.0e-37, Sum P(2) = 7.0e-37
 Identities = 55/132 (41%), Positives = 78/132 (59%)

Query:     1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
             +P+F+LG NPFECDC MEWLQR + +     +P + DL ++ C M +  +      +   
Sbjct:   671 VPEFYLGGNPFECDCSMEWLQRINNLTTRQ-HPHVVDLGNIECLMPHSRSA-PLRPLASL 728

Query:    61 DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
              +S F+C YE HC   C CCEY  C+C + CP NC+C++D  W TNIVDC       +P 
Sbjct:   729 SASDFVCKYESHCPPTCHCCEYEQCECEVICPGNCSCFHDATWATNIVDCGRQDLAALPN 788

Query:   121 FVPMDATTIYLD 132
              +P D + +YLD
Sbjct:   789 RIPQDVSDLYLD 800

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0007155 "cell adhesion" evidence=IDA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0006955 "immune response" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0019731 "antibacterial humoral response" evidence=NAS;IMP;TAS

GO:0048598 "embryonic morphogenesis" evidence=TAS

GO:0006952 "defense response" evidence=TAS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0019730 "antimicrobial humoral response" evidence=IMP

FB|FBgn0036494 Toll-6 "Toll-6" [Drosophila melanogaster (taxid:7227)]

 Score = 401 (146.2 bits), Expect = 6.9e-36, P = 6.9e-36
 Identities = 62/132 (46%), Positives = 92/132 (69%)

Query:     1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
             +P+F++G NPF CDC ++WLQ+ + I     YP I DLE++YC+++       Y  +  A
Sbjct:   738 LPEFYIGGNPFTCDCNIDWLQKINHITSRQ-YPRIMDLETIYCKLLNNRER-AYIPLIEA 795

Query:    61 DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
             +   FLC Y+ HCF++C CCE+ ACDC M+CP NCTC++DQ W+TNIV+CS + Y+ +P 
Sbjct:   796 EPKHFLCTYKTHCFAVCHCCEFDACDCEMTCPTNCTCFHDQTWSTNIVECSGAAYSEMPR 855

Query:   121 FVPMDATTIYLD 132
              VPMD + +Y+D
Sbjct:   856 RVPMDTSELYID 867

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0007165 "signal transduction" evidence=IEA;ISS

WB|WBGene00006593 tol-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 192 (72.6 bits), Expect = 5.7e-13, P = 5.7e-13
 Identities = 77/274 (28%), Positives = 118/274 (43%)

Query:     3 KFFLGENPFECDCKMEWLQRAHEIHKDGIYPE--IADLESLYCRMVYEENLITYDNIFIA 60
             K  + ENP  CDC+M W+         G  P+  I D E+  C    + + I   ++   
Sbjct:   642 KVEISENPLICDCQMGWMI-------GGAKPKVLIQDSETASCSHAVDGHQIQIQSLSKK 694

Query:    61 DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
             D    LC Y+  C   C CC+YG CDC+  CP NC C+ D  +  NIV C  +  + VP 
Sbjct:   695 D---LLCPYKSVCEPECICCQYGNCDCKSVCPANCRCFRDDQFNINIVRCHGNS-SMVPK 750

Query:   121 --FV----PMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDL 174
               FV    P+ AT I L          +S      ++++ + G   +  +++ +  H   
Sbjct:   751 REFVVSELPVSATEIILSGVTLPQLRTHSFIGRLRLQRLHINGTGLR--SIQPKAFHT-- 806

Query:   175 NPNLISTADFVTNS-IERS-EKVIMV--LSRAFIYGDWSRPEFKSALNGSLMRHRKPLFI 230
              P L  T D   NS I  S E+ +    +S+ F+ G+     F S L+  +      L  
Sbjct:   807 LPAL-KTLDLSDNSLISLSGEEFLKCGEVSQLFLNGN----RF-STLSRGIFEKLPNLKY 860

Query:   231 IMLPPHSNILVIMPMSIYHLSVLLQDNQASGNSI 264
             + L  H+N L  +P  + H S  L     S N +
Sbjct:   861 LTL--HNNSLEDIPQ-VLH-STALSKISLSSNPL 890

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

GO:0009790 "embryo development" evidence=IMP

GO:0006952 "defense response" evidence=IMP

GO:0005623 "cell" evidence=IDA

GO:0030424 "axon" evidence=ND

GO:0005057 "receptor signaling protein activity" evidence=ISS

WB|WBGene00011454 lron-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 41/152 (26%), Positives = 70/152 (46%)

Query:     3 KFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVY--EENLITYDNIFIA 60
             K FL ENP  C C  +WL    +     I   I DL+++ C  +   E+ ++    + +A
Sbjct:   313 KLFLSENPLLCHCNHKWLM---DSSAKNI--SIGDLQTIECLNILKPEKKML----LTLA 363

Query:    61 DS-SKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQ-----AWTTNIVDCSNSQ 114
              S ++ LC Y   C + C CC+   C+CR  CP  C C           + NI+ C   +
Sbjct:   364 HSRNQLLCKYSNMCEADCECCQKKECECRFECPPTCKCLRSADVSIVRTSQNIMVCDKLR 423

Query:   115 YNHVPLFVPMDATTIYLDDTPCQAYVIYSLKD 146
             ++ +  F P   T ++++ T  + +    LK+
Sbjct:   424 WDKLGKF-PSPLTQLHMNQTDWKIFETEKLKE 454

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9WV82 TLR4 "Toll-like receptor 4" [Cricetulus griseus (taxid:10029)]

 Score = 146 (56.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
 Identities = 39/132 (29%), Positives = 65/132 (49%)

Query:   138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
             A+VIYS +DE +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct:   674 AFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIQEGFHKSRKVIV 733

Query:   198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL---SVLL 254
             V+SR FI   W   E++ A     +     +  I+L      L+   + +Y L   +  L
Sbjct:   734 VVSRHFIQSRWCIFEYEIAQTWQFLSSHSGIIFIVLEKVEKSLLKQQVELYRLLSRNTYL 793

Query:   255 Q-DNQASGNSIF 265
             + ++ A G  IF
Sbjct:   794 EWEDNALGRHIF 805

GO:0001875 "lipopolysaccharide receptor activity" evidence=ISS

GO:0032497 "detection of lipopolysaccharide" evidence=ISS

GO:0046696 "lipopolysaccharide receptor complex" evidence=ISS

FB|FBgn0262473 Tl "Toll" [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 34/105 (32%), Positives = 56/105 (53%)

Query:   131 LD-DTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLIS--TADFVTN 187
             LD D    A++ YS KD+ F++  L+P L       +L VH RD    L+     + +  
Sbjct:   853 LDKDKKFDAFISYSHKDQSFIEDYLVPQLEHGPQKFQLCVHERDW---LVGGHIPENIMR 909

Query:   188 SIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIM 232
             S+  S + I+VLS+ FI  +W+R EF++A   +L   R  + +I+
Sbjct:   910 SVADSRRTIIVLSQNFIKSEWARLEFRAAHRSALNEGRSRIIVII 954

GO:0019730 "antimicrobial humoral response" evidence=IGI

GO:0019732 "antifungal humoral response" evidence=IMP

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IMP

GO:0006967 "positive regulation of antifungal peptide biosynthetic process" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;NAS

GO:0008063 "Toll signaling pathway" evidence=IEA;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006952 "defense response" evidence=NAS;TAS

GO:0009950 "dorsal/ventral axis specification" evidence=IMP;NAS;TAS

GO:0030097 "hemopoiesis" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0006955 "immune response" evidence=TAS

GO:0009620 "response to fungus" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0070976 "TIR domain binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=NAS

GO:0050832 "defense response to fungus" evidence=TAS

GO:0045087 "innate immune response" evidence=IDA;NAS;TAS

GO:0019955 "cytokine binding" evidence=TAS

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA;TAS

GO:0035007 "regulation of melanization defense response" evidence=TAS

GO:0035172 "hemocyte proliferation" evidence=IMP;TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA;NAS

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0033565 "ESCRT-0 complex" evidence=IDA

GO:0016201 "synaptic target inhibition" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

RGD|3870 Tlr4 "toll-like receptor 4" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 39/132 (29%), Positives = 66/132 (50%)

Query:   138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
             A+VIYS ++E +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct:   674 AFVIYSSQNEDWVRNELVKNLEEGVPRFQLCLHYRDFIPGVAIAANIIQEGFHKSRKVIV 733

Query:   198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL---SVLL 254
             V+SR FI   W   E++ A     +  R  +  I+L      L+   + +Y L   +  L
Sbjct:   734 VVSRHFIQSRWCIFEYEIAQTWQFLSSRSGIIFIVLEKVEKSLLRQQVELYRLLSRNTYL 793

Query:   255 Q-DNQASGNSIF 265
             + ++ A G  IF
Sbjct:   794 EWEDNALGRHIF 805

GO:0000187 "activation of MAPK activity" evidence=IEA;ISO

GO:0001530 "lipopolysaccharide binding" evidence=ISO;IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0001875 "lipopolysaccharide receptor activity" evidence=IEA;ISO;ISS

GO:0002218 "activation of innate immune response" evidence=ISO

GO:0002224 "toll-like receptor signaling pathway" evidence=IDA

GO:0002282 "microglial cell activation involved in immune response" evidence=IDA

GO:0002322 "B cell proliferation involved in immune response" evidence=ISO

GO:0002537 "nitric oxide production involved in inflammatory response" evidence=IEA;ISO

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0002758 "innate immune response-activating signal transduction" evidence=IMP

GO:0003009 "skeletal muscle contraction" evidence=IEP

GO:0004872 "receptor activity" evidence=IDA;TAS

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=IEA;ISO;TAS

GO:0006691 "leukotriene metabolic process" evidence=IDA

GO:0006954 "inflammatory response" evidence=IEP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0007252 "I-kappaB phosphorylation" evidence=IEA;ISO

GO:0009617 "response to bacterium" evidence=ISO

GO:0009636 "response to toxic substance" evidence=IEP

GO:0009897 "external side of plasma membrane" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IDA

GO:0010572 "positive regulation of platelet activation" evidence=IEA;ISO

GO:0014823 "response to activity" evidence=IEP

GO:0016064 "immunoglobulin mediated immune response" evidence=IEP

GO:0030890 "positive regulation of B cell proliferation" evidence=IEA;ISO

GO:0031663 "lipopolysaccharide-mediated signaling pathway" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=ISO;IEP;IDA

GO:0032497 "detection of lipopolysaccharide" evidence=IEA;ISO;ISS

GO:0032570 "response to progesterone stimulus" evidence=IEP

GO:0032609 "interferon-gamma production" evidence=IEA;ISO

GO:0032689 "negative regulation of interferon-gamma production" evidence=IEA;ISO

GO:0032700 "negative regulation of interleukin-17 production" evidence=IEA;ISO

GO:0032707 "negative regulation of interleukin-23 production" evidence=IEA;ISO

GO:0032715 "negative regulation of interleukin-6 production" evidence=IEA;ISO

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA;ISO

GO:0032722 "positive regulation of chemokine production" evidence=IEA;ISO

GO:0032727 "positive regulation of interferon-alpha production" evidence=IEA;ISO

GO:0032728 "positive regulation of interferon-beta production" evidence=IEA;ISO

GO:0032729 "positive regulation of interferon-gamma production" evidence=IEA;ISO

GO:0032732 "positive regulation of interleukin-1 production" evidence=IEA;ISO

GO:0032733 "positive regulation of interleukin-10 production" evidence=IEA;ISO

GO:0032735 "positive regulation of interleukin-12 production" evidence=IEA;ISO

GO:0032755 "positive regulation of interleukin-6 production" evidence=IEA;ISO

GO:0032757 "positive regulation of interleukin-8 production" evidence=IEA;ISO

GO:0032760 "positive regulation of tumor necrosis factor production" evidence=IEA;ISO

GO:0032868 "response to insulin stimulus" evidence=IEP

GO:0032874 "positive regulation of stress-activated MAPK cascade" evidence=ISO

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=IEA

GO:0042116 "macrophage activation" evidence=IEA;ISO

GO:0042346 "positive regulation of NF-kappaB import into nucleus" evidence=IEA;ISO

GO:0042535 "positive regulation of tumor necrosis factor biosynthetic process" evidence=IEA;ISO

GO:0042742 "defense response to bacterium" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA;ISO

GO:0043388 "positive regulation of DNA binding" evidence=IMP

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IPI

GO:0045084 "positive regulation of interleukin-12 biosynthetic process" evidence=IEA;ISO

GO:0045087 "innate immune response" evidence=IEA;TAS

GO:0045348 "positive regulation of MHC class II biosynthetic process" evidence=IEA;ISO

GO:0045359 "positive regulation of interferon-beta biosynthetic process" evidence=IEA;ISO

GO:0045416 "positive regulation of interleukin-8 biosynthetic process" evidence=IEA;ISO

GO:0045429 "positive regulation of nitric oxide biosynthetic process" evidence=IEA;ISO

GO:0045471 "response to ethanol" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046330 "positive regulation of JNK cascade" evidence=IEA;ISO

GO:0046696 "lipopolysaccharide receptor complex" evidence=IEA;ISO;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0050671 "positive regulation of lymphocyte proliferation" evidence=ISO

GO:0050707 "regulation of cytokine secretion" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA;ISO

GO:0050729 "positive regulation of inflammatory response" evidence=IMP

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IDA

GO:0050829 "defense response to Gram-negative bacterium" evidence=IEA;ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA;ISO;IMP

GO:0051384 "response to glucocorticoid stimulus" evidence=IEP

GO:0051770 "positive regulation of nitric-oxide synthase biosynthetic process" evidence=IEA;ISO

GO:0051930 "regulation of sensory perception of pain" evidence=IMP

GO:0052033 "pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response" evidence=IDA

GO:0060729 "intestinal epithelial structure maintenance" evidence=IEA;ISO

GO:0060907 "positive regulation of macrophage cytokine production" evidence=IEA;ISO

GO:0070373 "negative regulation of ERK1 and ERK2 cascade" evidence=IEA;ISO

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA;ISO

GO:0070430 "positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway" evidence=IEA;ISO

GO:0070434 "positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway" evidence=IEA;ISO

GO:0070542 "response to fatty acid" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=ISO

GO:0071223 "cellular response to lipoteichoic acid" evidence=IEA;ISO

GO:0071260 "cellular response to mechanical stimulus" evidence=IEA;IEP;ISO

GO:0045121 "membrane raft" evidence=IDA

UNIPROTKB|Q9QX05 Tlr4 "Toll-like receptor 4" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 39/132 (29%), Positives = 66/132 (50%)

Query:   138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
             A+VIYS ++E +V+  L+  L    P  +L +H+RD  P +   A+ +     +S KVI+
Sbjct:   674 AFVIYSSQNEDWVRNELVKNLEEGVPRFQLCLHYRDFIPGVAIAANIIQEGFHKSRKVIV 733

Query:   198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHL---SVLL 254
             V+SR FI   W   E++ A     +  R  +  I+L      L+   + +Y L   +  L
Sbjct:   734 VVSRHFIQSRWCIFEYEIAQTWQFLSSRSGIIFIVLEKVEKSLLRQQVELYRLLSRNTYL 793

Query:   255 Q-DNQASGNSIF 265
             + ++ A G  IF
Sbjct:   794 EWEDNALGRHIF 805

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=IEA

GO:0050707 "regulation of cytokine secretion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	267
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-06
pfam01582	135	pfam01582, TIR, TIR domain	0.001

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 136 CQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKV 195
              ++ YS   E    +  L  L  K     L V   D  P      + +  +IE+S   
Sbjct: 2   YDVFISYS-GKEDVRNE-FLSHLLEKLRGYGLCVFIDDFEPG-GGDLEEIDEAIEKSRIA 58

Query: 196 IMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFII 231
           I+VLS  +   +W   E  +AL  +L      +  I
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPI 94

Length = 140

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 9/121 (7%)

Query: 138 AYVIYS-LKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVI 196
            +V +S   D       LL  L  ++  +KL +  RD  P   S  + +  +IE+S + I
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKEL--EEKGIKLCIDDRDELPGE-SILENLFEAIEKSRRAI 57

Query: 197 MVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILV--IMPMSIYHLSVLL 254
           ++ S  +   +W   E    +  +L         ++LP    +    + P S       L
Sbjct: 58  VIFSSNYASSEWCLDELVEIVKCAL---EGGGKKVILPIFYKVDPSDVRPQSGKFGKAFL 114

Query: 255 Q 255
           +
Sbjct: 115 K 115

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.91
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.84
PLN03194	187	putative disease resistance protein; Provisional	99.76
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.65
KOG4237|consensus	498		99.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.09
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	99.03
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.76
KOG3678|consensus	832		98.66
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.4
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.34
KOG4237|consensus	498		97.85
KOG4194|consensus	873		97.8
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	97.57
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	97.24
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.14
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	94.11
COG4271	233	Predicted nucleotide-binding protein containing TI	88.45
KOG4194|consensus	873		84.81
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	80.08

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.91  E-value=9.1e-25  Score=176.70  Aligned_cols=115  Identities=30%  Similarity=0.387  Sum_probs=99.5

Q ss_pred             ceeecCC-CCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHHHH
Q psy11469        138 AYVIYSL-KDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSA  216 (267)
Q Consensus       138 aFIsy~~-~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~~a  216 (267)
                      |||||++ +|++|+.++|.+.||++++|+++|+++||+.||. .+.++|.++|++||++|+|+|++|++|+||.+|++.|
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~-~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a   79 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGE-SILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA   79 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSS-CHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccc-cccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence            7999999 8999999999999999767999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhh
Q psy11469        217 LNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQD  256 (267)
Q Consensus       217 ~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~  256 (267)
                      ++++.++++.++|+|+++++++..  ++ ....++.+++.
T Consensus        80 ~~~~~~~~~~~~Il~v~~~v~~~~--~~-~~~~~~~~~~~  116 (141)
T PF01582_consen   80 LERLLEEGRDKLILPVFYDVSPSD--VR-PDQSLRFLLRF  116 (141)
T ss_dssp             HHHHHCSTCTTEEEEESSSS-CHH--CH-THHHHHHHHHC
T ss_pred             hhhccccccccceeeEeccCChhh--cC-hhhhHHHHHHh
Confidence            999999877788888888999887  32 13445554444

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.84  E-value=7.2e-21  Score=152.69  Aligned_cols=113  Identities=21%  Similarity=0.267  Sum_probs=88.9

Q ss_pred             CCceeecCCC---CHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469        136 CQAYVIYSLK---DEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE  212 (267)
Q Consensus       136 ~DaFIsy~~~---D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e  212 (267)
                      |||||||+++   +++||. +|...|+.  .|+.++  .+|+.+|. ...++|.++|++|+++|+|+||+|++|.||..|
T Consensus         2 ~dvFISys~~~~~~~~~v~-~L~~~l~~--~~~~v~--~d~~~~~~-~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E   75 (140)
T smart00255        2 YDVFISYSGKEDVRNEFLS-HLLEKLRG--YGLCVF--IDDFEPGG-GDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDE   75 (140)
T ss_pred             CeEEEECCCCHHHHHHHHH-HHHHHhhc--CCcEEE--ecCccccc-chHHHHHHHHHHCcEEEEEECcccccChhHHHH
Confidence            8999999995   344554 45554444  245554  45777887 666799999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhc
Q psy11469        213 FKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDN  257 (267)
Q Consensus       213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~  257 (267)
                      ++.|+++..+++.++||||++++++...   +.....|+.++..|
T Consensus        76 ~~~a~~~~~~~~~~~iIPI~~~~~~~~~---~~~~~~l~~~~~~~  117 (140)
T smart00255       76 LVAALENALEEGGLRVIPIFYEVIPSDV---RKQPGKFRKVLKKN  117 (140)
T ss_pred             HHHHHHHHHHcCCCeEEEEEEecChHHH---HhcccHHHHHHHHH
Confidence            9999999887778899999999997432   23456677777766

>PLN03194 putative disease resistance protein; Provisional

Probab=99.76  E-value=3e-18  Score=142.78  Aligned_cols=98  Identities=13%  Similarity=0.221  Sum_probs=88.7

Q ss_pred             cCCCCCceeecCCCCH--HHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCc
Q psy11469        132 DDTPCQAYVIYSLKDE--PFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWS  209 (267)
Q Consensus       132 ~~n~~DaFIsy~~~D~--~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~  209 (267)
                      ..+.|||||||.++|.  .||. +|...|++  .|+++|+++.++.+|+ .+.+.|..||++|+..|+|+|++|..|.||
T Consensus        23 ~~~~yDVFISFrG~DtR~~Fvs-hL~~aL~~--~GI~vF~D~~el~~G~-~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         23 SAKPCDVFINHRGIDTKRTIAT-LLYDHLSR--LNLRPFLDNKNMKPGD-KLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             CCCCCcEEEeCCCccccccHHH-HHHHHHHH--CCCEEEEcCccccCCC-cHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            4567999999999995  7997 89999999  5999999999999999 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCcEEEEEcCCCCCc
Q psy11469        210 RPEFKSALNGSLMRHRKPLFIIMLPPHSNI  239 (267)
Q Consensus       210 ~~e~~~a~~~~~~~~~~~lI~v~~~~i~~~  239 (267)
                      ..|+..++..     +++|||||++ +++.
T Consensus        99 LdEL~~I~e~-----~~~ViPIFY~-VdPs  122 (187)
T PLN03194         99 LHELALIMES-----KKRVIPIFCD-VKPS  122 (187)
T ss_pred             HHHHHHHHHc-----CCEEEEEEec-CCHH
Confidence            9999999863     4579999997 4443

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.65  E-value=3.3e-18  Score=130.39  Aligned_cols=89  Identities=27%  Similarity=0.486  Sum_probs=77.2

Q ss_pred             ceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHHHHH
Q psy11469        138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSAL  217 (267)
Q Consensus       138 aFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~~a~  217 (267)
                      +||||+++|++||. +|...|++  .|+++|++. |+.+|. .+.+.|.++|++|+.+|+++|++|++|+||+.|+..|.
T Consensus         1 VFIS~~~~D~~~a~-~l~~~L~~--~g~~v~~d~-~~~~g~-~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~   75 (102)
T PF13676_consen    1 VFISYSSEDREFAE-RLAERLES--AGIRVFLDR-DIPPGE-DWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW   75 (102)
T ss_dssp             EEEEEEGGGCCCHH-HHHHHHHH--TT--EE-GG-EE-TTS--HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH
T ss_pred             eEEEecCCcHHHHH-HHHHHHhh--cCCEEEEEE-eCCCCC-CHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH
Confidence            69999999999997 79999998  499999996 999999 99999999999999999999999999999999999994


Q ss_pred             HHHhhcCCCcEEEEEcCCC
Q psy11469        218 NGSLMRHRKPLFIIMLPPH  236 (267)
Q Consensus       218 ~~~~~~~~~~lI~v~~~~i  236 (267)
                      .     .+++||||++++.
T Consensus        76 ~-----~~~~iipv~~~~~   89 (102)
T PF13676_consen   76 K-----RGKPIIPVRLDPC   89 (102)
T ss_dssp             C-----TSESEEEEECSGG
T ss_pred             H-----CCCEEEEEEECCc
Confidence            3     4458999998875

>KOG4237|consensus

Probab=99.64  E-value=1.1e-16  Score=145.93  Aligned_cols=108  Identities=28%  Similarity=0.545  Sum_probs=91.9

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCCCcceecccc
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYEEHCFSLCRC   79 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~~~~~~~~~~   79 (267)
                      |++|+|-+|||.|||+++||.+|++.    +.    ..++..|++|.. ++.    ++.++...++.|...+..      
T Consensus       348 l~~l~l~~Np~~CnC~l~wl~~Wlr~----~~----~~~~~~Cq~p~~~~~~----~~~dv~~~~~~c~~~ee~------  409 (498)
T KOG4237|consen  348 LSTLNLLSNPFNCNCRLAWLGEWLRK----KS----VVGNPRCQSPGFVRQI----PISDVAFGDFRCGGPEEL------  409 (498)
T ss_pred             eeeeehccCcccCccchHHHHHHHhh----CC----CCCCCCCCCCchhccc----cchhccccccccCCcccc------
Confidence            57899999999999999999999973    11    138899999999 666    999999999999955432      


Q ss_pred             ccCCccccCCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         80 CEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        80 ~~~~~~~~~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                          .|.....||..|+|.      ...|.|++++++.+|++||.+++++|++||.+
T Consensus       410 ----~~~~s~~cP~~c~c~------~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~  456 (498)
T KOG4237|consen  410 ----GCLTSSPCPPPCTCL------DTVVRCSNKLLKLLPRGIPVDVTELYLDGNAI  456 (498)
T ss_pred             ----CCCCCCCCCCCcchh------hhhHhhcccchhhcCCCCCchhHHHhcccchh
Confidence                233356799999998      57899999999999999999999999999986

>PLN03210 Resistant to P

Probab=99.09  E-value=2e-10  Score=121.02  Aligned_cols=97  Identities=12%  Similarity=0.174  Sum_probs=86.6

Q ss_pred             CCCceeecCCCC--HHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469        135 PCQAYVIYSLKD--EPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE  212 (267)
Q Consensus       135 ~~DaFIsy~~~D--~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e  212 (267)
                      .||||+||.++|  ..|+. +|...|.+  .|+.++.++ ++..|+ .+..++.+||++||-.|+|+|++|..|.||..|
T Consensus        12 ~~~vf~sfrg~d~r~~f~~-hl~~~l~~--~~i~~f~d~-~~~~g~-~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~e   86 (1153)
T PLN03210         12 VYDVFPSFSGEDVRITFLS-HFLKELDR--KLIIAFKDN-EIERSQ-SLDPELKQAIRDSRIAVVVFSKNYASSSWCLNE   86 (1153)
T ss_pred             CCcEEeeCCCcccccCHHH-HHHHHHHH--CCCeEEccC-CccCCC-cccHHHHHHHHhCeEEEEEecCCcccchHHHHH
Confidence            599999999998  57997 89999998  599999865 799999 999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcEEEEEcCCCCC
Q psy11469        213 FKSALNGSLMRHRKPLFIIMLPPHSN  238 (267)
Q Consensus       213 ~~~a~~~~~~~~~~~lI~v~~~~i~~  238 (267)
                      +...+... ++.+..||||||+ +.+
T Consensus        87 l~~i~~~~-~~~~~~v~pvfy~-v~p  110 (1153)
T PLN03210         87 LLEIVRCK-EELGQLVIPVFYG-LDP  110 (1153)
T ss_pred             HHHHHHhh-hhcCceEEEEEec-ccH
Confidence            99998765 4566789999997 443

syringae 6; Provisional

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=99.03  E-value=1.1e-10  Score=77.62  Aligned_cols=50  Identities=32%  Similarity=0.583  Sum_probs=40.4

Q ss_pred             CCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceecc
Q psy11469          9 NPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCD   68 (267)
Q Consensus         9 NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~   68 (267)
                      |||.|||++.||++|+..     +..+.+.+.++|.+|.. + .    ++.++..+++.|.
T Consensus         1 NP~~CdC~l~~~~~w~~~-----~~~~~~~~~~~C~~P~~~~-~----~l~~~~~~~~~C~   51 (51)
T smart00082        1 NPFICDCELRWLLRWLQA-----NEHLQDPVSLRCASPSSLR-G----PLLELLHSEFKCP   51 (51)
T ss_pred             CCccCcCCchHHHHHHHh-----CCccCCCCCCEeCCcHHHH-h----HHHcCCHhhCCCc
Confidence            999999999999999962     22244567999999999 5 3    7888888778774

>TIGR00864 PCC polycystin cation channel protein

Probab=98.76  E-value=5.2e-09  Score=114.09  Aligned_cols=62  Identities=26%  Similarity=0.333  Sum_probs=51.9

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE   70 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~   70 (267)
                      |++|+|++|||+|||+|+||++|++.    ...++.....++|.+|.. +|+    +|.+++..++.|...
T Consensus        21 L~~LdLsgNPw~CDC~L~WL~~WL~~----~~v~v~~~~~i~CasP~~LrG~----~L~~l~~~d~~C~~~   83 (2740)
T TIGR00864        21 LSEIDLSGNPFECDCGLARLPRWAEE----KGVKVRQPEAALCAGPGALAGQ----PLLGIPLLDSGCDEE   83 (2740)
T ss_pred             ceEEEeeCCccccccccHHHHHHHHh----cCccccCCcccCCCCChHHCCC----CcccCCcccCCCCCc
Confidence            67999999999999999999999973    233344567899999999 777    999999888888743

Note: this model has been restricted to the amino half because for technical reasons.

>KOG3678|consensus

Probab=98.66  E-value=7.1e-08  Score=90.36  Aligned_cols=99  Identities=14%  Similarity=0.233  Sum_probs=78.6

Q ss_pred             ceecccCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCccc-
Q psy11469        127 TTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIY-  205 (267)
Q Consensus       127 ~~L~L~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~-  205 (267)
                      ++....+..+|+||||...--.=...-+...|+-  .||+|+++..-+..|.  +-+.+...|..++.+|+||||+.|. 
T Consensus       604 v~~a~~skq~DVFISYRRstGnQLASLiKV~LQL--~GyrVFIDVdKL~AGK--FdssLlkni~aAkhFiLVLtP~sLDr  679 (832)
T KOG3678|consen  604 VEVAMLSKQIDVFISYRRSTGNQLASLIKVLLQL--RGYRVFIDVDKLYAGK--FDSSLLKNIQAAKHFILVLTPNSLDR  679 (832)
T ss_pred             cccccccCCcceEEEeeccccHHHHHHHHHHHHh--cCceEEEehhhhhccc--ccHHHHHHHHhhheeEEEeCcchHHH
Confidence            4555677789999999986543233234444544  5999999999999997  6677888999999999999999994 


Q ss_pred             -------ccCcHHHHHHHHHHHhhcCCCcEEEEEcC
Q psy11469        206 -------GDWSRPEFKSALNGSLMRHRKPLFIIMLP  234 (267)
Q Consensus       206 -------s~w~~~e~~~a~~~~~~~~~~~lI~v~~~  234 (267)
                             ..|...|+..|++.     .+.|||||-.
T Consensus       680 ~lnD~nCeDWVHKEl~~Afe~-----~KNIiPI~D~  710 (832)
T KOG3678|consen  680 LLNDDNCEDWVHKELKCAFEH-----QKNIIPIFDT  710 (832)
T ss_pred             HhccccHHHHHHHHHHHHHHh-----cCCeeeeecc
Confidence                   36999999999874     5789999966

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.40  E-value=1.2e-06  Score=71.14  Aligned_cols=64  Identities=20%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             ceeecCCCCH---HHHHHhhhhccCCCCCceEEEEecCCCC--CCcccHHHHHHHHHHhcCEEEEEecCCcc
Q psy11469        138 AYVIYSLKDE---PFVKQILLPGLAFKDPAVKLRVHHRDLN--PNLISTADFVTNSIERSEKVIMVLSRAFI  204 (267)
Q Consensus       138 aFIsy~~~D~---~~v~~~L~~~Le~~~~g~~v~~~~rD~~--~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl  204 (267)
                      ||||||++++   +||. .|+..|++. .|+.+.++.+|..  ++. .....+.+.+++++++|+|.||.+.
T Consensus         3 VfI~Ys~d~~~h~~~V~-~la~~L~~~-~g~~V~lD~~~~~~i~~~-g~~~W~~~~~~~ad~Vliv~S~~~~   71 (150)
T PF08357_consen    3 VFISYSHDSEEHKEWVL-ALAEFLRQN-CGIDVILDQWELNEIARQ-GPPRWMERQIREADKVLIVCSPGYK   71 (150)
T ss_pred             EEEEeCCCCHHHHHHHH-HHHHHHHhc-cCCceeecHHhhcccccC-CHHHHHHHHHhcCCEEEEEeccchh
Confidence            7999999664   5798 699999885 5999999999994  477 8999999999999999999996654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.34  E-value=5e-07  Score=71.96  Aligned_cols=98  Identities=18%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             CCceeecCCCCHHHHHHhhhhccCCC-----CCceEE----------EEecCCCCCCcccHHHHHHHHHHhcCEEEEEec
Q psy11469        136 CQAYVIYSLKDEPFVKQILLPGLAFK-----DPAVKL----------RVHHRDLNPNLISTADFVTNSIERSEKVIMVLS  200 (267)
Q Consensus       136 ~DaFIsy~~~D~~~v~~~L~~~Le~~-----~~g~~v----------~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS  200 (267)
                      +.+||||+++|..+..+.|...+.+.     ...+..          .-...|..... .+-..|.+.|..|..+||++|
T Consensus         1 ~~vFIS~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSE-YIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTT-THHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHH-HHHHHHHHHHhcCCEEEEEeC
Confidence            37999999999984334677666552     011211          01122222344 788999999999999999999


Q ss_pred             CCcccccCcHHHHHHHHHHHhhcCCCcEEEEEcCCCCCc
Q psy11469        201 RAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNI  239 (267)
Q Consensus       201 ~~fl~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~~i~~~  239 (267)
                      ++--.|.|...|++.|+.     ..++||.|.+......
T Consensus        80 ~~T~~s~wV~~EI~~A~~-----~~~~Ii~V~~~~~~~~  113 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK-----KGKPIIGVYLPGLKDR  113 (130)
T ss_dssp             TT----HHHHHHHHHHTT-----T---EEEEETT--SGG
T ss_pred             CCcccCcHHHHHHHHHHH-----CCCCEEEEECCCCCCC
Confidence            999999999999999976     5678999998876544

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>KOG4237|consensus

Probab=97.85  E-value=1.2e-05  Score=74.40  Aligned_cols=72  Identities=28%  Similarity=0.584  Sum_probs=54.5

Q ss_pred             ccccccCCceeccCCCcceeccccccCCcccc-CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCC
Q psy11469         56 NIFIADSSKFLCDYEEHCFSLCRCCEYGACDC-RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDT  134 (267)
Q Consensus        56 ~l~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~-~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n  134 (267)
                      .+..+..+.+.|.........      ..|.- ...||..|+|-...   ...|+|+.+||++||..+|.++++++||.|
T Consensus         7 ~v~~l~~s~~~csg~~s~~~~------~~C~~~~~~CP~pC~Cs~~~---g~~VdCr~~GL~eVP~~LP~~tveirLdqN   77 (498)
T KOG4237|consen    7 NVADLQKSEFVCSGLQSAWAV------PTCAHSASACPAPCTCSDVE---GGIVDCRGKGLTEVPANLPPETVEIRLDQN   77 (498)
T ss_pred             cccccccceeeecCchhhhhh------hhhhhccccCCCCcccCCCC---CceEEccCCCcccCcccCCCcceEEEeccC
Confidence            677777777888876543111      11111 34799999998433   479999999999999999999999999999


Q ss_pred             CC
Q psy11469        135 PC  136 (267)
Q Consensus       135 ~~  136 (267)
                      .+
T Consensus        78 ~I   79 (498)
T KOG4237|consen   78 QI   79 (498)
T ss_pred             Cc
Confidence            65

>KOG4194|consensus

Probab=97.80  E-value=7.2e-06  Score=79.27  Aligned_cols=60  Identities=18%  Similarity=0.423  Sum_probs=46.2

Q ss_pred             CeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcccccccccccccccCCceeccCC
Q psy11469          2 PKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLCDYE   70 (267)
Q Consensus         2 ~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~~g~l~~~~l~~~~~~~~~C~~~   70 (267)
                      ++|-+..-.|.|||+++||.+|+..    ..++  ..-.++|+.|++   |++..+.++++.++.|...
T Consensus       442 k~Lv~nSssflCDCql~Wl~qWl~~----~~lq--~sv~a~CayPe~---Lad~~i~svd~~~lvC~Ds  501 (873)
T KOG4194|consen  442 KELVMNSSSFLCDCQLKWLAQWLYR----RKLQ--SSVIAKCAYPEP---LADQSIVSVDTANLVCDDS  501 (873)
T ss_pred             hhhhhcccceEEeccHHHHHHHHHh----cccc--cceeeeccCCcc---cccceeEeechhhceecCC
Confidence            4445555568899999999999973    2222  346789999999   5555999999999999843

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=97.57  E-value=7e-05  Score=45.21  Aligned_cols=32  Identities=44%  Similarity=0.879  Sum_probs=28.3

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcc
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDAT  127 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~  127 (267)
                      .||..|+|+      ...|+|++++|+++|.+||.+++
T Consensus         1 ~CP~~C~C~------~~~V~C~~~~L~~vP~~iP~~t~   32 (33)
T smart00013        1 ACPAPCNCS------GTAVDCSGRGLTEVPLDLPPDTT   32 (33)
T ss_pred             CcCCCCEEC------CCEeEeCCCCcCccCCCCCcccc
Confidence            389999998      46899999999999999998864

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.24  E-value=0.00023  Score=41.31  Aligned_cols=28  Identities=43%  Similarity=0.827  Sum_probs=22.2

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVP  123 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p  123 (267)
                      .||..|+|.      ...|+|+++||+++|..+|
T Consensus         1 ~CP~~C~C~------~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCS------GLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEE------TTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEec------CCEeECCCCCCCccCCCCc
Confidence            388999998      5789999999999999876

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.14  E-value=0.0036  Score=49.62  Aligned_cols=90  Identities=11%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             ceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccc---c-------
Q psy11469        138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYG---D-------  207 (267)
Q Consensus       138 aFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s---~-------  207 (267)
                      +||.|+ +|..++. .+...|+.  .|+...+.......|. .+.|.+.+.++++.-.|+|+||+=+..   .       
T Consensus         2 VFIvhg-~~~~~~~-~v~~~L~~--~~~ep~i~~~~~~~g~-tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~   76 (125)
T PF10137_consen    2 VFIVHG-RDLAAAE-AVERFLEK--LGLEPIIWHEQPNLGQ-TIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPR   76 (125)
T ss_pred             EEEEeC-CCHHHHH-HHHHHHHh--CCCceEEeecCCCCCC-chHHHHHHHhccCCEEEEEEcccccccccCCccccccc
Confidence            799999 8888886 68888886  4787767777779999 999999999999999999999964421   1       


Q ss_pred             ---CcHHHHHHHHHHHhhcCCCcEEEEEcCC
Q psy11469        208 ---WSRPEFKSALNGSLMRHRKPLFIIMLPP  235 (267)
Q Consensus       208 ---w~~~e~~~a~~~~~~~~~~~lI~v~~~~  235 (267)
                         -..+|+-+++.++   ++++++.+.-++
T Consensus        77 aR~NVifE~G~f~g~L---Gr~rv~~l~~~~  104 (125)
T PF10137_consen   77 ARQNVIFELGLFIGKL---GRERVFILVKGG  104 (125)
T ss_pred             cccceeehhhHHHhhc---CcceEEEEEcCC
Confidence               1346666666543   456777777554

Their exact function has not, as yet, been defined.

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.11  E-value=0.026  Score=31.64  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=17.5

Q ss_pred             CceecCCcccccccccccccccCCceecc
Q psy11469         40 SLYCRMVYEENLITYDNIFIADSSKFLCD   68 (267)
Q Consensus        40 ~~~C~~P~~~g~l~~~~l~~~~~~~~~C~   68 (267)
                      +++|++|.+   |.+ +|.++.+++|.|.
T Consensus         1 ~~~Ca~P~~---lrg-~l~~~~~~~f~C~   25 (25)
T PF01463_consen    1 NARCASPPE---LRG-PLLDLPPSDFKCS   25 (25)
T ss_dssp             T-BEEESGG---GTT-BGGGSSGGG----
T ss_pred             CCccCCChH---HcC-cHhhCCcccCcCC
Confidence            468999999   677 8999998889884

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=88.45  E-value=2.5  Score=36.02  Aligned_cols=89  Identities=11%  Similarity=0.078  Sum_probs=61.3

Q ss_pred             CceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcc-----ccc---C
Q psy11469        137 QAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFI-----YGD---W  208 (267)
Q Consensus       137 DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl-----~s~---w  208 (267)
                      -|||.|+++-  -+. .....|+.+ +..-..+.+-=+..|. .+.|.+...|++++.-|++++|+=.     .|+   |
T Consensus        84 kvFvv~ghd~--iAr-ael~allrd-~~l~~vi~d~~~~~g~-~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~  158 (233)
T COG4271          84 KVFVVSGHDA--IAR-AELEALLRD-WKLEPVILDGLFSEGQ-TILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAF  158 (233)
T ss_pred             eEEEEeccHH--HHH-HHHHHHhhc-cccceEEecCcccccH-HHHHHHHHHhhhceEEEEEecCcccccccccchhhcc
Confidence            8999988765  233 455566654 3444445555567788 9999999999999999999999754     221   3


Q ss_pred             ------cHHHHHHHHHHHhhcCCCcEEEEEc
Q psy11469        209 ------SRPEFKSALNGSLMRHRKPLFIIML  233 (267)
Q Consensus       209 ------~~~e~~~a~~~~~~~~~~~lI~v~~  233 (267)
                            ..+|+-+.+-++   ++++++++.-
T Consensus       159 praRqNVifELGm~mgrL---gRkrv~Il~k  186 (233)
T COG4271         159 PRARQNVIFELGMFMGRL---GRKRVMILMK  186 (233)
T ss_pred             ccccccchhhHhhHHhhc---ccceEEEEec
Confidence                  346666666554   5567766654

>KOG4194|consensus

Probab=84.81  E-value=0.96  Score=44.82  Aligned_cols=42  Identities=29%  Similarity=0.711  Sum_probs=37.1

Q ss_pred             CCCCccceeeecCCCceeEEEcCccccccc-----CCCCCCCcceecccCCCC
Q psy11469         89 MSCPFNCTCYNDQAWTTNIVDCSNSQYNHV-----PLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        89 ~~cp~~c~c~~~~~w~~~~v~C~~~gl~~i-----p~~~p~~~~~L~L~~n~~  136 (267)
                      ..||..|.|.      ...++|+++++..+     +..+|..+..|++++|..
T Consensus        44 ~~cpa~c~c~------~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl   90 (873)
T KOG4194|consen   44 SECPATCPCN------TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL   90 (873)
T ss_pred             ccCCCcCCCC------ceeeecCccccccccccccCCcCccceeeeecccccc
Confidence            4699999998      68899999999987     788999999999999975

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=80.08  E-value=6.2  Score=30.04  Aligned_cols=84  Identities=17%  Similarity=0.067  Sum_probs=56.0

Q ss_pred             cCCCCHHHHHHhhhhccCCCCCceEEEEecC-CCC-------CCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHH
Q psy11469        142 YSLKDEPFVKQILLPGLAFKDPAVKLRVHHR-DLN-------PNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEF  213 (267)
Q Consensus       142 y~~~D~~~v~~~L~~~Le~~~~g~~v~~~~r-D~~-------~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~  213 (267)
                      |+.....|+. ++...|++  .|+.++.... +..       ... .+.+.=.++|++|+-+|+++...- .+.=..+|+
T Consensus         8 F~~~~~~~~~-~~~~~L~~--~g~~v~~P~~~~~~~~~~~~~~~~-~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~El   82 (113)
T PF05014_consen    8 FSEEQKARVE-RLREALEK--NGFEVYSPQDNDENDEEDSQEWAR-EIFERDLEGIRECDIVIANLDGFR-PDSGTAFEL   82 (113)
T ss_dssp             SSHHHHHHHH-HHHHHHHT--TTTEEEGGCTCSSS--TTSHHCHH-HHHHHHHHHHHHSSEEEEEECSSS---HHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHh--CCCEEEeccccccccccccchHHH-HHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHH
Confidence            3455667776 79999999  4888876652 221       112 556666779999999999999855 344467788


Q ss_pred             HHHHHHHhhcCCCcEEEEEcCC
Q psy11469        214 KSALNGSLMRHRKPLFIIMLPP  235 (267)
Q Consensus       214 ~~a~~~~~~~~~~~lI~v~~~~  235 (267)
                      -.|..     .+++||.+..+.
T Consensus        83 G~A~a-----lgkpv~~~~~d~   99 (113)
T PF05014_consen   83 GYAYA-----LGKPVILLTEDD   99 (113)
T ss_dssp             HHHHH-----TTSEEEEEECCC
T ss_pred             HHHHH-----CCCEEEEEEcCC
Confidence            88765     345666655543

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
1o77_A	146	Crystal Structure Of The C713s Mutant Of The Tir Do		6e-06
1fyw_A	149	Crystal Structure Of The Tir Domain Of Human Tlr2 L		3e-05
1fyx_A	149	Crystal Structure Of P681h Mutant Of Tir Domain Of		1e-04
2j67_A	178	The Tir Domain Of Human Toll-Like Receptor 10 (Tlr1		1e-04

>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain Of Human Tlr2 Length = 146

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+V YS +D  +V+ +++  L   +P  KL +H RD  P      D + +SIE+S K + 
Sbjct: 5   AFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKW-IIDNIIDSIEKSHKTVF 63
Query: 198 VLSRAFIYGDWSRPE 212
           VLS  F+  +WS+ E
Sbjct: 64  VLSENFVKSEWSKYE 78

>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2 Length = 149

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+V YS +D  +V+ + +  L   +P  KL +H RD  P      D + +SIE+S K + 
Sbjct: 8   AFVSYSERDAYWVENLXVQELENFNPPFKLXLHKRDFIPGKW-IIDNIIDSIEKSHKTVF 66
Query: 198 VLSRAFIYGDWSRPE 212
           VLS  F+  +W + E
Sbjct: 67  VLSENFVKSEWXKYE 81

>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human Tlr2 Length = 149

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRD-LNPNLISTADFVTNSIERSEKVI 196
           A+V YS +D  +V+ +++  L   +P  KL +H RD ++   I   D + +SIE+S K +
Sbjct: 8   AFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWI--IDNIIDSIEKSHKTV 65
Query: 197 MVLSRAFIYGDWSRPE 212
            VLS  F+  +W + E
Sbjct: 66  FVLSENFVKSEWXKYE 81

>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10) Length = 178

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 121 FVPMDATTIYLD-DTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLI 179
           F  M  T   L  +    A++ YS  D  +VK  L+P L  +D ++ + ++    +P   
Sbjct: 20  FQSMKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGK- 78
Query: 180 STADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPP 235
           S ++ + + IE+S K I VLS  F+  +W   EF  A +     +   + +I+L P
Sbjct: 79  SISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEP 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	1e-19
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	3e-18
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-17
2js7_A	160	Myeloid differentiation primary response protein M	6e-16
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-04

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.2 bits (224), Expect = 1e-20
 Identities = 42/238 (17%), Positives = 75/238 (31%), Gaps = 17/238 (7%)

Query: 1   MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIA 60
           +    +  N F C+C++             I    AD+  +Y       +L +       
Sbjct: 549 LSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC- 607

Query: 61  DSSKFLCDYEEHCFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPL 120
           D  + L   +   F +C           +      T +    +            +H   
Sbjct: 608 DEEEVLKSLKFSLFIVCTV----TLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQG 663

Query: 121 FVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGL---AFKDPAVKLRVHHRDLNPN 177
             P      Y  D    AY+ +S KD  +V+  LL  L           L    RD  P 
Sbjct: 664 TEPDM----YKYD----AYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPG 715

Query: 178 LISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPP 235
             +    + ++I  S K++ ++SR F+   W    F  A    L      L ++++  
Sbjct: 716 -ENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGS 772

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 81.8 bits (202), Expect = 1e-19
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+V YS +D  +V+ +++  L   +P  KL +H RD         D + +SIE+S K + 
Sbjct: 8   AFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHG-KWIIDNIIDSIEKSHKTVF 66

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQ 255
           VLS  F+  +W + E   +       +     +I+L P       +P     L  ++ 
Sbjct: 67  VLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKA--IPQRFXKLRKIMN 122

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 78.8 bits (194), Expect = 3e-18
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 132 DDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIER 191
            +    A++ YS  D  +VK  L+P L  +D ++ + ++    +P   S ++ + + IE+
Sbjct: 32  RNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPG-KSISENIVSFIEK 90

Query: 192 SEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLS 251
           S K I VLS  F+  +W   EF  A +     +   + +I+L P       +P   + L 
Sbjct: 91  SYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYC--IPTRYHKLK 148

Query: 252 VLLQDN 257
            LL+  
Sbjct: 149 ALLEKK 154

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 13/102 (12%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
             V +S +D    +  L+  L     +++  +  RD  P   +    +  ++  S   ++
Sbjct: 13  VCVCHSEEDLVAAQD-LVSYLEGSTASLRCFLQLRDATPG-GAIVSELCQALSSSHCRVL 70

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNI 239
           +++  F+   W + +   AL  +       + ++     +  
Sbjct: 71  LITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 72.5 bits (178), Expect = 6e-16
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIER-SEKVI 196
           A++ Y   D  FV++++   L   +  +KL V  RD+ P         +  IE+   +++
Sbjct: 19  AFICYCPSDIQFVQEMI-RQLEQTNYRLKLCVSDRDVLPG-TCVWSIASELIEKRCRRMV 76

Query: 197 MVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPP 235
           +V+S  ++       + K AL+ S   H+K L  I    
Sbjct: 77  VVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKA 115

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 56.6 bits (136), Expect = 3e-10
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 14/110 (12%)

Query: 138 AYVIYSLKD-----------EPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVT 186
           AY+ Y+  D           E F  +IL   L  K    KL +  RDL P   +  + V 
Sbjct: 5   AYLSYTKVDPDQWNQETGEEERFALEILPDMLE-KHYGYKLFIPDRDLIPT-GTYIEDVA 62

Query: 187 NSIERSEKVIMVLSRAFIY-GDWSRPEFKSALNGSLMRHRKPLFIIMLPP 235
             +++S+++I+V++  ++    WS  E ++ L   L+     + +I    
Sbjct: 63  RCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSE 112

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 73  CFSLCRCCEYGACDCRMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLD 132
            + LC      A     +CP  C+C N      + V C+    + VP  +P +   + L 
Sbjct: 28  VWILCAAIAAAASAGPQNCPSVCSCSNQ----FSKVVCTRRGLSEVPQGIPSNTRYLNLM 83

Query: 133 D 133
           +
Sbjct: 84  E 84

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 51/262 (19%)

Query: 19  WLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSKFLC------DYEEH 72
           W     +     I   +  LE    R +++   +   +  I   +  L          + 
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDV 404

Query: 73  CFSLCRCCEYGACDCR----------MSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFV 122
              + +  +Y   + +          +         N+ A   +IVD     YN    F 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD----HYNIPKTFD 460

Query: 123 PMDATTIYLDDTPCQAYVIYSLKD-EPFVKQILLPGLAFKD---PAVKLRVHHRDLNPNL 178
             D    YLD      ++ + LK+ E   +  L   + F D      K+R  H     N 
Sbjct: 461 SDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKIR--HDSTAWNA 516

Query: 179 ISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSN 238
             +   + N++++ +       + +I  +   P+++  +N +++      F   LP    
Sbjct: 517 SGS---ILNTLQQLKFY-----KPYICDN--DPKYERLVN-AILD-----F---LPKIEE 557

Query: 239 ILVIMP-MSIYHLSVLLQDNQA 259
            L+      +  ++ L+ +++A
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEA 578

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 90  SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
            CP  CTC N      NIVDC       +P  +P   T I L+ 
Sbjct: 4   HCPAACTCSN------NIVDCRGKGLTEIPTNLPETITEIRLEQ 41

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 90  SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
            CP  C C          V C   ++  VP  +P +   + L  
Sbjct: 2   GCPPRCECS----AQDRAVLCHRKRFVAVPEGIPTETRLLDLGK 41

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 91  CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
           CP  C CYN+   T     C       VP+ +P  +  I+L  
Sbjct: 2   CPGACVCYNEPKVT---TSCPQQGLQAVPVGIPAASQRIFLHG 41

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 14/69 (20%)

Query: 90  SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPF 149
            CPF C C+        +V CS+     VP  +P D   + L +       I  +KD  F
Sbjct: 24  VCPFRCQCHL------RVVQCSDLGLEKVPKDLPPDTALLDLQNNK-----ITEIKDGDF 72

Query: 150 VKQILLPGL 158
                L  L
Sbjct: 73  KN---LKNL 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.97
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.97
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.95
2js7_A	160	Myeloid differentiation primary response protein M	99.94
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.93
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.81
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.81
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.18
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.45
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.58
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.35
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.31
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.29
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	97.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.72
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.7
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.28
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	95.1
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	94.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	94.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	94.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	94.47
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	94.46
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	93.85
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	93.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	92.48
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	92.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	92.03
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	91.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	90.98
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	90.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	90.64
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	90.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	86.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	86.5
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	85.62
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	84.37
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	84.28
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	84.28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	83.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	82.43

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-38  Score=318.11  Aligned_cols=233  Identities=21%  Similarity=0.280  Sum_probs=162.3

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCccccc-CCCceecCCcc-cccccccccccccCCceeccCCCcc----e
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIAD-LESLYCRMVYE-ENLITYDNIFIADSSKFLCDYEEHC----F   74 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~-~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~~~~----~   74 (267)
                      |++|+|++|||.|+|++.||.+|+..    .+..+.+ ...+.|.+|.. +|.    ++.+++.  -.|......    +
T Consensus       549 L~~l~l~~Np~~C~c~~~~f~~~~~~----~~~~~~~~~~~~~C~~p~~~~g~----~l~~~~~--~~C~~~~~~~~~~~  618 (844)
T 3j0a_A          549 LSVLDITHNKFICECELSTFINWLNH----TNVTIAGPPADIYCVYPDSFSGV----SLFSLST--EGCDEEEVLKSLKF  618 (844)
T ss_dssp             CCEEEEEEECCCCSSSCCSHHHHHHH----TTTTTCCCGGGCCCSSCSSSCSC----CTTTCCC--CCC----------C
T ss_pred             cCEEEecCCCcccccccHHHHHHHHh----cCcccccccccCccCCchhhCCC----ccccCcc--ccCCchhhccccce
Confidence            57899999999999999999999963    2223333 37789999999 777    8988876  368753211    0


Q ss_pred             eccccccCCccccCCCCCccceeee--cCCCceeEEEcCcccccccCCCCCCCcceecccCCCCCceeecCCCCHHHHHH
Q psy11469         75 SLCRCCEYGACDCRMSCPFNCTCYN--DQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQAYVIYSLKDEPFVKQ  152 (267)
Q Consensus        75 ~~~~~~~~~~~~~~~~cp~~c~c~~--~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~DaFIsy~~~D~~~v~~  152 (267)
                      ....++...... .++....+.+++  ...||..+.. .+  +....+.       -.-++..|||||||+++|++||.+
T Consensus       619 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~~~-~~--~~~~~~~-------~~~~~~~yd~fisy~~~d~~~v~~  687 (844)
T 3j0a_A          619 SLFIVCTVTLTL-FLMTILTVTKFRGFCFICYKTAQR-LV--FKDHPQG-------TEPDMYKYDAYLCFSSKDFTWVQN  687 (844)
T ss_dssp             HHHHHHHHHHHH-HHHTTTSHHHHC-------------------CCCGG-------GSSSCCCCSEEEECCSTTHHHHHH
T ss_pred             ehhHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHH-HH--hcccccc-------ccccceeccEEEEeeCCcHHHHHH
Confidence            000000000000 111111111221  1224443321 11  1111000       011345799999999999999998


Q ss_pred             hhhhccCCC---CCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHHHHHHHHhhcCCCcEE
Q psy11469        153 ILLPGLAFK---DPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLF  229 (267)
Q Consensus       153 ~L~~~Le~~---~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~~a~~~~~~~~~~~lI  229 (267)
                      +|.+.||++   ++||++|+++|||.||+ ++.++|.+||++|||+|+|+|++|++|+||++|++.|+++++++++++||
T Consensus       688 ~l~~~Le~~~~~~~~~~~~~~~rd~~~G~-~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i  766 (844)
T 3j0a_A          688 ALLKHLDTQYSDQNRFNLCFEERDFVPGE-NRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALI  766 (844)
T ss_dssp             THHHHHHSTTTTTTCSCEECSSSSCCSSS-CHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEE
T ss_pred             HHHHHHhhccccCCceEEEEEccccCCCc-hHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEE
Confidence            999999983   47999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCccccCCccHHHHHHHhhhcc
Q psy11469        230 IIMLPPHSNILVIMPMSIYHLSVLLQDNQ  258 (267)
Q Consensus       230 ~v~~~~i~~~~~~~p~~~~~l~~l~~~~~  258 (267)
                      ||++|+++.+.  + .++..||++|+++.
T Consensus       767 ~i~~~~~~~~~--~-~~~~~l~~~~~~~~  792 (844)
T 3j0a_A          767 MVVVGSLSQYQ--L-MKHQSIRGFVQKQQ  792 (844)
T ss_dssp             EEESSCCCSSS--C-CSCSSTTHHHHTTC
T ss_pred             EEEeccCChHH--h-hhhHHHHHHHhhCC
Confidence            99999999987  4 35667777777653

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.97  E-value=1.1e-31  Score=224.32  Aligned_cols=125  Identities=26%  Similarity=0.416  Sum_probs=108.8

Q ss_pred             cCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHH
Q psy11469        132 DDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRP  211 (267)
Q Consensus       132 ~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~  211 (267)
                      ++..|||||||+++|++||.++|.+.||++++|+++|+++||+.||. ++.++|.+||++||++|+|||++|++|+||.+
T Consensus        32 ~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~-~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~  110 (178)
T 2j67_A           32 RNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGK-SISENIVSFIEKSYKSIFVLSPNFVQNEWCHY  110 (178)
T ss_dssp             CSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTS-CHHHHHHHHHHTEEEEEEEECHHHHHHTGGGT
T ss_pred             CCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCc-cHHHHHHHHHHhCCEEEEEecccccccchHHH
Confidence            34469999999999999998779999998547999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhccc
Q psy11469        212 EFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQA  259 (267)
Q Consensus       212 e~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~~~  259 (267)
                      |++.|+++.+++++++||||++++++...  +|..+..||.+|+.+.-
T Consensus       111 El~~a~~~~~~~~~~~vIpV~~~~i~~~~--lp~~~~~Lr~~l~~~t~  156 (178)
T 2j67_A          111 EFYFAHHNLFHENSDHIILILLEPIPFYC--IPTRYHKLKALLEKKAY  156 (178)
T ss_dssp             HHHHTTCC-------CEEEEESSCCCGGG--SCTTCHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhcCCCEEEEEEecCCChHH--CChhHHHHHHHHhcCCE
Confidence            99999998888888899999999999987  88888899999886653

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.97  E-value=8.7e-32  Score=218.95  Aligned_cols=123  Identities=24%  Similarity=0.439  Sum_probs=113.9

Q ss_pred             CCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469        133 DTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE  212 (267)
Q Consensus       133 ~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e  212 (267)
                      +..|||||||+++|++||.++|.+.||+..+|+++|+++||+.||. ++.++|.+||++||++|+|+|++|++|+||..|
T Consensus         3 ~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~-~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E   81 (149)
T 1fyx_A            3 NIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGK-WIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE   81 (149)
T ss_dssp             SCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSS-CHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             CccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCch-hHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence            3469999999999999998669999998546999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhcc
Q psy11469        213 FKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQ  258 (267)
Q Consensus       213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~~  258 (267)
                      ++.|+++.+++++++||||++++++...  +|.++..||.+|+.+.
T Consensus        82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~--~p~~~~~Lr~~l~~~t  125 (149)
T 1fyx_A           82 LDFSHFRLFDENNDAAILILLEPIEKKA--IPQRFXKLRKIMNTKT  125 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCCTTT--SCSSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCChhh--cChHHHHHHHHhcCCC
Confidence            9999988888888899999999999987  8888899999998654

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.7e-29  Score=207.58  Aligned_cols=119  Identities=21%  Similarity=0.257  Sum_probs=99.0

Q ss_pred             CCCceeecCCCCHHHHHH----------h-hhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCc
Q psy11469        135 PCQAYVIYSLKDEPFVKQ----------I-LLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAF  203 (267)
Q Consensus       135 ~~DaFIsy~~~D~~~v~~----------~-L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~f  203 (267)
                      .|||||||+++|.+||.+          + |.+.||++ +||++|+++||+.||. ++.++|.++|++||++|+|||++|
T Consensus         2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~-~g~~l~~~~rD~~~G~-~i~~~i~~~I~~Sr~~IvVlS~~y   79 (159)
T 1t3g_A            2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKH-YGYKLFIPDRDLIPTG-TYIEDVARCVDQSKRLIIVMTPNY   79 (159)
T ss_dssp             CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHT-SCCCEECHHHHCCCCT-THHHHHHHHHHTBSEEEEEECHHH
T ss_pred             CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCC-CCeEEEEEcccccCcc-chHHHHHHHHHHcCEEEEEEccch
Confidence            489999999999765543          2 44579953 7999999999999999 999999999999999999999999


Q ss_pred             c-cccCcHHHHHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhc
Q psy11469        204 I-YGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDN  257 (267)
Q Consensus       204 l-~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~  257 (267)
                      + +|+||.+|++.|+++++++++.+||||++++++...  ....+..||++|+.+
T Consensus        80 ~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~~--~~~~~~~L~~~l~~~  132 (159)
T 1t3g_A           80 VVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIM--NYQEVEALKHTIKLL  132 (159)
T ss_dssp             HHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSHH--HHHHHHHHHHTCSSE
T ss_pred             hhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccccc--cccchHHHHHHHhhC
Confidence            8 999999999999999999988999999999998642  001245799988855

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.94  E-value=6.8e-29  Score=204.13  Aligned_cols=105  Identities=24%  Similarity=0.284  Sum_probs=97.3

Q ss_pred             cCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHH-hcCEEEEEecCCcccccCcH
Q psy11469        132 DDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIE-RSEKVIMVLSRAFIYGDWSR  210 (267)
Q Consensus       132 ~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~-~Sr~~I~VlS~~fl~s~w~~  210 (267)
                      ++..|||||||+++|++||. +|.+.||+..+||++|+++||+.||. ++.++|.++|+ +||++|+|+|++|++|+||.
T Consensus        13 ~~~~yDvFISys~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~-~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~   90 (160)
T 2js7_A           13 MPERFDAFICYCPSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGT-CVWSIASELIEKRCRRMVVVVSDDYLQSKECD   90 (160)
T ss_dssp             CTTCEEEEEECCGGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSC-SCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred             CCcceEEEEEcccccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCC-cHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence            34579999999999999998 89999998646899999999999999 99999999999 79999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCcEEEEEcCCCCC
Q psy11469        211 PEFKSALNGSLMRHRKPLFIIMLPPHSN  238 (267)
Q Consensus       211 ~e~~~a~~~~~~~~~~~lI~v~~~~i~~  238 (267)
                      +|++.|+++.+++++++||||++++++.
T Consensus        91 ~El~~a~~~~~~~~~~~vIpV~~~~~~~  118 (160)
T 2js7_A           91 FQTKFALSLSPGAHQKRLIPIKYKAMKK  118 (160)
T ss_dssp             HHHHHHHHHCTTHHHHTEEEEESSCCCC
T ss_pred             HHHHHHHHHHHccCCCEEEEEEEcccch
Confidence            9999999988777778999999999864

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.93  E-value=5.4e-28  Score=195.86  Aligned_cols=109  Identities=14%  Similarity=0.162  Sum_probs=78.4

Q ss_pred             CCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469        133 DTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE  212 (267)
Q Consensus       133 ~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e  212 (267)
                      +..|||||||+++|++||. +|.+.||++.+|+++|+++||+.||+ ++.++|.+||++||++|+|||++|++|.||.+|
T Consensus         8 ~k~YDvFISy~~~D~~~v~-~L~~~Le~~~~g~~~~l~~rD~~~G~-~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~E   85 (146)
T 3ub2_A            8 SKDYDVCVCHSEEDLVAAQ-DLVSYLEGSTASLRCFLQLRDATPGG-AIVSELCQALSSSHCRVLLITPGFLQDPWCKYQ   85 (146)
T ss_dssp             SSSEEEEEECCGGGHHHHH-HHHHHHHC-------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHH
T ss_pred             CCcceEEEeCChhhHHHHH-HHHHHHhCcCCCeEEEEECccccccc-cHHHHHHHHHHhCCEEEEEECcccccCHHHHHH
Confidence            3469999999999999996 89999998546999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcEEEEEcCCCCCccccCCccH
Q psy11469        213 FKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSI  247 (267)
Q Consensus       213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~  247 (267)
                      ++.|+++.+..+ ++||||+ ++++...  +|..+
T Consensus        86 l~~al~~~~~~~-~~vIpv~-~~v~~~~--lp~~L  116 (146)
T 3ub2_A           86 MLQALTEAPGAE-GCTIPLL-SGLSRAA--YPPEL  116 (146)
T ss_dssp             HHHHHHTSSSSS-SEEEEEE-CSCCGGG--SCGGG
T ss_pred             HHHHHHHHhhcC-CcEEEEE-cCCChhh--CCHHH
Confidence            999999876544 4889887 4465554  55433

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.81  E-value=6.4e-21  Score=161.02  Aligned_cols=100  Identities=12%  Similarity=0.176  Sum_probs=90.8

Q ss_pred             CCCceeecCCCCH--HHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469        135 PCQAYVIYSLKDE--PFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE  212 (267)
Q Consensus       135 ~~DaFIsy~~~D~--~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e  212 (267)
                      .|||||||+++|.  .||. +|.+.|++  .|+++|++++++.+|+ .+.++|.+||++||..|+|+|++|+.|.||..|
T Consensus        35 ~yDVFISfrg~D~r~~Fv~-~L~~aL~~--~GI~~f~D~~el~~G~-~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E  110 (204)
T 3ozi_A           35 EYEVFLSFRGPDTREQFTD-FLYQSLRR--YKIHTFRDDDELLKGK-EIGPNLLRAIDQSKIYVPIISSGYADSKWCLME  110 (204)
T ss_dssp             CCCEEEEECHHHHTTTHHH-HHHHHHHH--TTCCEEEEETTTCCGG-GTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred             CCeEEEeccccCCCHHHHH-HHHHHHHH--CCCcEEEeCCccCCCC-chHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence            6999999999996  5886 89999998  4999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcEEEEEcCCCCCc
Q psy11469        213 FKSALNGSLMRHRKPLFIIMLPPHSNI  239 (267)
Q Consensus       213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~  239 (267)
                      +..+++..-+.++++||||||+ +.+.
T Consensus       111 L~~I~e~~~~~~~~~ViPIFY~-VdPs  136 (204)
T 3ozi_A          111 LAEIVRRQEEDPRRIILPIFYM-VDPS  136 (204)
T ss_dssp             HHHHHHHHHHCTTSEECCEEES-SCHH
T ss_pred             HHHHHHHHHhcCCeeeEEEEee-cCHH
Confidence            9999987655567799999996 5543

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.81  E-value=2.6e-21  Score=157.75  Aligned_cols=97  Identities=20%  Similarity=0.273  Sum_probs=87.9

Q ss_pred             CCCCceeecCCCCH-HHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469        134 TPCQAYVIYSLKDE-PFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE  212 (267)
Q Consensus       134 n~~DaFIsy~~~D~-~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e  212 (267)
                      ..||+||||+++|+ .||. +|...|++  .|+++|++++|+.+|. .+.++|.++|++|+.+|+|+|++|++|.||..|
T Consensus        19 ~~~dvFISy~~~D~~~~~~-~L~~~L~~--~gi~v~~D~~~l~~G~-~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           19 PPHDIFISHAWEDKADFVE-ALAHTLRA--AGAEVWYDDFSLRPGD-SLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             CSEEEEEEEEGGGTTTTHH-HHHHHHHH--HTCCEECGGGEECTTC-CHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCceEEEECcccChHHHHH-HHHHHHHH--CCCcEEEcHHhCCCcc-HHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            36899999999997 5786 89999998  5999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcEEEEEcCC
Q psy11469        213 FKSALNGSLMRHRKPLFIIMLPP  235 (267)
Q Consensus       213 ~~~a~~~~~~~~~~~lI~v~~~~  235 (267)
                      +..|+++.. ..+++||||+++.
T Consensus        95 l~~~~~~~~-~~~~~iiPV~~~v  116 (154)
T 3h16_A           95 LDGLFQLES-SGRSRILPIWHKV  116 (154)
T ss_dssp             HHHHTCCCT-TSCCCEEEEEESC
T ss_pred             HHHHHHHHh-cCCCEEEEEEecC
Confidence            999987643 3456899999963

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.80  E-value=8.4e-21  Score=157.49  Aligned_cols=100  Identities=13%  Similarity=0.208  Sum_probs=77.1

Q ss_pred             CCCceeecCCCCH--HHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHH
Q psy11469        135 PCQAYVIYSLKDE--PFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPE  212 (267)
Q Consensus       135 ~~DaFIsy~~~D~--~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e  212 (267)
                      .|||||||+++|.  .||. +|.+.|++  .|+++|++++|+.+|+ .+.++|.+||++||..|+|+|++|++|.||..|
T Consensus         8 ~yDVFiSfrg~D~r~~Fv~-~L~~~L~~--~gi~~f~D~~~l~~G~-~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E   83 (176)
T 3jrn_A            8 KYDVFLSFRGHDTRHNFIS-FLYKELVR--RSIRTFKDDKELENGQ-RFSPELKSPIEVSRFAVVVVSENYAASSWCLDE   83 (176)
T ss_dssp             CEEEEEEECHHHHTTTHHH-HHHHHHHH--TTCCEECCCC---------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred             CCeEEEECcCcccChHHHH-HHHHHHHH--CCCEEEEEcccccCCC-chHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence            5899999999996  6886 89999998  4999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcEEEEEcCCCCCcc
Q psy11469        213 FKSALNGSLMRHRKPLFIIMLPPHSNIL  240 (267)
Q Consensus       213 ~~~a~~~~~~~~~~~lI~v~~~~i~~~~  240 (267)
                      +..+++.. ++.+.+|||||++ +.+..
T Consensus        84 L~~i~~~~-~~~~~~ViPIfy~-V~ps~  109 (176)
T 3jrn_A           84 LVTIMDFE-KKGSITVMPIFYG-VEPNH  109 (176)
T ss_dssp             HHHHHHHH-HTTSCEEEEEECS-SCHHH
T ss_pred             HHHHHhhh-ccCCCEEEEEEec-CCHHH
Confidence            99999876 5677899999996 54433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.18  E-value=7.7e-12  Score=98.66  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceecc
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCD   68 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~   68 (267)
                      |++|+|++|||.|||++.||.+|+..    ... ......++|++|.. +|+    +|.++..+++.|.
T Consensus        57 L~~L~L~~NP~~CdC~l~~l~~wl~~----~~~-~~~~~~~~C~~P~~l~g~----~l~~l~~~~l~c~  116 (130)
T 3rfe_A           57 LRTAHLGANPWRCDCRLVPLRAWLAG----RPE-RAPYRDLRCVAPPALRGR----LLPYLAEDELRAA  116 (130)
T ss_dssp             CCEEECCSSCCBCSGGGHHHHHHHHT----SSC-SGGGTTCBCCBSTTTTTC----BGGGCCHHHHHHT
T ss_pred             cCEEEecCCCeeccCccHHHHHHHHh----Ccc-cccccCcEeCcChHHcCC----CcccCCHHHhhCc
Confidence            67899999999999999999999973    111 12247899999999 777    9999999888865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.84  E-value=1.2e-09  Score=104.61  Aligned_cols=58  Identities=14%  Similarity=0.357  Sum_probs=47.1

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccC
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDY   69 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~   69 (267)
                      |++|+|++|||.|||++.||.+|++.    ....+.+...++|++|.. +|+    +|.+++   +.|..
T Consensus       569 L~~L~L~~Np~~C~C~~~~~~~wl~~----~~~~~~~~~~~~C~~P~~~~g~----~l~~~~---~~C~~  627 (635)
T 4g8a_A          569 LAFLNLTQNDFACTCEHQSFLQWIKD----QRQLLVEVERMECATPSDKQGM----PVLSLN---ITCQM  627 (635)
T ss_dssp             CCEEECTTCCBCCSGGGHHHHHHHHH----TTTTBSCGGGCBBCSSTTTTTC----BGGGCC---CCC--
T ss_pred             CCEEEeeCCCCcccCCcHHHHHHHHh----CCCccCCCCCceeCCchHHCCC----Eeeeec---cCCCC
Confidence            67899999999999999999999974    223356678899999999 777    999996   46864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.71  E-value=6.4e-09  Score=88.21  Aligned_cols=61  Identities=28%  Similarity=0.521  Sum_probs=48.2

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCCCc
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYEEH   72 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~~~   72 (267)
                      |++|+|++|||.|||++.||.+|+..    ..   .....++|++|.. +|+    .+.+++++++.|.....
T Consensus       154 L~~L~L~~N~~~c~c~l~~l~~~l~~----~~---~~~~~~~C~~P~~l~g~----~l~~l~~~~~~c~~~~~  215 (220)
T 2v9t_B          154 IQTMHLAQNPFICDCHLKWLADYLHT----NP---IETSGARCTSPRRLANK----RIGQIKSKKFRCSAAAH  215 (220)
T ss_dssp             CCEEECCSSCEECSGGGHHHHHHHHH----CC---CBCSCCBEEESGGGTTC----BGGGSCGGGCCC-----
T ss_pred             CCEEEeCCCCcCCCCccHHHHHHHHh----CC---CCccCCCcCCchHHcCC----chhhCCHHHCcCccccc
Confidence            67899999999999999999999973    11   1236789999999 777    99999999999986543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.69  E-value=7.1e-09  Score=86.29  Aligned_cols=59  Identities=25%  Similarity=0.496  Sum_probs=47.8

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE   70 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~   70 (267)
                      |++|+|++|||.|||++.||.+|+..    .   ......++|++|.. +|+    .+.+++.+.+.|...
T Consensus       128 L~~L~L~~N~~~C~c~l~~l~~~~~~----~---~~~~~~~~C~~P~~l~g~----~l~~~~~~~~~~~~~  187 (193)
T 2wfh_A          128 LSHLAIGANPLYCDCNMQWLSDWVKS----E---YKEPGIARCAGPGEMADK----LLLTTPSKKFTCAAA  187 (193)
T ss_dssp             CCEEECCSSCEECSGGGHHHHHHHHH----S---SCCCSCCBEEESGGGTTC----BTTTSCGGGCCC---
T ss_pred             ccEEEeCCCCeecCCcCHHHHHHHHh----c---cCCCCCcCcCCchHHCCC----CcccCChHHeeehhh
Confidence            67899999999999999999999973    1   12346789999999 777    999999988888754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.56  E-value=3.8e-08  Score=91.48  Aligned_cols=61  Identities=20%  Similarity=0.334  Sum_probs=46.1

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE   70 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~   70 (267)
                      |++|+|++|||.|||++.||..|++..    . .......++|.+|.. +|+    .+.+++...+.|...
T Consensus       281 L~~L~L~~Np~~CdC~l~~l~~~~~~~----~-~~~~~~~~~C~~P~~l~g~----~l~~l~~~~~~C~~P  342 (440)
T 3zyj_A          281 LERIHLHHNPWNCNCDILWLSWWIKDM----A-PSNTACCARCNTPPNLKGR----YIGELDQNYFTCYAP  342 (440)
T ss_dssp             CCEEECCSSCEECSSTTHHHHHHHHTT----S-CSSCSCCCBEEESTTTTTC----BCC----CCSCCCCC
T ss_pred             CCEEEcCCCCccCCCCchHHHHHHHhc----c-ccCCccccCCCChhHhcCc----cHhHhhhhhccCCCC
Confidence            678999999999999999999999731    1 112236789999999 777    999999988999754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.45  E-value=9e-08  Score=79.25  Aligned_cols=60  Identities=22%  Similarity=0.503  Sum_probs=49.7

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCCC
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYEE   71 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~~   71 (267)
                      |++|+|++|||.|+|.+.||..|+...    .  + ..+...|.+|.. +|+    ++.+++.+++.|....
T Consensus       128 L~~L~L~~N~l~c~c~l~~~~~~l~~~----~--~-~~~~~~C~~P~~l~~~----~l~~l~~~~~~C~~~~  188 (192)
T 1w8a_A          128 LTSLNLASNPFNCNCHLAWFAEWLRKK----S--L-NGGAARCGAPSKVRDV----QIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             CCEEECTTCCBCCSGGGHHHHHHHHHH----C--C-SGGGCBBCSSTTTTTS----BGGGSCTTTCCCCCC-
T ss_pred             CCEEEeCCCCccCcCcchHHHHHHHHc----C--C-CCCCCCCCCChHHcCC----ChhhCcHhhcCcCCCC
Confidence            678999999999999999999999731    1  1 135789999999 777    9999999999998653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.40  E-value=1e-07  Score=88.92  Aligned_cols=61  Identities=20%  Similarity=0.380  Sum_probs=49.0

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE   70 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~   70 (267)
                      |++|+|++|||.|||++.||.+|++...   .  ......++|.+|.. +|+    .+.+++...+.|...
T Consensus       292 L~~L~L~~Np~~CdC~~~~l~~~l~~~~---~--~~~~~~~~C~~P~~l~g~----~l~~~~~~~~~C~~P  353 (452)
T 3zyi_A          292 LVELHLHHNPWNCDCDILWLAWWLREYI---P--TNSTCCGRCHAPMHMRGR----YLVEVDQASFQCSAP  353 (452)
T ss_dssp             CCEEECCSSCEECSTTTHHHHHHHHHHC--------CCSSCBEEESTTTTTC----BTTSCCGGGCCCCCC
T ss_pred             CCEEEccCCCcCCCCCchHHHHHHHHhC---c--cCCccCcEeCCchHhccc----hhhccchhhhcccCc
Confidence            6789999999999999999999997421   1  11235689999999 777    999999888999754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.38  E-value=1.7e-07  Score=79.26  Aligned_cols=59  Identities=25%  Similarity=0.466  Sum_probs=48.4

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE   70 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~   70 (267)
                      |++|+|++|||.|+|++.||..|+..    ..  + .....+|..|.. +|+    ++.+++.+++.|...
T Consensus       155 L~~L~L~~N~l~c~c~l~~l~~~~~~----~~--~-~~~~~~C~~P~~l~g~----~l~~l~~~~~~~~~~  214 (220)
T 2v70_A          155 LSTLNLLANPFNCNCYLAWLGEWLRK----KR--I-VTGNPRCQKPYFLKEI----PIQDVAIQDFTCDDA  214 (220)
T ss_dssp             CCEEECCSCCEECSGGGHHHHHHHHH----SC--C-BCCCCEEEESGGGTTE----EGGGSCGGGCCCCC-
T ss_pred             CCEEEecCcCCcCCCchHHHHHHHHh----cC--c-cccCCccCCChHHCCC----ChhhCCHHHcccccc
Confidence            67899999999999999999999973    11  1 236779999999 777    999999988877754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.13  E-value=2.7e-07  Score=89.97  Aligned_cols=60  Identities=18%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             CCeEEecCCCcccccCc-hHHHHHHhhccCCCCcccccC-CCceecCCcc-cccccccccccccCCceecc
Q psy11469          1 MPKFFLGENPFECDCKM-EWLQRAHEIHKDGIYPEIADL-ESLYCRMVYE-ENLITYDNIFIADSSKFLCD   68 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l-~wl~~w~~~~~~~~~~~~~~~-~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~   68 (267)
                      |++|+|++|||.|||++ .||.+|++.    ....+.+. ..++|++|.. +|+    ++.++++.+..|.
T Consensus       611 L~~l~l~~N~~~c~c~~~~~~~~~~~~----~~~~~~~~~~~~~C~~p~~~~g~----~l~~~~~~~~~~~  673 (680)
T 1ziw_A          611 LTELDMRFNPFDCTCESIAWFVNWINE----THTNIPELSSHYLCNTPPHYHGF----PVRLFDTSSCKDS  673 (680)
T ss_dssp             CSEEECTTCCCCBCCCCCSSEECCSSC----C---------------------------------------
T ss_pred             cCEEEccCCCcccCCccHHHHHHHHHh----cCcccccccCCcEECCchHHCCC----cccccChhhcCCC
Confidence            67899999999999996 999999862    33334453 6889999999 777    9999998765554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.11  E-value=9.2e-07  Score=84.87  Aligned_cols=58  Identities=17%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceecc
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCD   68 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~   68 (267)
                      |++|+|++|||.|+|++.||.+|+..    ....+.+...++|.+|.. +|+    ++.+++.+  .|.
T Consensus       547 L~~l~l~~N~~~c~c~~~~~~~~l~~----~~~~~~~~~~~~C~~p~~~~~~----~l~~~~~~--~c~  605 (606)
T 3vq2_A          547 LAFFNLTNNSVACICEHQKFLQWVKE----QKQFLVNVEQMTCATPVEMNTS----LVLDFNNS--TCY  605 (606)
T ss_dssp             CCEEECCSCCCCCSSTTHHHHTTTTT----SSSSBSSGGGCCCC-------------------------
T ss_pred             CcEEEccCCCcccCCccHHHHHHHHc----CcccccCCccceeCCChHhCCC----Eeeecccc--cCC
Confidence            67899999999999999999999863    223355668999999999 777    99999874  464

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.59  E-value=4e-05  Score=61.95  Aligned_cols=51  Identities=22%  Similarity=0.418  Sum_probs=36.2

Q ss_pred             CCeEEecCCCcccccC-chHHHHHHhhccCCCCccc-----ccCCCceecCCcccccccccccccccC
Q psy11469          1 MPKFFLGENPFECDCK-MEWLQRAHEIHKDGIYPEI-----ADLESLYCRMVYEENLITYDNIFIADS   62 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~-l~wl~~w~~~~~~~~~~~~-----~~~~~~~C~~P~~~g~l~~~~l~~~~~   62 (267)
                      |++|+|++|||.|+|. +.||..|+...    ...+     .+.+.++|+.|..       ++.++..
T Consensus       104 L~~L~L~~N~~~c~c~~l~~l~~~l~~~----~~~~~~~~~~~~~~~~C~~~~~-------~~~~~~~  160 (170)
T 3g39_A          104 LTHIWLLNNPWDCACSDILYLSRWISQH----PGLVFGYLNLDPDSARCSGTNT-------PVRAVTE  160 (170)
T ss_dssp             CCEEECCSSCBCTTBGGGHHHHHHHHHC----GGGEECSSSBCGGGSBBCC-CC-------BGGGCCS
T ss_pred             CCEEEeCCCCCCCCchhHHHHHHHHHhC----cceeeccccCCcccceeCCCCc-------cchhccc
Confidence            6899999999999995 99999999731    1112     2457889977633       5555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.58  E-value=3.7e-05  Score=71.60  Aligned_cols=57  Identities=19%  Similarity=0.420  Sum_probs=43.7

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccC----Cceecc
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADS----SKFLCD   68 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~----~~~~C~   68 (267)
                      |++|+|++|||.|||++.|+.+|..    +.   ....+...|.+|.. +|+    .+.++..    ..+.|.
T Consensus       322 L~~L~l~~N~l~c~c~~~~~~~~~~----~~---~~~~~~~~C~~p~~~~g~----~l~~~~~~~~~~~~~C~  383 (477)
T 2id5_A          322 LETLILDSNPLACDCRLLWVFRRRW----RL---NFNRQQPTCATPEFVQGK----EFKDFPDVLLPNYFTCR  383 (477)
T ss_dssp             CCEEECCSSCEECSGGGHHHHTTTT----SS---CCTTCCCBEEESGGGTTC----BGGGSCSSCCTTSSCCE
T ss_pred             cCEEEccCCCccCccchHhHHhhhh----cc---ccCccCceeCCchHHcCC----chhhCccccccceeEec
Confidence            6889999999999999999998863    11   12347789999999 777    8887754    245665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.52  E-value=5.3e-05  Score=66.51  Aligned_cols=26  Identities=31%  Similarity=0.726  Sum_probs=24.0

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhh
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEI   26 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~   26 (267)
                      |+.|+|++|||.|+|++.||.+|+..
T Consensus       197 L~~l~L~~Np~~C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          197 LPFAFLHGNPWLCNCEILYFRRWLQD  222 (290)
T ss_dssp             CSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             CCeEEeCCCCccCcCccHHHHHHHHh
Confidence            57899999999999999999999973

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.35  E-value=9.9e-05  Score=65.81  Aligned_cols=43  Identities=28%  Similarity=0.509  Sum_probs=34.7

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE   48 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~   48 (267)
                      |++|+|++|+|.|+|++.||.+|+..    ... ..+.+.++|..|..
T Consensus       105 L~~l~l~~N~~~c~c~l~~~~~~~~~----~~~-~l~~~~~~C~~~~~  147 (347)
T 2ifg_A          105 LQELVLSGNPLHCSCALRWLQRWEEE----GLG-GVPEQKLQCHGQGP  147 (347)
T ss_dssp             CCEEECCSSCCCCCGGGHHHHHHHHT----TCS-SCGGGCCCCSSSSC
T ss_pred             ceEEEeeCCCccCCCccHHHHHHHHh----Ccc-cccccCCCCCCChH
Confidence            68899999999999999999999963    111 22458899998875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.35  E-value=0.00012  Score=59.44  Aligned_cols=26  Identities=23%  Similarity=0.738  Sum_probs=23.7

Q ss_pred             CCeEEecCCCcccccC-chHHHHHHhh
Q psy11469          1 MPKFFLGENPFECDCK-MEWLQRAHEI   26 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~-l~wl~~w~~~   26 (267)
                      |++|+|++|||.|+|. +.||..|+..
T Consensus       107 L~~L~L~~N~~~c~~~~~~~l~~~~~~  133 (174)
T 2r9u_A          107 LTHIYLYNNPWDCECRDIMYLRNWVAD  133 (174)
T ss_dssp             CSEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred             CCEEEeCCCCcccccccHHHHHHHHHh
Confidence            6889999999999996 9999999963

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.31  E-value=0.00015  Score=62.59  Aligned_cols=54  Identities=13%  Similarity=0.365  Sum_probs=38.6

Q ss_pred             CCeEEecCCCcccccC-chHHHHHHhhccCCCCcccccCCCceecCCcccccccccccccccCCc
Q psy11469          1 MPKFFLGENPFECDCK-MEWLQRAHEIHKDGIYPEIADLESLYCRMVYEENLITYDNIFIADSSK   64 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~-l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~~g~l~~~~l~~~~~~~   64 (267)
                      |+.|+|++|||.|+|+ +.||..|+....   ...+.+.+...|..+   |+    .+.++...+
T Consensus       207 L~~L~l~~N~~~c~c~~~~~~~~~l~~~~---~~~~~~~~~~~C~~~---~~----~~~~~~~~~  261 (270)
T 2o6q_A          207 LKMLQLQENPWDCTCNGIIYMAKWLKKKA---DEGLGGVDTAGCEKG---GK----AVLEITEKD  261 (270)
T ss_dssp             CCEEECCSSCBCCSSSSSHHHHHHHHHHH---HTTCSSTTCCBBSSS---CS----BGGGCCTTT
T ss_pred             CCEEEecCCCeeCCCccHHHHHHHHHhhc---cccccCccccccCCC---Ce----EeEEecchh
Confidence            6789999999999998 789999986421   111334577899653   44    677776554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.30  E-value=0.00017  Score=60.90  Aligned_cols=47  Identities=21%  Similarity=0.433  Sum_probs=32.5

Q ss_pred             CCeEEecCCCcccccC-chHHHHHHhhccCCC----CcccccCCCceecCCc
Q psy11469          1 MPKFFLGENPFECDCK-MEWLQRAHEIHKDGI----YPEIADLESLYCRMVY   47 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~-l~wl~~w~~~~~~~~----~~~~~~~~~~~C~~P~   47 (267)
                      |++|+|++|||.|+|. +.|+..|+.......    ...+.+.+.+.|+.|.
T Consensus       161 L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~~  212 (229)
T 3e6j_A          161 LTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGTN  212 (229)
T ss_dssp             CCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTTC
T ss_pred             CCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCCC
Confidence            6889999999999995 999999996311000    0012345778887763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.29  E-value=6.2e-05  Score=67.97  Aligned_cols=43  Identities=33%  Similarity=0.604  Sum_probs=32.6

Q ss_pred             CeEEecCCCcccccCchHH-HHHHhhccCCCCccccc-CCCceecCCcc
Q psy11469          2 PKFFLGENPFECDCKMEWL-QRAHEIHKDGIYPEIAD-LESLYCRMVYE   48 (267)
Q Consensus         2 ~~l~L~~NP~~CdC~l~wl-~~w~~~~~~~~~~~~~~-~~~~~C~~P~~   48 (267)
                      +.|+|++|||.|||++.|| ..|+..    ....+.+ ...++|.+|..
T Consensus       192 ~~l~l~~N~~~C~C~l~~~~~~~~~~----~~~~~~~~~~~~~C~~p~~  236 (361)
T 2xot_A          192 NGLYLHNNPLECDCKLYQLFSHWQYR----QLSSVMDFQEDLYCMHSKK  236 (361)
T ss_dssp             TTEECCSSCEECCHHHHHHHHHHHHT----TCHHHHTTGGGCEEESSSC
T ss_pred             ceEEecCCCccCCcCcHHHHHHHHHh----cCCchhccCcCCEeCCChH
Confidence            5799999999999999996 568852    2222333 36899999987

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=97.14  E-value=8.1e-05  Score=56.68  Aligned_cols=74  Identities=15%  Similarity=0.119  Sum_probs=58.0

Q ss_pred             CCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHH
Q psy11469        135 PCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFK  214 (267)
Q Consensus       135 ~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~  214 (267)
                      .|.+||||+.+| +  .+.|...|. . +||...-                 +.|+.|..+|++.++....++|+++|++
T Consensus         4 ~~~lFISh~~~d-~--~~~L~~~l~-~-~~f~~~~-----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~   61 (111)
T 1eiw_A            4 EIRLYITEGEVE-D--YRVFLERLE-Q-SGLEWRP-----------------ATPEDADAVIVLAGLWGTRRDEILGAVD   61 (111)
T ss_dssp             CEEEEECCCCSH-H--HHHHHHHHH-H-HCSCEEE-----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred             eEEEEEecccHh-H--HHHHHHHHh-C-CCCeeec-----------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence            468999999998 2  346777775 3 5775541                 5678999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEcCC
Q psy11469        215 SALNGSLMRHRKPLFIIMLPP  235 (267)
Q Consensus       215 ~a~~~~~~~~~~~lI~v~~~~  235 (267)
                      .|..     .+++||.|....
T Consensus        62 ~A~~-----~gkpIigV~~~g   77 (111)
T 1eiw_A           62 LARK-----SSKPIITVRPYG   77 (111)
T ss_dssp             HHTT-----TTCCEEEECCSS
T ss_pred             HHHH-----cCCCEEEEEcCC
Confidence            9964     467787776544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.06  E-value=0.0005  Score=53.43  Aligned_cols=41  Identities=29%  Similarity=0.707  Sum_probs=37.4

Q ss_pred             CCCccceeeecCCCceeEEEcCccccc--ccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYN--HVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~--~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .||..|.|.      ...|+|++++|+  .+|..+|.+.+.|+|++|.+
T Consensus         1 ~CP~~C~C~------~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l   43 (130)
T 3rfe_A            1 PCPAPCSCA------GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNL   43 (130)
T ss_dssp             CCCTTCEEE------TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCC
T ss_pred             CcCCCCEEc------CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcC
Confidence            389999997      468999999999  99999999999999999975

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.72  E-value=0.00093  Score=56.80  Aligned_cols=26  Identities=23%  Similarity=0.499  Sum_probs=24.1

Q ss_pred             CCeEEecCCCcccc-cCchHHHHHHhh
Q psy11469          1 MPKFFLGENPFECD-CKMEWLQRAHEI   26 (267)
Q Consensus         1 ~~~l~L~~NP~~Cd-C~l~wl~~w~~~   26 (267)
                      |++|+|++|||.|+ |++.||.+|+..
T Consensus       181 L~~L~l~~N~~~c~~~~~~~l~~~~~~  207 (251)
T 3m19_A          181 LQTITLFGNQFDCSRCEILYLSQWIRE  207 (251)
T ss_dssp             CCEEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred             CCEEEeeCCceeCCccccHHHHHHHHh
Confidence            67999999999999 999999999963

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.70  E-value=0.00075  Score=64.20  Aligned_cols=49  Identities=14%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             CCeEEecCCCcccccCchHHHH-HHhhccCCCCcccc------cCCCceecCCcccccccccccccc
Q psy11469          1 MPKFFLGENPFECDCKMEWLQR-AHEIHKDGIYPEIA------DLESLYCRMVYEENLITYDNIFIA   60 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~-w~~~~~~~~~~~~~------~~~~~~C~~P~~~g~l~~~~l~~~   60 (267)
                      |++|+|++|||.|+|++.||.+ |...    ....+.      ....++|.+   +|+    ++.++
T Consensus       499 L~~L~l~~N~~~c~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~C~~---~g~----~l~~~  554 (562)
T 3a79_B          499 LQYIWLHDNPWDCTCPGIRYLSEWINK----HSGVVRNSAGSVAPDSAKCSG---SGK----PVRSI  554 (562)
T ss_dssp             CCCEECCSCCBCCCHHHHHHHHHHHHH----TTTTEECSSSSBCSSSSCBSS---SCC----CTTTC
T ss_pred             CCEEEecCCCcCCCcchHHHHHHHHHh----cCCcccccccCCCCCCCccCC---CCc----Eeeee
Confidence            6789999999999999999976 9863    222232      235677865   455    55555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.61  E-value=0.01  Score=47.39  Aligned_cols=42  Identities=36%  Similarity=0.767  Sum_probs=36.2

Q ss_pred             CCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         89 MSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        89 ~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      +.||..|+|.      ...++|++.+++++|..+|...+.|+|++|.+
T Consensus         1 ~~CP~~C~C~------~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i   42 (170)
T 3g39_A            1 MACPSQCSCS------GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQI   42 (170)
T ss_dssp             -CCC-CCEEE------TTEEECTTSCCSSCCSCCCTTCSEEECCSSCC
T ss_pred             CcCcCcCCcC------CCEEEeCCCCcCccCccCCCCCcEEEcCCCcC
Confidence            4699999996      46799999999999999999999999999976

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.28  E-value=0.018  Score=46.30  Aligned_cols=44  Identities=27%  Similarity=0.720  Sum_probs=38.9

Q ss_pred             CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCCC
Q psy11469         88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQ  137 (267)
Q Consensus        88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~D  137 (267)
                      .+.||..|+|.      ...++|+..+++++|..+|...+.|+|++|.+.
T Consensus         3 ~~~CP~~C~C~------~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~   46 (174)
T 2r9u_A            3 SAGCPSQCSCD------QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQIT   46 (174)
T ss_dssp             CCSSCTTSEEC------SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCC
T ss_pred             CCCCCCCCEEC------CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCcc
Confidence            45799999996      468999999999999999999999999999763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=95.10  E-value=0.019  Score=47.76  Aligned_cols=42  Identities=36%  Similarity=0.757  Sum_probs=37.4

Q ss_pred             CCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         89 MSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        89 ~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ..||..|.|.      ...++|+..+++++|..+|...+.|++++|.+
T Consensus         3 ~~CP~~C~C~------~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i   44 (220)
T 2v9t_B            3 LHCPAACTCS------NNIVDCRGKGLTEIPTNLPETITEIRLEQNTI   44 (220)
T ss_dssp             CCSCTTSEEE------TTEEECTTSCCSSCCSSCCTTCCEEECCSSCC
T ss_pred             CCCCCCCEEC------CCEEEcCCCCcCcCCCccCcCCCEEECCCCcC
Confidence            4699999997      35799999999999999999999999999975

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=94.94  E-value=0.022  Score=46.53  Aligned_cols=42  Identities=38%  Similarity=0.812  Sum_probs=36.7

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQ  137 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~D  137 (267)
                      .||..|.|.      ...++|+..+++.+|..+|.+.+.|++++|.+.
T Consensus         3 ~CP~~C~C~------~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~   44 (193)
T 2wfh_A            3 RCPTECTCL------DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT   44 (193)
T ss_dssp             -CCTTCEEE------TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC
T ss_pred             CCCCCCEeC------CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc
Confidence            599999997      357999999999999999999999999999763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=94.84  E-value=0.016  Score=51.64  Aligned_cols=40  Identities=23%  Similarity=0.498  Sum_probs=35.2

Q ss_pred             CCcc-ceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         91 CPFN-CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        91 cp~~-c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ||.. |+|.      .+.|+|+..++++||..+|.++++|+|++|.+
T Consensus         2 Cp~~~C~C~------~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i   42 (350)
T 4ay9_X            2 CHHRICHCS------NRVFLCQESKVTEIPSDLPRNAIELRFVLTKL   42 (350)
T ss_dssp             CCCSSSEEE------TTEEEEESTTCCSCCTTCCTTCSEEEEESCCC
T ss_pred             CCCCccEee------CCEEEecCCCCCccCcCcCCCCCEEEccCCcC
Confidence            7754 9997      36799999999999999999999999999965

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=94.64  E-value=0.03  Score=45.46  Aligned_cols=41  Identities=29%  Similarity=0.719  Sum_probs=36.7

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .||..|.|.      ...++|+..+++++|..+|...+.|++++|.+
T Consensus         1 ~CP~~C~C~------~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i   41 (192)
T 1w8a_A            1 DCPAMCHCE------GTTVDCTGRGLKEIPRDIPLHTTELLLNDNEL   41 (192)
T ss_dssp             CCCTTSEEE------TTEEECTTSCCSSCCSCCCTTCSEEECCSCCC
T ss_pred             CcCCCCEEC------CCEEEcCCCCcCcCccCCCCCCCEEECCCCcC
Confidence            489999997      36799999999999999999999999999976

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=94.47  E-value=0.033  Score=49.80  Aligned_cols=43  Identities=35%  Similarity=0.666  Sum_probs=38.5

Q ss_pred             CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ...||..|.|.      ...++|+..+++.+|..+|...+.|+|++|.+
T Consensus         9 ~~~Cp~~C~C~------~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l   51 (361)
T 2xot_A            9 VVSCPANCLCA------SNILSCSKQQLPNVPQSLPSYTALLDLSHNNL   51 (361)
T ss_dssp             CTTCCTTCEEE------TTEEECCSSCCSSCCSSCCTTCSEEECCSSCC
T ss_pred             CCCCCCCCEEC------CCEEEeCCCCcCccCccCCCCCCEEECCCCCC
Confidence            46799999997      36899999999999999999999999999975

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=94.46  E-value=0.034  Score=46.18  Aligned_cols=44  Identities=30%  Similarity=0.720  Sum_probs=37.8

Q ss_pred             CCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCCCc
Q psy11469         89 MSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPCQA  138 (267)
Q Consensus        89 ~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~Da  138 (267)
                      ..||..|+|.      ...++|+..+++++|..+|...+.|++++|.+..
T Consensus         3 ~~CP~~C~C~------~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~   46 (220)
T 2v70_A            3 LACPEKCRCE------GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTV   46 (220)
T ss_dssp             -CCCTTCEEE------TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE
T ss_pred             CCCCCCCEEC------CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCc
Confidence            4699999997      2479999999999999999999999999997643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=93.85  E-value=0.061  Score=46.00  Aligned_cols=44  Identities=27%  Similarity=0.689  Sum_probs=37.8

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .||..|.|+...   ...++|++.+++.+|..+|...+.|++++|.+
T Consensus         1 ~CP~~C~C~~~~---~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i   44 (285)
T 1ozn_A            1 PCPGACVCYNEP---KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRI   44 (285)
T ss_dssp             CCCTTCEEECSS---SCEEECCSSCCSSCCTTCCTTCSEEECTTSCC
T ss_pred             CcCCCceECCCC---CeEEEcCcCCcccCCcCCCCCceEEEeeCCcC
Confidence            489999998532   25799999999999999999999999999865

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=93.83  E-value=0.093  Score=42.99  Aligned_cols=60  Identities=17%  Similarity=0.175  Sum_probs=49.2

Q ss_pred             cCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHHHHHHHHhhcCCCcEEEEEcC
Q psy11469        171 HRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLP  234 (267)
Q Consensus       171 ~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~  234 (267)
                      .||-..++..+-..+.+-|.+|+.+|+++|++...+.|.+.|++.|..    +.+.+||.|-.+
T Consensus        59 vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~----~~~~PII~Vy~~  118 (189)
T 3hyn_A           59 VRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG----TKGLPVIVIYPD  118 (189)
T ss_dssp             TTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT----TTCCCEEEEETT
T ss_pred             ccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH----hcCCcEEEEECC
Confidence            355555333788999999999999999999999999999999999973    246788887766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=92.48  E-value=0.12  Score=40.92  Aligned_cols=40  Identities=28%  Similarity=0.634  Sum_probs=35.3

Q ss_pred             CCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        91 cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ||..|+|.      ...++|+..+++.+|..++...+.|++++|.+
T Consensus         1 Cp~~C~C~------~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l   40 (177)
T 2o6r_A            1 CPSRCSCS------GTEIRCNSKGLTSVPTGIPSSATRLELESNKL   40 (177)
T ss_dssp             CCTTCEEE------TTEEECCSSCCSSCCTTCCTTCSEEECCSSCC
T ss_pred             CcCCCEeC------CCEEEecCCCCccCCCCCCCCCcEEEeCCCcc
Confidence            78999996      35688999999999999999999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=92.42  E-value=0.11  Score=47.75  Aligned_cols=43  Identities=23%  Similarity=0.502  Sum_probs=37.4

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .||..|.|...  |  ..++|...+++.+|..+|...+.|+|++|.+
T Consensus         2 ~Cp~~C~C~~~--~--~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l   44 (477)
T 2id5_A            2 GCPPRCECSAQ--D--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRI   44 (477)
T ss_dssp             CCSTTCEEETT--T--TEEECCSCCCSSCCSCCCTTCSEEECCSSCC
T ss_pred             cccCCCeECCC--C--CEEEeCCCCcCcCCCCCCCCCcEEECCCCcc
Confidence            59999999842  2  4799999999999999999999999999965

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=92.03  E-value=0.14  Score=41.60  Aligned_cols=40  Identities=28%  Similarity=0.601  Sum_probs=35.3

Q ss_pred             CCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        91 cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ||..|.|.    |  ..++|...+++.+|..+|...+.|++++|.+
T Consensus         1 Cp~~C~C~----~--~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l   40 (208)
T 2o6s_A            1 CPSRCSCS----G--TTVECYSQGRTSVPTGIPAQTTYLDLETNSL   40 (208)
T ss_dssp             CCTTCEEE----T--TEEECCSSCCSSCCSCCCTTCSEEECCSSCC
T ss_pred             CcCCCEEC----C--CEEEecCCCccCCCCCCCCCCcEEEcCCCcc
Confidence            78999996    2  5789999999999999999999999999865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=91.93  E-value=0.13  Score=44.25  Aligned_cols=40  Identities=28%  Similarity=0.610  Sum_probs=35.3

Q ss_pred             CCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        91 cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ||..|.|.    |  ..++|...+++.+|..+|...+.|++++|.+
T Consensus         1 CP~~C~C~----~--~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l   40 (306)
T 2z66_A            1 CPSRCSCS----G--TEIRCNSKGLTSVPTGIPSSATRLELESNKL   40 (306)
T ss_dssp             CCTTCEEE----T--TEEECCSSCCSSCCSCCCTTCCEEECCSSCC
T ss_pred             CcCCCeeC----C--CEEEcCCCCcccCCCCCCCCCCEEECCCCcc
Confidence            78999996    2  4689999999999999999999999999865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=90.98  E-value=0.18  Score=46.05  Aligned_cols=45  Identities=22%  Similarity=0.471  Sum_probs=38.1

Q ss_pred             CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ...||..|.|...    ...|+|...+++++|..+|.+.+.|+|++|.+
T Consensus        32 ~~~Cp~~C~C~~~----~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i   76 (440)
T 3zyj_A           32 AQTCPSVCSCSNQ----FSKVICVRKNLREVPDGISTNTRLLNLHENQI   76 (440)
T ss_dssp             -CCCCSSSEECTT----SCEEECCSCCCSSCCSCCCTTCSEEECCSCCC
T ss_pred             cccCCCCCEeCCC----CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcC
Confidence            4569999999732    35789999999999999999999999999965

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=90.83  E-value=0.19  Score=47.26  Aligned_cols=40  Identities=15%  Similarity=0.280  Sum_probs=33.3

Q ss_pred             ccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         93 FNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        93 ~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ..|.|...    ...++|+.+++++||..+|.+++.|+|++|.+
T Consensus        25 ~~c~~~~~----~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i   64 (635)
T 4g8a_A           25 EPCVEVVP----NITYQCMELNFYKIPDNLPFSTKNLDLSFNPL   64 (635)
T ss_dssp             CCSEEEET----TTEEECTTSCCSSCCSSSCTTCCEEECTTSCC
T ss_pred             CCccccCC----CCEEECCCCCcCccCCCCCcCCCEEEeeCCCC
Confidence            35666632    35789999999999999999999999999965

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=90.64  E-value=0.21  Score=45.81  Aligned_cols=45  Identities=24%  Similarity=0.510  Sum_probs=38.0

Q ss_pred             CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ...||..|.|...    ...++|.+.+++.+|..+|.+.+.|+|++|.+
T Consensus        43 ~~~Cp~~C~C~~~----~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i   87 (452)
T 3zyi_A           43 PQNCPSVCSCSNQ----FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNI   87 (452)
T ss_dssp             -CCCCTTSEECSS----SCEEECCSSCCSSCCSCCCTTCSEEECCSSCC
T ss_pred             cCCCCCCCEECCC----CcEEEECCCCcCccCCCCCCCccEEECcCCcC
Confidence            4569999999732    35789999999999999999999999999965

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=90.39  E-value=1.1  Score=35.77  Aligned_cols=83  Identities=12%  Similarity=0.002  Sum_probs=55.7

Q ss_pred             cCCCC-HHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecC--CcccccCcHHHHHHHHH
Q psy11469        142 YSLKD-EPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSR--AFIYGDWSRPEFKSALN  218 (267)
Q Consensus       142 y~~~D-~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~--~fl~s~w~~~e~~~a~~  218 (267)
                      |+..+ .+|.. .+...|++  .|+.+++...+-.+....+.++=.++|++|+-+|++++|  .--.+.=..+|+-.|..
T Consensus        20 F~~~e~~~~~~-~l~~~l~~--~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A   96 (161)
T 2f62_A           20 FNPDMGASYYN-KVRELLKK--ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA   96 (161)
T ss_dssp             GSTTTTHHHHH-HHHHHHHT--TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHHH--CCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH
Confidence            47777 88887 79999988  489887755433222214555557899999999999996  22223336677777765


Q ss_pred             HHhhcCCCcEEEEE
Q psy11469        219 GSLMRHRKPLFIIM  232 (267)
Q Consensus       219 ~~~~~~~~~lI~v~  232 (267)
                           .+++||.+.
T Consensus        97 -----lgKPVi~l~  105 (161)
T 2f62_A           97 -----LNKMVLTFT  105 (161)
T ss_dssp             -----TTCEEEEEC
T ss_pred             -----CCCEEEEEE
Confidence                 355665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=86.79  E-value=0.51  Score=40.03  Aligned_cols=25  Identities=24%  Similarity=0.763  Sum_probs=21.9

Q ss_pred             CCeEEecCCCcccccC-chHHHHHHh
Q psy11469          1 MPKFFLGENPFECDCK-MEWLQRAHE   25 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~-l~wl~~w~~   25 (267)
                      |++|+|++|||.|+|. +.||..|..
T Consensus       207 L~~L~l~~N~~~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          207 LQYIWLHDNPWDCTCPGIRYLSEWIN  232 (272)
T ss_dssp             CCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             CCEEEccCCCccccCcHHHHHHHHHH
Confidence            6889999999999995 788888875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=86.50  E-value=0.6  Score=40.64  Aligned_cols=43  Identities=30%  Similarity=0.638  Sum_probs=36.9

Q ss_pred             CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ...||..|.|.      ...++|+..+++.+|..++...+.|++++|.+
T Consensus        24 ~~~cp~~c~c~------l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i   66 (332)
T 2ft3_A           24 SAMCPFGCHCH------LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDI   66 (332)
T ss_dssp             -CCCCSSCEEE------TTEEECCSSCCSSCCSCCCTTCCEEECCSSCC
T ss_pred             cCCCCCCCccc------CCEEECCCCCccccCCCCCCCCeEEECCCCcC
Confidence            34589999997      56799999999999999998999999999865

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=85.62  E-value=0.72  Score=40.04  Aligned_cols=43  Identities=30%  Similarity=0.662  Sum_probs=37.3

Q ss_pred             CCCCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         88 RMSCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        88 ~~~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      ...||..|.|.      ...++|+..+++.+|..+|+..+.|++++|.+
T Consensus        22 ~~~cp~~c~c~------l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i   64 (330)
T 1xku_A           22 GPVCPFRCQCH------LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKI   64 (330)
T ss_dssp             CCCCCTTCEEE------TTEEECTTSCCCSCCCSCCTTCCEEECCSSCC
T ss_pred             cCCCCCCCcCC------CeEEEecCCCccccCccCCCCCeEEECCCCcC
Confidence            34689999997      56899999999999999999999999999865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=84.37  E-value=0.57  Score=41.01  Aligned_cols=39  Identities=18%  Similarity=0.487  Sum_probs=31.6

Q ss_pred             CCccc-eeeecCCCceeEEEcCcc-cccccCCCCCCC--cceecccC-CCC
Q psy11469         91 CPFNC-TCYNDQAWTTNIVDCSNS-QYNHVPLFVPMD--ATTIYLDD-TPC  136 (267)
Q Consensus        91 cp~~c-~c~~~~~w~~~~v~C~~~-gl~~ip~~~p~~--~~~L~L~~-n~~  136 (267)
                      ||..| .|.      ...++|++. +++++|. ++..  .+.|+|++ |.+
T Consensus         1 cp~~c~~C~------~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l   44 (347)
T 2ifg_A            1 CPDACCPHG------SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHL   44 (347)
T ss_dssp             CCSSSCCSS------SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC
T ss_pred             CCCcCcccc------CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC
Confidence            78888 885      246799999 9999999 8854  78899986 865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=84.28  E-value=0.63  Score=38.42  Aligned_cols=41  Identities=22%  Similarity=0.391  Sum_probs=32.9

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .||..|.|..   |....|+|..  ++++|. +|...+.|++++|.+
T Consensus         3 ~cp~~C~C~~---~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l   43 (239)
T 2xwt_C            3 CSSPPCECHQ---EEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHL   43 (239)
T ss_dssp             CCSSSCSEEE---CSTTEEEECS--CSSCCC-CCTTCCEEEEESCCC
T ss_pred             CCCCCCeeCC---CCcceeEccC--ccccCC-CCCcccEEEEeCCcc
Confidence            4889999974   3356788986  889999 888888999988865

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=84.28  E-value=2.4  Score=33.87  Aligned_cols=94  Identities=15%  Similarity=0.152  Sum_probs=62.8

Q ss_pred             eecccCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCC----Cc---ccHHHHHHHHHHhcCEEEEEec
Q psy11469        128 TIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNP----NL---ISTADFVTNSIERSEKVIMVLS  200 (267)
Q Consensus       128 ~L~L~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~----G~---~~~~~~i~~~i~~Sr~~I~VlS  200 (267)
                      ++||-|.+      |+..+.+|.. .+...|++..+|+.++...++-.+    +.   ..+.+.=.++|++|+-+|+++.
T Consensus         6 kIYLAGP~------Fs~~q~~~~~-~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld   78 (162)
T 3ehd_A            6 KIYFAGPL------FSQADLRYNA-YLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD   78 (162)
T ss_dssp             EEEEESCC------SSHHHHHHHH-HHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             EEEEECCC------CCHHHHHHHH-HHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC
Confidence            46666655      3666667775 688999875468999887776532    21   0355555668999999999995


Q ss_pred             CCcccccCcHHHHHHHHHHHhhcCCCcEEEEEcC
Q psy11469        201 RAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLP  234 (267)
Q Consensus       201 ~~fl~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~  234 (267)
                      .. -.+....+|+-.|..     .+++|+.+..+
T Consensus        79 g~-~~D~Gt~~EiG~A~a-----~gkPVi~~~~D  106 (162)
T 3ehd_A           79 GP-TIDAGVASEIGVAYA-----KGIPVVALYTD  106 (162)
T ss_dssp             SS-SCCHHHHHHHHHHHH-----TTCCEEEECCC
T ss_pred             CC-CCCCCHHHHHHHHHH-----CCCEEEEEEcC
Confidence            32 245567788888875     34566655443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=83.47  E-value=0.96  Score=42.64  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .|+..|.|+..    ...++|+..+++++|..+|...+.|++++|.+
T Consensus         3 ~~~~~C~~~~~----~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i   45 (606)
T 3t6q_A            3 SSDQKCIEKEV----NKTYNCENLGLNEIPGTLPNSTECLEFSFNVL   45 (606)
T ss_dssp             ---CCCEEEET----TTEEECTTSCCSSCCTTSCTTCCEEECTTCCC
T ss_pred             cccCceecccC----CceEECCCCCcccCcCCCCCcCcEEEccCCcc
Confidence            46778888742    34799999999999999999999999999964

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=82.43  E-value=0.97  Score=40.89  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .||..|.|.      ...++|.+.+++.+|. +|...+.|++++|.+
T Consensus         3 p~~~~c~~~------~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i   42 (455)
T 3v47_A            3 PGTSECSVI------GYNAICINRGLHQVPE-LPAHVNYVDLSLNSI   42 (455)
T ss_dssp             ----CCEEE------TTEEECCSSCCSSCCC-CCTTCCEEECCSSCC
T ss_pred             CccceeEEE------ccccCcCCCCcccCCC-CCCccCEEEecCCcc
Confidence            377788887      4578899999999999 899999999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	6e-11
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 6e-11
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A+V YS +D  +V+ +++  L   +P  KL +H RD         D + +SIE+S K + 
Sbjct: 8   AFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHG-KWIIDNIIDSIEKSHKTVF 66

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQ 255
           VLS  F+  +W + E   +       +     +I+L P       +P     L  ++ 
Sbjct: 67  VLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKA--IPQRFCKLRKIMN 122

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 138 AYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIM 197
           A++ YS  D  +VK  LLP L  +   +++ +H R+  P   S  + +   IE+S K I 
Sbjct: 15  AFISYSGHDSFWVKNELLPNL--EKEGMQICLHERNFVPG-KSIVENIITCIEKSYKSIF 71

Query: 198 VLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDN 257
           VLS  F+  +W   E   A +         L +I+L P       +P S + L  L+   
Sbjct: 72  VLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQ--YSIPSSYHKLKSLMARR 129

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 91  CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDD 133
           CP  C CYN+   T     C       VP+ +P  +  I+L  
Sbjct: 2   CPGACVCYNEPKVT---TSCPQQGLQAVPVGIPAASQRIFLHG 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.96
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.36
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.12
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.3
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.46
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	91.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	91.43
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	86.99
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	86.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	86.69

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-31  Score=212.05  Aligned_cols=121  Identities=25%  Similarity=0.422  Sum_probs=114.1

Q ss_pred             CCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHHH
Q psy11469        135 PCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEFK  214 (267)
Q Consensus       135 ~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~~  214 (267)
                      .|||||||+++|++||.+.|.+.||+..+|+++|+++||+.||. .+.++|.++|++|+++|+|+||+|++|.||+.|++
T Consensus         5 ~YDvFiSys~~D~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~-~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~~   83 (149)
T d1fyxa_           5 CYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGK-WIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELD   83 (149)
T ss_dssp             CEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSS-CHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSC
T ss_pred             EEEEEEECchhhHHHHHHHHHHHHHhcCCCceEEEecccccccc-hHHHHHHHHHHhCCEEEEEEcCccccccchHHHHH
Confidence            69999999999999999889999998767999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhcc
Q psy11469        215 SALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQ  258 (267)
Q Consensus       215 ~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~~  258 (267)
                      .|++++++++.+++|||++++++...  +|..+..|+.+++.+.
T Consensus        84 ~a~~~~~~~~~~~iIpV~l~~~~~~~--~~~~~~~l~~~l~~~~  125 (149)
T d1fyxa_          84 FSHFRLFDENNDAAILILLEPIEKKA--IPQRFCKLRKIMNTKT  125 (149)
T ss_dssp             CSCCTTCGGGTTCCEEEESSCCCTTT--SCSSCHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCceEEEEEeccCchhh--cchhhHHHHHHhccCC
Confidence            99999999889999999999999888  8888888988887753

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.3e-30  Score=208.94  Aligned_cols=120  Identities=28%  Similarity=0.444  Sum_probs=112.7

Q ss_pred             CCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCCcccccCcHHHH
Q psy11469        134 TPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRAFIYGDWSRPEF  213 (267)
Q Consensus       134 n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~fl~s~w~~~e~  213 (267)
                      ..|||||||+++|++||.++|.+.||+  .|+++|+++||+.||. ++.++|.++|++|+++|+|+|++|++|.||++|+
T Consensus        11 ~~yDvFisys~~D~~~v~~~L~~~Le~--~g~~v~~d~~d~~~G~-~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~   87 (161)
T d1fyva_          11 LQFHAFISYSGHDSFWVKNELLPNLEK--EGMQICLHERNFVPGK-SIVENIITCIEKSYKSIFVLSPNFVQSEWCHYEL   87 (161)
T ss_dssp             CCEEEEEECCGGGHHHHHHTHHHHHHT--TTCCEECTTTTCCTTS-CHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHH
T ss_pred             CeeEEEEecChhHHHHHHHHHHHHHHh--CCCcceEecccccccc-ccHHHHHHHHHhCCEEEEEecCccccChHHHHHH
Confidence            379999999999999998889999998  4999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCcEEEEEcCCCCCccccCCccHHHHHHHhhhcc
Q psy11469        214 KSALNGSLMRHRKPLFIIMLPPHSNILVIMPMSIYHLSVLLQDNQ  258 (267)
Q Consensus       214 ~~a~~~~~~~~~~~lI~v~~~~i~~~~~~~p~~~~~l~~l~~~~~  258 (267)
                      +.|++++++++++++|||++++++...  +|..+..|+.+++.++
T Consensus        88 ~~a~~~~~~~~~~~lIpV~l~~~~~~~--~~~~~~~L~~~~~~~~  130 (161)
T d1fyva_          88 YFAHHNLFHEGSNSLILILLEPIPQYS--IPSSYHKLKSLMARRT  130 (161)
T ss_dssp             HTTSCCCSCSSCSSEEEEESSCCCGGG--SCTTCHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCceeEEEEecCchhh--cchhHHHHHHHHhcCC
Confidence            999999999889999999999999887  8888889998877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.3e-08  Score=78.83  Aligned_cols=46  Identities=26%  Similarity=0.505  Sum_probs=37.1

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-ccc
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENL   51 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~   51 (267)
                      |++|+|++|||.|||++.||.+|+..    ... ....++++|.+|.. +|+
T Consensus       105 l~~L~L~~Np~~C~C~~~~l~~~~~~----~~~-~~~~~~~~C~~p~~l~~~  151 (156)
T d2ifga3         105 LQELVLSGNPLHCSCALRWLQRWEEE----GLG-GVPEQKLQCHGQGPLAHM  151 (156)
T ss_dssp             CCEEECCSSCCCCCGGGHHHHHHHHT----TCS-SCGGGCCCCSSSSCSSCC
T ss_pred             ccccccCCCcccCCchHHHHHHHHHh----ccC-ccCcCCcEECcChHHCcC
Confidence            57899999999999999999999963    111 23347899999998 665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.36  E-value=1e-07  Score=76.99  Aligned_cols=59  Identities=22%  Similarity=0.484  Sum_probs=50.0

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhhccCCCCcccccCCCceecCCcc-cccccccccccccCCceeccCC
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEIHKDGIYPEIADLESLYCRMVYE-ENLITYDNIFIADSSKFLCDYE   70 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~~~~~~~~~~~~~~~~~C~~P~~-~g~l~~~~l~~~~~~~~~C~~~   70 (267)
                      |++|+|++|||.|+|++.||..|+...       ....+.++|.+|.. +|.    .+.+++.+++.|...
T Consensus       128 L~~l~L~~N~~~~~~~~~~~~~~l~~~-------~l~~~~~~c~~p~~l~~~----~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         128 LTSLNLASNPFNCNCHLAWFAEWLRKK-------SLNGGAARCGAPSKVRDV----QIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CCEEECTTCCBCCSGGGHHHHHHHHHH-------CCSGGGCBBCSSTTTTTS----BGGGSCTTTCCCCCC
T ss_pred             cccccccccccccccchHHHhhhhhhh-------cccCCCeEeCCChhhcCC----EeeecCHhhCcCCCC
Confidence            689999999999999999999999631       12347899999999 776    999999999999754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.2e-07  Score=75.34  Aligned_cols=26  Identities=31%  Similarity=0.726  Sum_probs=24.2

Q ss_pred             CCeEEecCCCcccccCchHHHHHHhh
Q psy11469          1 MPKFFLGENPFECDCKMEWLQRAHEI   26 (267)
Q Consensus         1 ~~~l~L~~NP~~CdC~l~wl~~w~~~   26 (267)
                      |+.|+|+||||.|||++.||..|+..
T Consensus       197 L~~L~L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         197 LPFAFLHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             CSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCcchHHHHHHHHh
Confidence            68899999999999999999999963

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.30  E-value=7.9e-05  Score=59.28  Aligned_cols=41  Identities=29%  Similarity=0.719  Sum_probs=37.4

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .||.+|+|.      ...|+|+..+++.||+.+|.++++|+|++|.+
T Consensus         1 ~CP~~C~C~------~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i   41 (192)
T d1w8aa_           1 DCPAMCHCE------GTTVDCTGRGLKEIPRDIPLHTTELLLNDNEL   41 (192)
T ss_dssp             CCCTTSEEE------TTEEECTTSCCSSCCSCCCTTCSEEECCSCCC
T ss_pred             CcCCCCEEc------CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCC
Confidence            389999997      35799999999999999999999999999976

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0013  Score=54.95  Aligned_cols=44  Identities=27%  Similarity=0.693  Sum_probs=37.7

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .||..|.|+.. .  ...|.|++.+++++|..+|.++++|+|++|.+
T Consensus         1 ~cp~~C~C~~~-~--~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i   44 (284)
T d1ozna_           1 PCPGACVCYNE-P--KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRI   44 (284)
T ss_dssp             CCCTTCEEECS-S--SCEEECCSSCCSSCCTTCCTTCSEEECTTSCC
T ss_pred             CcCCCCEEcCC-C--CeEEEcCCCCCCccCCCCCCCCCEEECcCCcC
Confidence            48999999853 2  25688999999999999999999999999965

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.31  E-value=0.0015  Score=54.89  Aligned_cols=41  Identities=32%  Similarity=0.722  Sum_probs=37.5

Q ss_pred             CCCccceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         90 SCPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        90 ~cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      +||..|.|.      ...++|++++++++|..+|++.+.|++++|.+
T Consensus         3 ~~p~~c~c~------~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i   43 (305)
T d1xkua_           3 VCPFRCQCH------LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKI   43 (305)
T ss_dssp             CCCTTCEEE------TTEEECTTSCCCSCCCSCCTTCCEEECCSSCC
T ss_pred             CCCCCCEec------CCEEEecCCCCCccCCCCCCCCCEEECcCCcC
Confidence            699999997      57799999999999999999999999999965

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.051  Score=43.22  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=32.4

Q ss_pred             cceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         94 NCTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        94 ~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      .|+|.      ...++|+..+++.+|..+|.+.++|++++|.+
T Consensus         5 ~C~C~------~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i   41 (242)
T d1xwdc1           5 ICHCS------NRVFLCQESKVTEIPSDLPRNAIELRFVLTKL   41 (242)
T ss_dssp             SEEEC------SSEEEEESCSCSSCCSCSCSCCSEEEEESCCC
T ss_pred             cCCCc------CCEEEEeCCCCCCcCCCCCCCCCEEECcCCcC
Confidence            47886      46899999999999999999999999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.083  Score=42.93  Aligned_cols=40  Identities=20%  Similarity=0.364  Sum_probs=32.1

Q ss_pred             ceeeecCCCceeEEEcCcccccccCCCCCCCcceecccCCCC
Q psy11469         95 CTCYNDQAWTTNIVDCSNSQYNHVPLFVPMDATTIYLDDTPC  136 (267)
Q Consensus        95 c~c~~~~~w~~~~v~C~~~gl~~ip~~~p~~~~~L~L~~n~~  136 (267)
                      |.|....  ....|+|++.+++++|..+|.+.+.|+|++|.+
T Consensus         4 C~~~~~~--~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i   43 (266)
T d1p9ag_           4 CEVSKVA--SHLEVNCDKRNLTALPPDLPKDTTILHLSENLL   43 (266)
T ss_dssp             SEEECST--TCCEEECTTSCCSSCCSCCCTTCCEEECTTSCC
T ss_pred             cEEcccC--CCeEEEccCCCCCeeCcCcCcCCCEEECcCCcC
Confidence            5665321  134689999999999999999999999999965

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.99  E-value=1.3  Score=33.38  Aligned_cols=97  Identities=13%  Similarity=0.009  Sum_probs=61.9

Q ss_pred             cceecccCCCCCceeecCCCCHHHHHHhhhhccCCCCCceEEEEecCCCCCC---------c---c----cHHHHHHHHH
Q psy11469        126 ATTIYLDDTPCQAYVIYSLKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPN---------L---I----STADFVTNSI  189 (267)
Q Consensus       126 ~~~L~L~~n~~DaFIsy~~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G---------~---~----~~~~~i~~~i  189 (267)
                      ++++||.|-++      ++.+.+|+. .+...|++...++.++...+|-..+         .   .    .+.+.=.++|
T Consensus         7 ~~kIYLAgP~F------~~~~~~~~~-~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i   79 (167)
T d1s2da_           7 TGKIYLGSPFY------SDAQRERAA-KAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGI   79 (167)
T ss_dssp             CEEEEEECCCS------SHHHHHHHH-HHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CceEEEECCCC------CHHHHHHHH-HHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHH
Confidence            35788888764      566778886 7899998853335776555442111         0   0    1233334689


Q ss_pred             HhcCEEEEEecCCcccccCcHHHHHHHHHHHhhcCCCcEEEEEcCC
Q psy11469        190 ERSEKVIMVLSRAFIYGDWSRPEFKSALNGSLMRHRKPLFIIMLPP  235 (267)
Q Consensus       190 ~~Sr~~I~VlS~~fl~s~w~~~e~~~a~~~~~~~~~~~lI~v~~~~  235 (267)
                      ++|+-+|+++......+ =..+|+-.|..     .+++||.+--+.
T Consensus        80 ~~sD~vIA~ldg~~~D~-GTa~EiG~A~a-----~gKPvi~~~~d~  119 (167)
T d1s2da_          80 SNATCGVFLYDMDQLDD-GSAFEIGFMRA-----MHKPVILVPFTE  119 (167)
T ss_dssp             HHCSEEEEEEESSSCCH-HHHHHHHHHHH-----TTCCEEEEEECS
T ss_pred             HHCCEEEEEeCCCCCCc-cHHHHHHHHHH-----CCCeEEEEecCC
Confidence            99999999997765433 35677777765     357787776543

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.82  E-value=1.6  Score=32.57  Aligned_cols=80  Identities=13%  Similarity=-0.044  Sum_probs=54.6

Q ss_pred             CCCHHHHHHhhhhccCCCCCceEEEEecCCCCCCcccHHHHHHHHHHhcCEEEEEecCC--cccccCcHHHHHHHHHHHh
Q psy11469        144 LKDEPFVKQILLPGLAFKDPAVKLRVHHRDLNPNLISTADFVTNSIERSEKVIMVLSRA--FIYGDWSRPEFKSALNGSL  221 (267)
Q Consensus       144 ~~D~~~v~~~L~~~Le~~~~g~~v~~~~rD~~~G~~~~~~~i~~~i~~Sr~~I~VlS~~--fl~s~w~~~e~~~a~~~~~  221 (267)
                      +.+.+++. .+...|++  .|+.++....+-.+....+.++-.+.|++|+-+|++|++-  --.+.=..+|+-.|...  
T Consensus        15 d~~~~~~~-~i~~~l~~--~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al--   89 (152)
T d2f62a1          15 DMGASYYN-KVRELLKK--ENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL--   89 (152)
T ss_dssp             TTTHHHHH-HHHHHHHT--TTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT--
T ss_pred             HHHHHHHH-HHHHHHHH--CCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC--
Confidence            44567776 68888988  5999876554433332256777778999999999999852  22233467888888753  


Q ss_pred             hcCCCcEEEE
Q psy11469        222 MRHRKPLFII  231 (267)
Q Consensus       222 ~~~~~~lI~v  231 (267)
                         +++||..
T Consensus        90 ---gKPVi~~   96 (152)
T d2f62a1          90 ---NKMVLTF   96 (152)
T ss_dssp             ---TCEEEEE
T ss_pred             ---CCeEEEE
Confidence               5666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.2  Score=37.55  Aligned_cols=40  Identities=18%  Similarity=0.429  Sum_probs=31.6

Q ss_pred             CCccceeeecCCCceeEEEcCcccccccCCCCC--CCcceecccCCC
Q psy11469         91 CPFNCTCYNDQAWTTNIVDCSNSQYNHVPLFVP--MDATTIYLDDTP  135 (267)
Q Consensus        91 cp~~c~c~~~~~w~~~~v~C~~~gl~~ip~~~p--~~~~~L~L~~n~  135 (267)
                      ||..|.|..     ...++|.+.++.++|+.+|  .+.++|++++|.
T Consensus         1 CP~~C~c~~-----~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~   42 (156)
T d2ifga3           1 CPDACCPHG-----SSGLRCTRDGALDSLHHLPGAENLTELYIENQQ   42 (156)
T ss_dssp             CCSSSCCSS-----SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCS
T ss_pred             CcCCCCcCC-----CCeEEecCCCCccCcccccCccccCeeecCCCc
Confidence            788888873     2358999999999999988  466788887663