Psyllid ID: psy11761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSGRVVDTPNQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHcccccccccccccccEcccccccEEEccccccEEccHHHHHHHcHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEcccccHHHEHEEEccccHHEEHEEEEccccccccccHccccEccccHHHHHHHHcccccccccccccccccHccccEccccHHHHHccc
Coil and Loop (DISEMBL)
mftqtpnlvlFSQQTLLCihgndnaykchqcqrLIFLsanagvhkceycHKVFdqqssllshncpqmkprpykcdtceksftnsqnlnthqlihsgirpfkcttcdksfvnqinptsthtptytksnlaqhscmnshfpkpyqcdrcsqffgdrmnlishhchkhkqsclpfisrlfgfddgdkvakfsgrvvdtpnq
Flexible Loop (DISEMBL)
mftqtpnlvLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKfsgrvvdtpnq
Low Complexity Region (SEG)
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSGRVVDTPNQ
Disordered region (IsUnstruct)
******NLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNC******PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH**TYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKF**********
Disordered Region (DISOPRED)
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSG*V******
Disordered Region (DISEMBL)
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSGRVVDTPNQ
Disordered Region (DISPRO)
****TPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFS*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSGRVVDTPNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q8N823	705	Zinc finger protein 611 O	yes	N/A	0.681	0.191	0.351	7e-20
A6NNF4	738	Zinc finger protein 726 O	no	N/A	0.676	0.181	0.339	6e-19
Q86V71	674	Zinc finger protein 429 O	no	N/A	0.722	0.212	0.316	2e-18
A8MTY0	619	Putative zinc finger prot	no	N/A	0.772	0.247	0.317	4e-18
Q6ZNA1	936	Zinc finger protein 836 O	no	N/A	0.767	0.162	0.324	6e-18
Q68DY1	528	Zinc finger protein 626 O	no	N/A	0.707	0.265	0.333	7e-18
Q03923	595	Zinc finger protein 85 OS	no	N/A	0.707	0.235	0.325	9e-18
Q8TF32	576	Zinc finger protein 431 O	no	N/A	0.712	0.244	0.323	1e-17
Q9HCG1	818	Zinc finger protein 160 O	no	N/A	0.646	0.156	0.342	1e-17
Q9NV72	465	Zinc finger protein 701 O	no	N/A	0.717	0.305	0.329	1e-17

>sp|Q8N823|ZN611_HUMAN Zinc finger protein 611 OS=Homo sapiens GN=ZNF611 PE=2 SV=2

 Score = 97.1 bits (240), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 438 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 497

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 498 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 548

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ HH
Sbjct: 549 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHH 585

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|A6NNF4|ZN726_HUMAN Zinc finger protein 726 OS=Homo sapiens GN=ZNF726 PE=2 SV=3

 Score = 94.0 bits (232), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 28/162 (17%)

Query: 11  FSQQTLL----CIHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCHKVFDQQ 56
           FSQ + L     IH  +  YKC +C +   LS+    HK          CE C K F+Q 
Sbjct: 490 FSQSSTLTAHKIIHTGEKPYKCEECGKAFILSSTLSKHKRIHTGEKPYKCEECGKTFNQS 549

Query: 57  SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT 116
           S+L +H       +PYKC+ C K+F  S NL+TH++IH+G +P+KC  C KSF+      
Sbjct: 550 SNLSTHKIIHTGEKPYKCEECGKAFNRSSNLSTHKIIHTGEKPYKCDECGKSFI------ 603

Query: 117 STHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLI 158
                    S L +H  +++   KPY+C+ C + F     L+
Sbjct: 604 -------WSSTLFKHKIIHTG-EKPYKCEECGKAFNHSQILL 637

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q86V71|ZN429_HUMAN Zinc finger protein 429 OS=Homo sapiens GN=ZNF429 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 40/183 (21%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCH 50
            F Q+ NL    +     IH  +  YKC +C +   LS+    HK          CE C 
Sbjct: 489 AFKQSSNLNSHKK-----IHSGEKPYKCEECGKAFILSSRLTQHKKIHTGEKPYKCEECG 543

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           K F++ S L  H       +PYKC  C+K+FT+S NL++H+ IHSG +P+KC  C K+F 
Sbjct: 544 KAFNRSSRLTQHKKIHTGEKPYKCKQCDKAFTHSSNLSSHKKIHSGEKPYKCEECGKAFN 603

Query: 111 NQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGD-----------RMNLIS 159
                          S L QH  +++   KPY+C+ C++ F             RM +++
Sbjct: 604 RS-------------SRLTQHKKIHTR-EKPYKCEECAKAFTRSSRLTQHKKIHRMGVVA 649

Query: 160 HHC 162
           H C
Sbjct: 650 HAC 652

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|A8MTY0|ZN724_HUMAN Putative zinc finger protein 724 OS=Homo sapiens GN=ZNF724P PE=5 SV=3

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 33/186 (17%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCH 50
            F Q+ NL    +     IH  D  YKC +C +   +S+    HK          CE C 
Sbjct: 318 AFNQSSNLTKHKR-----IHTGDKPYKCEECGKAFNVSSTLTQHKRIHTGEKPYKCEECG 372

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           K F+  S+L  H       +PYKC+ C K+F  S +L TH+ IH+G +P+KC  C K+F 
Sbjct: 373 KAFNVSSTLTQHKRIHTGEKPYKCEECGKAFNTSSHLTTHKRIHTGEKPYKCEECGKAF- 431

Query: 111 NQINPTSTHTPTYT----------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDR 154
           NQ +  +TH   +T                 SNL +H  +++   KPY+C+ C + F   
Sbjct: 432 NQFSQLTTHKIIHTGEKPYKCKECGKAFKRSSNLTEHRIIHT-GEKPYKCEECGKAFNLS 490

Query: 155 MNLISH 160
            +L +H
Sbjct: 491 SHLTTH 496

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZNA1|ZN836_HUMAN Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 33/185 (17%)

Query: 2   FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLI----------FLSANAGVHKCEYCHK 51
           F+Q+ NL +  +     IH  +  YKC++C +             +      ++C+ C K
Sbjct: 311 FSQSYNLAIHQR-----IHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGK 365

Query: 52  VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
           VF Q S+L++H       +PYKC+ C KSF+ S NL THQ +HSG +P+KC  C K+F  
Sbjct: 366 VFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKR 425

Query: 112 QINPTS-----THTPTYT----------KSNLAQHSCMNSH-FPKPYQCDRCSQFFGDRM 155
             + T+     T    YT          +S LA+H    SH   KPY+C+ C + F    
Sbjct: 426 SSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARH--QRSHTGEKPYKCNECGKVFSQTS 483

Query: 156 NLISH 160
           +L+ H
Sbjct: 484 HLVGH 488

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q68DY1|ZN626_HUMAN Zinc finger protein 626 OS=Homo sapiens GN=ZNF626 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 28/168 (16%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCHKVFDQQSSLLSHNCPQMK 68
           IH  D  YKC +C +    S+    HK          CE C K F + S L +H      
Sbjct: 334 IHTEDKPYKCEECGKAFKYSSTLTTHKRIHTGEKPYKCEECGKAFKRSSDLTTHKIIHTG 393

Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT---- 124
            +PYKC+ C K+F  S NL TH+ IH+G RP+KC  C K+F NQ +  +TH   +T    
Sbjct: 394 EKPYKCEECGKAFKYSSNLTTHKKIHTGERPYKCEECGKAF-NQSSILTTHRRIHTGEKF 452

Query: 125 ------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
                        SNL  H  +++   +PY+C+ C + F     L +H
Sbjct: 453 YKCEECGKAFKCSSNLTTHKKIHT-GERPYKCEECGKAFNQSSILTTH 499

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q03923|ZNF85_HUMAN Zinc finger protein 85 OS=Homo sapiens GN=ZNF85 PE=2 SV=3

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 29/169 (17%)

Query: 2   FTQTPNLVLFSQQTLLCIHGNDNAYKCHQC----QRLIFLSANAGVH------KCEYCHK 51
           F Q+ NL+   +     IH  +  YKC +C     R   L+ +  +H      KC+ C K
Sbjct: 239 FNQSSNLIKHKK-----IHTGEKPYKCEECGKTFNRFSTLTTHKIIHTGEKPYKCKECGK 293

Query: 52  VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
            F++ S+L +H       +PYKC+ C K+F  S NL TH++IH+G +P+KC  C K+F N
Sbjct: 294 AFNRSSTLTTHRKIHTGEKPYKCEECGKAFKQSSNLTTHKIIHTGEKPYKCKKCGKAF-N 352

Query: 112 QINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
           Q    +TH   +T               KPY+C++C + F    +L +H
Sbjct: 353 QSAHLTTHEVIHTGE-------------KPYKCEKCGKAFNHFSHLTTH 388

May be a transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q8TF32|ZN431_HUMAN Zinc finger protein 431 OS=Homo sapiens GN=ZNF431 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 26/167 (15%)

Query: 19  IHGNDNAYKCHQCQ----RLIFLSANAGVH------KCEYCHKVFDQQSSLLSHNCPQMK 68
           IH  +  YKC +C     R  +L+ +  +H      KCE C K F+  S+L  H      
Sbjct: 337 IHAGEKPYKCEECDKAFNRFSYLTKHKIIHTGEKSYKCEECGKGFNWSSTLTKHKRIHTG 396

Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN- 127
            +PYKC+ C K+F  S NL TH++IH+G +P+KC  C K+F N+    + H   +T    
Sbjct: 397 EKPYKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAF-NRSPQLTAHKIIHTGEKP 455

Query: 128 ---------LAQHSCMNSH-----FPKPYQCDRCSQFFGDRMNLISH 160
                     +Q S + +H       KPY+C+ C + F    NL  H
Sbjct: 456 YKCEECGKAFSQSSILTTHKRIHTGEKPYKCEECGKAFNRSSNLTKH 502

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9HCG1|ZN160_HUMAN Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 24/152 (15%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
           +H  +  YKC++C +   + +N   H          KC  C KVF Q S L +H      
Sbjct: 446 VHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTG 505

Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNL 128
            +PYKC+ C K+F+   +L THQ IHSG +P+KC  C KSF               KS+L
Sbjct: 506 EKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQ-------------KSHL 552

Query: 129 AQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
             H  ++S   KPY+C+ C + F     L  H
Sbjct: 553 RSHRGIHS-GEKPYKCNECGKVFAQTSQLARH 583

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9NV72|ZN701_HUMAN Zinc finger protein 701 OS=Homo sapiens GN=ZNF701 PE=2 SV=2

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 28/170 (16%)

Query: 18  CIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQM 67
            IH  +  YKC++C ++    +N   H          KCE C KVF ++S L  H     
Sbjct: 290 AIHTGEKPYKCNECGKVFNQQSNLARHHRVHTGEKPYKCEECDKVFSRKSHLERHRRIHT 349

Query: 68  KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT--- 124
             +PYKC  C+K+F    +L  H +IH+G +P+KC  C K+FV Q +    H   +T   
Sbjct: 350 GEKPYKCKVCDKAFRRDSHLAQHTVIHTGEKPYKCNECGKTFV-QNSSLVMHKVIHTGEK 408

Query: 125 -------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
                        KSNLA H  +++   KPY+C+ C + F  + NL  HH
Sbjct: 409 RYKCNECGKVFNHKSNLACHRRLHT-GEKPYKCNECGKVFNRKSNLERHH 457

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
358417009	1448	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.767	0.104	0.324	2e-18
296477336	699	TPA: zinc finger protein 107 [Bos taurus	0.772	0.218	0.322	3e-18
410054428	813	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.681	0.166	0.351	3e-18
21757193	705	unnamed protein product [Homo sapiens]	0.681	0.191	0.351	3e-18
239787080	705	zinc finger protein 611 isoform a [Homo	0.681	0.191	0.351	4e-18
239787086	636	zinc finger protein 611 isoform b [Homo	0.681	0.212	0.351	4e-18
50949560	598	hypothetical protein [Homo sapiens]	0.681	0.225	0.351	5e-18
296477354	691	TPA: zinc finger protein 347-like [Bos t	0.722	0.206	0.341	7e-18
344243619	629	Zinc finger protein 160 [Cricetulus gris	0.717	0.225	0.345	1e-17
327281828	876	PREDICTED: zinc finger protein 268-like	0.777	0.175	0.362	1e-17

>gi|358417009|ref|XP_002702020.2| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 91, partial [Bos taurus]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 33/185 (17%)

Query: 2   FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHK 51
           F++T NL +  +     +H  +  YKC  C +   +S+N  VH          KC+ C K
Sbjct: 755 FSRTGNLTVHRR-----VHTGEKPYKCDMCGKAFRVSSNLAVHQRVHTGEKPYKCDVCGK 809

Query: 52  VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
            F Q + L  H       +PYKCD C K+F ++  L  HQ IH+G +P+KC  CDK+F++
Sbjct: 810 AFSQATGLAVHQRIHTGEKPYKCDVCGKAFNHTTRLQLHQRIHTGEKPYKCNVCDKAFIS 869

Query: 112 QINPTSTHTPTYT----------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRM 155
             N  S H   +T                 SNL  H  +++   KPY+CD C + F    
Sbjct: 870 AAN-LSVHRKLHTGEKPYKCDICGKGFRVSSNLGIHRSVHT-GEKPYKCDVCGKAFSHTG 927

Query: 156 NLISH 160
           NL  H
Sbjct: 928 NLAVH 932

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296477336|tpg|DAA19451.1| TPA: zinc finger protein 107 [Bos taurus]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 33/186 (17%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCH 50
            F++T NL +  +     +H  +  YKC  C +   +S+N  VH          KC+ C 
Sbjct: 398 AFSRTGNLTVHRR-----VHTGEKPYKCDMCGKAFRVSSNLAVHQRVHTGEKPYKCDVCG 452

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           K F Q + L  H       +PYKCD C K+F ++  L  HQ IH+G +P+KC  CDK+F+
Sbjct: 453 KAFSQATGLAVHQRIHTGEKPYKCDVCGKAFNHTTRLQLHQRIHTGEKPYKCNVCDKAFI 512

Query: 111 NQINPTSTHTPTYT----------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDR 154
           +  N  S H   +T                 SNL  H  +++   KPY+CD C + F   
Sbjct: 513 SAAN-LSVHRKLHTGEKPYKCDICGKGFRVSSNLGIHRSVHT-GEKPYKCDVCGKAFSHT 570

Query: 155 MNLISH 160
            NL  H
Sbjct: 571 GNLAVH 576

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410054428|ref|XP_003316675.2| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 611 [Pan troglodytes]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 438 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 497

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 498 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKISHTGEKPYKCKVCDKAFA--------- 548

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ HH
Sbjct: 549 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHH 585

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|21757193|dbj|BAC05052.1| unnamed protein product [Homo sapiens]

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 438 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 497

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 498 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 548

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ HH
Sbjct: 549 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHH 585

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|239787080|ref|NP_112234.3| zinc finger protein 611 isoform a [Homo sapiens] gi|239787082|ref|NP_001154971.1| zinc finger protein 611 isoform a [Homo sapiens] gi|239787084|ref|NP_001154972.1| zinc finger protein 611 isoform a [Homo sapiens] gi|269849530|sp|Q8N823.2|ZN611_HUMAN RecName: Full=Zinc finger protein 611 gi|119592500|gb|EAW72094.1| zinc finger protein 611, isoform CRA_b [Homo sapiens]

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 438 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 497

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 498 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 548

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ HH
Sbjct: 549 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHH 585

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|239787086|ref|NP_001154973.1| zinc finger protein 611 isoform b [Homo sapiens] gi|119592499|gb|EAW72093.1| zinc finger protein 611, isoform CRA_a [Homo sapiens] gi|193787141|dbj|BAG52347.1| unnamed protein product [Homo sapiens] gi|223459598|gb|AAI36344.1| ZNF611 protein [Homo sapiens]

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 369 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 428

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 429 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 479

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ HH
Sbjct: 480 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHH 516

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|50949560|emb|CAH10596.1| hypothetical protein [Homo sapiens]

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 27/162 (16%)

Query: 13  QQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSL 59
           + +L+C   +HG + +YKC  C +    S+    H          KC  C K F Q S L
Sbjct: 331 KSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQNSDL 390

Query: 60  LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
           L H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F          
Sbjct: 391 LIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFA--------- 441

Query: 120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
                 S LA+H+ ++S   KPY+C+ CS+ F  R  L+ HH
Sbjct: 442 ----CHSYLAKHTRIHS-GEKPYKCNECSKTFSHRSYLVCHH 478

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296477354|tpg|DAA19469.1| TPA: zinc finger protein 347-like [Bos taurus]

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 27/170 (15%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCH 50
           +F++  NL     QT   +H  +  YKC +C +   + +N   H          KC+ C 
Sbjct: 172 VFSKNSNLA--GHQT---VHTGEKPYKCDECGKAFRVKSNLLKHQTVHTGEKRYKCDECG 226

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           KVF + S+L  H       +PYKCD C K+F    NL  HQ +H+G +P+KC  C K+F+
Sbjct: 227 KVFSKNSNLAGHQTVHTGEKPYKCDECGKAFRVKSNLLQHQTVHTGEKPYKCDECGKAFI 286

Query: 111 NQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
              N           SNLA H  +++   KPY+CD C + F  + NL+SH
Sbjct: 287 FSKN-----------SNLAGHQTVHTG-EKPYKCDECGKAFRVKSNLLSH 324

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344243619|gb|EGV99722.1| Zinc finger protein 160 [Cricetulus griseus]

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 29/171 (16%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCH 50
           +F+QT NL    +     IH  +  YKC++C +   + ++   H          KC  C 
Sbjct: 385 VFSQTSNLARHWR-----IHTGEKPYKCNECGKAFSVRSSLTSHLVIHTGEKPYKCNKCG 439

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           KVF Q SSL  H       +PY+C+ C K+F +  NLNTHQ+IHSG +P+KC  C K F 
Sbjct: 440 KVFSQTSSLAIHQRIHTGEKPYRCNECGKAFNSHSNLNTHQVIHSGQKPYKCLECGKVFT 499

Query: 111 NQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
                          S+LA H   ++   KPY+CD+C + F     L +HH
Sbjct: 500 QN-------------SHLANHRRTHT-GEKPYKCDKCGKAFSVYSTLTTHH 536

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327281828|ref|XP_003225647.1| PREDICTED: zinc finger protein 268-like [Anolis carolinensis]

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 31/185 (16%)

Query: 1   MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQR-------LIFLSA-NAGVH--KCEYCH 50
           +FT   NL+  S Q    IH     +KC QC++       LI+  A + GV   KC  C 
Sbjct: 350 IFTHKRNLI--SHQA---IHTGVKQFKCLQCEKSFSRKGHLIYHQATHTGVKPFKCMQCE 404

Query: 51  KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           K F ++ SL+SH       +P+KC  CEKSF+  +NL +HQ  H+G++PFKC  C+KSF 
Sbjct: 405 KSFSEKRSLISHQRTHTGEKPFKCMQCEKSFSEKRNLISHQATHTGVKPFKCMQCEKSFS 464

Query: 111 ---NQINPTSTHTPTY------------TKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRM 155
              N I+  +THT                K NL  H   ++   KP++C +C + F ++ 
Sbjct: 465 EKRNLISHQATHTGVKPFKCMQCEKSFSEKRNLISHQATHTGV-KPFKCMQCEKSFSEKR 523

Query: 156 NLISH 160
           NLISH
Sbjct: 524 NLISH 528

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
UNIPROTKB|Q8N823	705	ZNF611 "Zinc finger protein 61	0.691	0.194	0.363	8.1e-22
UNIPROTKB|F1M3L0	375	LOC100365021 "Protein LOC10036	0.717	0.378	0.349	1.9e-21
UNIPROTKB|F1LV11	351	LOC100365021 "Protein LOC10036	0.646	0.364	0.348	6.3e-21
UNIPROTKB|F1M3T5	454	LOC100365021 "Protein LOC10036	0.717	0.312	0.349	6.3e-21
UNIPROTKB|F1LT28	545	LOC100365021 "Protein LOC10036	0.717	0.260	0.349	1.1e-20
UNIPROTKB|Q6ZNA1	936	ZNF836 "Zinc finger protein 83	0.767	0.162	0.340	1.2e-20
RGD|2319849	624	LOC100365021 "rCG64132-like" [	0.717	0.227	0.349	1.6e-20
UNIPROTKB|A6NNF4	738	ZNF726 "Zinc finger protein 72	0.702	0.188	0.339	2.2e-20
UNIPROTKB|F1MX34	1053	F1MX34 "Uncharacterized protei	0.767	0.144	0.324	5.1e-20
UNIPROTKB|F1SRB1	522	ZNF502 "Uncharacterized protei	0.722	0.273	0.335	5.9e-20

UNIPROTKB|Q8N823 ZNF611 "Zinc finger protein 611" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 8.1e-22, P = 8.1e-22
 Identities = 60/165 (36%), Positives = 86/165 (52%)

Query:    11 FSQQT-LLC---IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQ 56
             FS ++ L+C   +HG + +YKC  C +    S+    H          KC  C K F Q 
Sbjct:   435 FSHKSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKTFGQN 494

Query:    57 SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT 116
             S LL H       +PYKCD CEK F+   +L TH++ H+G +P+KC  CDK+F       
Sbjct:   495 SDLLIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAF------- 547

Query:   117 STHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH 161
             + H      S LA+H+ ++S   KPY+C+ CS+ F  R  L+ HH
Sbjct:   548 ACH------SYLAKHTRIHSG-EKPYKCNECSKTFSHRSYLVCHH 585

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1M3L0 LOC100365021 "Protein LOC100365021" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 58/166 (34%), Positives = 80/166 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   142 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 201

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PTSTHT--PTY 123
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+        HT    Y
Sbjct:   202 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVRLRIHQRIHTGDKPY 261

Query:   124 TKSN----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISH 160
               S       Q S ++SH       KP++C  C + FG + +L SH
Sbjct:   262 KCSECDKCFGQKSHLSSHQRVHTGEKPFKCSECDKCFGQKSHLSSH 307

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LV11 LOC100365021 "Protein LOC100365021" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 53/152 (34%), Positives = 73/152 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   193 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 252

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNL 128
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+     H   +T    
Sbjct:   253 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVR-LRIHQRIHTGD-- 309

Query:   129 AQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
                        KPY+C  C + FG + +L SH
Sbjct:   310 -----------KPYKCSECDKCFGQKSHLSSH 330

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1M3T5 LOC100365021 "Protein LOC100365021" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 58/166 (34%), Positives = 80/166 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   195 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 254

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PTSTHT--PTY 123
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+        HT    Y
Sbjct:   255 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVRLRIHQRIHTGDKPY 314

Query:   124 TKSN----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISH 160
               S       Q S ++SH       KP++C  C + FG + +L SH
Sbjct:   315 KCSECDKCFGQKSHLSSHQRVHTGEKPFKCSECDKCFGQKSHLSSH 360

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1LT28 LOC100365021 "Protein LOC100365021" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 58/166 (34%), Positives = 80/166 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   277 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 336

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PTSTHT--PTY 123
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+        HT    Y
Sbjct:   337 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVRLRIHQRIHTGDKPY 396

Query:   124 TKSN----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISH 160
               S       Q S ++SH       KP++C  C + FG + +L SH
Sbjct:   397 KCSECDKCFGQKSHLSSHQRVHTGEKPFKCSECDKCFGQKSHLSSH 442

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q6ZNA1 ZNF836 "Zinc finger protein 836" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 63/185 (34%), Positives = 95/185 (51%)

Query:     2 FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLI----FLSANAGVH------KCEYCHK 51
             F+Q+ NL +  +     IH  +  YKC++C +       L+ +  +H      +C+ C K
Sbjct:   311 FSQSYNLAIHQR-----IHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGK 365

Query:    52 VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
             VF Q S+L++H       +PYKC+ C KSF+ S NL THQ +HSG +P+KC  C K+F  
Sbjct:   366 VFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKR 425

Query:   112 QINPTS---THT--PTYT----------KSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRM 155
               + T+    HT    YT          +S LA+H    SH   KPY+C+ C + F    
Sbjct:   426 SSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQ--RSHTGEKPYKCNECGKVFSQTS 483

Query:   156 NLISH 160
             +L+ H
Sbjct:   484 HLVGH 488

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|2319849 LOC100365021 "rCG64132-like" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 58/166 (34%), Positives = 80/166 (48%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +      N  +H          KC  C K F Q+S L SH      
Sbjct:   223 IHAGEKPYKCSECDKYFGHKLNLRIHQRIHTGEKPYKCGKCEKCFCQKSHLNSHQRVHTG 282

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN---PTSTHT--PTY 123
              +PYKC  C+KSF +  NL  HQ IH+G +P+KC+ CDK F++Q+        HT    Y
Sbjct:   283 DKPYKCSECDKSFVHKLNLRIHQRIHTGEKPYKCSECDKCFIHQVRLRIHQRIHTGDKPY 342

Query:   124 TKSN----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISH 160
               S       Q S ++SH       KP++C  C + FG + +L SH
Sbjct:   343 KCSECDKCFGQKSHLSSHQRVHTGEKPFKCSECDKCFGQKSHLSSH 388

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A6NNF4 ZNF726 "Zinc finger protein 726" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 57/168 (33%), Positives = 85/168 (50%)

Query:    11 FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVHK----------CEYCHKVFDQQ 56
             FSQ + L     IH  +  YKC +C +   LS+    HK          CE C K F+Q 
Sbjct:   490 FSQSSTLTAHKIIHTGEKPYKCEECGKAFILSSTLSKHKRIHTGEKPYKCEECGKTFNQS 549

Query:    57 SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT 116
             S+L +H       +PYKC+ C K+F  S NL+TH++IH+G +P+KC  C KSF+      
Sbjct:   550 SNLSTHKIIHTGEKPYKCEECGKAFNRSSNLSTHKIIHTGEKPYKCDECGKSFI------ 603

Query:   117 STHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHK 164
                      S L +H  +++   KPY+C+ C + F +   ++ H  HK
Sbjct:   604 -------WSSTLFKHKIIHTG-EKPYKCEECGKAF-NHSQILLHIRHK 642

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MX34 F1MX34 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 5.1e-20, P = 5.1e-20
 Identities = 60/185 (32%), Positives = 87/185 (47%)

Query:     2 FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHK 51
             F++T NL +  +     +H  +  YKC  C +   +S+N  VH          KC+ C K
Sbjct:   743 FSRTGNLTVHRR-----VHTGEKPYKCDMCGKAFRVSSNLAVHQRVHTGEKPYKCDVCGK 797

Query:    52 VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
              F Q + L  H       +PYKCD C K+F ++  L  HQ IH+G +P+KC  CDK+F++
Sbjct:   798 AFSQATGLAVHQRIHTGEKPYKCDVCGKAFNHTTRLQLHQRIHTGEKPYKCNVCDKAFIS 857

Query:   112 QINPTSTHTPTYT----------------KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRM 155
               N  S H   +T                 SNL  H  +++   KPY+CD C + F    
Sbjct:   858 AAN-LSVHRKLHTGEKPYKCDICGKGFRVSSNLGIHRSVHTG-EKPYKCDVCGKAFSHTG 915

Query:   156 NLISH 160
             NL  H
Sbjct:   916 NLAVH 920

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SRB1 ZNF502 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 5.9e-20, P = 5.9e-20
 Identities = 56/167 (33%), Positives = 75/167 (44%)

Query:    19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
             IH  +  YKC +C +     AN   H          KC+ C K F Q  SL+ H      
Sbjct:   294 IHTGEKPYKCDECAKTFHTKANLSQHQRIHTGEKPYKCKECGKAFCQSPSLIKHQRIHTG 353

Query:    69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQI---NPTSTHTPTYT- 124
              +PYKC  C K+F  S  L  HQ IH+G RP+KC+ C K+F+  I       +HT     
Sbjct:   354 EKPYKCKECGKAFAQSTPLTKHQRIHTGERPYKCSECGKAFIQSICLIRHQRSHTGEKPY 413

Query:   125 KSN-----LAQHSCMNSHF-----PKPYQCDRCSQFFGDRMNLISHH 161
             K N       Q++C+  H       KPY+C  C + F    +L  HH
Sbjct:   414 KCNECGKGFNQNTCLTQHMRIHTGEKPYKCQECGKAFAHNTSLTEHH 460

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	0.003

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 86  NLNTHQLIHSGIRPFKCTTCDKSFVN 111
           NL  H   H+G +P+KC  C KSF +
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG2462|consensus	279		99.93
KOG2462|consensus	279		99.91
KOG3608|consensus	467		99.83
KOG1074|consensus	958		99.79
KOG1074|consensus	958		99.69
KOG3608|consensus	467		99.63
KOG3576|consensus	267		99.62
KOG3576|consensus	267		99.6
KOG3623|consensus	1007		99.44
PLN03086	567	PRLI-interacting factor K; Provisional	99.4
KOG3623|consensus	1007		99.37
PHA00733	128	hypothetical protein	99.07
PLN03086	567	PRLI-interacting factor K; Provisional	98.94
KOG3993|consensus	500		98.74
PHA00733	128	hypothetical protein	98.67
PHA02768	55	hypothetical protein; Provisional	98.64
PHA02768	55	hypothetical protein; Provisional	98.51
PHA00616	44	hypothetical protein	98.5
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.46
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.46
PHA00616	44	hypothetical protein	98.09
KOG3993|consensus	500		98.07
PHA00732	79	hypothetical protein	98.03
PHA00732	79	hypothetical protein	98.01
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.96
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.92
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.81
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.7
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.42
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.29
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.27
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.16
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.04
smart00355	26	ZnF_C2H2 zinc finger.	96.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.82
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.62
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.57
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.53
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.4
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.23
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.87
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.83
smart00355	26	ZnF_C2H2 zinc finger.	95.45
PRK04860	160	hypothetical protein; Provisional	95.24
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.61
PRK04860	160	hypothetical protein; Provisional	94.48
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	94.25
COG5048	467	FOG: Zn-finger [General function prediction only]	94.18
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.05
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	94.0
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.94
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.77
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	93.5
KOG2231|consensus	669		93.33
COG4049	65	Uncharacterized protein containing archaeal-type C	93.25
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.03
KOG2893|consensus	341		91.89
KOG2893|consensus	341		91.8
COG5048	467	FOG: Zn-finger [General function prediction only]	91.74
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	91.18
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	91.09
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	90.93
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	90.77
KOG1146|consensus	1406		90.43
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.15
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	89.92
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.12
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	89.02
PF14369	35	zf-RING_3: zinc-finger	88.85
KOG4173|consensus	253		88.51
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	88.11
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	87.95
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	87.79
COG5236	493	Uncharacterized conserved protein, contains RING Z	87.3
KOG2231|consensus	669		85.94
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	85.92
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.51
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	85.47
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	85.43
COG1592	166	Rubrerythrin [Energy production and conversion]	85.06
PTZ00255	90	60S ribosomal protein L37a; Provisional	85.01
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	84.25
PF14353	128	CpXC: CpXC protein	84.17
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	84.15
KOG1146|consensus	1406		83.96
KOG2186|consensus	276		83.87
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	83.28
PRK03976	90	rpl37ae 50S ribosomal protein L37Ae; Reviewed	82.02
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	82.01
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	81.6

>KOG2462|consensus

Probab=99.93  E-value=7.8e-27  Score=174.20  Aligned_cols=124  Identities=33%  Similarity=0.619  Sum_probs=105.4

Q ss_pred             CCccccCcccchhhcccCCC-------------ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHH
Q psy11761         23 DNAYKCHQCQRLIFLSANAG-------------VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNT   89 (198)
Q Consensus        23 ~~~~~C~~C~~~f~~~~~~~-------------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   89 (198)
                      ..-|+|+.||+.+.+.++|.             .+.|..|++.+.....|..|+++|+  .+..|.+||+.|+....|+-
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQG  205 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQG  205 (279)
T ss_pred             CCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhc
Confidence            34588888998888877654             5678889998888888888888888  68888999999988888888


Q ss_pred             hhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhh
Q psy11761         90 HQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus        90 H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      |+|+|+|||||.|+.|+++|.+             +++|+.|+.+|. +.|.|+|..|+|.|...+-|.+|..
T Consensus       206 HiRTHTGEKPF~C~hC~kAFAD-------------RSNLRAHmQTHS-~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFAD-------------RSNLRAHMQTHS-DVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             ccccccCCCCccCCcccchhcc-------------hHHHHHHHHhhc-CCccccCcchhhHHHHHHHHHHhhh
Confidence            9999999999999999999988             888888988888 6788999999999988888888864

>KOG2462|consensus

Probab=99.91  E-value=2.2e-25  Score=166.49  Aligned_cols=125  Identities=26%  Similarity=0.448  Sum_probs=116.0

Q ss_pred             ceecCccccccCChhHHhhcccCCCC---CCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCccc
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMK---PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH  119 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~  119 (198)
                      .|+|.+|++.+...++|.+|+.+|..   .+.+.|..|++.+..-..|..|+++|+  -+.+|.+||+.|.+        
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSR--------  199 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSR--------  199 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccc--------
Confidence            68999999999999999999999853   678999999999999999999999999  57899999999998        


Q ss_pred             CCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccccCCCcccc
Q psy11761        120 TPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKV  185 (198)
Q Consensus       120 ~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~  185 (198)
                           ..-|..|+|+|+ |||||.|+.|+|.|..+++|+.||.+|.+.|  .|.|..|++.++.+-
T Consensus       200 -----PWLLQGHiRTHT-GEKPF~C~hC~kAFADRSNLRAHmQTHS~~K--~~qC~~C~KsFsl~S  257 (279)
T KOG2462|consen  200 -----PWLLQGHIRTHT-GEKPFSCPHCGKAFADRSNLRAHMQTHSDVK--KHQCPRCGKSFALKS  257 (279)
T ss_pred             -----hHHhhccccccc-CCCCccCCcccchhcchHHHHHHHHhhcCCc--cccCcchhhHHHHHH
Confidence                 888999999999 9999999999999999999999999999999  788999998876553

>KOG3608|consensus

Probab=99.83  E-value=6e-22  Score=152.23  Aligned_cols=157  Identities=25%  Similarity=0.457  Sum_probs=118.0

Q ss_pred             CccccceeeeechhhhhhhCCCCccccCcccchhhcccCCC------------ceecCccccccCChhHHhhcccCCCCC
Q psy11761          2 FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAG------------VHKCEYCHKVFDQQSSLLSHNCPQMKP   69 (198)
Q Consensus         2 f~~~~~l~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~~~------------~~~C~~C~~~f~~~~~l~~H~~~h~~~   69 (198)
                      |.++..|+     +|++.|++++...|+.||..|.++..+-            +|.|..|.+.|.....|..|+..|.  
T Consensus       189 ~~~k~~Lr-----eH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv--  261 (467)
T KOG3608|consen  189 MGNKYRLR-----EHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV--  261 (467)
T ss_pred             hccHHHHH-----HHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh--
Confidence            55677888     9999999999999999999998765432            7888888888888888888877766  


Q ss_pred             CCccCccchhcccCchhHHHhhh-hcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCc--
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQL-IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--  146 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~--  146 (198)
                      .-|+|+.|+...+..++|..|++ .|...|||+|+.|++.|.+             .+.|.+|...|+  +..|.|+.  
T Consensus       262 n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~-------------esdL~kH~~~HS--~~~y~C~h~~  326 (467)
T KOG3608|consen  262 NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVR-------------ESDLAKHVQVHS--KTVYQCEHPD  326 (467)
T ss_pred             hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhcc-------------HHHHHHHHHhcc--ccceecCCCC
Confidence            56788888888888888888877 4667788888888888887             666777776554  55666666  


Q ss_pred             chhhhcChhHHHhhhhhhC-CCCCCCcccccccCC
Q psy11761        147 CSQFFGDRMNLISHHCHKH-KQSCLPFISRLFGFD  180 (198)
Q Consensus       147 C~k~f~~~~~L~~H~~~~~-~~~~~~~~~~~~~~~  180 (198)
                      |..+|.+..++++|++.++ |.-|.+|.|-.|..-
T Consensus       327 C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~  361 (467)
T KOG3608|consen  327 CHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRF  361 (467)
T ss_pred             CcHHHHHHHHHHHHHHHhccCCCCCceeeecchhh
Confidence            6666666666677766555 555555555555443

>KOG1074|consensus

Probab=99.79  E-value=3.1e-20  Score=156.02  Aligned_cols=51  Identities=33%  Similarity=0.705  Sum_probs=48.0

Q ss_pred             ecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcC
Q psy11761         45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      +|-+|-+.+...+.|..|+++|+|++||+|.+|+++|..+.+|..|+..|.
T Consensus       607 qCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  607 QCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             ceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc
Confidence            799999999999999999999999999999999999999999999987664

>KOG1074|consensus

Probab=99.69  E-value=9.7e-18  Score=141.26  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             cccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCC--CCcccc---cccCCCcccchhcccceecC
Q psy11761        125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSC--LPFISR---LFGFDDGDKVAKFSGRVVDT  195 (198)
Q Consensus       125 ~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~  195 (198)
                      .+.|.-|.+.|+ |++||+|.+||+.|+++.+|+.||-+|....|  .++.|+   +|..++.+.+....+-.+..
T Consensus       618 ~saLqmHyrtHt-GERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQhIriH~  692 (958)
T KOG1074|consen  618 PSALQMHYRTHT-GERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLPQHIRIHL  692 (958)
T ss_pred             hhhhhhhhhccc-CcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccccceEEeec
Confidence            468899999999 99999999999999999999999998865433  578899   99999988887776665544

>KOG3608|consensus

Probab=99.63  E-value=6.1e-17  Score=124.89  Aligned_cols=165  Identities=24%  Similarity=0.434  Sum_probs=137.8

Q ss_pred             CCccccceeeeechhhhhhh--CCCCccccCcccchhhcccCCC--------ceecCccccccCChhHHhhcccC-CCCC
Q psy11761          1 MFTQTPNLVLFSQQTLLCIH--GNDNAYKCHQCQRLIFLSANAG--------VHKCEYCHKVFDQQSSLLSHNCP-QMKP   69 (198)
Q Consensus         1 ~f~~~~~l~~~~~~~h~~~h--~~~~~~~C~~C~~~f~~~~~~~--------~~~C~~C~~~f~~~~~l~~H~~~-h~~~   69 (198)
                      +|..+..|.     .|++-.  ....+|.|..|.+.|.+...|.        -|+|+.|.++.+..++|..|++. |...
T Consensus       216 ~F~~~tkl~-----DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~d  290 (467)
T KOG3608|consen  216 LFRTKTKLF-----DHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKD  290 (467)
T ss_pred             HhccccHHH-----HHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccC
Confidence            366677776     775443  3556999999999998866554        68999999999999999999886 5568


Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCCCcccCCc--CchhhhcccCCCcccCCCcCcccccccccccccCC--CCeeCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP--KPYQCD  145 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~--~~~~C~  145 (198)
                      +||+|+.|++.+....+|..|..+|+ +..|.|..  |...|..             ...+.+|++.++.|.  -+|.|.
T Consensus       291 kpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~-------------~~q~~~H~~evhEg~np~~Y~CH  356 (467)
T KOG3608|consen  291 KPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRT-------------YTQMRRHFLEVHEGNNPILYACH  356 (467)
T ss_pred             CCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHH-------------HHHHHHHHHHhccCCCCCceeee
Confidence            99999999999999999999999999 66799976  9999998             889999999887554  479999


Q ss_pred             cchhhhcChhHHHhhhhhhC------CCCCCCcccccccCCCccc
Q psy11761        146 RCSQFFGDRMNLISHHCHKH------KQSCLPFISRLFGFDDGDK  184 (198)
Q Consensus       146 ~C~k~f~~~~~L~~H~~~~~------~~~~~~~~~~~~~~~~~~~  184 (198)
                      .|++.|++..+|..|+...|      |.+.|.|....-|++.-..
T Consensus       357 ~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~mRLqt  401 (467)
T KOG3608|consen  357 CCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFMRLQT  401 (467)
T ss_pred             cchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCceeeeee
Confidence            99999999999999987665      4666777777777765433

>KOG3576|consensus

Probab=99.62  E-value=4.1e-17  Score=117.05  Aligned_cols=111  Identities=27%  Similarity=0.491  Sum_probs=68.4

Q ss_pred             ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCC
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPT  122 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~  122 (198)
                      .|.|.+|++.|....-|.+|+.-|...+.+.|..||+.|.+.-+|.+|+++|+|.+||.|..|++.|..           
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftq-----------  185 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQ-----------  185 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHh-----------
Confidence            456666666666666666666666666666666666666666666666666666666666666666665           


Q ss_pred             cCccccccccccccc----------CCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        123 YTKSNLAQHSCMNSH----------FPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       123 ~~~~~l~~H~~~~~~----------~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                        .-.|..|.+..+.          ..+-|+|+.||..-.....+..|+..||.
T Consensus       186 --rcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  186 --RCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             --hccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence              4444444433321          13456666666666666666666666654

>KOG3576|consensus

Probab=99.60  E-value=7.7e-17  Score=115.64  Aligned_cols=103  Identities=26%  Similarity=0.515  Sum_probs=92.7

Q ss_pred             CCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcch
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCS  148 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~  148 (198)
                      ...|.|.+|++.|.-..-|.+|++-|.+.+.+.|..||+.|-+             .-+|++|+++|+ |-+||+|..|+
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfnd-------------tfdlkrh~rtht-gvrpykc~~c~  180 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFND-------------TFDLKRHTRTHT-GVRPYKCSLCE  180 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccc-------------hhhhhhhhcccc-Cccccchhhhh
Confidence            4568999999999999999999999999999999999999987             889999999999 89999999999


Q ss_pred             hhhcChhHHHhhhhhhCCC---------CCCCcccccccCCCcccc
Q psy11761        149 QFFGDRMNLISHHCHKHKQ---------SCLPFISRLFGFDDGDKV  185 (198)
Q Consensus       149 k~f~~~~~L~~H~~~~~~~---------~~~~~~~~~~~~~~~~~~  185 (198)
                      |+|+++.+|..|++..||.         +..-|.|+.||+...+.-
T Consensus       181 kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e  226 (267)
T KOG3576|consen  181 KAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPE  226 (267)
T ss_pred             HHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChh
Confidence            9999999999999888762         344678999999876543

>KOG3623|consensus

Probab=99.44  E-value=2.6e-14  Score=119.36  Aligned_cols=81  Identities=36%  Similarity=0.773  Sum_probs=76.3

Q ss_pred             CCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcc
Q psy11761         68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRC  147 (198)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C  147 (198)
                      ...+|.|+.|++.|--..+|.+|.-.|+|.+||.|.+|.++|..             +.+|..|+|.|. |+|||+|+.|
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKH-------------KHHLtEHkRLHS-GEKPfQCdKC  956 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKH-------------KHHLTEHKRLHS-GEKPFQCDKC  956 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhh-------------hhhhhhhhhhcc-CCCcchhhhh
Confidence            45689999999999999999999999999999999999999998             999999999999 8999999999


Q ss_pred             hhhhcChhHHHhhhh
Q psy11761        148 SQFFGDRMNLISHHC  162 (198)
Q Consensus       148 ~k~f~~~~~L~~H~~  162 (198)
                      +|+|....++.+||.
T Consensus       957 lKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  957 LKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhhcccccchHhhhc
Confidence            999999999999985

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.40  E-value=2.3e-13  Score=113.38  Aligned_cols=130  Identities=17%  Similarity=0.356  Sum_probs=102.7

Q ss_pred             cccCc--ccchhhcccCCCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         26 YKCHQ--CQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        26 ~~C~~--C~~~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      ..|+.  |+..|....-...+.|+.|++.|. ...|..|+..++  .++.|+ |+..+ ....|..|+.+|.+.+++.|+
T Consensus       434 V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~  508 (567)
T PLN03086        434 VVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCR  508 (567)
T ss_pred             eeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCC
Confidence            45875  999887777777889999999996 577999999886  789999 99765 568899999999999999999


Q ss_pred             cCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        104 TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       104 ~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      .|++.|....++.+   .....+.|..|....  +.+++.|..||+.+..+ .+..|+...|.
T Consensus       509 fC~~~v~~g~~~~d---~~d~~s~Lt~HE~~C--G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        509 FCGDMVQAGGSAMD---VRDRLRGMSEHESIC--GSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             CCCCccccCccccc---hhhhhhhHHHHHHhc--CCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence            99999853111000   000145788998886  68999999999999888 88999877664

>KOG3623|consensus

Probab=99.37  E-value=1e-13  Score=115.84  Aligned_cols=78  Identities=37%  Similarity=0.800  Sum_probs=74.2

Q ss_pred             ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCC
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPT  122 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~  122 (198)
                      +|.|.+|.+.|...++|.+|.=-|+|.+||.|.+|.++|..+..|..|+|.|.|+|||.|+.|+++|..           
T Consensus       894 myaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSH-----------  962 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSH-----------  962 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhccc-----------
Confidence            799999999999999999999999999999999999999999999999999999999999999999998           


Q ss_pred             cCccccccccc
Q psy11761        123 YTKSNLAQHSC  133 (198)
Q Consensus       123 ~~~~~l~~H~~  133 (198)
                        ...+.+||.
T Consensus       963 --SGSYSQHMN  971 (1007)
T KOG3623|consen  963 --SGSYSQHMN  971 (1007)
T ss_pred             --ccchHhhhc
Confidence              677777773

>PHA00733 hypothetical protein

Probab=99.07  E-value=6.4e-11  Score=81.58  Aligned_cols=94  Identities=20%  Similarity=0.357  Sum_probs=70.1

Q ss_pred             hHHhhcccCCCCCCCccCccchhcccCchhHHHh--h---hhcCCCCcccCCcCchhhhcccCCCcccCCCcCccccccc
Q psy11761         57 SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH--Q---LIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH  131 (198)
Q Consensus        57 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H--~---~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H  131 (198)
                      .+|..+-..-...+++.|.+|...|.....|..+  +   ..+.+.+||.|+.|++.|.+             .+.|..|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss-------------~s~L~~H   92 (128)
T PHA00733         26 EELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSS-------------SVSLKQH   92 (128)
T ss_pred             HHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCC-------------HHHHHHH
Confidence            3443332223335678899998888776555544  1   12345789999999999998             8889999


Q ss_pred             ccccccCCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        132 SCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       132 ~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ++.+   +.++.|+.|++.|.....|..|+...|+
T Consensus        93 ~r~h---~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         93 IRYT---EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HhcC---CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            9865   3579999999999999999999988775

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.94  E-value=8.1e-10  Score=92.48  Aligned_cols=124  Identities=18%  Similarity=0.374  Sum_probs=91.2

Q ss_pred             cccCcccchhhcccCCC--------ceecCc--cccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcC
Q psy11761         26 YKCHQCQRLIFLSANAG--------VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        26 ~~C~~C~~~f~~~~~~~--------~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      ..|+.|.+......-..        .-.|+.  |+..|.. ..+..|         +.|+.|++.|. ...+..|+..++
T Consensus       408 V~C~NC~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r-~el~~H---------~~C~~Cgk~f~-~s~LekH~~~~H  476 (567)
T PLN03086        408 VECRNCKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRV-EEAKNH---------VHCEKCGQAFQ-QGEMEKHMKVFH  476 (567)
T ss_pred             EECCCCCCccchhHHHHHHhhCCCcceeCCcccccceeec-cccccC---------ccCCCCCCccc-hHHHHHHHHhcC
Confidence            46888887654432211        235774  8887733 334444         48999999996 577999999975


Q ss_pred             CCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcC----------hhHHHhhhhhhC
Q psy11761         96 GIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGD----------RMNLISHHCHKH  165 (198)
Q Consensus        96 ~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~----------~~~L~~H~~~~~  165 (198)
                        +++.|+ ||+.+ .             +..|..|...+. ..+++.|+.|++.|..          .+.|..|.... 
T Consensus       477 --kpv~Cp-Cg~~~-~-------------R~~L~~H~~thC-p~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-  537 (567)
T PLN03086        477 --EPLQCP-CGVVL-E-------------KEQMVQHQASTC-PLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-  537 (567)
T ss_pred             --CCccCC-CCCCc-c-------------hhHHHhhhhccC-CCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-
Confidence              789999 99765 4             789999998888 6899999999999952          34788897774 


Q ss_pred             CCCCCCcccccccCCC
Q psy11761        166 KQSCLPFISRLFGFDD  181 (198)
Q Consensus       166 ~~~~~~~~~~~~~~~~  181 (198)
                      |.++  +.|..|+...
T Consensus       538 G~rt--~~C~~Cgk~V  551 (567)
T PLN03086        538 GSRT--APCDSCGRSV  551 (567)
T ss_pred             CCcc--eEccccCCee
Confidence            7774  5668887543

>KOG3993|consensus

Probab=98.74  E-value=3.4e-09  Score=84.22  Aligned_cols=113  Identities=19%  Similarity=0.423  Sum_probs=79.8

Q ss_pred             ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCC
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPT  122 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~  122 (198)
                      -|.|+.|...|...-.|..|.-.......|+|++|++.|+..++|..|.++|.+...-.-        ....+.+.... 
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~--------a~~~P~k~~~~-  337 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAK--------AGSPPPKQAVE-  337 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhh--------cCCCChhhhhh-
Confidence            589999999999999999999988888899999999999999999999999986542110        00001000000 


Q ss_pred             cCccccccccc-c-cccCCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        123 YTKSNLAQHSC-M-NSHFPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       123 ~~~~~l~~H~~-~-~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                        ...+.+-.- . ....+.-|.|..|+|.|.+..-|++|+.+|+.
T Consensus       338 --~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  338 --TRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             --hhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence              000000000 0 00124589999999999999999999988863

>PHA00733 hypothetical protein

Probab=98.67  E-value=5.8e-09  Score=71.89  Aligned_cols=78  Identities=21%  Similarity=0.330  Sum_probs=60.4

Q ss_pred             ceecCccccccCChhH------HhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCC
Q psy11761         43 VHKCEYCHKVFDQQSS------LLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT  116 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~------l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~  116 (198)
                      ++.|.+|...|.....      |..|+. +++.+||.|+.|++.|.....|..|++.+  ..+|.|..|++.|..     
T Consensus        40 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~-----  111 (128)
T PHA00733         40 RLIRAVVKTLIYNPQLLDESSYLYKLLT-SKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRN-----  111 (128)
T ss_pred             hHHHHHHhhhccChhhhcchHHHHhhcc-cCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCC-----
Confidence            3456666665555443      344443 34588999999999999999999999876  357999999999998     


Q ss_pred             cccCCCcCcccccccccccc
Q psy11761        117 STHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus       117 ~~~~~~~~~~~l~~H~~~~~  136 (198)
                              ...|..|++..+
T Consensus       112 --------~~sL~~H~~~~h  123 (128)
T PHA00733        112 --------TDSTLDHVCKKH  123 (128)
T ss_pred             --------HHHHHHHHHHhc
Confidence                    888999987766

>PHA02768 hypothetical protein; Provisional

Probab=98.64  E-value=1.6e-08  Score=58.11  Aligned_cols=39  Identities=21%  Similarity=0.526  Sum_probs=29.8

Q ss_pred             CccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhc
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (198)
                      .|.|+.||+.|.....|..|+++|+  +++.|..|++.|..
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~   43 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLR   43 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecc
Confidence            4677778888877777778877777  57777778777765

>PHA02768 hypothetical protein; Provisional

Probab=98.51  E-value=3.8e-08  Score=56.62  Aligned_cols=46  Identities=13%  Similarity=0.275  Sum_probs=40.4

Q ss_pred             CCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHH
Q psy11761         41 AGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLN   88 (198)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   88 (198)
                      +..|.|+.||+.|.....|..|++.|+  ++++|..|++.|.....|.
T Consensus         3 ~~~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          3 LLGYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            446899999999999999999999999  7999999999998765543

>PHA00616 hypothetical protein

Probab=98.50  E-value=6.8e-08  Score=52.89  Aligned_cols=32  Identities=38%  Similarity=0.664  Sum_probs=29.4

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      ||+|+.||+.|..+++|.+|++.|||++++..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            68999999999999999999999999986653

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.46  E-value=6.3e-08  Score=47.58  Aligned_cols=25  Identities=48%  Similarity=0.970  Sum_probs=21.8

Q ss_pred             hHHHhhhhcCCCCcccCCcCchhhh
Q psy11761         86 NLNTHQLIHSGIRPFKCTTCDKSFV  110 (198)
Q Consensus        86 ~l~~H~~~h~~~k~~~C~~C~~~f~  110 (198)
                      +|..|+++|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4778999999999999999998885

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.46  E-value=3.2e-08  Score=48.65  Aligned_cols=23  Identities=22%  Similarity=0.544  Sum_probs=21.3

Q ss_pred             hhhhhhhCCCCccccCcccchhh
Q psy11761         14 QTLLCIHGNDNAYKCHQCQRLIF   36 (198)
Q Consensus        14 ~~h~~~h~~~~~~~C~~C~~~f~   36 (198)
                      +.||++|+|++||.|+.|++.|.
T Consensus         3 ~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    3 RRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHhhhcCCCCCCCCCCCcCeeC
Confidence            49999999999999999999885

...

>PHA00616 hypothetical protein

Probab=98.09  E-value=1.4e-06  Score=47.77  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             CccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      ||+|+.||+.|....++..|++.|++++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            5677777777777777777777777777776654

>KOG3993|consensus

Probab=98.07  E-value=1.4e-06  Score=69.73  Aligned_cols=70  Identities=30%  Similarity=0.533  Sum_probs=55.6

Q ss_pred             cccCcccchhhcccCCC----------ceecCccccccCChhHHhhcccCCCC--------C------------------
Q psy11761         26 YKCHQCQRLIFLSANAG----------VHKCEYCHKVFDQQSSLLSHNCPQMK--------P------------------   69 (198)
Q Consensus        26 ~~C~~C~~~f~~~~~~~----------~~~C~~C~~~f~~~~~l~~H~~~h~~--------~------------------   69 (198)
                      |.|..|-..|.....|.          .|+|++|++.|....+|..|++=|..        .                  
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r  347 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER  347 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence            78888887776544443          58999999999999999999776631        1                  


Q ss_pred             -------CCccCccchhcccCchhHHHhhhhcC
Q psy11761         70 -------RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        70 -------~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                             .-|.|..|++.|...+-|..|+.+|.
T Consensus       348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             cCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence                   12889999999999999999988764

>PHA00732 hypothetical protein

Probab=98.03  E-value=4e-06  Score=52.67  Aligned_cols=50  Identities=28%  Similarity=0.422  Sum_probs=39.2

Q ss_pred             ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      ||.|..|++.|.....|..|++.++.  ++.|+.|++.|.   .+..|.+++.+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~~~~   50 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQYDI   50 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---ChhhhhcccCCc
Confidence            57899999999999999999875332  358999999987   477788777654

>PHA00732 hypothetical protein

Probab=98.01  E-value=1.5e-06  Score=54.54  Aligned_cols=47  Identities=28%  Similarity=0.480  Sum_probs=36.4

Q ss_pred             cccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhh
Q psy11761         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~  164 (198)
                      ||.|..|++.|.+             .++|..|++.++.   ++.|+.|++.|.   .|..|..++
T Consensus         1 py~C~~Cgk~F~s-------------~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVT-------------LFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCC-------------HHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhccc
Confidence            5789999999988             8889999885431   358999999997   467776544

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.96  E-value=3.5e-06  Score=49.10  Aligned_cols=52  Identities=33%  Similarity=0.547  Sum_probs=38.8

Q ss_pred             cccCCcCchhhhcccCCCcccCCCcCcccccccccccccCC-CCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP-KPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~-~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      .|.|+.|++.|.              ...|..|....+..+ +.+.|++|...++  .+|..|+..+|+
T Consensus         2 ~f~CP~C~~~~~--------------~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGKGFS--------------ESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCCccC--------------HHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            478999999554              678888987765443 5688999998754  388888887663

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.92  E-value=4.8e-06  Score=39.47  Aligned_cols=23  Identities=30%  Similarity=0.677  Sum_probs=21.3

Q ss_pred             eeCCcchhhhcChhHHHhhhhhh
Q psy11761        142 YQCDRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~~~  164 (198)
                      |+|+.|++.|.+++.|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.81  E-value=1.4e-05  Score=38.06  Aligned_cols=24  Identities=29%  Similarity=0.641  Sum_probs=20.5

Q ss_pred             eeCCcchhhhcChhHHHhhhhhhC
Q psy11761        142 YQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      |.|++|++.|.+...|..|+.++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999998875

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.70  E-value=1.9e-05  Score=38.96  Aligned_cols=26  Identities=27%  Similarity=0.662  Sum_probs=23.7

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      +|+|+.|++.|.+...|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            68999999999999999999988763

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.42  E-value=5.9e-05  Score=58.54  Aligned_cols=53  Identities=28%  Similarity=0.632  Sum_probs=40.7

Q ss_pred             CCcccCCc--CchhhhcccCCCcccCCCcCcccccccccccc------------------cCCCCeeCCcchhhhcChhH
Q psy11761         97 IRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS------------------HFPKPYQCDRCSQFFGDRMN  156 (198)
Q Consensus        97 ~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~------------------~~~~~~~C~~C~k~f~~~~~  156 (198)
                      +|||.|++  |.+.+.+             ..+|+-|+.--+                  ...|||.|++|+|.|.....
T Consensus       347 ~KpykCpV~gC~K~Ykn-------------qnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNG  413 (423)
T COG5189         347 GKPYKCPVEGCNKKYKN-------------QNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNG  413 (423)
T ss_pred             CceecCCCCCchhhhcc-------------ccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCcc
Confidence            69999987  9999998             555555553221                  02589999999999999988


Q ss_pred             HHhhhh
Q psy11761        157 LISHHC  162 (198)
Q Consensus       157 L~~H~~  162 (198)
                      |..|..
T Consensus       414 LKYHr~  419 (423)
T COG5189         414 LKYHRK  419 (423)
T ss_pred             ceeccc
Confidence            888853

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.29  E-value=0.00018  Score=47.00  Aligned_cols=73  Identities=23%  Similarity=0.419  Sum_probs=21.4

Q ss_pred             cCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhc
Q psy11761         73 KCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFG  152 (198)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~  152 (198)
                      .|..|+..|.+...+..|+...++...   +.. ..+..             ...+..+....  ....+.|..|++.|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~---~~~-~~l~~-------------~~~~~~~~~~~--~~~~~~C~~C~~~f~   61 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDI---PDQ-KYLVD-------------PNRLLNYLRKK--VKESFRCPYCNKTFR   61 (100)
T ss_dssp             -------------------------------------------------------------------SSEEBSSSS-EES
T ss_pred             Ccccccccccccccccccccccccccc---ccc-ccccc-------------ccccccccccc--cCCCCCCCccCCCCc
Confidence            377788888877778888765554321   111 11112             33333333322  234799999999999


Q ss_pred             ChhHHHhhhhhh
Q psy11761        153 DRMNLISHHCHK  164 (198)
Q Consensus       153 ~~~~L~~H~~~~  164 (198)
                      +...|..|+..+
T Consensus        62 s~~~l~~Hm~~~   73 (100)
T PF12756_consen   62 SREALQEHMRSK   73 (100)
T ss_dssp             SHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCc
Confidence            999999999865

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.27  E-value=0.0003  Score=39.53  Aligned_cols=40  Identities=20%  Similarity=0.279  Sum_probs=26.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCC
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      .+.+.+...+.|..|++|+..+.+.-+|.+|+...|+.+|
T Consensus        13 ~~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   13 KKPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             ---CCCCTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hHHHHhhccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3444444457899999999999999999999999998886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.16  E-value=0.00038  Score=40.41  Aligned_cols=42  Identities=17%  Similarity=0.392  Sum_probs=34.6

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccccCCCcc
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGD  183 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~  183 (198)
                      .|.|++|++.| +...|..|....|...+..+.|++|....++
T Consensus         2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~   43 (54)
T PF05605_consen    2 SFTCPYCGKGF-SESSLVEHCEDEHRSESKNVVCPICSSRVTD   43 (54)
T ss_pred             CcCCCCCCCcc-CHHHHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence            58999999955 5669999999888777778999999976554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.04  E-value=0.0002  Score=33.71  Aligned_cols=21  Identities=43%  Similarity=0.762  Sum_probs=11.1

Q ss_pred             cCccchhcccCchhHHHhhhh
Q psy11761         73 KCDTCEKSFTNSQNLNTHQLI   93 (198)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~   93 (198)
                      .|+.|++.|.....|..|++.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHhH
Confidence            455555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>smart00355 ZnF_C2H2 zinc finger

Probab=96.90  E-value=0.00066  Score=32.48  Aligned_cols=24  Identities=25%  Similarity=0.632  Sum_probs=21.4

Q ss_pred             eeCCcchhhhcChhHHHhhhhhhC
Q psy11761        142 YQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      |+|+.|++.|.+...|..|+..|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999998653

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.82  E-value=0.00061  Score=33.37  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=13.2

Q ss_pred             eecCccccccCChhHHhhcccCCC
Q psy11761         44 HKCEYCHKVFDQQSSLLSHNCPQM   67 (198)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~h~   67 (198)
                      |.|..|++.|.....|..|++.|.
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCccCCccCChhHHHHHhHHhc
Confidence            455555555555555555555443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.62  E-value=0.00046  Score=45.06  Aligned_cols=77  Identities=21%  Similarity=0.374  Sum_probs=22.1

Q ss_pred             ecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcC
Q psy11761         45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT  124 (198)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~  124 (198)
                      +|..|+..|.....|..|+...++...-    ....+.....+..+.+.... ..+.|..|++.|.+             
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~-~~~~C~~C~~~f~s-------------   62 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVK-ESFRCPYCNKTFRS-------------   62 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESS-------------
T ss_pred             Cccccccccccccccccccccccccccc----cccccccccccccccccccC-CCCCCCccCCCCcC-------------
Confidence            4889999999999999998776653211    11111222233333332222 26899999999988             


Q ss_pred             cccccccccccccCC
Q psy11761        125 KSNLAQHSCMNSHFP  139 (198)
Q Consensus       125 ~~~l~~H~~~~~~~~  139 (198)
                      ...|..|++.+.+..
T Consensus        63 ~~~l~~Hm~~~~H~~   77 (100)
T PF12756_consen   63 REALQEHMRSKHHKK   77 (100)
T ss_dssp             HHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHcCccCCC
Confidence            888999998765433

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.57  E-value=0.001  Score=31.23  Aligned_cols=23  Identities=35%  Similarity=0.787  Sum_probs=11.5

Q ss_pred             ccCccchhcccCchhHHHhhhhc
Q psy11761         72 YKCDTCEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h   94 (198)
                      |.|+.|+..|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34555555555555555555543

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.53  E-value=0.0011  Score=51.62  Aligned_cols=25  Identities=36%  Similarity=0.946  Sum_probs=20.0

Q ss_pred             CCCCccCccchhcccCchhHHHhhh
Q psy11761         68 KPRPYKCDTCEKSFTNSQNLNTHQL   92 (198)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H~~   92 (198)
                      ..+||+|+.|++++.+...|.-|+.
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCCceeccccchhhccCccceeccc
Confidence            3589999999999988877766643

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.40  E-value=0.0019  Score=30.65  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=19.3

Q ss_pred             eeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        142 YQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      |+|+.|+.... ...|..|+..+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            68999999988 8899999998764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.23  E-value=0.0024  Score=30.52  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.5

Q ss_pred             eeCCcchhhhcChhHHHhhhhhh
Q psy11761        142 YQCDRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~~~  164 (198)
                      |.|++|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999998643

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.87  E-value=0.004  Score=30.47  Aligned_cols=22  Identities=27%  Similarity=0.730  Sum_probs=20.2

Q ss_pred             eeCCcchhhhcChhHHHhhhhh
Q psy11761        142 YQCDRCSQFFGDRMNLISHHCH  163 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~~  163 (198)
                      |.|+.|++.|.+...|..|+..
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.83  E-value=0.0079  Score=33.88  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             CCCCCccCccchhcccCchhHHHhhhhcCCCCc
Q psy11761         67 MKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (198)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (198)
                      ..+.|-.|++|+..++...+|.+|+...++.||
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            346677888888888888888888877776665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.45  E-value=0.011  Score=27.97  Aligned_cols=23  Identities=35%  Similarity=0.797  Sum_probs=14.6

Q ss_pred             ccCccchhcccCchhHHHhhhhc
Q psy11761         72 YKCDTCEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h   94 (198)
                      |.|+.|++.|.....+..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            35666666666666666666644

>PRK04860 hypothetical protein; Provisional

Probab=95.24  E-value=0.0095  Score=42.66  Aligned_cols=38  Identities=24%  Similarity=0.753  Sum_probs=31.6

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhc
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (198)
                      -+|.|. |+.   ....+..|.+++.++++|.|..|+..|..
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            368997 886   55668899999999999999999988764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.61  E-value=0.012  Score=27.99  Aligned_cols=22  Identities=36%  Similarity=0.792  Sum_probs=13.3

Q ss_pred             ccCccchhcccCchhHHHhhhh
Q psy11761         72 YKCDTCEKSFTNSQNLNTHQLI   93 (198)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~   93 (198)
                      |.|.+|+..|.+...+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            3466666666666666666554

>PRK04860 hypothetical protein; Provisional

Probab=94.48  E-value=0.013  Score=41.96  Aligned_cols=38  Identities=21%  Similarity=0.531  Sum_probs=33.2

Q ss_pred             ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCc
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNS   84 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   84 (198)
                      +|.|. |+.   ....+.+|.+++.++++|.|..|+..|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            68998 987   567789999999999999999999988654

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=94.25  E-value=0.046  Score=31.86  Aligned_cols=50  Identities=24%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CccccCcccchhhcccCCCceecCccccc-cCChhHHhhcccCCCCCCCccCccchh
Q psy11761         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKV-FDQQSSLLSHNCPQMKPRPYKCDTCEK   79 (198)
Q Consensus        24 ~~~~C~~C~~~f~~~~~~~~~~C~~C~~~-f~~~~~l~~H~~~h~~~~~~~C~~C~~   79 (198)
                      .+..|..||...........|.|+.||+. ..+-..-+      ....+|.|+.||.
T Consensus         6 ~~~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CR------k~~~~Y~CP~CGF   56 (59)
T PRK14890          6 EPPKCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCR------KQSNPYTCPKCGF   56 (59)
T ss_pred             cCccccCCCCcccCCCccCEeeCCCCCCeeEeechhHH------hcCCceECCCCCC
Confidence            45678888887766666678889999876 33222111      1135677777764

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.18  E-value=0.056  Score=44.34  Aligned_cols=62  Identities=29%  Similarity=0.535  Sum_probs=52.9

Q ss_pred             ceecCccccccCChhHHhhccc--CCCCC--CCccCc--cchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNC--PQMKP--RPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      ++.|..|...|.....+..|..  .|.++  +++.|+  .|++.|.....+..|...|.+..++.+..
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL  356 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence            5778889999999999999988  78888  899999  79999999888889999888877766644

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.05  E-value=0.034  Score=26.66  Aligned_cols=20  Identities=25%  Similarity=0.464  Sum_probs=16.8

Q ss_pred             eeCCcchhhhcChhHHHhhhh
Q psy11761        142 YQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      ..|+.||+.| ..+.|.+|..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            4799999999 6668999975

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=94.00  E-value=0.042  Score=31.98  Aligned_cols=50  Identities=24%  Similarity=0.424  Sum_probs=32.4

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCChhHHhhcccCCCCCCCccCccchh
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEK   79 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   79 (198)
                      +-.|..||...........|.|+.||+..-....--     .....+|.|+.||.
T Consensus         9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~C-----Rk~g~~Y~Cp~CGF   58 (61)
T COG2888           9 PPVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKC-----RKLGNPYRCPKCGF   58 (61)
T ss_pred             CceeccCCCEeccCCceeEeeCCCCCceeeehhhhH-----HHcCCceECCCcCc
Confidence            457888998876667777889999986533322211     11235788888764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.94  E-value=0.021  Score=27.81  Aligned_cols=21  Identities=33%  Similarity=0.857  Sum_probs=11.3

Q ss_pred             ccCccchhcccCchhHHHhhh
Q psy11761         72 YKCDTCEKSFTNSQNLNTHQL   92 (198)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~   92 (198)
                      |.|..|++.|.+...+..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            345555555555555555544

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.77  E-value=0.022  Score=26.81  Aligned_cols=23  Identities=39%  Similarity=0.681  Sum_probs=13.5

Q ss_pred             ccCccchhcccCchhHHHhhhhcC
Q psy11761         72 YKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      |.|+.|+.... ...|..|++.+.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45777776666 666777766543

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=93.50  E-value=0.046  Score=30.40  Aligned_cols=29  Identities=31%  Similarity=0.695  Sum_probs=21.4

Q ss_pred             ccccCcccchhhcccCCCceecCcccccc
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVF   53 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f   53 (198)
                      .|.|+.||..|.-........|+.||..+
T Consensus         3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEYGTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCCCCceECCCCCCeE
Confidence            57888888877665555578888887654

>KOG2231|consensus

Probab=93.33  E-value=0.066  Score=46.54  Aligned_cols=120  Identities=23%  Similarity=0.396  Sum_probs=60.1

Q ss_pred             cccCcccchhhcccCCCceecCccccccCChhHHhhcccCCCCCCCccCccch---hcc------cCchhHHHhhhhcCC
Q psy11761         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCE---KSF------TNSQNLNTHQLIHSG   96 (198)
Q Consensus        26 ~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~---~~f------~~~~~l~~H~~~h~~   96 (198)
                      +.|..|++.+...  .....|..| ..|.....|..|+...|.  -+.|..|-   +.|      -....|..|++....
T Consensus       100 ~~C~~C~~~~~~~--~~~~~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~  174 (669)
T KOG2231|consen  100 HSCHICDRRFRAL--YNKKECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP  174 (669)
T ss_pred             hhcCccccchhhh--cccCCCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCC
Confidence            4577777765321  112346666 666677788888755442  33343332   122      223556666654322


Q ss_pred             -CC----cccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeC---CcchhhhcChhHHHhhhhhhC
Q psy11761         97 -IR----PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC---DRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus        97 -~k----~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C---~~C~k~f~~~~~L~~H~~~~~  165 (198)
                       ++    --.|..|...|..             ...|.+|++..+.  --.-|   +.++.-|.....|..|.+..|
T Consensus       175 d~~s~rGhp~C~~C~~~fld-------------~~el~rH~~~~h~--~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  175 DDESCRGHPLCKFCHERFLD-------------DDELYRHLRFDHE--FCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ccccccCCccchhhhhhhcc-------------HHHHHHhhcccee--heeecCcccccchhcccchHHHHHhhhcC
Confidence             11    1366677777766             5556666654441  11112   112344444555555555444

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.25  E-value=0.047  Score=31.28  Aligned_cols=29  Identities=28%  Similarity=0.484  Sum_probs=25.8

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      |+.-+.|+.||..|....++.+|....|+
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            67788999999999999999999987765

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.03  E-value=0.072  Score=27.46  Aligned_cols=23  Identities=22%  Similarity=0.509  Sum_probs=20.4

Q ss_pred             CCeeCCcchhhhcChhHHHhhhh
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      .+|.|+.|++.|.....+..|+.
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHC
Confidence            36889999999999999999975

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893|consensus

Probab=91.89  E-value=0.055  Score=40.79  Aligned_cols=44  Identities=30%  Similarity=0.736  Sum_probs=35.4

Q ss_pred             ecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhh
Q psy11761         45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL   92 (198)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   92 (198)
                      +|..|+..|....-|+.|++.    +-|+|-+|.+.+-+-..|..|..
T Consensus        12 wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcm   55 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCM   55 (341)
T ss_pred             eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehh
Confidence            588899999999888888875    44889999888777777777743

>KOG2893|consensus

Probab=91.80  E-value=0.03  Score=42.14  Aligned_cols=48  Identities=27%  Similarity=0.477  Sum_probs=38.2

Q ss_pred             cCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        101 KCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       101 ~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      =|..|.+.|..             ..-|.+|++     .+-|+|.+|.|..-+-..|..|....|+
T Consensus        12 wcwycnrefdd-------------ekiliqhqk-----akhfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   12 WCWYCNREFDD-------------EKILIQHQK-----AKHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeeecccccch-------------hhhhhhhhh-----hccceeeeehhhhccCCCceeehhhhhh
Confidence            38899999998             888888884     4678999998877666688888665554

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.74  E-value=0.12  Score=42.40  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=62.2

Q ss_pred             CcccCCcCchhhhcccCCCcccCCCcCccccccccc--ccccCC--CCeeCC--cchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761         98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC--MNSHFP--KPYQCD--RCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus        98 k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~--~~~~~~--~~~~C~--~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      .++.|..|...|..             ...+.+|.+  .|. ++  +++.|+  .|++.|.+...+..|..+|.+..+..
T Consensus       288 ~~~~~~~~~~~~s~-------------~~~l~~~~~~~~h~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (467)
T COG5048         288 LPIKSKQCNISFSR-------------SSPLTRHLRSVNHS-GESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAK  353 (467)
T ss_pred             cCCCCccccCCccc-------------cccccccccccccc-cccCCceeeeccCCCccccccccccCCcccccCCCccc
Confidence            46788889988888             888999999  566 78  999999  79999999999999999999888777


Q ss_pred             cccccccCCCcccch
Q psy11761        172 FISRLFGFDDGDKVA  186 (198)
Q Consensus       172 ~~~~~~~~~~~~~~~  186 (198)
                      +.-..+.........
T Consensus       354 ~~~~~~~~~~~~~~~  368 (467)
T COG5048         354 EKLLNSSSKFSPLLN  368 (467)
T ss_pred             cccccCccccccccC
Confidence            777766666555444

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=91.18  E-value=0.13  Score=32.50  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=27.0

Q ss_pred             CccccCcccchhhcccCCCceecCccccccCCh
Q psy11761         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (198)
Q Consensus        24 ~~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~   56 (198)
                      ..|.||.|++.--.......|.|.-|+..|.-.
T Consensus        34 ~~~~Cp~C~~~~VkR~a~GIW~C~kCg~~fAGg   66 (89)
T COG1997          34 AKHVCPFCGRTTVKRIATGIWKCRKCGAKFAGG   66 (89)
T ss_pred             cCCcCCCCCCcceeeeccCeEEcCCCCCeeccc
Confidence            368999999986667777799999999988553

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=91.09  E-value=0.16  Score=24.02  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=9.4

Q ss_pred             cccchhhcccCCCceecCccc
Q psy11761         30 QCQRLIFLSANAGVHKCEYCH   50 (198)
Q Consensus        30 ~C~~~f~~~~~~~~~~C~~C~   50 (198)
                      .|+...........|.|+.||
T Consensus         3 sC~~~i~~r~~~v~f~CPnCG   23 (24)
T PF07754_consen    3 SCGRPIAPREQAVPFPCPNCG   23 (24)
T ss_pred             cCCCcccCcccCceEeCCCCC
Confidence            344443333334455555554

It is likely to bind zinc via its four well-conserved cysteine residues.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=90.93  E-value=0.13  Score=26.43  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=13.1

Q ss_pred             cccCcccchhhcccCCCceecCcccc
Q psy11761         26 YKCHQCQRLIFLSANAGVHKCEYCHK   51 (198)
Q Consensus        26 ~~C~~C~~~f~~~~~~~~~~C~~C~~   51 (198)
                      |.|..||..+...  ..++.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~--~~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGE--EAPWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCC--cCCCcCcCCCC
Confidence            4566666655332  24566666654

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=90.77  E-value=0.19  Score=24.30  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=14.0

Q ss_pred             ccCcccchhhcccCCCceecCccccccC
Q psy11761         27 KCHQCQRLIFLSANAGVHKCEYCHKVFD   54 (198)
Q Consensus        27 ~C~~C~~~f~~~~~~~~~~C~~C~~~f~   54 (198)
                      .||.|+.......    -.|+.||..|.
T Consensus         2 ~CP~C~~~V~~~~----~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPESA----KFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchhhc----CcCCCCCCCCc
Confidence            3677776653332    34777777664

Several members are annotated as putative helicases.

>KOG1146|consensus

Probab=90.43  E-value=0.18  Score=46.84  Aligned_cols=97  Identities=21%  Similarity=0.285  Sum_probs=58.2

Q ss_pred             cccccCChhHHhhccc-CCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCccc
Q psy11761         49 CHKVFDQQSSLLSHNC-PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN  127 (198)
Q Consensus        49 C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~  127 (198)
                      |+..+.....+..|.. .+...+.+.|+.|+..+.....|..|+|+.+.+-.-  ..|. .+..             ...
T Consensus       442 ~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c~-~gq~-------------~~~  505 (1406)
T KOG1146|consen  442 AEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYCK-AGQN-------------HPR  505 (1406)
T ss_pred             hhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch--hHhH-hccc-------------ccc
Confidence            4444444444444422 344457789999999999888999998875543211  2221 1111             001


Q ss_pred             ccccccccccCCCCeeCCcchhhhcChhHHHhhhh
Q psy11761        128 LAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus       128 l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      +.+-..... +.++|.|..|...++...+|..|+.
T Consensus       506 ~arg~~~~~-~~~p~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  506 LARGEVYRC-PGKPYPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             ccccccccC-CCCcccceeeeeeeecchHHHHHHH
Confidence            111111111 4689999999999999999999975

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.15  E-value=0.18  Score=33.59  Aligned_cols=30  Identities=23%  Similarity=0.624  Sum_probs=24.6

Q ss_pred             ccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcCh
Q psy11761        100 FKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDR  154 (198)
Q Consensus       100 ~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~  154 (198)
                      ..|+.||..|..             .            +..|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYD-------------L------------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYD-------------L------------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhcc-------------C------------CCCCccCCCCCCccCcc
Confidence            699999999976             2            35788999999998655

The function of members of this family is unknown.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=89.92  E-value=0.16  Score=26.25  Aligned_cols=12  Identities=17%  Similarity=0.484  Sum_probs=9.5

Q ss_pred             cccCCcCchhhh
Q psy11761         99 PFKCTTCDKSFV  110 (198)
Q Consensus        99 ~~~C~~C~~~f~  110 (198)
                      .|+|..||..+.
T Consensus         2 ~~~C~~CG~i~~   13 (34)
T cd00729           2 VWVCPVCGYIHE   13 (34)
T ss_pred             eEECCCCCCEeE
Confidence            478999997764

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.12  E-value=0.18  Score=38.01  Aligned_cols=15  Identities=13%  Similarity=0.348  Sum_probs=11.4

Q ss_pred             CccccCcccchhhcc
Q psy11761         24 NAYKCHQCQRLIFLS   38 (198)
Q Consensus        24 ~~~~C~~C~~~f~~~   38 (198)
                      +.+.||+|++.|...
T Consensus         4 k~~~CPvC~~~F~~~   18 (214)
T PF09986_consen    4 KKITCPVCGKEFKTK   18 (214)
T ss_pred             CceECCCCCCeeeee
Confidence            457788888888764

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=89.02  E-value=0.27  Score=32.82  Aligned_cols=30  Identities=17%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             cccCcccchhhcccCCCceecCccccccCCh
Q psy11761         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (198)
Q Consensus        26 ~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~   56 (198)
                      -.|+.||+.|---.. .|..|+.||..|.-.
T Consensus        10 R~Cp~CG~kFYDLnk-~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLNK-DPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCCC-CCccCCCCCCccCcc
Confidence            358888888866554 678888888887665

The function of members of this family is unknown.

>PF14369 zf-RING_3: zinc-finger

Probab=88.85  E-value=0.26  Score=25.71  Aligned_cols=30  Identities=33%  Similarity=0.817  Sum_probs=16.9

Q ss_pred             ccccCcccchhhcccCCCce-ecCccccccC
Q psy11761         25 AYKCHQCQRLIFLSANAGVH-KCEYCHKVFD   54 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~-~C~~C~~~f~   54 (198)
                      .|.|..|.+.+........- .|+.|+.+|.
T Consensus         2 ~ywCh~C~~~V~~~~~~~~~~~CP~C~~gFv   32 (35)
T PF14369_consen    2 RYWCHQCNRFVRIAPSPDSDVACPRCHGGFV   32 (35)
T ss_pred             CEeCccCCCEeEeCcCCCCCcCCcCCCCcEe
Confidence            46777777666543222222 4777776663

>KOG4173|consensus

Probab=88.51  E-value=0.11  Score=38.27  Aligned_cols=81  Identities=22%  Similarity=0.420  Sum_probs=54.8

Q ss_pred             CCccCcc--chhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCccccccccccccc---------C
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH---------F  138 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~---------~  138 (198)
                      ..+.|++  |-..|.+.-.+..|..+-++.   .|.+|.+.|++             ..-|..|+...+.         |
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt-------------~hLLd~HI~E~HDs~Fqa~veRG  141 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPT-------------GHLLDAHILEWHDSLFQALVERG  141 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCc-------------hhhhhHHHHHHHHHHHHHHHHcC
Confidence            3466766  666777766677776655543   78888888887             5555556543331         3


Q ss_pred             CCCeeCC--cchhhhcChhHHHhhhhhhCC
Q psy11761        139 PKPYQCD--RCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       139 ~~~~~C~--~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ...|+|-  .|+..|.+...-..|+...|.
T Consensus       142 ~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  142 QDMYQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             ccHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            5568884  499999888888888876653

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=88.11  E-value=0.31  Score=26.86  Aligned_cols=27  Identities=26%  Similarity=0.559  Sum_probs=16.8

Q ss_pred             ccccCcccchhhcccCCCceecCccccc
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKV   52 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~   52 (198)
                      .|.|..||..|... ...+..|+.||..
T Consensus         2 ~Y~C~~Cg~~~~~~-~~~~irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK-SKDVVRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC-CCCceECCCCCce
Confidence            36677777766554 3446677777654

present in RNA polymerase I, II and III

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=87.95  E-value=0.18  Score=32.25  Aligned_cols=31  Identities=29%  Similarity=0.684  Sum_probs=25.1

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCC
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~   55 (198)
                      .|.|+.||+.--.......|.|..|+..|.-
T Consensus        35 ky~Cp~Cgk~~vkR~a~GIW~C~~C~~~~AG   65 (90)
T PF01780_consen   35 KYTCPFCGKTSVKRVATGIWKCKKCGKKFAG   65 (90)
T ss_dssp             -BEESSSSSSEEEEEETTEEEETTTTEEEE-
T ss_pred             CCcCCCCCCceeEEeeeEEeecCCCCCEEeC
Confidence            7999999998777777778999999988743

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=87.79  E-value=0.25  Score=27.82  Aligned_cols=29  Identities=31%  Similarity=0.708  Sum_probs=21.4

Q ss_pred             CccccCcccchhhcccCCCceecCccccc
Q psy11761         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKV   52 (198)
Q Consensus        24 ~~~~C~~C~~~f~~~~~~~~~~C~~C~~~   52 (198)
                      ..|.|-.||+.|..........|+.||..
T Consensus         5 ~~Y~C~~Cg~~~~~~~~~~~irCp~Cg~r   33 (49)
T COG1996           5 MEYKCARCGREVELDQETRGIRCPYCGSR   33 (49)
T ss_pred             EEEEhhhcCCeeehhhccCceeCCCCCcE
Confidence            45888888888865666667788888764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.30  E-value=0.54  Score=37.61  Aligned_cols=85  Identities=27%  Similarity=0.461  Sum_probs=51.3

Q ss_pred             ccCcc--chhcccCchhHHHhhhhcCCCCcccCCcCc---hhhhcccCCCcccCCCcCccccccccccccc--CCC-Cee
Q psy11761         72 YKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCD---KSFVNQINPTSTHTPTYTKSNLAQHSCMNSH--FPK-PYQ  143 (198)
Q Consensus        72 ~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~---~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~--~~~-~~~  143 (198)
                      |.|+.  |.........|..|.+..++.  +.|.+|-   +.|..+..+       ...+.|..|...-..  |-+ --.
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~l-------F~~~~Lr~H~~~G~~e~GFKGHP~  222 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRL-------FRSSTLRDHKNGGLEEEGFKGHPL  222 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceee-------eecccccccccCCccccCcCCCch
Confidence            67765  555555566788898877764  5777663   344432211       013344444432211  111 236


Q ss_pred             CCcchhhhcChhHHHhhhhhhC
Q psy11761        144 CDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       144 C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      |.+|..-|-....|..|++..|
T Consensus       223 C~FC~~~FYdDDEL~~HcR~~H  244 (493)
T COG5236         223 CIFCKIYFYDDDELRRHCRLRH  244 (493)
T ss_pred             hhhccceecChHHHHHHHHhhh
Confidence            9999999999999999998766

>KOG2231|consensus

Probab=85.94  E-value=0.51  Score=41.27  Aligned_cols=82  Identities=27%  Similarity=0.446  Sum_probs=49.8

Q ss_pred             CccchhcccCchhHHHhhhhcCCCCcccCCcCc---hhhhcccCCCcccCCCcCcccccccccccccCCC---C-eeCCc
Q psy11761         74 CDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD---KSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPK---P-YQCDR  146 (198)
Q Consensus        74 C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~---~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~---~-~~C~~  146 (198)
                      |..| ..|.....|..|+...++  .+.|..|-   +.|..+..+       .....|..|+....++++   . -.|..
T Consensus       118 ~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~-------Yt~~el~~h~~~gd~d~~s~rGhp~C~~  187 (669)
T KOG2231|consen  118 CLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKL-------YTRAELNLHLMFGDPDDESCRGHPLCKF  187 (669)
T ss_pred             Cccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeeh-------ehHHHHHHHHhcCCCccccccCCccchh
Confidence            3344 344466788899865442  24554442   223222111       115677777776554322   2 47999


Q ss_pred             chhhhcChhHHHhhhhhhC
Q psy11761        147 CSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       147 C~k~f~~~~~L~~H~~~~~  165 (198)
                      |...|-....|.+|++..|
T Consensus       188 C~~~fld~~el~rH~~~~h  206 (669)
T KOG2231|consen  188 CHERFLDDDELYRHLRFDH  206 (669)
T ss_pred             hhhhhccHHHHHHhhccce
Confidence            9999999999999998775

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=85.92  E-value=0.56  Score=23.90  Aligned_cols=25  Identities=24%  Similarity=0.604  Sum_probs=12.8

Q ss_pred             cccCcccchhhcccCCCceecCcccc
Q psy11761         26 YKCHQCQRLIFLSANAGVHKCEYCHK   51 (198)
Q Consensus        26 ~~C~~C~~~f~~~~~~~~~~C~~C~~   51 (198)
                      |.|..||..+..+ ...+-+|+.||.
T Consensus         1 Y~C~~Cg~~~~~~-~~~~irC~~CG~   25 (32)
T PF03604_consen    1 YICGECGAEVELK-PGDPIRCPECGH   25 (32)
T ss_dssp             EBESSSSSSE-BS-TSSTSSBSSSS-
T ss_pred             CCCCcCCCeeEcC-CCCcEECCcCCC
Confidence            4566666666532 233556666654

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.51  E-value=0.48  Score=35.73  Aligned_cols=14  Identities=29%  Similarity=0.847  Sum_probs=12.0

Q ss_pred             CcccCCcCchhhhc
Q psy11761         98 RPFKCTTCDKSFVN  111 (198)
Q Consensus        98 k~~~C~~C~~~f~~  111 (198)
                      +...||+|++.|..
T Consensus         4 k~~~CPvC~~~F~~   17 (214)
T PF09986_consen    4 KKITCPVCGKEFKT   17 (214)
T ss_pred             CceECCCCCCeeee
Confidence            56799999999987

>TIGR00622 ssl1 transcription factor ssl1

Probab=85.47  E-value=1.8  Score=29.02  Aligned_cols=102  Identities=16%  Similarity=0.281  Sum_probs=59.1

Q ss_pred             cccCcccchhhcccCCCceecCccccccCChhHHhhcccCCC--CCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQM--KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        26 ~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      |.||.|+...    =..|-.|+.|+...-....|++-.  |+  ..++|.         ... +.      .....-.|-
T Consensus         2 Y~CPrC~skv----C~LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~---------ev~-~~------~~~~~~~C~   59 (112)
T TIGR00622         2 YFCPQCRAKV----CELPVECPICGLTLILSTHLARSY--HHLFPLKAFQ---------EIP-LE------EYNGSRFCF   59 (112)
T ss_pred             ccCCCCCCCc----cCCCCcCCcCCCEEeccchHHHhh--hccCCCcccc---------ccc-cc------ccCCCCccc
Confidence            7788887543    123677999998887777776432  33  122221         000 00      011113588


Q ss_pred             cCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        104 TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       104 ~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      .|...|+.             ......-.  .. ....|+|+.|...|--.-+.-.|-.+|.
T Consensus        60 ~C~~~f~~-------------~~~~~~~~--~~-~~~~y~C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        60 GCQGPFPK-------------PPVSPFDE--LK-DSHRYVCAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             CcCCCCCC-------------cccccccc--cc-cccceeCCCCCCccccccchhhhhhccC
Confidence            89888875             21100000  11 3468999999999988888888876663

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=85.43  E-value=1.2  Score=29.61  Aligned_cols=27  Identities=19%  Similarity=0.496  Sum_probs=24.5

Q ss_pred             CCeeC----CcchhhhcChhHHHhhhhhhCC
Q psy11761        140 KPYQC----DRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       140 ~~~~C----~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ..|.|    ..|+....+...+..|...+||
T Consensus        79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            56899    9999999999999999998875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=85.06  E-value=0.47  Score=34.15  Aligned_cols=25  Identities=20%  Similarity=0.545  Sum_probs=20.6

Q ss_pred             CcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchh
Q psy11761         98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQ  149 (198)
Q Consensus        98 k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k  149 (198)
                      +-|+|++||..+.                           |+-|-+||+||.
T Consensus       133 ~~~vC~vCGy~~~---------------------------ge~P~~CPiCga  157 (166)
T COG1592         133 KVWVCPVCGYTHE---------------------------GEAPEVCPICGA  157 (166)
T ss_pred             CEEEcCCCCCccc---------------------------CCCCCcCCCCCC
Confidence            3699999998864                           577889999994

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=85.01  E-value=0.42  Score=30.59  Aligned_cols=33  Identities=21%  Similarity=0.535  Sum_probs=26.1

Q ss_pred             CccccCcccchhhcccCCCceecCccccccCCh
Q psy11761         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (198)
Q Consensus        24 ~~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~   56 (198)
                      ..|.|+.|++.--.......|.|..|+..|.-.
T Consensus        35 a~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGG   67 (90)
T PTZ00255         35 AKYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGG   67 (90)
T ss_pred             CCccCCCCCCCceeeeeeEEEEcCCCCCEEeCC
Confidence            379999999865556666799999999987553

>TIGR00280 L37a ribosomal protein L37a

Probab=84.25  E-value=0.42  Score=30.65  Aligned_cols=32  Identities=22%  Similarity=0.577  Sum_probs=26.0

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCCh
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~   56 (198)
                      .|.|+.|++.--.......|.|..|+..|.-.
T Consensus        35 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGG   66 (91)
T TIGR00280        35 KYVCPFCGKKTVKRGSTGIWTCRKCGAKFAGG   66 (91)
T ss_pred             CccCCCCCCCceEEEeeEEEEcCCCCCEEeCC
Confidence            79999999876666667799999999987553

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PF14353 CpXC: CpXC protein

Probab=84.17  E-value=0.33  Score=33.35  Aligned_cols=40  Identities=20%  Similarity=0.368  Sum_probs=25.5

Q ss_pred             ccCcccchhhcccC-------------------CCceecCccccccCChhHHhhcccCC
Q psy11761         27 KCHQCQRLIFLSAN-------------------AGVHKCEYCHKVFDQQSSLLSHNCPQ   66 (198)
Q Consensus        27 ~C~~C~~~f~~~~~-------------------~~~~~C~~C~~~f~~~~~l~~H~~~h   66 (198)
                      .||.|+..|....-                   +-.+.|+.||..|.-...+..|...+
T Consensus         3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~   61 (128)
T PF14353_consen    3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPEK   61 (128)
T ss_pred             CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCCC
Confidence            68888877653211                   11567888888877766666665443

>TIGR00622 ssl1 transcription factor ssl1

Probab=84.15  E-value=1.2  Score=29.73  Aligned_cols=71  Identities=18%  Similarity=0.368  Sum_probs=43.2

Q ss_pred             CCccccCcccchhhcccCCC----------ce------------ecCccccccCChhHHhhcccCCCCCCCccCccchhc
Q psy11761         23 DNAYKCHQCQRLIFLSANAG----------VH------------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKS   80 (198)
Q Consensus        23 ~~~~~C~~C~~~f~~~~~~~----------~~------------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   80 (198)
                      +.|..|+.||-..-....|.          +|            .|.-|...|........  ..-.....|.|+.|...
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~   90 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHRYVCAVCKNV   90 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccccceeCCCCCCc
Confidence            46788888885543333322          22            37778887765431110  00223457889999999


Q ss_pred             ccCchhHHHhhhhcC
Q psy11761         81 FTNSQNLNTHQLIHS   95 (198)
Q Consensus        81 f~~~~~l~~H~~~h~   95 (198)
                      |-..-++..|...|.
T Consensus        91 FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        91 FCVDCDVFVHESLHC  105 (112)
T ss_pred             cccccchhhhhhccC
Confidence            988888888865554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1146|consensus

Probab=83.96  E-value=0.5  Score=44.13  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=55.3

Q ss_pred             eecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCc
Q psy11761         44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTY  123 (198)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~  123 (198)
                      +.|..|...+...-.+. ++-   ....|.|..|...|.....+..|.+           .|.+.+..            
T Consensus      1261 ~~c~~~~~~~~~~~~~~-~l~---~~~~~~~~~~~~~~~~~~~l~~~~~-----------k~~~~~~~------------ 1313 (1406)
T KOG1146|consen 1261 GECGAVDELLTPSFGIS-TLD---VTHRYLCRQCKMAFDGEAPLTAHQR-----------KFCFAGRG------------ 1313 (1406)
T ss_pred             chhhhccccccCcccee-ecc---cchhHHHHHHHhhhcchhHHHHHHH-----------HHHhccCc------------
Confidence            45555555554444333 221   1235666666666666665555551           12222222            


Q ss_pred             CcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        124 TKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       124 ~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                       .....-+...+. .-+.| |..|...|.....|..||+..+++.-.++.
T Consensus      1314 -~~~~~~~~l~~~-d~~~~-c~~c~~~~~~~~alqihm~~~~~~~kt~~~ 1360 (1406)
T KOG1146|consen 1314 -SGGSMPPPLRVP-DCTYH-CLACEVLLSGREALQIHMRSSAHRRKTAPP 1360 (1406)
T ss_pred             -cccCCCCcccCc-ccccc-chHHHhhcchhHHHHHHHHHhhhcccCCCC
Confidence             222333443333 44566 999999999999999999855444333444

>KOG2186|consensus

Probab=83.87  E-value=0.43  Score=36.42  Aligned_cols=47  Identities=21%  Similarity=0.460  Sum_probs=39.5

Q ss_pred             cccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhh
Q psy11761         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      -|.|..||....              +..+.+|+...+ + .-|-|-.|++.|.. .++.-|..
T Consensus         3 ~FtCnvCgEsvK--------------Kp~vekH~srCr-n-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVK--------------KPQVEKHMSRCR-N-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhcc--------------ccchHHHHHhcc-C-CeeEEeeccccccc-chhhhhhh
Confidence            378999999987              788899999887 3 78899999999987 57777754

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=83.28  E-value=0.55  Score=25.04  Aligned_cols=26  Identities=19%  Similarity=0.603  Sum_probs=12.6

Q ss_pred             cccCcccchhhcccC---CCceecCcccc
Q psy11761         26 YKCHQCQRLIFLSAN---AGVHKCEYCHK   51 (198)
Q Consensus        26 ~~C~~C~~~f~~~~~---~~~~~C~~C~~   51 (198)
                      |.|+.||..|.....   ...-.|+.||.
T Consensus         6 y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~   34 (41)
T smart00834        6 YRCEDCGHTFEVLQKISDDPLATCPECGG   34 (41)
T ss_pred             EEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence            556666665543221   22344666654

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed

Probab=82.02  E-value=0.55  Score=30.06  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=26.1

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCCh
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~   56 (198)
                      .|.|+.|++.--.......|.|..|+..|.-.
T Consensus        36 ~y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGG   67 (90)
T PRK03976         36 KHVCPVCGRPKVKRVGTGIWECRKCGAKFAGG   67 (90)
T ss_pred             CccCCCCCCCceEEEEEEEEEcCCCCCEEeCC
Confidence            79999999876666777799999999987543

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=82.01  E-value=0.59  Score=25.37  Aligned_cols=11  Identities=27%  Similarity=0.893  Sum_probs=5.6

Q ss_pred             cccCcccchhh
Q psy11761         26 YKCHQCQRLIF   36 (198)
Q Consensus        26 ~~C~~C~~~f~   36 (198)
                      |.|..||..|.
T Consensus         6 y~C~~Cg~~fe   16 (42)
T PF09723_consen    6 YRCEECGHEFE   16 (42)
T ss_pred             EEeCCCCCEEE
Confidence            45555554443

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=81.60  E-value=0.84  Score=31.12  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=25.6

Q ss_pred             ccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHH
Q psy11761        100 FKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNL  157 (198)
Q Consensus       100 ~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L  157 (198)
                      ..|+.||+.|..             .            +..|..|+.||..|.-...+
T Consensus        10 r~Cp~cg~kFYD-------------L------------nk~p~vcP~cg~~~~~~~~~   42 (129)
T TIGR02300        10 RICPNTGSKFYD-------------L------------NRRPAVSPYTGEQFPPEEAL   42 (129)
T ss_pred             ccCCCcCccccc-------------c------------CCCCccCCCcCCccCcchhh
Confidence            699999999875             2            45789999999998655333

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		5e-13
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		3e-10
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		4e-09
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		4e-10
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		6e-09
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-08
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		3e-04
2cot_A	77	Solution Structure Of The First And Second Zf-C2h2		7e-08
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		9e-08
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		2e-07
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		3e-07
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		1e-06
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		5e-04
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-06
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		1e-06
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-06
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-06
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		2e-06
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		2e-06
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		3e-06
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		5e-06
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		7e-06
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		7e-06
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		7e-06
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		8e-06
1x6e_A	72	Solution Structures Of The C2h2 Type Zinc Finger Do		1e-05
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		3e-05
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		3e-05
2gli_A	155	Five-Finger GliDNA COMPLEX Length = 155		1e-04
2ena_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		1e-04
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		2e-04
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		3e-04
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		4e-04
2eq1_A	46	Solution Structure Of The 9th C2h2 Type Zinc Finger		4e-04
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		5e-04
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		6e-04
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		6e-04
2eml_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		7e-04
2ep3_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04
2ep0_A	46	Solution Structure Of The C2h2 Type Zinc Finger (Re		8e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 24/152 (15%)
Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
            H  +  YKC +C +      +   H          KC  C K F Q+++L +H      
Sbjct: 43  THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG 102
Query: 69  PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNL 128
            +PY C  C KSF+   +L  HQ  H+G +P+KC  C KSF  + N   TH  T+T    
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDN-LHTHQRTHTGE-- 159
Query: 129 AQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
                      KPY+C  C + F  R  L  H
Sbjct: 160 -----------KPYKCPECGKSFSRRDALNVH 180

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +KC  C K F Q S+L  H       +PYKC  C KSF+ S +L  HQ  H+G +P+KC 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 104 TCDKSF 109
            C KSF
Sbjct: 65  ECGKSF 70

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           +PYKC  C KSF+ S NL  HQ  H+G +P+KC  C KSF +Q +    H  T+T     
Sbjct: 3   KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSF-SQSSDLQKHQRTHTGE--- 58
Query: 130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
                     KPY+C  C + F    +L  H
Sbjct: 59  ----------KPYKCPECGKSFSRSDHLSRH 79

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 38  SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
           S ++G HKCE C K F ++  L +H       +PYKC TC+ +  +S +LN H  IHS  
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 98  RPFKCTTC 105
           RPFKC  C
Sbjct: 63  RPFKCQIC 70

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 20/122 (16%)
Query: 46  CEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFK 101
           C Y  C+K + + S L  H+      +PY+CD   CE+ F+ S  L  HQ  H+G++PF+
Sbjct: 9   CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 102 CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD--RCSQFFGDRMNLIS 159
           C TC + F       S H  T+T+++  +         KP+ C    C + F     L+ 
Sbjct: 69  CKTCQRKFSR-----SDHLKTHTRTHTGE---------KPFSCRWPSCQKKFARSDELVR 114
Query: 160 HH 161
           HH
Sbjct: 115 HH 116

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 46  CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
           C++C + F +  +LL H       RPY CD C K+F    +L  H+ IHS  +PFKC  C
Sbjct: 20  CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 106 DKSF 109
            K F
Sbjct: 80  GKGF 83

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 65  PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT 124
           P    + + C  C + FT S NL  H+  H+  RP+ C  C K+F  Q            
Sbjct: 11  PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ------------ 58
Query: 125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
             +L  H  ++S   KP++C  C + F     L  H
Sbjct: 59  -DHLRDHRYIHSK-EKPFKCQECGKGFCQSRTLAVH 92

>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain Of Zinc Finger Protein 435 Length = 77

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 66  QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQ 112
           Q + R YKCD C KSF++S +L+ H+  H+G +P+KC  C K+F+ +
Sbjct: 13  QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 72  YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
           + C  C KSF  S  L+TH LIHS  RP+ C  C K F             + KS++ +H
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-------------HQKSDMKKH 48
Query: 132 SCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
           + +++   KP++C  C + F    NLI+H
Sbjct: 49  TFIHT-GEKPHKCQVCGKAFSQSSNLITH 76

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 49  CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCD 106
           C K+F   S++  H      PR + C  C K+F  S  L  HQL+H+G +PF+CT   C 
Sbjct: 13  CTKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC--DRCSQFFGDRMNLISH 160
           K F    N   TH   +T               +PY C  D C++ F    NL SH
Sbjct: 72  KRFSLDFN-LRTHVRIHTGD-------------RPYVCPFDGCNKKFAQSTNLKSH 113

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 43  VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIR 98
           +H C+Y  C KV+ + S L +H       +PYKC  + C+  F  S  L  H   H+G +
Sbjct: 15  IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 99  PFKCTTCDKSF 109
           PF+C  C++SF
Sbjct: 75  PFQCGVCNRSF 85

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 49  CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKS 108
           C K F  +S    H    +  RPY C  C K F    +L  H  IH+GI+P++C  C K 
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 109 FV 110
           F+
Sbjct: 75  FM 76

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 77  CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS 136
           C KSFT+    + H  +H G+RP+ C  C K F               K +L  H  +++
Sbjct: 15  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK-------------MKHHLVGHMKIHT 61
Query: 137 HFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSC 169
              KPY+C+ C++ F  R +      H+H  SC
Sbjct: 62  GI-KPYECNICAKRFMWRDSF-----HRHVTSC 88

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 38  SANAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLI 93
            +    H C+Y  C K + + S L +H       +PY CD   C   F  S  L  H   
Sbjct: 1   GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 94  HSGIRPFKCTTCDKSF 109
           H+G RPF+C  CD++F
Sbjct: 61  HTGHRPFQCQKCDRAF 76

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F++S NL  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+   NL+TH  IH+G +PF+C  C ++F  Q +  + H  T+T   
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQAS-LNAHIRTHTGE- 60
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
                       KP+ CD C + F 
Sbjct: 61  ------------KPFACDICGRKFA 73

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 26/90 (28%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+   NL+TH  IH+G +PF+C  C ++F                  
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF------------------ 44
Query: 128 LAQHSCMNSHF-----PKPYQCDRCSQFFG 152
            +QH+ +N H       KP+ CD C + F 
Sbjct: 45  -SQHTGLNQHIRTHTGEKPFACDICGRKFA 73

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 47  EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
           E C + F Q  SL  H       +P++C  C ++F+ S +L TH   H+G +PF C  C 
Sbjct: 10  ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQ 130
           + F       S     +TK +L Q
Sbjct: 70  RKFAR-----SDERKRHTKIHLRQ 88

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 40  NAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHS 95
               H C+Y  C K + + S L +H       +PY CD   C   F  S  L  H   H+
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 96  GIRPFKCTTCDKSF 109
           G RPF+C  CD++F
Sbjct: 62  GHRPFQCQKCDRAF 75

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHT 120
           +PYKCD C+ SF    NL +H+ +H+G +P++C  C   F    N   THT
Sbjct: 16  KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN-LKTHT 65

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S +L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S  L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S  L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S  L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 58  TGE---------KPFACDICGRKFA 73

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70  RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C  ++C++ F+ S  L  H  IH+G +PF+C  C ++F       S H  T+ +++
Sbjct: 2   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 56
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
             +         KP+ CD C + F 
Sbjct: 57  TGE---------KPFACDICGRKFA 72

>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Zinc Finger Protein 24 Length = 72

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
           +PY C  C K+F+ S  L  HQ +H+G +P+KC  C K+F
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 57  SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT 116
           ++LL++  P+M+P     ++C++ F+ S  L  H  IH+G +PF+C  C ++F ++ +  
Sbjct: 7   NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF-SRSDHL 65
Query: 117 STHTPTYT 124
           +TH  T+T
Sbjct: 66  TTHIRTHT 73

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 38  SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL---IH 94
           S ++GV +C  CHK F  +  L  HN      +P++C  C K +   +NL  H+    ++
Sbjct: 3   SGSSGV-ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 95  SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDR 154
              + F C+ C ++F  ++     H  ++T                PY+C  CSQ F  +
Sbjct: 62  RSEQVFTCSVCQETFRRRME-LRLHMVSHTGE-------------MPYKCSSCSQQFMQK 107
Query: 155 MNLISH 160
            +L SH
Sbjct: 108 KDLQSH 113

>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX Length = 155

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 36/150 (24%)
Query: 19  IHGNDNAYKCHQ--CQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC-- 74
           IHG    + CH   C R +               + F  Q  L+ H       +P+KC  
Sbjct: 28  IHGERKEFVCHWGGCSREL---------------RPFKAQYMLVVHMRRHTGEKPHKCTF 72
Query: 75  DTCEKSFTNSQNLNTHQLIHSGIRPFKC--TTCDKSFVNQINPTSTHTPTYTKSNLAQHS 132
           + C KS++  +NL TH   H+G +P+ C    C K+F N              S+ A+H 
Sbjct: 73  EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA-------------SDRAKHQ 119
Query: 133 CMNSHFPKPYQCD--RCSQFFGDRMNLISH 160
                  KPY C    C++ + D  +L  H
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149

>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 311- 343) Of Human Zinc Finger Protein 224 Length = 46

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +P++CDTC+KSF     LN+H++IH+G +P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +C    K F  +  L++H       +P+ C    C K F  S+NL  H+  H+G +PFKC
Sbjct: 64  ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 103 --TTCDKSFVN 111
               CD+ F N
Sbjct: 124 EFEGCDRRFAN 134

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 49  CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT-- 104
           C   +++   L +H C     +P+ C  + CEK FT+  +L  H L H+G + F C +  
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 105 CDKSFVNQIN 114
           CD  F  + N
Sbjct: 80  CDLRFTTKAN 89

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 46  CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
           C  C + +   +SL  H       + Y C  CEK F  ++    H++ H+G R ++C  C
Sbjct: 25  CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 106 DKSFVN 111
            KSF+N
Sbjct: 85  GKSFIN 90

>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain Of Zinc Finger Protein 347 Length = 46

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +PYKC+ C K+F    NL THQ+IH+G +P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
           +P++C  C ++F+ S +L TH   H+G +PF C  C + F  
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 38  SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
           S ++GV  CE C K+F     L  H       +PY C  C   F     ++ H   H G 
Sbjct: 3   SGSSGV-ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 98  --RPFKCTTCDKSF 109
             +P+ C +C K F
Sbjct: 62  VGKPYICQSCGKGF 75

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 74  CDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC 133
           C+ C K F +  +LN H+L HSG +P+ C  C   F  + +  S H  ++  S       
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK-DRMSYHVRSHDGS------- 61
Query: 134 MNSHFPKPYQCDRCSQFF 151
                 KPY C  C + F
Sbjct: 62  ----VGKPYICQSCGKGF 75

>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 752- 784) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +PY+C  C K+F++ Q+L+ HQ IHSG +P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40

>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 631- 663) Of Human Zinc Finger Protein 484 Length = 46

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +PY+C  C K+FT+  NL THQ IH+G +P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40

>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 528- 560) Of Human Zinc Finger Protein 28 Homolog Length = 46

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
          +PYKCD C KSF    +L  HQ IH+G +P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-19
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-16
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-16
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	8e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-19
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-18
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-14
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-09
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-18
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	8e-14
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	9e-18
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-16
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	9e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	7e-17
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-14
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	1e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-16
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-12
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-16
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-13
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-12
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-15
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-15
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-13
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-15
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	9e-14
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-09
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-15
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-14
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-14
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	7e-08
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-14
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-14
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-14
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-10
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-14
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-10
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	9e-14
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-10
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	5e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-13
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-12
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	9e-13
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-13
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	9e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-13
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-09
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	9e-13
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-10
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	7e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-12
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-10
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-12
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-10
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-12
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	8e-08
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-11
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-10
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	8e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-11
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-10
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-11
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	8e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	9e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-11
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-09
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	8e-08
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	1e-09
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	6e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-09
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-09
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-09
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	7e-09
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-09
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-08
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-08
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-08
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-08
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-08
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-08
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-08
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	3e-08
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-08
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-08
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-08
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-08
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	5e-08
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-08
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	5e-08
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-08
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-08
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-08
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	7e-08
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	7e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-08
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-08
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	8e-08
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	9e-08
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	9e-08
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-07
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	1e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	1e-07
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	1e-07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	1e-07
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-07
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	1e-07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-07
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-07
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-07
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-07
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	5e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-07
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-07
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-07
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-07
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-07
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-07
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-07
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-07
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-07
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-07
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-07
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-07
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	8e-07
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-06
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	1e-06
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	3e-06
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	3e-06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	3e-06
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	3e-06
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	5e-06
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	1e-05
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	3e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	5e-05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	7e-05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	9e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	1e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-04

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 79.1 bits (196), Expect = 2e-19
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 19/125 (15%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQ---LIHSGIRPFK 101
           +C  CHK F  +  L  HN      +P++C  C K +   +NL  H+    ++   + F 
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68

Query: 102 CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISH 160
           C+ C ++F               +  L  H  M SH    PY+C  CSQ F  + +L SH
Sbjct: 69  CSVCQETFRR-------------RMELRLH--MVSHTGEMPYKCSSCSQQFMQKKDLQSH 113

Query: 161 HCHKH 165
               H
Sbjct: 114 MIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 71.4 bits (176), Expect = 2e-16
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 32/122 (26%)

Query: 26  YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKP------ 69
            +C  C +         VH          +C  C K + ++ +LL H   + +       
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---EARNCMNRSE 64

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           + + C  C+++F     L  H + H+G  P+KC++C + F+              K +L 
Sbjct: 65  QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ-------------KKDLQ 111

Query: 130 QH 131
            H
Sbjct: 112 SH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 71.0 bits (175), Expect = 2e-16
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 15/94 (15%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
              +C TC K F +   L  H   H+G +PF+C  C K +               K NL 
Sbjct: 6   SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFR-------------KENLL 52

Query: 130 QH-SCMNSHF-PKPYQCDRCSQFFGDRMNLISHH 161
           +H +    +   + + C  C + F  RM L  H 
Sbjct: 53  EHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 18/104 (17%)

Query: 11  FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH-------------KCEYCHKVF 53
           F  +  L      H  +  ++C +C +  F   N   H              C  C + F
Sbjct: 17  FLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF 76

Query: 54  DQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSG 96
            ++  L  H        PYKC +C + F   ++L +H + +HSG
Sbjct: 77  RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 39.8 bits (94), Expect = 8e-05
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 16/69 (23%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
            SG    +C TC K F++             K  L  H     H   KP++C +C + + 
Sbjct: 2   SSGSSGVECPTCHKKFLS-------------KYYLKVH--NRKHTGEKPFECPKCGKCYF 46

Query: 153 DRMNLISHH 161
            + NL+ H 
Sbjct: 47  RKENLLEHE 55

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 79.8 bits (198), Expect = 4e-19
 Identities = 45/153 (29%), Positives = 59/153 (38%), Gaps = 38/153 (24%)

Query: 26  YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPR----- 70
           Y C +C +    S +   H          KC  C K F  +  L  H       R     
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ------RTHTGE 75

Query: 71  -PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
            PYKC  C KSF+   NL  HQ  H+G +P+ C  C KSF                ++L 
Sbjct: 76  KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ-------------LAHLR 122

Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHH 161
            H    +H   KPY+C  C + F    NL +H 
Sbjct: 123 AH--QRTHTGEKPYKCPECGKSFSREDNLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 78.3 bits (194), Expect = 2e-18
 Identities = 50/172 (29%), Positives = 68/172 (39%), Gaps = 42/172 (24%)

Query: 11  FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQ 56
           FS+   L      H  +  YKC +C +      +   H          KC  C K F Q+
Sbjct: 31  FSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR 90

Query: 57  SSLLSHNCPQMKPR------PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV 110
           ++L +H       R      PY C  C KSF+   +L  HQ  H+G +P+KC  C KSF 
Sbjct: 91  ANLRAHQ------RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS 144

Query: 111 NQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHH 161
                         + NL  H    +H   KPY+C  C + F  R  L  H 
Sbjct: 145 R-------------EDNLHTH--QRTHTGEKPYKCPECGKSFSRRDALNVHQ 181

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 67.9 bits (167), Expect = 1e-14
 Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 28/116 (24%)

Query: 53  FDQQSSLLSHNCPQMKPR------PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
               SS ++               PY C  C KSF+ S +L  HQ  H+G +P+KC  C 
Sbjct: 3   EFGSSSSVAQA------ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECG 56

Query: 107 KSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHH 161
           KSF +             K +L +H    +H   KPY+C  C + F  R NL +H 
Sbjct: 57  KSFSD-------------KKDLTRH--QRTHTGEKPYKCPECGKSFSQRANLRAHQ 97

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 16/83 (19%)

Query: 80  SFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF- 138
           S   S +      +  G +P+ C  C KSF ++              +LA+H    +H  
Sbjct: 2   SEFGSSSSVAQAALEPGEKPYACPECGKSF-SR------------SDHLAEH--QRTHTG 46

Query: 139 PKPYQCDRCSQFFGDRMNLISHH 161
            KPY+C  C + F D+ +L  H 
Sbjct: 47  EKPYKCPECGKSFSDKKDLTRHQ 69

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 14/103 (13%)

Query: 11  FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQ 56
           FSQ+  L      H  +  Y C +C +     A+   H          KC  C K F ++
Sbjct: 87  FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146

Query: 57  SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
            +L +H       +PYKC  C KSF+    LN HQ  H+G + 
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 75.2 bits (186), Expect = 2e-18
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           +P++C  C ++F+ S +L TH   H+G +PF C  C + F  +                 
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-AR------------SDERK 48

Query: 130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCH 163
           +H   +     P   D+  +      +L +    
Sbjct: 49  RH--RDIQHILPILEDKVEELLSKNYHLENEVAR 80

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 63.3 bits (155), Expect = 8e-14
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
            +C  C + F +   L +H    ++     +P+ CD C + F  S     H+ I   I P
Sbjct: 4   FQCRICMRNFSRSDHLTTH----IRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILP 58

Query: 100 FKCTTCDKSF 109
                 ++  
Sbjct: 59  ILEDKVEELL 68

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 9/77 (11%), Positives = 16/77 (20%), Gaps = 28/77 (36%)

Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMK---PRPYKCDTCEKSFT 82
          + C  C                   + F +      H           P   D  E+  +
Sbjct: 32 FACDICG------------------RKFARSDERKRH----RDIQHILPILEDKVEELLS 69

Query: 83 NSQNLNTHQL---IHSG 96
           + +L           G
Sbjct: 70 KNYHLENEVARLKKLVG 86

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 73.6 bits (182), Expect = 9e-18
 Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 16/102 (15%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           HKCE C K F ++  L +H       +PYKC TC+ +  +S +LN H  IHS  RPFKC 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 104 TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
            C  +  N              S L  H  + SH        
Sbjct: 69  ICPYASRN-------------SSQLTVH--LRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 69.0 bits (170), Expect = 5e-16
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 16/93 (17%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
            P+KC+ C K F+    L TH   H+G++P+KC TCD +  +              S+L 
Sbjct: 7   GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD-------------SSSLN 53

Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHH 161
           +H  +  H   +P++C  C     +   L  H 
Sbjct: 54  KH--LRIHSDERPFKCQICPYASRNSSQLTVHL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 52.4 bits (127), Expect = 9e-10
 Identities = 19/77 (24%), Positives = 22/77 (28%), Gaps = 18/77 (23%)

Query: 26  YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQ 85
           YKC  C                         SSL  H       RP+KC  C  +  NS 
Sbjct: 37  YKCKTCD------------------YAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS 78

Query: 86  NLNTHQLIHSGIRPFKC 102
            L  H   H+G      
Sbjct: 79  QLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
                P KC  C K F ++            K  L  H  M  H   KPY+C  C     
Sbjct: 3   SGSSGPHKCEVCGKCF-SR------------KDKLKTH--MRCHTGVKPYKCKTCDYAAA 47

Query: 153 DRMNLISHH 161
           D  +L  H 
Sbjct: 48  DSSSLNKHL 56

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 71.4 bits (176), Expect = 7e-17
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 18/93 (19%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQ 130
              C+ C K F +  +LN H+L HSG +P+ C  C   F  +            K  ++ 
Sbjct: 7   GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF-KR------------KDRMSY 53

Query: 131 HSCMNSH---FPKPYQCDRCSQFFGDRMNLISH 160
           H  + SH     KPY C  C + F    +L  H
Sbjct: 54  H--VRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 63.7 bits (156), Expect = 6e-14
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG--IRPFK 101
             CE C K+F     L  H       +PY C  C   F     ++ H   H G   +P+ 
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67

Query: 102 CTTCDKSF 109
           C +C K F
Sbjct: 68  CQSCGKGF 75

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 27/77 (35%)

Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQM-----KPRPYKCDTCEKS 80
          Y C  C                     F ++  +  H            +PY C +C K 
Sbjct: 36 YSCPVCG------------------LRFKRKDRMSYH---VRSHDGSVGKPYICQSCGKG 74

Query: 81 FTNSQNLNTH-QLIHSG 96
          F+   +LN H + +HSG
Sbjct: 75 FSRPDHLNGHIKQVHSG 91

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 16/69 (23%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
            SG     C  C K F                 +L +H    SH   KPY C  C   F 
Sbjct: 2   SSGSSGVACEICGKIF-RD------------VYHLNRH--KLSHSGEKPYSCPVCGLRFK 46

Query: 153 DRMNLISHH 161
            +  +  H 
Sbjct: 47  RKDRMSYHV 55

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 71.8 bits (177), Expect = 1e-16
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 44  HKCEY--CHKVFDQQSSLLSHNCPQMK---PRPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
             C +  C K+F   S++  H    +    PR + C  C K+F  S  L  HQL+H+G +
Sbjct: 6   IACPHKGCTKMFRDNSAMRKH----LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61

Query: 99  PFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQFFGD 153
           PF+CT   C K F                 NL  H  +  H   +PY C    C++ F  
Sbjct: 62  PFQCTFEGCGKRFS-------------LDFNLRTH--VRIHTGDRPYVCPFDGCNKKFAQ 106

Query: 154 RMNLISHH 161
             NL SH 
Sbjct: 107 STNLKSHI 114

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 61.0 bits (149), Expect = 1e-12
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 21/100 (21%)

Query: 67  MKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT 124
           M+PR   C    C K F ++  +  H   H G R   C  C K+FV              
Sbjct: 1   MEPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFV-------------E 46

Query: 125 KSNLAQHSCMNSHF-PKPYQCDR--CSQFFGDRMNLISHH 161
            S L +H     H   KP+QC    C + F    NL +H 
Sbjct: 47  SSKLKRH--QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 27/113 (23%)

Query: 11  FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEY--CHKVFD 54
           F   + +      HG    + C +C +    S+    H          +C +  C K F 
Sbjct: 17  FRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75

Query: 55  QQSSLLSHNCPQMK----PRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFK 101
              +L +H    ++     RPY C    C K F  S NL +H L H+  +  +
Sbjct: 76  LDFNLRTH----VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 69.8 bits (172), Expect = 4e-16
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 21/117 (17%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            C+ C K F  +S    H    +  RPY C  C K F    +L  H  IH+GI+P++C  
Sbjct: 12  PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70

Query: 105 CDKSFVNQINPTSTHTPTYTKSNLAQ--HSCMNSHFPKPYQCDRCSQFFGDRMNLIS 159
           C K F+              + +  +   SC      K Y+  +  Q   +     S
Sbjct: 71  CAKRFMW-------------RDSFHRHVTSCT-----KSYEAAKAEQNTTEASGPSS 109

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 62.1 bits (152), Expect = 4e-13
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           + Y C  C KSFT+    + H  +H G+RP+ C  C K F               K +L 
Sbjct: 9   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF-KM------------KHHLV 54

Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISH 160
            H  M  H   KPY+C+ C++ F  R +   H
Sbjct: 55  GH--MKIHTGIKPYECNICAKRFMWRDSFHRH 84

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 59.0 bits (144), Expect = 5e-12
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           + C  C K F  +  L+ H       +PY+C+ C K F    +   H+ + S  + ++  
Sbjct: 38  YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95

Query: 104 TCDKSFVNQINPTS 117
             +++      P+S
Sbjct: 96  KAEQNTTEASGPSS 109

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 68.3 bits (168), Expect = 2e-15
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 30/129 (23%)

Query: 44  HKCEY--CHKVFDQQSSLLSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIHS 95
             C Y  C+K + + S L  H     +     +PY+CD   CE+ F+ S  L  HQ  H+
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMH----SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62

Query: 96  GIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQFFG 152
           G++PF+C TC + F                 +L  H    +H   KP+ C    C + F 
Sbjct: 63  GVKPFQCKTCQRKF-------------SRSDHLKTH--TRTHTGEKPFSCRWPSCQKKFA 107

Query: 153 DRMNLISHH 161
               L+ HH
Sbjct: 108 RSDELVRHH 116

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.1 bits (100), Expect = 9e-06
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIH 94
            +C+ C + F +   L +H     +     +P+ C    C+K F  S  L  H  +H
Sbjct: 67  FQCKTCQRKFSRSDHLKTH----TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 66.8 bits (164), Expect = 3e-15
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 44  HKCEYCHKVFDQQSSLLSHNC----PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
           + C +C K F Q+  L  H      P   P  + C  C K+FT    +  H    +G   
Sbjct: 16  YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75

Query: 100 FKCTTCDKSF 109
            +      S 
Sbjct: 76  VEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 61.4 bits (150), Expect = 3e-13
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 20/88 (22%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSG----IRPFKCTTCDKSFVNQINPTSTHTPTYTK 125
           +PY C  C+K+F   Q L+ H   +         F C+ C K+F               +
Sbjct: 14  KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF-------------TRR 60

Query: 126 SNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
           + +A+H   ++   P   + +      G
Sbjct: 61  NTMARH--ADNCAGPDGVEGENSGPSSG 86

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 20/80 (25%)

Query: 86  NLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH-----FPK 140
           +  +    H+G +P+ C+ CDK+F               K  L  H     +      P 
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTF-------------RQKQLLDMH--FKRYHDPNFVPA 46

Query: 141 PYQCDRCSQFFGDRMNLISH 160
            + C +C + F  R  +  H
Sbjct: 47  AFVCSKCGKTFTRRNTMARH 66

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 66.3 bits (163), Expect = 5e-15
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 18/94 (19%)

Query: 70  RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
           RPY C    C++ F+ S +L  H  IH+G +PF+C  C ++F ++              +
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF-SR------------SDH 49

Query: 128 LAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISH 160
           L  H  + +H   KP+ CD C + F        H
Sbjct: 50  LTTH--IRTHTGEKPFACDICGRKFARSDERKRH 81

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 63.3 bits (155), Expect = 9e-14
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 44  HKC--EYCHKVFDQQSSLLSHNCPQMK----PRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
           + C  E C + F Q  SL  H    ++     +P++C  C ++F+ S +L TH   H+G 
Sbjct: 5   YACPVESCDRRFSQSGSLTRH----IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60

Query: 98  RPFKCTTCDKSF 109
           +PF C  C + F
Sbjct: 61  KPFACDICGRKF 72

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 50.5 bits (122), Expect = 4e-09
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
           +C  C + F +   L +H    ++     +P+ CD C + F  S     H  IH  
Sbjct: 35 FQCRICMRNFSRSDHLTTH----IRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 66.7 bits (164), Expect = 5e-15
 Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 16/102 (15%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
             C++C + F +  +LL H       RPY CD C K+F    +L  H+ IHS  +PFKC 
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77

Query: 104 TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
            C K F  Q               LA H     H        
Sbjct: 78  ECGKGF-CQ------------SRTLAVH--KTLHMQTSSPTA 104

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 65.5 bits (161), Expect = 1e-14
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 16/93 (17%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           + + C  C + FT S NL  H+  H+  RP+ C  C K+F  +            + +L 
Sbjct: 16  KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF-RR------------QDHLR 62

Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHH 161
            H     H   KP++C  C + F     L  H 
Sbjct: 63  DH--RYIHSKEKPFKCQECGKGFCQSRTLAVHK 93

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 64.8 bits (159), Expect = 3e-14
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 26  YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD 75
           + C  C R    S N  +H           C+ CHK F +Q  L  H     K +P+KC 
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77

Query: 76  TCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            C K F  S+ L  H+ +H         +
Sbjct: 78  ECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 47.8 bits (115), Expect = 7e-08
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 16/79 (20%)

Query: 84  SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
           S   +  +L     + F C  C + F  +              NL  H    +H   +PY
Sbjct: 2   SSGSSGGRLPSKTKKEFICKFCGRHF-TK------------SYNLLIH--ERTHTDERPY 46

Query: 143 QCDRCSQFFGDRMNLISHH 161
            CD C + F  + +L  H 
Sbjct: 47  TCDICHKAFRRQDHLRDHR 65

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 68.0 bits (167), Expect = 6e-15
 Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 42/154 (27%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKC 74
           IHG    + CH                C    + F  Q  L+ H    M+     +P+KC
Sbjct: 28  IHGERKEFVCHWG-------------GCSRELRPFKAQYMLVVH----MRRHTGEKPHKC 70

Query: 75  DT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQ 130
               C KS++  +NL TH   H+G +P+ C    C K+F N              S+ A+
Sbjct: 71  TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN-------------ASDRAK 117

Query: 131 HSCMNSHF-PKPYQCDR--CSQFFGDRMNLISHH 161
           H    +H   KPY C    C++ + D  +L  H 
Sbjct: 118 HQ-NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMK---PRPYKCDTCE-----KSFTNSQNLNTHQLIHSG 96
           + + C + FD Q  L+ H   +      + + C         + F     L  H   H+G
Sbjct: 5   RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64

Query: 97  IRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC--DRCSQFF 151
            +P KCT   C KS+                 NL  H  + SH   KPY C  + CS+ F
Sbjct: 65  EKPHKCTFEGCRKSYS-------------RLENLKTH--LRSHTGEKPYMCEHEGCSKAF 109

Query: 152 GDRMNLISHHCHKH 165
            +  +   H    H
Sbjct: 110 SNASDRAKHQNRTH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 15/62 (24%)

Query: 45  KCEY--CHKVFDQQSSLLSHNCPQMKPR------PYKCDT--CEKSFTNSQNLNTHQLIH 94
            CE+  C K F   S    H     + R      PY C    C K +T+  +L  H    
Sbjct: 99  MCEHEGCSKAFSNASDRAKH-----QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

Query: 95  SG 96
            G
Sbjct: 154 HG 155

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 64.8 bits (159), Expect = 2e-14
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 16/91 (17%)

Query: 72  YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
           + C  C KSF  S  L+TH LIHS  RP+ C  C K F +Q            KS++ +H
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-HQ------------KSDMKKH 48

Query: 132 SCMNSHF-PKPYQCDRCSQFFGDRMNLISHH 161
                H   KP++C  C + F    NLI+H 
Sbjct: 49  --TFIHTGEKPHKCQVCGKAFSQSSNLITHS 77

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 64.0 bits (157), Expect = 3e-14
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            C+ C K F + S+L +H       RPY C  C K F    ++  H  IH+G +P KC  
Sbjct: 3   DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62

Query: 105 CDKSFVNQINPTSTHTPTYTKSNLAQH 131
           C K+F +Q             SNL  H
Sbjct: 63  CGKAF-SQ------------SSNLITH 76

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 53.6 bits (130), Expect = 2e-10
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 25 AYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
          ++ C  C +    S+    H           C+YC K F Q+S +  H       +P+KC
Sbjct: 1  SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60

Query: 75 DTCEKSFTNSQNLNTHQLIHSG 96
            C K+F+ S NL TH   H+G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 66.1 bits (162), Expect = 6e-14
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 26/130 (20%)

Query: 44  HKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRP 99
           + C +  C   +++   L +H C     +P+ C    CEK FT+  +L  H L H+G + 
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72

Query: 100 FKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF---PKPYQCDR--CSQFFG 152
           F C    CD  F              TK+N+ +H   N         Y C    C + F 
Sbjct: 73  FTCDSDGCDLRF-------------TTKANMKKH--FNRFHNIKICVYVCHFENCGKAFK 117

Query: 153 DRMNLISHHC 162
               L  H  
Sbjct: 118 KHNQLKVHQF 127

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 36/139 (25%)

Query: 44  HKCE--YCHKVFDQQSSLLSHNCPQM-----KPRPYKCDT--CEKSFTNSQNLNTHQLIH 94
             C+   C   F  ++++  H          K   Y C    C K+F     L  HQ  H
Sbjct: 73  FTCDSDGCDLRFTTKANMKKH---FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129

Query: 95  SGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH----FPKPYQCDRCS 148
           +   P++C    CDK F                S L +H     H      K   C    
Sbjct: 130 TQQLPYECPHEGCDKRF-------------SLPSRLKRH--EKVHAGYPCKKDDSCSFVG 174

Query: 149 QFFGDRMNLISHHCHKHKQ 167
           + +      + H    H+ 
Sbjct: 175 KTWT---LYLKHVAECHQD 190

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 22/99 (22%)

Query: 70  RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTK 125
           + Y C    C  ++  +  L  H   H+G +PF C    C+K F              + 
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFT-------------SL 57

Query: 126 SNLAQHSCMNSHF-PKPYQCD--RCSQFFGDRMNLISHH 161
            +L +H    +H   K + CD   C   F  + N+  H 
Sbjct: 58  HHLTRH--SLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 62.9 bits (154), Expect = 9e-14
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 42  GVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGI 97
             H C+Y  C K + + S L +H       +PY CD   C   F  S  L  H   H+G 
Sbjct: 4   ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63

Query: 98  RPFKCTTCDKSF 109
           RPF+C  CD++F
Sbjct: 64  RPFQCQKCDRAF 75

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 23/102 (22%)

Query: 68  KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTK 125
                    C K++T S +L  H   H+G +P+ C    C   F                
Sbjct: 4   ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARS------------- 50

Query: 126 SNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHHCHKHK 166
             L +H     H   +P+QC +C + F       S H   H 
Sbjct: 51  DELTRH--YRKHTGHRPFQCQKCDRAFSR-----SDHLALHM 85

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
          + C   F +   L  H       RP++C  C+++F+ S +L  H   H
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 62.2 bits (152), Expect = 2e-13
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 11/72 (15%)

Query: 45  KCEYCHKVFDQQSSLLSHNCPQMKP-----RPYKCD--TCEKSFTNSQNLNTHQLIHSGI 97
               C ++F  +  L  H     K      + + C    C KSF   ++L  H  +HS  
Sbjct: 11  DFPGCGRIFSNRQYLNHH----KKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66

Query: 98  RPFKCTTCDKSF 109
           R + C     S 
Sbjct: 67  RDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 59.1 bits (144), Expect = 2e-12
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 21/89 (23%)

Query: 70  RPYKCDT--CEKSFTNSQNLNTHQLI-HSGIRPFKCT--TCDKSFVNQINPTSTHTPTYT 124
               CD   C + F+N Q LN H+   H   + F C    C KSF               
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNF------------- 52

Query: 125 KSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
           K +L +H  M  H   + Y C+      G
Sbjct: 53  KKHLKEH--MKLHSDTRDYICEFSGPSSG 79

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 47/155 (30%)

Query: 19  IHGNDNAYKCHQCQRLIFLSANAGVHK-------------------CEYCHKVFDQQSSL 59
           I     +     C R          H                    C    K F  +  L
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78

Query: 60  LSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVN 111
           ++H    ++     +P+ C    C K F  S+NL  H+  H+G +PFKC    CD+ F N
Sbjct: 79  VNH----IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134

Query: 112 QINPTSTHTPTYTKSNLAQHSCMNSHFP-KPYQCD 145
                         S+  +H  M+ H   K     
Sbjct: 135 -------------SSDRKKH--MHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 62.3 bits (152), Expect = 9e-13
 Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 29/131 (22%)

Query: 44  HKCEYCHKVFDQQSSLLSH---------NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
              + C + F     L++H                   +C    KSF     L  H  +H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 95  SGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQ 149
           +G +PF C    C K F                 NL  H    +H   KP++C+   C +
Sbjct: 86  TGEKPFPCPFPGCGKIFA-------------RSENLKIH--KRTHTGEKPFKCEFEGCDR 130

Query: 150 FFGDRMNLISH 160
            F +  +   H
Sbjct: 131 RFANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 24/124 (19%), Positives = 34/124 (27%), Gaps = 27/124 (21%)

Query: 49  CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK------- 101
                      LS              +C+++F+    L TH  +     P +       
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 102 --CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP-KPYQCDR--CSQFFGDRMN 156
             C    KSF               K  L  H  +  H   KP+ C    C + F    N
Sbjct: 63  EECPREGKSF-------------KAKYKLVNH--IRVHTGEKPFPCPFPGCGKIFARSEN 107

Query: 157 LISH 160
           L  H
Sbjct: 108 LKIH 111

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 62.6 bits (153), Expect = 2e-13
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 44  HKCE--YCHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRP 99
           H C+   C KV+ + S L +H       +PYKC  + C+  F  S  L  H   H+G +P
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75

Query: 100 FKCTTCDKSF 109
           F+C  C++SF
Sbjct: 76  FQCGVCNRSF 85

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 51.1 bits (123), Expect = 3e-09
 Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 26/113 (23%)

Query: 53  FDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKS 108
                  L         R + CD   C K +T S +L  H   H+G +P+KCT   CD  
Sbjct: 3   SGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56

Query: 109 FVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISH 160
           F                  L +H     H   KP+QC  C++ F    +L  H
Sbjct: 57  FARS-------------DELTRH--YRKHTGAKPFQCGVCNRSFSRSDHLALH 94

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
          E C   F +   L  H       +P++C  C +SF+ S +L  H   H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 60.2 bits (147), Expect = 7e-13
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 13/62 (20%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
            P KC  C  S ++   L  H+ IH   RPFKC  C                    SNL+
Sbjct: 8   HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ-------------PSNLS 54

Query: 130 QH 131
           +H
Sbjct: 55  KH 56

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 51.3 bits (124), Expect = 1e-09
 Identities = 14/53 (26%), Positives = 20/53 (37%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
           KC  C      +++L  H       RP+KC+ C        NL+ H     G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 42.1 bits (100), Expect = 4e-06
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 16/69 (23%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
            S   P KC+ C  S  +             K+ L  H     H   +P++C+ CS    
Sbjct: 4   GSSGHPEKCSECSYSCSS-------------KAALRIH--ERIHCTDRPFKCNYCSFDTK 48

Query: 153 DRMNLISHH 161
              NL  H 
Sbjct: 49  QPSNLSKHM 57

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 60.2 bits (147), Expect = 9e-13
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSG--IRPFKCTTCDKSF 109
           +PY+C  C   FT S  +  H L      +  F C  CD   
Sbjct: 14  KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.9 bits (128), Expect = 4e-10
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 9/63 (14%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQM-----KPRPYKCDTCEKSFTNSQNLNTHQ-LIHSGI 97
           ++C  CH  F Q  ++  H    +         + C  C+       +L  H    HS  
Sbjct: 16  YECYICHARFTQSGTMKMH---ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72

Query: 98  RPF 100
            P 
Sbjct: 73  GPS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 18/83 (21%)

Query: 86  NLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH---FPKPY 142
           +  +    HSG +P++C  C   F        T         +  H  +          +
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARF--------TQ-----SGTMKMH--ILQKHTENVAKF 46

Query: 143 QCDRCSQFFGDRMNLISHHCHKH 165
            C  C      + +L  H   +H
Sbjct: 47  HCPHCDTVIARKSDLGVHLRKQH 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 59.7 bits (145), Expect = 1e-12
 Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 16/86 (18%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHS---GIRPFKCTTCDKSFVNQINPTSTHTPTYTKS 126
              +C+ C  +     +LN HQ  H+       F C  C K F                 
Sbjct: 6   SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF-------------EKPD 52

Query: 127 NLAQHSCMNSHFPKPYQCDRCSQFFG 152
           ++A H   +         +      G
Sbjct: 53  SVAAHRSKSHPALLLAPQESSGPSSG 78

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.4 bits (126), Expect = 7e-10
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 44  HKCEYCHKVFDQQSSLLSHN---CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
            +CE C     Q++SL  H       +    + C+ C K F    ++  H+         
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 101 KCTTCDK 107
                  
Sbjct: 68  APQESSG 74

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 19/76 (25%)

Query: 94  HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP----KPYQCDRCSQ 149
            SG    +C  C  +                K++L  H     H        + C+ C +
Sbjct: 2   SSGSSGLQCEICGFTC-------------RQKASLNWH--QRKHAETVAALRFPCEFCGK 46

Query: 150 FFGDRMNLISHHCHKH 165
            F    ++ +H    H
Sbjct: 47  RFEKPDSVAAHRSKSH 62

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 43  VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIR 98
           ++ C +  C K F + + L  H     +  PY+C    C+K F+    L  H+ +H+G  
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60

Query: 99  PFKCTTCDKSF 109
             K  +C    
Sbjct: 61  CKKDDSCSFVG 71

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 52.6 bits (127), Expect = 6e-10
 Identities = 24/99 (24%), Positives = 31/99 (31%), Gaps = 20/99 (20%)

Query: 72  YKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSN 127
           Y C    C K+F     L  HQ  H+   P++C    CDK F                S 
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS-------------LPSR 48

Query: 128 LAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHHCHKH 165
           L +H     H      + D CS         + H    H
Sbjct: 49  LKRH--EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 57.8 bits (141), Expect = 7e-12
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)

Query: 55  QQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN 114
              S       Q + R YKCD C KSF++S +L+ H+  H+G +P+KC  C K+F  Q  
Sbjct: 2   SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF-IQ-- 58

Query: 115 PTSTHTPTYTKSNLAQH 131
                     +S+L  H
Sbjct: 59  ----------RSHLIGH 65

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 54.0 bits (131), Expect = 2e-10
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK 101
           +KC+ C K F   S L  H       +PYKCD C K+F    +L  H  +H+G  P  
Sbjct: 19  YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 48.2 bits (116), Expect = 2e-08
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 16/79 (20%)

Query: 84  SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
           S +    +      R +KC  C KSF +              S+L++H    +H   KPY
Sbjct: 3   SGSSGRSEWQQRERRRYKCDECGKSF-SH------------SSDLSKH--RRTHTGEKPY 47

Query: 143 QCDRCSQFFGDRMNLISHH 161
           +CD C + F  R +LI HH
Sbjct: 48  KCDECGKAFIQRSHLIGHH 66

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 57.1 bits (139), Expect = 8e-12
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
           R + C+ C ++F   ++L  H   H+  +P+ C  C+++F
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 46.3 bits (111), Expect = 8e-08
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH-QLIHSG 96
            CE C + F +Q  L  H       +PY C  C ++FT    L  H Q IHSG
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 57.1 bits (139), Expect = 1e-11
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 13/61 (21%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQ 130
           PYKCD C+ SF    NL +H+ +H+G +P++C  C   F N+             +NL  
Sbjct: 17  PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF-NR------------PANLKT 63

Query: 131 H 131
           H
Sbjct: 64  H 64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 53.2 bits (129), Expect = 3e-10
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +KC+ C   F  + +L SH       +PY+C+ C   F    NL TH  IHSG +P+
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 49.4 bits (119), Expect = 8e-09
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 84  SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
             + + H  +    +P+KC  C  SF               K NLA H     H   KPY
Sbjct: 2   GHHHHHHSHMTHSDKPYKCDRCQASF-RY------------KGNLASH--KTVHTGEKPY 46

Query: 143 QCDRCSQFFGDRMNLISHH 161
           +C+ C   F    NL +H 
Sbjct: 47  RCNICGAQFNRPANLKTHT 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 55.6 bits (135), Expect = 3e-11
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 15/64 (23%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLI--HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
             Y+C  C + +T+  N   H +      ++ + C  C K F               K N
Sbjct: 9   HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF-------------TRKDN 55

Query: 128 LAQH 131
           +  H
Sbjct: 56  MTAH 59

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 44 HKCEYCHKVFDQQSSLLSH--NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
          ++C+ C +V+   S+   H     +   + Y C  C K FT   N+  H  I   I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 14/77 (18%)

Query: 91  QLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQ 149
           +    G   ++C  C + +        TH      SN  +H   +     K Y C  C +
Sbjct: 2   EFTKEGEHTYRCKVCSRVY--------TH-----ISNFCRHYVTSHKRNVKVYPCPFCFK 48

Query: 150 FFGDRMNLISHHCHKHK 166
            F  + N+ +H    HK
Sbjct: 49  EFTRKDNMTAHVKIIHK 65

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 55.3 bits (134), Expect = 3e-11
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 70  RPYKCDTCEKSFTNSQNLNTH-QLIHSGIRPFKCTTCDKSF 109
           +PY C +C K F+   +LN H + +H+  RP KC       
Sbjct: 11  KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.9 bits (89), Expect = 8e-05
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 9/45 (20%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKP-----RPYKCDTCEKSFTN 83
          + C+ C K F +   L  H    +K      RP+KC       ++
Sbjct: 13 YICQSCGKGFSRPDHLNGH----IKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 35.2 bits (82), Expect = 9e-04
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 25/69 (36%)

Query: 89  THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP------KPY 142
           +     S  +P+ C +C K F                   ++   +N H        +P+
Sbjct: 2   SSGSSGSVGKPYICQSCGKGF-------------------SRPDHLNGHIKQVHTSERPH 42

Query: 143 QCDRCSQFF 151
           +C       
Sbjct: 43  KCQVWVSGP 51

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 55.6 bits (135), Expect = 4e-11
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 13/62 (20%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
           +PY C  C K+F+ S  L  HQ +H+G +P+KC  C K+F +Q             S L 
Sbjct: 13  KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF-SQ------------NSGLI 59

Query: 130 QH 131
            H
Sbjct: 60  NH 61

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           + C  C K F + S L+ H       +PYKC  C K+F+ +  L  HQ IH+     
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 46.7 bits (112), Expect = 8e-08
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 87  LNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR 146
            +    IHSG +P+ C  C K+F                S L QH  +++   KPY+C  
Sbjct: 2   SSGSSGIHSGEKPYGCVECGKAFSR-------------SSILVQHQRVHTG-EKPYKCLE 47

Query: 147 CSQFFGDRMNLISHH 161
           C + F     LI+H 
Sbjct: 48  CGKAFSQNSGLINHQ 62

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 56  QSSLLSHNCPQMKP--RPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
           +   +++    + P  RPY C   +C++ F+ S  L  H  IH+G +PF+C  C ++F
Sbjct: 2   EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHS 95
          E C + F +   L  H       +P++C  C ++F+ S +L TH   H+
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 5e-09
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K + +  NL+ HQ +H+G RP   +
Sbjct: 11  KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 6e-09
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+KCD C KSF     LN H ++H+  +P   ++
Sbjct: 11  KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 7e-09
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + YKCD C K F+ S +L THQ +H+G +P   ++
Sbjct: 11  KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 48.7 bits (117), Expect = 7e-09
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
            PYKC  CEKSF+    L  HQ +H+  +P   +
Sbjct: 11  NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 9e-09
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC  C KSFT    L  HQ  H+G R    +
Sbjct: 11  KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 1e-08
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K +    NL+ HQ +H G +    ++
Sbjct: 11  KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKCD C KSF    +L  HQ IH+G +P   +
Sbjct: 11  KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            P+ C  C K FT+  NL  HQ IH+G RP   ++
Sbjct: 11  NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C K+FT+  NL THQ IH+G +P   ++
Sbjct: 11  KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 48.3 bits (116), Expect = 1e-08
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + +KC  C+  F+ + +L  HQ +H G +P   ++
Sbjct: 11  KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 47.9 bits (115), Expect = 1e-08
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+KC  C K F+    LN H  +H+G +P   ++
Sbjct: 11  KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 47.9 bits (115), Expect = 1e-08
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+ C  CEK+F++   L  HQ  H+  +P   ++
Sbjct: 9   KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K F   ++L TH ++H+G +P   ++
Sbjct: 11  KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           PYKC  C K+FT    L+ HQ  H+G R    ++
Sbjct: 12  PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + +KC+ C+K+FT S +L  HQ IH+G +P   ++
Sbjct: 11  KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 2e-08
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           RPY C+ C K+F    +L  H   H   +    ++
Sbjct: 11  RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 3e-08
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P++C  C+K+F    NL  HQ  H+G +P   ++
Sbjct: 11  KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 3e-08
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C  C K+FT   NL  HQ IH+  +P   ++
Sbjct: 11  KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 3e-08
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C+ C K+F +   L  HQ IH+G +P   ++
Sbjct: 11  KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 3e-08
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C K+F    NL  HQ IH+G +P   ++
Sbjct: 11  KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P++C  C KSF+ S  L THQ IH+G +P   ++
Sbjct: 11  KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC  C K+F    +LN H+ IH+G RP   +
Sbjct: 11  KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 4e-08
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K+F    NL THQ+IH+G +P   +
Sbjct: 11  KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC  C K +    +L+ HQ +H+G +    +
Sbjct: 11  KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +P+KC+ C K FT +  L++HQ +H+G +P   +
Sbjct: 11  KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           RP+KC+ C KSF  S +L  HQ IH+G +P   +
Sbjct: 11  RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C KSF+ S  L  H + H+  +P   ++
Sbjct: 11  KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K FT + +L  H  IH+G +P   +
Sbjct: 11  KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K FT + +L  HQ IH+G++P   ++
Sbjct: 11  KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+KC  C KS+    +L  HQ +H+G +P   ++
Sbjct: 11  KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           RPY C  C K+FT+  NL  HQ IH+G +P   
Sbjct: 11  RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 46.9 bits (112), Expect = 5e-08
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 70  RPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+ C    C   F+ S  L+ H+  HSG++P   ++
Sbjct: 11  KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC  C K+F  S +L  H  +HSG RP   ++
Sbjct: 11  KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C KSFT    L+ HQ IH+G +P   ++
Sbjct: 11  KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           R ++C  C K F  + N   H+ IH+G +P   ++
Sbjct: 11  RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 6e-08
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C KSF     L+ HQ IH+G  P   ++
Sbjct: 11  KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 6e-08
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           RP+KC+ C K F    +L  H  +HS  +    ++
Sbjct: 11  RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 6e-08
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C+ C K+F  S +LN H  +H+       ++
Sbjct: 11  KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 6e-08
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +PY C+ C K+F+   +L THQ+IH+G +P   
Sbjct: 11  KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 7e-08
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+KC  C K+F  + +L +H  IH+G +P   ++
Sbjct: 11  KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 46.0 bits (110), Expect = 7e-08
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +P++C  C KSF    NL THQ IH+G +    +
Sbjct: 11  KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 35.2 bits (82), Expect = 7e-04
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 89  THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
           +     +G +PF+CT C KSF               K NL  H  +++   K    
Sbjct: 2   SSGSSGTGQKPFECTHCGKSFRA-------------KGNLVTHQRIHTG-EKSGPS 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 8e-08
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K F ++  L+ HQ IH+G +P   +
Sbjct: 11  KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 8e-08
 Identities = 12/35 (34%), Positives = 25/35 (71%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P++C+ C K FT + +L++HQ +H+G +P   ++
Sbjct: 11  KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 8e-08
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P+ C  C K+F++   LN H+ IH+G +P   ++
Sbjct: 11  KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 9e-08
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C K+F++ Q+L+ HQ IHSG +P   ++
Sbjct: 11  KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.0 bits (110), Expect = 9e-08
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY CD C K+F  S  L  HQ IH+G +P   +
Sbjct: 11  KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + YKC+ C K F+ +  L+ HQ IH+G +P   ++
Sbjct: 11  KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY C  C KSF  +  L  HQ +HSG +P   +
Sbjct: 11  KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + Y C  C KSF+ +  L  H+ +HSG +P   ++
Sbjct: 11  KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 9/69 (13%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQ-MKPRPYKCDTCE--------KSFTNSQNLNTHQLIH 94
              + C + F     L++H   + +         C         KSF     L  H  +H
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85

Query: 95  SGIRPFKCT 103
           +G +    +
Sbjct: 86  TGEKSGPSS 94

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +PY+C  C K+F    +LN H+ +H+G R    
Sbjct: 11  KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K+F+ +  L  HQ IH+G +P   ++
Sbjct: 11  KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY+C+ C K+F+   +L THQ IH+G +P   +
Sbjct: 11  KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           R Y+C  C K+F     L  HQ IH+G +P   ++
Sbjct: 11  RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           + ++C  C K+FT    L+ HQ IH+G +P   +
Sbjct: 11  KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
           +   C+ C K F +  +LN H+L HSG +P+     
Sbjct: 11  KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY C+ C KSF    +LN H+ IH+G +P   +
Sbjct: 11  KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.3 bits (108), Expect = 1e-07
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC  C K+F ++ +   HQ +H+G RP   +
Sbjct: 11  KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY+CD C K+F++  +L  HQ +HSG +P   +
Sbjct: 11  KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P KC  C K+F     L  HQ  H   +    ++
Sbjct: 11  KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + ++C  C + FT   +LN HQ IH+G +P   ++
Sbjct: 11  KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +PY C+ C   F + Q L +H  IH+G  P 
Sbjct: 10  KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C+ C K+F+ +  L  HQ +H+G +P   ++
Sbjct: 11  KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K FT + +L  H+ IH+G +P   ++
Sbjct: 11  KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K+F    +L  HQ  HSG +P   +
Sbjct: 11  KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           RPY+C  C K+F    +L  H+  H+G +P   +
Sbjct: 11  RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           R Y+C  C K+F     L+ HQ IH G +P   +
Sbjct: 11  RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 57  SSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSF 109
           S          + R + C    C K++  S +L  H   H+G +PF C+   C++ F
Sbjct: 3   SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 44 HKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIH 94
          H C +  C K + + S L +H       +P+ C    CE+ F  S  L+ H+  H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C  C K+F++   L  H   HSG +P   ++
Sbjct: 11  KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +PY+C+ C+K+F    NL  HQ  H+G      
Sbjct: 11  KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PYKC+ C K FT + +L  H+ IH+G +P   +
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +P++C  C KSF+ +  L  HQ IH+G  P   +
Sbjct: 11  KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC  C K F  + +L  HQLIH+G +P   ++
Sbjct: 11  KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 44.8 bits (107), Expect = 2e-07
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +PYKC+TC   F    +L  H LIH+G  P 
Sbjct: 10  KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY C  C K+F+    L  HQ  H+G++P   ++
Sbjct: 11  KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY+C  C K+FT   +L  HQ  H+G +P   +
Sbjct: 11  KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K FT + +L  H+ IH+G +P   ++
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.5 bits (106), Expect = 3e-07
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +P+KC+ C K F  +    +HQ  HSG +P   +
Sbjct: 11  KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.4 bits (106), Expect = 3e-07
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PYKC+ C K FT + +L  H+ +H+G +P   ++
Sbjct: 11  KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 44.4 bits (106), Expect = 3e-07
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
            PY+C  C K+F     L +HQ  H+G      
Sbjct: 9   NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +PY+C  C K+F+ + +L  HQ +H+G +P   ++
Sbjct: 11  KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.7 bits (104), Expect = 7e-07
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
            PY+C  C K+F+    L +HQ  H+G +P   ++
Sbjct: 11  NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.3 bits (103), Expect = 7e-07
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
           +PY C+ C K+F+    L+ HQ  H+G +P   +
Sbjct: 11  KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.3 bits (103), Expect = 8e-07
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
            PY+C  C K F+    L +HQ  HSG      
Sbjct: 11  NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           +P++C  C  +F+ S +L  H   H    P   ++
Sbjct: 11  KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 13/32 (40%), Positives = 14/32 (43%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK 101
            PY C  C KSFT   +L  HQ   S   P  
Sbjct: 10  TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 42.5 bits (101), Expect = 2e-06
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           PY C+ C K+F +   L  H   H+G      
Sbjct: 12  PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
           + + CD C K+F     L  HQ +H G +    ++
Sbjct: 11  KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 16/53 (30%), Positives = 19/53 (35%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          + CE C     + S L  H       RPY C  C  SF    NL  H    + 
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 42.0 bits (98), Expect = 3e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 72  YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT 124
           Y C+ C         L  H   H+ +RP+ CT C+ SF  + N  + H  +  
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGN-LTKHMKSKA 53

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 41.8 bits (99), Expect = 3e-06
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           R Y+C  C KSF    +L  H+ IH+G  P 
Sbjct: 9   RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 41.7 bits (99), Expect = 3e-06
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 71  PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           PY+C+ C K+F     L  H+  H+G+     
Sbjct: 12  PYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 41.8 bits (99), Expect = 3e-06
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
           +PY+CD C K+F+   +L  H  +H+G  P 
Sbjct: 10  KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 41.0 bits (97), Expect = 5e-06
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQ-LIHSGIRPFKCTT 104
           +PY+C  C K+F  + +L  H    H+G +P   ++
Sbjct: 11  KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 44  HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
            KC  C  +F ++S+L          +   C+ C K       LN  +   SG +  
Sbjct: 19  QKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 21/79 (26%)

Query: 83  NSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY 142
           +S +    Q IH G R  KC+ C   F+ +             S L++         K  
Sbjct: 2   SSGSSGKRQKIHLGDRSQKCSKCGIIFIRR-------------STLSRR--------KTP 40

Query: 143 QCDRCSQFFGDRMNLISHH 161
            C++C +       L    
Sbjct: 41  MCEKCRKDSCQEAALNKDE 59

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
           P+KC  C++ FT    L  H+  H+ 
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHAR 37

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 38.1 bits (89), Expect = 7e-05
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           +PY C  C+++F+++  L  HQ +H+       
Sbjct: 9   KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.6 bits (88), Expect = 9e-05
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           + Y C+ C K+FT   +L  HQ IH+       
Sbjct: 11  KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 5/71 (7%)

Query: 44  HKCEYCHKVFDQQSSLLSH-----NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
            +C+ C   +D    L  H     +           +    S    ++L   +      +
Sbjct: 20  FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79

Query: 99  PFKCTTCDKSF 109
             KC  C  SF
Sbjct: 80  VLKCMYCGHSF 90

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 14/120 (11%)

Query: 54  DQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLI--HSGIRPFKCTTCDKSFVN 111
              SS   +         ++C  C  ++     L  H     H      +    +    +
Sbjct: 2   SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61

Query: 112 QINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHC-HKHKQSCL 170
           +    S       +              K  +C  C   F    +L  H    KH Q   
Sbjct: 62  KPRKRSLLEMEGKEDA-----------QKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.86
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.83
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.81
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.8
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.8
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.8
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.78
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.75
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.75
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.72
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.71
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.69
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.67
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.66
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.66
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.65
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.63
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.62
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.61
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.6
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.6
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.59
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.59
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.58
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.58
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.56
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.56
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.55
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.55
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.53
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.53
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.51
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.51
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.51
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.5
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.49
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.49
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.48
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.47
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.47
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.45
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.45
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.44
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.43
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.43
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.42
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.4
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.39
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.38
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.36
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.36
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.36
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.33
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.3
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.28
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.27
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.27
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.24
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.24
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.19
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.19
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.18
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.17
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.17
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.17
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.17
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.15
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.15
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.14
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.14
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.13
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.13
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.13
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.11
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.11
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.11
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.1
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.1
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.09
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.08
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.08
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.07
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.07
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.06
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.06
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.05
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.05
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.03
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.02
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.02
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.02
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.01
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.01
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.01
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.0
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.0
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.0
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.99
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.96
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.95
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.93
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.92
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.91
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.91
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.89
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.89
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.89
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.88
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.88
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.88
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.87
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.87
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.84
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.82
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.78
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.78
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.74
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.7
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.7
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.68
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.67
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.66
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.64
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.64
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.56
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.53
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.52
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.52
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.49
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.42
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.4
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.39
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.38
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.38
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.37
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.36
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.35
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.33
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.33
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.3
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.29
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.28
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.27
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.27
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.6
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.27
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.26
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.26
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.24
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.55
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.18
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.18
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.17
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.17
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.16
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.15
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.13
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.13
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.38
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.04
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.02
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.97
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.9
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.89
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.87
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.86
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.84
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.83
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.82
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.79
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.76
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.93
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.74
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.73
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.71
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.86
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.68
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.67
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.65
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.62
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.74
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.18
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.39
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.32
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.31
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.17
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.61
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.12
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.24
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.2
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	93.08
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	92.93
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.38
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	91.03
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	90.47
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	90.01
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	88.77
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	87.22
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	86.19
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	85.8
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	85.73
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	85.43
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	85.23
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	84.42
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	83.84
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	83.52
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	83.38
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	83.38
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	82.35
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	81.34

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=7.4e-33  Score=203.70  Aligned_cols=165  Identities=28%  Similarity=0.543  Sum_probs=127.2

Q ss_pred             ccceeeeechhhhhhhCCCCccccCcccchhhcccCC----------CceecCccccccCChhHHhhcccCCCCCCCccC
Q psy11761          5 TPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANA----------GVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC   74 (198)
Q Consensus         5 ~~~l~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~~----------~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   74 (198)
                      .+.|.     .|++.|.++++|.|+.|++.|.....+          .+|.|..|++.|.....|..|+..|+++++|.|
T Consensus         6 ~~~l~-----~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   80 (190)
T 2i13_A            6 SSSSV-----AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC   80 (190)
T ss_dssp             ------------------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEEC
T ss_pred             hccch-----hhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccC
Confidence            45666     899999999999999999999766443          378999999999999999999999999999999


Q ss_pred             ccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcCh
Q psy11761         75 DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDR  154 (198)
Q Consensus        75 ~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~  154 (198)
                      +.|++.|.....|..|++.|.++++|.|+.|++.|.+             .+.|..|++.|+ ++++|.|++|++.|.+.
T Consensus        81 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~  146 (190)
T 2i13_A           81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ-------------LAHLRAHQRTHT-GEKPYKCPECGKSFSRE  146 (190)
T ss_dssp             TTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESS-------------HHHHHHHHHHHH-CCCCEECTTTCCEESCH
T ss_pred             cccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCC-------------HHHHHHHHHHhC-CCCCeECCCCCcccCCH
Confidence            9999999999999999999999999999999999998             899999999988 78999999999999999


Q ss_pred             hHHHhhhhhhCCCCCCCcccccccCCCcccchhccc
Q psy11761        155 MNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSG  190 (198)
Q Consensus       155 ~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (198)
                      +.|..|+++|++++  +|.|..|++.+.+...+..+
T Consensus       147 ~~L~~H~~~H~~~~--~~~C~~C~~~f~~~~~L~~H  180 (190)
T 2i13_A          147 DNLHTHQRTHTGEK--PYKCPECGKSFSRRDALNVH  180 (190)
T ss_dssp             HHHHHHHHHHHCCC--CEECTTTCCEESSHHHHHHH
T ss_pred             HHHHHHHHhcCCCC--CeECCCCCCccCCHHHHHHH
Confidence            99999999999988  57788899888877665544

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=9.5e-33  Score=203.13  Aligned_cols=151  Identities=30%  Similarity=0.610  Sum_probs=133.3

Q ss_pred             CCccccceeeeechhhhhhhCCCCccccCcccchhhcccCCC----------ceecCccccccCChhHHhhcccCCCCCC
Q psy11761          1 MFTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAG----------VHKCEYCHKVFDQQSSLLSHNCPQMKPR   70 (198)
Q Consensus         1 ~f~~~~~l~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~~~----------~~~C~~C~~~f~~~~~l~~H~~~h~~~~   70 (198)
                      .|.....|.     .|++.|.++++|.|+.|++.|.....+.          +|.|..|++.|.....|..|+..|++++
T Consensus        30 ~f~~~~~l~-----~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  104 (190)
T 2i13_A           30 SFSRSDHLA-----EHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK  104 (190)
T ss_dssp             -CCSSHHHH-----HGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCC
T ss_pred             ccCCHHHHH-----HHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCC
Confidence            366777888     9999999999999999999998765543          7999999999999999999999999999


Q ss_pred             CccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhh
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQF  150 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~  150 (198)
                      +|.|+.|++.|.....|..|+++|.++++|.|+.|++.|.+             .+.|..|++.|+ ++++|.|++|++.
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~H~-~~~~~~C~~C~~~  170 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR-------------EDNLHTHQRTHT-GEKPYKCPECGKS  170 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC-------------HHHHHHHHHHHH-CCCCEECTTTCCE
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCC-------------HHHHHHHHHhcC-CCCCeECCCCCCc
Confidence            99999999999999999999999999999999999999998             999999999998 7999999999999


Q ss_pred             hcChhHHHhhhhhhCCCCCC
Q psy11761        151 FGDRMNLISHHCHKHKQSCL  170 (198)
Q Consensus       151 f~~~~~L~~H~~~~~~~~~~  170 (198)
                      |.+...|..|+++|++++||
T Consensus       171 f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          171 FSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             ESSHHHHHHHHTTC------
T ss_pred             cCCHHHHHHHHHhcCCCCCC
Confidence            99999999999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=1.7e-27  Score=174.98  Aligned_cols=152  Identities=22%  Similarity=0.397  Sum_probs=124.0

Q ss_pred             CCCCcccc--CcccchhhcccCC----------Cceec--CccccccCChhHHhhcccCCCCCCCccCc--cchhcccCc
Q psy11761         21 GNDNAYKC--HQCQRLIFLSANA----------GVHKC--EYCHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNS   84 (198)
Q Consensus        21 ~~~~~~~C--~~C~~~f~~~~~~----------~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~   84 (198)
                      .+.++|.|  +.|++.|.....|          .+|.|  ..|++.|.....|..|+.+|+++++|.|+  .|++.|...
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~   87 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTK   87 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCH
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCH
Confidence            45678888  6788888765443          37888  78999999999999999999988999998  899999999


Q ss_pred             hhHHHhh-hhc-CCCCcccC--CcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCc--chhhhcChhHHH
Q psy11761         85 QNLNTHQ-LIH-SGIRPFKC--TTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLI  158 (198)
Q Consensus        85 ~~l~~H~-~~h-~~~k~~~C--~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~--C~k~f~~~~~L~  158 (198)
                      ..|..|+ +.| .++++|.|  +.|++.|.+             .+.|..|++.|+ ++++|.|++  |++.|.+.+.|.
T Consensus        88 ~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~-------------~~~L~~H~~~H~-~~~~~~C~~~~C~k~F~~~~~L~  153 (190)
T 1tf6_A           88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKK-------------HNQLKVHQFSHT-QQLPYECPHEGCDKRFSLPSRLK  153 (190)
T ss_dssp             HHHHHHHHTTSSTTTSCCEECSSSSCEECSS-------------HHHHHHHHGGGS-SSCSSBCCSSSCCCBCSSHHHHH
T ss_pred             HHHHHHHHHhcCCCcceeeCCCCCCccccCC-------------HHHHHHHHHHhC-CCCCccCCCCCCCchhcCHHHHH
Confidence            9999998 666 46788999  889999988             888999998887 788999977  999999999999


Q ss_pred             hhhhhhCCCCCCCccccc---ccCCCcccchhcccc
Q psy11761        159 SHHCHKHKQSCLPFISRL---FGFDDGDKVAKFSGR  191 (198)
Q Consensus       159 ~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  191 (198)
                      .|+++|++     |.|..   |++.+.+...+..+.
T Consensus       154 ~H~~~H~~-----~~C~~~~~C~~~f~~~~~l~~H~  184 (190)
T 1tf6_A          154 RHEKVHAG-----YPCKKDDSCSFVGKTWTLYLKHV  184 (190)
T ss_dssp             HHHTSSCS-----CCCCSTTTCCCCCSCHHHHHHHH
T ss_pred             HHHHHhCC-----CcCCCCCcCCCccccHHHHHHHH
Confidence            99988877     66777   888887776655443

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=1e-26  Score=170.87  Aligned_cols=144  Identities=24%  Similarity=0.519  Sum_probs=129.0

Q ss_pred             CccccceeeeechhhhhhhCCCCcccc--CcccchhhcccCC----------CceecC--ccccccCChhHHhhcc-cCC
Q psy11761          2 FTQTPNLVLFSQQTLLCIHGNDNAYKC--HQCQRLIFLSANA----------GVHKCE--YCHKVFDQQSSLLSHN-CPQ   66 (198)
Q Consensus         2 f~~~~~l~~~~~~~h~~~h~~~~~~~C--~~C~~~f~~~~~~----------~~~~C~--~C~~~f~~~~~l~~H~-~~h   66 (198)
                      |.+...|.     .|+++|.++++|.|  +.|++.|.....+          .+|.|.  .|++.|.....|..|+ ..|
T Consensus        24 f~~~~~L~-----~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h   98 (190)
T 1tf6_A           24 YNKNWKLQ-----AHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH   98 (190)
T ss_dssp             CSSHHHHH-----HHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTS
T ss_pred             hCCHHHHH-----HHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhc
Confidence            66677777     99999999999999  8899999765443          379999  8999999999999999 666


Q ss_pred             -CCCCCccC--ccchhcccCchhHHHhhhhcCCCCcccCCc--CchhhhcccCCCcccCCCcCcccccccccccccCCCC
Q psy11761         67 -MKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKP  141 (198)
Q Consensus        67 -~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~  141 (198)
                       .+.++|.|  +.|++.|.....|..|+++|.++++|.|+.  |++.|.+             .+.|..|++.|+ +   
T Consensus        99 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~-------------~~~L~~H~~~H~-~---  161 (190)
T 1tf6_A           99 NIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL-------------PSRLKRHEKVHA-G---  161 (190)
T ss_dssp             STTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSS-------------HHHHHHHHTSSC-S---
T ss_pred             CCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcC-------------HHHHHHHHHHhC-C---
Confidence             46789999  899999999999999999999999999988  9999998             999999999987 4   


Q ss_pred             eeCCc---chhhhcChhHHHhhhhhhCCC
Q psy11761        142 YQCDR---CSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       142 ~~C~~---C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      |.|+.   |++.|.+...|..|+++|+++
T Consensus       162 ~~C~~~~~C~~~f~~~~~l~~H~~~h~~e  190 (190)
T 1tf6_A          162 YPCKKDDSCSFVGKTWTLYLKHVAECHQD  190 (190)
T ss_dssp             CCCCSTTTCCCCCSCHHHHHHHHTTCC--
T ss_pred             CcCCCCCcCCCccccHHHHHHHHHhhcCC
Confidence            89999   999999999999999999874

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=3.5e-26  Score=162.53  Aligned_cols=133  Identities=33%  Similarity=0.608  Sum_probs=116.1

Q ss_pred             Cccccceeeeechhhhh---hhCCCCccccCcccchhhcccCCCceecCccccccCChhHHhhcccCCCCCCCccCcc--
Q psy11761          2 FTQTPNLVLFSQQTLLC---IHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDT--   76 (198)
Q Consensus         2 f~~~~~l~~~~~~~h~~---~h~~~~~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--   76 (198)
                      |.+..+|.     .|++   +|.++++|.|+.|+             |..|++.|.....|..|+..|+++++|.|+.  
T Consensus        13 f~~~~~L~-----~H~~~~h~h~~~~~~~C~~c~-------------C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~   74 (155)
T 2gli_A           13 FDSQEQLV-----HHINSEHIHGERKEFVCHWGG-------------CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG   74 (155)
T ss_dssp             CSCHHHHH-----HHHHHHTSSSCSSCCCCCBTT-------------CTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTT
T ss_pred             cCCHHHHH-----HHHHhhccCCCCcceeCCCCC-------------ccchhhhhhhHHHHHHHHHhcCCCCCccCCCCC
Confidence            56666677     8876   67777788887653             6778899999999999999999999999985  


Q ss_pred             chhcccCchhHHHhhhhcCCCCcccCCc--CchhhhcccCCCcccCCCcCcccccccc-cccccCCCCeeCCc--chhhh
Q psy11761         77 CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHS-CMNSHFPKPYQCDR--CSQFF  151 (198)
Q Consensus        77 C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~-~~~~~~~~~~~C~~--C~k~f  151 (198)
                      |++.|.....|..|+++|.++++|.|+.  |++.|.+             .+.|..|+ +.|. ++++|.|++  |++.|
T Consensus        75 C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~L~~H~~~~H~-~~~~~~C~~~~C~~~f  140 (155)
T 2gli_A           75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN-------------ASDRAKHQNRTHS-NEKPYVCKLPGCTKRY  140 (155)
T ss_dssp             CCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESS-------------SSTTHHHHHHTTC-SCCCEECCSTTTCCEE
T ss_pred             CCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCC-------------HHHHHHHHHHhcC-CCCCeeCCCCCCcccc
Confidence            9999999999999999999999999998  9999998             88999998 6666 789999988  99999


Q ss_pred             cChhHHHhhhhhhCC
Q psy11761        152 GDRMNLISHHCHKHK  166 (198)
Q Consensus       152 ~~~~~L~~H~~~~~~  166 (198)
                      .+.+.|..|+++|||
T Consensus       141 ~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          141 TDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SSHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHhhcC
Confidence            999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=4e-25  Score=153.45  Aligned_cols=113  Identities=20%  Similarity=0.211  Sum_probs=101.8

Q ss_pred             HhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccC
Q psy11761         59 LLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF  138 (198)
Q Consensus        59 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~  138 (198)
                      +..|..++.|+++|.|++|++.|.....|..|+++|.+++||.|+.|++.|.+             .+.|..|++.|. +
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~-------------~~~L~~H~~~H~-~   75 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPL-------------AEYRTKHEIHHT-G   75 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESS-------------HHHHHHHHHHHH-T
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeeccc-------------ccchhhhccccC-C
Confidence            34456778899999999999999999999999999999999999999999998             999999999988 8


Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCCCCC----CcccccccCCCcccc
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQSCL----PFISRLFGFDDGDKV  185 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~----~~~~~~~~~~~~~~~  185 (198)
                      +++|.|++||+.|.+.+.|..|+++||+++|+    +|.|..|+..+....
T Consensus        76 ~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             CCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             CccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            99999999999999999999999999988764    578999987665443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=5.9e-24  Score=145.36  Aligned_cols=114  Identities=28%  Similarity=0.564  Sum_probs=105.0

Q ss_pred             CCCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhh---cCCCCcccCCcCchhhhcccCCC
Q psy11761         40 NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLI---HSGIRPFKCTTCDKSFVNQINPT  116 (198)
Q Consensus        40 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~---h~~~k~~~C~~C~~~f~~~~~~~  116 (198)
                      ...+|.|..|++.|.....|..|+..|+++++|.|+.|++.|.....|..|++.   +.++++|.|++|++.|.+     
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~-----   78 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRR-----   78 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESS-----
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCC-----
Confidence            345788999999999999999999999999999999999999999999999985   578899999999999998     


Q ss_pred             cccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        117 STHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       117 ~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                              ...|..|++.|+ ++++|.|++|++.|.+.+.|..|++.+|+.
T Consensus        79 --------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           79 --------RMELRLHMVSHT-GEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             --------HHHHHHHHHHHS-SSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             --------HHHHHHHHHHcC-CCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence                    999999999988 799999999999999999999999865543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=7.9e-24  Score=150.42  Aligned_cols=118  Identities=24%  Similarity=0.439  Sum_probs=108.6

Q ss_pred             CCceecCccccccCChhHHhhcccC-CCCCCC--------ccCccchhcccCchhHHHhhhhcCCCCcccCCc--Cchhh
Q psy11761         41 AGVHKCEYCHKVFDQQSSLLSHNCP-QMKPRP--------YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSF  109 (198)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f  109 (198)
                      ...|.|..|++.|.....|..|+.. |.+..+        |.|+.|++.|.....|..|+++|.++++|.|..  |++.|
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f  102 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF  102 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEE
T ss_pred             hcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCcc
Confidence            3478999999999999999999987 655544        899999999999999999999999999999998  99999


Q ss_pred             hcccCCCcccCCCcCcccccccccccccCCCCeeCCc--chhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        110 VNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      .+             ...|..|++.|+ ++++|.|++  |++.|.+.+.|..|+++|++++||++
T Consensus       103 ~~-------------~~~L~~H~~~h~-~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c  153 (155)
T 2rpc_A          103 AR-------------SENLKIHKRTHT-GEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS  153 (155)
T ss_dssp             SC-------------HHHHHHHHTTTC-SSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCS
T ss_pred             CC-------------HHHHHHHHHhhC-CCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCC
Confidence            98             999999999998 789999997  99999999999999999999997654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.88  E-value=4.3e-24  Score=146.24  Aligned_cols=114  Identities=34%  Similarity=0.635  Sum_probs=102.3

Q ss_pred             CceecC--ccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc--CchhhhcccCCCc
Q psy11761         42 GVHKCE--YCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTS  117 (198)
Q Consensus        42 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~  117 (198)
                      .+|.|+  .|++.|.....|..|+..| +.++|.|+.|++.|.....|..|++.|.++++|.|+.  |++.|.+      
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~------   76 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL------   76 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESC------
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCC------
Confidence            367888  8999999999999999988 8899999999999999999999999999999999986  9999998      


Q ss_pred             ccCCCcCcccccccccccccCCCCeeCC--cchhhhcChhHHHhhhhhhCCCCCC
Q psy11761        118 THTPTYTKSNLAQHSCMNSHFPKPYQCD--RCSQFFGDRMNLISHHCHKHKQSCL  170 (198)
Q Consensus       118 ~~~~~~~~~~l~~H~~~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~~~~~~  170 (198)
                             .+.|..|++.|+ ++++|.|+  .|++.|.+.+.|..|+++|++++++
T Consensus        77 -------~~~l~~H~~~h~-~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           77 -------DFNLRTHVRIHT-GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             -------HHHHHHHHHHHH-CCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             -------HHHHHHHHHHhC-CCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence                   999999999998 78999996  5999999999999999999998865

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.1e-23  Score=149.55  Aligned_cols=132  Identities=24%  Similarity=0.411  Sum_probs=116.6

Q ss_pred             ceecCccccccCChhHHhhccc---CCCCCCCccCccc-----hhcccCchhHHHhhhhcCCCCcccCCc--Cchhhhcc
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNC---PQMKPRPYKCDTC-----EKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQ  112 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~---~h~~~~~~~C~~C-----~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~  112 (198)
                      ++.|..|++.|.....|..|+.   .|.+.++|.|+.|     ++.|.....|..|++.|.++++|.|+.  |++.|.+ 
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-   81 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR-   81 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSS-
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccC-
Confidence            5789999999999999999998   7888999998753     489999999999999999999999985  9999998 


Q ss_pred             cCCCcccCCCcCcccccccccccccCCCCeeCCc--chhhhcChhHHHhhh-hhhCCCCCCCccccc--ccCCCcccchh
Q psy11761        113 INPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLISHH-CHKHKQSCLPFISRL--FGFDDGDKVAK  187 (198)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~--C~k~f~~~~~L~~H~-~~~~~~~~~~~~~~~--~~~~~~~~~~~  187 (198)
                                  ...|..|++.|+ ++++|.|++  |++.|.+.+.|..|+ ..|.+++|  |.|..  |++.+.+...+
T Consensus        82 ------------~~~l~~H~~~h~-~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~--~~C~~~~C~~~f~~~~~L  146 (155)
T 2gli_A           82 ------------LENLKTHLRSHT-GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP--YVCKLPGCTKRYTDPSSL  146 (155)
T ss_dssp             ------------HHHHHHHHHHTT-TCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC--EECCSTTTCCEESSHHHH
T ss_pred             ------------HHHHHHHHHHcC-CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC--eeCCCCCCccccCCHHHH
Confidence                        999999999988 789999998  999999999999999 78888885  55655  99988877665


Q ss_pred             ccc
Q psy11761        188 FSG  190 (198)
Q Consensus       188 ~~~  190 (198)
                      ..+
T Consensus       147 ~~H  149 (155)
T 2gli_A          147 RKH  149 (155)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=8.2e-24  Score=143.70  Aligned_cols=110  Identities=33%  Similarity=0.747  Sum_probs=101.8

Q ss_pred             CCceecCc--cccccCChhHHhhcccCCCCCCCccCc--cchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCC
Q psy11761         41 AGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT  116 (198)
Q Consensus        41 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~  116 (198)
                      .++|.|..  |++.|.....|..|+..|.++++|.|+  .|++.|.....|..|+++|.++++|.|+.|++.|.+     
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-----   78 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSR-----   78 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC-----
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCC-----
Confidence            34677876  999999999999999999999999999  799999999999999999999999999999999998     


Q ss_pred             cccCCCcCcccccccccccccCCCCeeC--CcchhhhcChhHHHhhhhhh
Q psy11761        117 STHTPTYTKSNLAQHSCMNSHFPKPYQC--DRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       117 ~~~~~~~~~~~l~~H~~~~~~~~~~~~C--~~C~k~f~~~~~L~~H~~~~  164 (198)
                              .+.|..|++.|+ ++++|.|  +.|++.|.+.+.|..|+++|
T Consensus        79 --------~~~l~~H~~~h~-~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           79 --------SDHLKTHTRTHT-GEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             --------HHHHHHHHHHHH-TCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             --------HHHHHHHHHHhc-CCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence                    899999999988 7899999  89999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.86  E-value=1.1e-23  Score=146.13  Aligned_cols=109  Identities=25%  Similarity=0.429  Sum_probs=95.8

Q ss_pred             hhhhhhCCCCccccCcccchhhcccCCCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhc
Q psy11761         15 TLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        15 ~h~~~h~~~~~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   94 (198)
                      .|+++|.|+++|.|                  .+|++.|.....|..|+++|+++++|.|+.|++.|.....|..|+++|
T Consensus        12 h~~~~h~Gek~y~C------------------~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   73 (133)
T 2lt7_A           12 HYELIVDGRVYYIC------------------IVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH   73 (133)
T ss_dssp             EEEEEETTEEEEEE------------------TTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             hceeecCCCcCeEC------------------CCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhcccc
Confidence            55677788777665                  567778888999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccC-----CCCeeCCcchhhhcCh
Q psy11761         95 SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-----PKPYQCDRCSQFFGDR  154 (198)
Q Consensus        95 ~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~-----~~~~~C~~C~k~f~~~  154 (198)
                      ++++||.|++|++.|.+             .+.|..|++.+++.     .++|+|..|++.|...
T Consensus        74 ~~~k~~~C~~C~k~F~~-------------~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           74 TGERRYQCLACGKSFIN-------------YQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HTCCCEEESSSCCEESS-------------HHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             CCCccccCCCCCCCcCC-------------HHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            99999999999999998             99999999998732     2569999999988654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=5e-21  Score=129.31  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=93.8

Q ss_pred             hhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhh--cCCCCccc-CCcCchhh--hcccCCCcccCCCcCcccccc
Q psy11761         56 QSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLI--HSGIRPFK-CTTCDKSF--VNQINPTSTHTPTYTKSNLAQ  130 (198)
Q Consensus        56 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~k~~~-C~~C~~~f--~~~~~~~~~~~~~~~~~~l~~  130 (198)
                      ...|..|+++|+++++|.|+.|++.|.....|..|++.  |.+.+++. |+.|++.|  ..             ...|..
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~-------------~~~l~~   70 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR-------------KRSLLE   70 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCC-------------CCCCCC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCccccccc-------------HHHHHH
Confidence            46789999999999999999999999999999999998  77777654 99999998  77             889999


Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCccc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFIS  174 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~  174 (198)
                      |++.|. ++++|.|++|++.|.+.+.|..|++.|+..+..+..+
T Consensus        71 H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~  113 (115)
T 2dmi_A           71 MEGKED-AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS  113 (115)
T ss_dssp             CCCSCC-CCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCCCC
T ss_pred             HhhccC-CCcceECCCCCCccCCHHHHHHHHHHhCCcccCCCCC
Confidence            999988 7999999999999999999999999998776555443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.82  E-value=1.7e-21  Score=132.13  Aligned_cols=109  Identities=21%  Similarity=0.444  Sum_probs=98.9

Q ss_pred             CCCCCccCcc--chhcccCchhHHHhhhhcCCCCcccCC--cCchhhhcccCCCcccCCCcCcccccccccccccCCCCe
Q psy11761         67 MKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (198)
Q Consensus        67 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~--~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~  142 (198)
                      .++++|.|..  |++.|.....|..|++.|.++++|.|+  .|++.|.+             ...|..|++.|+ ++++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~   67 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSR-------------SDQLKRHQRRHT-GVKPF   67 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESS-------------HHHHHHHHHHHH-CCCCE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCC-------------HHHHHHHHHHcC-CCCCc
Confidence            4678999997  999999999999999999999999999  79999998             999999999988 79999


Q ss_pred             eCCcchhhhcChhHHHhhhhhhCCCCCCCcccccccCCCcccchhcc
Q psy11761        143 QCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFS  189 (198)
Q Consensus       143 ~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (198)
                      .|++|++.|.+...|..|+++|+++++|.|.++.|+..+.+...+..
T Consensus        68 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~  114 (119)
T 2jp9_A           68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVR  114 (119)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHH
T ss_pred             cCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHH
Confidence            99999999999999999999999999766655899998887665544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=9.1e-21  Score=129.37  Aligned_cols=110  Identities=26%  Similarity=0.474  Sum_probs=98.2

Q ss_pred             CCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCccccccccccc--ccCCCCeeC
Q psy11761         67 MKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN--SHFPKPYQC  144 (198)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~--~~~~~~~~C  144 (198)
                      .+.++|.|+.|++.|.....|..|++.|.++++|.|+.|++.|.+             ...|..|+..+  +.++++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~~~~~~~~~~~~C   69 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFR-------------KENLLEHEARNCMNRSEQVFTC   69 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSS-------------HHHHHHHHHHCCCCSCCCCEEC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcC-------------HHHHHHHHhhhhcCCCCCCeEC
Confidence            467899999999999999999999999999999999999999998             89999999863  236889999


Q ss_pred             CcchhhhcChhHHHhhhhhhCCCCCCCcccccccCCCcccchhcccc
Q psy11761        145 DRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSGR  191 (198)
Q Consensus       145 ~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (198)
                      ++|++.|.+...|..|+++|++++  +|.|..|++.+.+...+..+.
T Consensus        70 ~~C~~~f~~~~~l~~H~~~h~~~~--~~~C~~C~~~f~~~~~l~~H~  114 (124)
T 2dlq_A           70 SVCQETFRRRMELRLHMVSHTGEM--PYKCSSCSQQFMQKKDLQSHM  114 (124)
T ss_dssp             SSSCCEESSHHHHHHHHHHHSSSC--SEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHcCCCC--CccCCCccchhCCHHHHHHHH
Confidence            999999999999999999999988  577888999888776665553

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=4.1e-20  Score=122.93  Aligned_cols=93  Identities=29%  Similarity=0.624  Sum_probs=86.9

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeC
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC  144 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C  144 (198)
                      .....++|.|+.|++.|.....|..|++.|.++++|.|+.|++.|..             ...|..|++.|+ ++++|.|
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C   76 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR-------------QDHLRDHRYIHS-KEKPFKC   76 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC-------------HHHHHHHGGGSC-CCCTTSC
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC-------------HHHHHHHHHHhC-CCCCeEC
Confidence            44567899999999999999999999999999999999999999998             899999999998 7899999


Q ss_pred             CcchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761        145 DRCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus       145 ~~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      ++|++.|.+...|..|+++|++++||+
T Consensus        77 ~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           77 QECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             SSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             CCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence            999999999999999999999999765

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.80  E-value=2.4e-20  Score=127.48  Aligned_cols=109  Identities=26%  Similarity=0.402  Sum_probs=95.0

Q ss_pred             CCCCccCc--cchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCC
Q psy11761         68 KPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD  145 (198)
Q Consensus        68 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~  145 (198)
                      .+++|.|+  .|++.|.....|..|+++| +.++|.|+.|++.|.+             ...|..|++.|+ ++++|.|+
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~   66 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVE-------------SSKLKRHQLVHT-GEKPFQCT   66 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESS-------------HHHHHHHGGGTS-CCCCEECC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCC-------------HHHHHHHHHHcC-CCCCeeCC
Confidence            35789999  8999999999999999999 8899999999999998             999999999988 78999998


Q ss_pred             c--chhhhcChhHHHhhhhhhCCCCCCCcccccccCCCcccchhcccc
Q psy11761        146 R--CSQFFGDRMNLISHHCHKHKQSCLPFISRLFGFDDGDKVAKFSGR  191 (198)
Q Consensus       146 ~--C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (198)
                      +  |++.|.+.+.|..|+++|+++++|.|....|+..+.+...+..+.
T Consensus        67 ~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~  114 (124)
T 1ubd_C           67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI  114 (124)
T ss_dssp             STTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHH
T ss_pred             CCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHH
Confidence            6  999999999999999999999976655567888888776665543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.80  E-value=6.7e-21  Score=135.21  Aligned_cols=112  Identities=26%  Similarity=0.470  Sum_probs=101.1

Q ss_pred             hCCCCccccCcccchhhcccCCC-----------c--------eecCccccccCChhHHhhcccCCCCCCCccCcc--ch
Q psy11761         20 HGNDNAYKCHQCQRLIFLSANAG-----------V--------HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDT--CE   78 (198)
Q Consensus        20 h~~~~~~~C~~C~~~f~~~~~~~-----------~--------~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~   78 (198)
                      +.++.+|.|..|++.|.....|.           +        |.|..|++.|.....|..|+.+|+++++|.|+.  |+
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            45667899999999887654332           1        789999999999999999999999999999998  99


Q ss_pred             hcccCchhHHHhhhhcCCCCcccCCc--CchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCC
Q psy11761         79 KSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD  145 (198)
Q Consensus        79 ~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~  145 (198)
                      +.|.....|..|+++|.++++|.|+.  |++.|..             .+.|..|++.|+ ++++|.|.
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~-------------~~~L~~H~~~H~-~~k~~~c~  154 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN-------------SSDRKKHMHVHT-SDKSGPSS  154 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSS-------------HHHHHHSSTTTT-SCCCSCSC
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCC-------------HHHHHHHHHHhc-CCCCCCCC
Confidence            99999999999999999999999997  9999998             999999999998 89999985

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=5.2e-20  Score=120.21  Aligned_cols=90  Identities=30%  Similarity=0.613  Sum_probs=82.9

Q ss_pred             CCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCC
Q psy11761         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD  145 (198)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~  145 (198)
                      +.++++|.|+.|++.|.....|..|++.|.++++|.|+.|++.|..             ...|..|++.|+ ++++|.|+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~   68 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD-------------SSSLNKHLRIHS-DERPFKCQ   68 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESS-------------HHHHHHHHHHSC-CCCCEECS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCC-------------HHHHHHHHHHhC-CCCCccCC
Confidence            4567899999999999999999999999999999999999999998             899999999988 78999999


Q ss_pred             cchhhhcChhHHHhhhhhhCCCCC
Q psy11761        146 RCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus       146 ~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      +|++.|.+.+.|..|+++|+++++
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           69 ICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCCCccCCHHHHHHHHHHhcCCCC
Confidence            999999999999999999998875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.78  E-value=5.4e-20  Score=122.70  Aligned_cols=98  Identities=16%  Similarity=0.348  Sum_probs=88.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPK  140 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~  140 (198)
                      .++++|.++++|.|+.|++.|.....|..|+++|  .++|.|+.|++.|..             ...|..|++ |. +++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~-------------~~~l~~H~~-H~-~~~   68 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFS-------------PELKQEHES-KC-EYK   68 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSS-------------HHHHHHHHH-HC-STG
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCC-------------HHHHHHHHH-cC-CCC
Confidence            4677889999999999999999999999999998  478999999999998             899999995 66 899


Q ss_pred             CeeCCcchhhhcChhHHHhhhh-hhCCCCCCCcccc
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHC-HKHKQSCLPFISR  175 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~-~~~~~~~~~~~~~  175 (198)
                      +|+|++|++.|.+...|..|++ .|.++++|+..-+
T Consensus        69 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~p  104 (107)
T 1wjp_A           69 KLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGP  104 (107)
T ss_dssp             GGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCCCS
T ss_pred             CccCccccchhCCHHHHHHHHHHHcCCCCCCCCCCC
Confidence            9999999999999999999997 8888887775533

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.77  E-value=6.4e-20  Score=118.30  Aligned_cols=87  Identities=31%  Similarity=0.682  Sum_probs=78.5

Q ss_pred             CCCCccCc--cchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCC
Q psy11761         68 KPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD  145 (198)
Q Consensus        68 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~  145 (198)
                      ++++|.|+  .|++.|.....|..|+++|.++++|.|+.|++.|.+             ...|..|++.|+ ++++|.|+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR-------------SDHLTTHIRTHT-GEKPFACD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC-------------HHHHHHHHHHHH-CCCCEECT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCC-------------HHHHHHHHHHcC-CCCCccCC
Confidence            36789998  599999999999999999999999999999999998             899999999888 78999999


Q ss_pred             cchhhhcChhHHHhhhhhhCCCC
Q psy11761        146 RCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       146 ~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      .|++.|.+.+.|..|+++|++++
T Consensus        67 ~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           67 ICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             TTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCCchhCCHHHHHHHHHHhcccC
Confidence            99999999999999999999875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.75  E-value=1.6e-19  Score=114.28  Aligned_cols=82  Identities=38%  Similarity=0.775  Sum_probs=74.4

Q ss_pred             CccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhh
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQF  150 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~  150 (198)
                      ||.|+.|++.|.....|..|++.|.++++|.|+.|++.|.+             ...|..|++.++ ++++|.|+.|++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~   66 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQ-------------KSDMKKHTFIHT-GEKPHKCQVCGKA   66 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESS-------------HHHHHHHHHHHH-TCCCEECTTTSCE
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCC-------------HHHHHHHHHHhc-CCCCCcCCCcchh
Confidence            57899999999999999999999999999999999999988             889999999888 7899999999999


Q ss_pred             hcChhHHHhhhhhhCC
Q psy11761        151 FGDRMNLISHHCHKHK  166 (198)
Q Consensus       151 f~~~~~L~~H~~~~~~  166 (198)
                      |.+.+.|..|+++|+|
T Consensus        67 f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           67 FSQSSNLITHSRKHTG   82 (82)
T ss_dssp             ESSHHHHHHHHHHHC-
T ss_pred             hCChHHHHHHHHhhCC
Confidence            9999999999998874

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=6.7e-19  Score=117.83  Aligned_cols=88  Identities=32%  Similarity=0.601  Sum_probs=83.1

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCee
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQ  143 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~  143 (198)
                      ..|.++++|.| .|++.|.....|..|++.|.++++|.|+.|++.|..             ...|..|++.|+ ++++|+
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~   67 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKM-------------KHHLVGHMKIHT-GIKPYE   67 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESS-------------SHHHHHHHTTTC-CCCCEE
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCC-------------HHHHHHHHHHcC-CCCCee
Confidence            46788999999 999999999999999999999999999999999998             999999999988 789999


Q ss_pred             CCcchhhhcChhHHHhhhhhhCC
Q psy11761        144 CDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       144 C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      |++|++.|.+.+.|..|++.|+.
T Consensus        68 C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           68 CNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCCcchhcCHHHHHHHHHHccc
Confidence            99999999999999999998874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.2e-18  Score=113.47  Aligned_cols=86  Identities=29%  Similarity=0.563  Sum_probs=76.7

Q ss_pred             CCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCC--CCeeC
Q psy11761         67 MKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP--KPYQC  144 (198)
Q Consensus        67 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~--~~~~C  144 (198)
                      .++++|.|+.|++.|.....|..|+++|.++++|.|+.|++.|.+             ...|..|++.++ ++  ++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~~~C   68 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKR-------------KDRMSYHVRSHD-GSVGKPYIC   68 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESC-------------HHHHHHHHHHHC-CCCCSSBCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCC-------------HHHHHHHHHHhc-CCCCCceEC
Confidence            467889999999999999999999999999999999999999988             889999999887 54  89999


Q ss_pred             CcchhhhcChhHHHhhhh-hhCC
Q psy11761        145 DRCSQFFGDRMNLISHHC-HKHK  166 (198)
Q Consensus       145 ~~C~k~f~~~~~L~~H~~-~~~~  166 (198)
                      ++|++.|.+.+.|..|++ .|.+
T Consensus        69 ~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           69 QSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             CCccchhCCHHHHHHHHHHhcCC
Confidence            999999999999999987 4543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.72  E-value=2.1e-18  Score=114.53  Aligned_cols=90  Identities=32%  Similarity=0.695  Sum_probs=84.3

Q ss_pred             CCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccC
Q psy11761         41 AGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHT  120 (198)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~  120 (198)
                      ..+|.|..|++.|.....|..|+..|+++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|.+         
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~---------   85 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ---------   85 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS---------
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC---------
Confidence            44789999999999999999999999999999999999999999999999999999999999999999998         


Q ss_pred             CCcCcccccccccccccCCCCeeC
Q psy11761        121 PTYTKSNLAQHSCMNSHFPKPYQC  144 (198)
Q Consensus       121 ~~~~~~~l~~H~~~~~~~~~~~~C  144 (198)
                          ...|..|++.|. ++++|.+
T Consensus        86 ----~~~L~~H~~~H~-~~~~~~~  104 (106)
T 2ee8_A           86 ----SRTLAVHKTLHM-QTSSPTA  104 (106)
T ss_dssp             ----HHHHHHHHHHTT-SCCCCCC
T ss_pred             ----HHHHHHHHHHhC-CCCCCcC
Confidence                999999999998 7888754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=4.7e-18  Score=110.81  Aligned_cols=88  Identities=38%  Similarity=0.646  Sum_probs=81.5

Q ss_pred             CCCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCccc
Q psy11761         40 NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH  119 (198)
Q Consensus        40 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~  119 (198)
                      ...+|.|..|++.|.....|..|++.|++.++|.|+.|++.|.....|..|+++|.++++|.|+.|++.|..        
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~--------   76 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN--------   76 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS--------
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC--------
Confidence            345788899999999999999999999999999999999999999999999999999999999999999998        


Q ss_pred             CCCcCcccccccccccccCCCC
Q psy11761        120 TPTYTKSNLAQHSCMNSHFPKP  141 (198)
Q Consensus       120 ~~~~~~~~l~~H~~~~~~~~~~  141 (198)
                           .+.|..|++.|+ ++++
T Consensus        77 -----~~~l~~H~~~h~-~~~~   92 (96)
T 2dmd_A           77 -----SSQLTVHLRSHT-GDSG   92 (96)
T ss_dssp             -----HHHHHHHHTTCC-SCCC
T ss_pred             -----HHHHHHHHHHhc-CCCC
Confidence                 999999999998 5543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=2.4e-18  Score=115.99  Aligned_cols=98  Identities=16%  Similarity=0.278  Sum_probs=80.0

Q ss_pred             cccceeeeechhhhhhhCCCCccccCcccchhhcccCCCceecCccccccCChhHHhhcccC--CCCCCCcc-Cccchhc
Q psy11761          4 QTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCP--QMKPRPYK-CDTCEKS   80 (198)
Q Consensus         4 ~~~~l~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~-C~~C~~~   80 (198)
                      ...+|.     .|+++|++++||.|                  .+|++.|.....|..|++.  |.+.+++. |+.|++.
T Consensus         3 s~~~l~-----~H~~~H~~~~~~~C------------------~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~   59 (115)
T 2dmi_A            3 SGSSGK-----LYGSIFTGASKFRC------------------KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR   59 (115)
T ss_dssp             CCCCCC-----CCCCCCCCCCSEEB------------------SSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSC
T ss_pred             cchhhh-----hheeeeCCCCCEEC------------------CccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcc
Confidence            356777     99999999887766                  4566677777888888887  66666554 9999988


Q ss_pred             c--cCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCccccccccccccc
Q psy11761         81 F--TNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH  137 (198)
Q Consensus        81 f--~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~  137 (198)
                      |  .....|..|+++|.+++||.|++|++.|..             .+.|..|++.++.
T Consensus        60 f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~hh~  105 (115)
T 2dmi_A           60 WSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFES-------------LQDLSVHMIKTKH  105 (115)
T ss_dssp             CSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSS-------------HHHHHHHHHHTTT
T ss_pred             cccccHHHHHHHhhccCCCcceECCCCCCccCC-------------HHHHHHHHHHhCC
Confidence            8  788889999999999999999999999988             8899999988773

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.69  E-value=4.2e-18  Score=101.40  Aligned_cols=58  Identities=26%  Similarity=0.541  Sum_probs=55.0

Q ss_pred             CCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761         97 IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus        97 ~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ||||.|.+||+.|..             .+.|..|+++|+ +++||.|++||+.|.+.+.|..|+++|.|++
T Consensus         2 EKpy~C~~C~k~F~~-------------~~~L~~H~~~Ht-~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRD-------------ASGLSRHRRAHL-GYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESS-------------HHHHHHHHHHHH-TCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCC-------------HHHHHHHHHHhC-CCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            799999999999998             999999999998 8999999999999999999999999998875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.67  E-value=2.6e-18  Score=108.70  Aligned_cols=81  Identities=36%  Similarity=0.757  Sum_probs=77.5

Q ss_pred             ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCC
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPT  122 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~  122 (198)
                      ||.|..|++.|.....|..|+..|.++++|.|+.|++.|.....|..|++.|.++++|.|+.|++.|.+           
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-----------   69 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQ-----------   69 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESS-----------
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCC-----------
Confidence            588999999999999999999999999999999999999999999999999999999999999999998           


Q ss_pred             cCcccccccccccc
Q psy11761        123 YTKSNLAQHSCMNS  136 (198)
Q Consensus       123 ~~~~~l~~H~~~~~  136 (198)
                        .+.|..|++.|+
T Consensus        70 --~~~l~~H~~~H~   81 (82)
T 2kmk_A           70 --SSNLITHSRKHT   81 (82)
T ss_dssp             --HHHHHHHHHHHC
T ss_pred             --hHHHHHHHHhhC
Confidence              899999998875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.66  E-value=2.3e-17  Score=105.96  Aligned_cols=82  Identities=28%  Similarity=0.642  Sum_probs=67.3

Q ss_pred             CCCccCcc--chhcccCchhHHHhhhhcCCCCcccCC--cCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeC
Q psy11761         69 PRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC  144 (198)
Q Consensus        69 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~--~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C  144 (198)
                      ..+|.|+.  |++.|.....|..|++.|.++++|.|+  .|++.|.+             ...|..|++.|+ ++++|.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C   68 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFAR-------------SDELTRHYRKHT-GHRPFQC   68 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESS-------------HHHHHHHHHHHH-CCCCEEC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCC-------------HHHHHHHHHHcC-CCCCccC
Confidence            45678887  888888888888888888888888886  58888887             788888888777 6788888


Q ss_pred             CcchhhhcChhHHHhhhhhh
Q psy11761        145 DRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       145 ~~C~k~f~~~~~L~~H~~~~  164 (198)
                      +.|++.|.+.+.|..|+++|
T Consensus        69 ~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           69 QKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             SSSSCEESSHHHHHHHGGGG
T ss_pred             CCCCcccCCHHHHHHHHHhh
Confidence            88888888888888888776

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.66  E-value=3.2e-17  Score=107.58  Aligned_cols=85  Identities=34%  Similarity=0.652  Sum_probs=75.8

Q ss_pred             CCCCccCcc--chhcccCchhHHHhhhhcCCCCcccCC--cCchhhhcccCCCcccCCCcCcccccccccccccCCCCee
Q psy11761         68 KPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQ  143 (198)
Q Consensus        68 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~--~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~  143 (198)
                      ..++|.|..  |++.|.....|..|++.|.++++|.|+  .|++.|..             ...|..|++.|+ ++++|.
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~   77 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR-------------SDELTRHYRKHT-GAKPFQ   77 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESS-------------HHHHHHHHHHHT-SCCSCB
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCC-------------HHHHHHHHHHhC-CCCCeE
Confidence            456788986  999999999999999999999999996  59999988             889999999888 789999


Q ss_pred             CCcchhhhcChhHHHhhhhhhCC
Q psy11761        144 CDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       144 C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      |++|++.|.+.+.|..|+++|++
T Consensus        78 C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           78 CGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCCcCccCCHHHHHHHHHHhCC
Confidence            99999999999999999998864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=1.2e-17  Score=107.58  Aligned_cols=85  Identities=28%  Similarity=0.624  Sum_probs=78.1

Q ss_pred             CceecC--ccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCccc
Q psy11761         42 GVHKCE--YCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH  119 (198)
Q Consensus        42 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~  119 (198)
                      ++|.|.  .|++.|.....|..|+..|.+.++|.|+.|++.|.....|..|+++|.++++|.|+.|++.|.+        
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~--------   74 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR--------   74 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS--------
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCC--------
Confidence            367787  6999999999999999999999999999999999999999999999999999999999999998        


Q ss_pred             CCCcCcccccccccccccCCC
Q psy11761        120 TPTYTKSNLAQHSCMNSHFPK  140 (198)
Q Consensus       120 ~~~~~~~~l~~H~~~~~~~~~  140 (198)
                           .+.|..|++.|+ +++
T Consensus        75 -----~~~l~~H~~~H~-~~k   89 (90)
T 1a1h_A           75 -----SDERKRHTKIHL-RQK   89 (90)
T ss_dssp             -----HHHHHHHHGGGG-C--
T ss_pred             -----HHHHHHHHHHhc-ccC
Confidence                 999999999987 543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=4.5e-17  Score=105.89  Aligned_cols=84  Identities=27%  Similarity=0.609  Sum_probs=77.6

Q ss_pred             CCCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCC--CcccCCcCchhhhcccCCCc
Q psy11761         40 NAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI--RPFKCTTCDKSFVNQINPTS  117 (198)
Q Consensus        40 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--k~~~C~~C~~~f~~~~~~~~  117 (198)
                      ...+|.|..|++.|.....|..|+..|+++++|.|+.|++.|.....|..|++.|.++  ++|.|+.|++.|.+      
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~------   77 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR------   77 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSS------
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCC------
Confidence            3457889999999999999999999999999999999999999999999999999987  89999999999998      


Q ss_pred             ccCCCcCccccccccc-ccc
Q psy11761        118 THTPTYTKSNLAQHSC-MNS  136 (198)
Q Consensus       118 ~~~~~~~~~~l~~H~~-~~~  136 (198)
                             .+.|..|++ .|.
T Consensus        78 -------~~~L~~H~~~~H~   90 (95)
T 2yt9_A           78 -------PDHLNGHIKQVHS   90 (95)
T ss_dssp             -------HHHHHHHHHHTSC
T ss_pred             -------HHHHHHHHHHhcC
Confidence                   999999986 454

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.63  E-value=3.5e-18  Score=109.88  Aligned_cols=83  Identities=24%  Similarity=0.575  Sum_probs=75.8

Q ss_pred             CCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcch
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCS  148 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~  148 (198)
                      ++||.|+.|++.|.....|..|+++|.++++|.|+.|++.|..             .+.|..|++.++  ..+|.|+.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~h~--~~~~~c~~C~   65 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR-------------SDERKRHRDIQH--ILPILEDKVE   65 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESS-------------HHHHHHHHHHHT--HHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCC-------------HHHHHHHHHHhC--CCcchHHHHH
Confidence            4789999999999999999999999999999999999999998             899999999887  4889999999


Q ss_pred             hhhcChhHHHhhhhhhCC
Q psy11761        149 QFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       149 k~f~~~~~L~~H~~~~~~  166 (198)
                      +.|.+...|..|++.+|+
T Consensus        66 ~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           66 ELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHH
Confidence            999999999999987763

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=6.2e-17  Score=107.71  Aligned_cols=88  Identities=19%  Similarity=0.369  Sum_probs=79.9

Q ss_pred             hhhhhhCCCCccccCcccchhhcccCCC--------ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchh
Q psy11761         15 TLLCIHGNDNAYKCHQCQRLIFLSANAG--------VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQN   86 (198)
Q Consensus        15 ~h~~~h~~~~~~~C~~C~~~f~~~~~~~--------~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   86 (198)
                      .++++|+++++|.|+.|++.|.....+.        +|.|.+|++.|.....|..|+. |+++++|.|+.|++.|.....
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~   84 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFS   84 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHH
Confidence            6788899999999999999998766554        7899999999999999999995 999999999999999999999


Q ss_pred             HHHhhh-hcCCCCcccCC
Q psy11761         87 LNTHQL-IHSGIRPFKCT  103 (198)
Q Consensus        87 l~~H~~-~h~~~k~~~C~  103 (198)
                      |..|++ .|.++++|.+.
T Consensus        85 L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           85 IWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHcCCCCCCCCC
Confidence            999997 99999998875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.6e-16  Score=101.29  Aligned_cols=81  Identities=21%  Similarity=0.376  Sum_probs=70.4

Q ss_pred             hHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCC---CCeeCCcchhhhcChhHHHhhhh
Q psy11761         86 NLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP---KPYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus        86 ~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~---~~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      ++..|+++|.++++|.|..|++.|..             ...|..|++.++...   ++|.|++|++.|.+...|..|++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~-------------~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQ-------------KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESS-------------HHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CcccccceecCCCCCcCCCCCCccCC-------------HHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHH
Confidence            35679999999999999999999998             899999998877432   78999999999999999999999


Q ss_pred             hhCCCCCCCcccccccCCC
Q psy11761        163 HKHKQSCLPFISRLFGFDD  181 (198)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~  181 (198)
                      +|+++++  +.|..|+..+
T Consensus        69 ~h~~~~~--~~~~~~~~~~   85 (86)
T 1x6h_A           69 NCAGPDG--VEGENSGPSS   85 (86)
T ss_dssp             HCCCCCS--CCCCCCCCCC
T ss_pred             HccCCCC--cccCCCCCCC
Confidence            9999985  5677777654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=9.4e-17  Score=105.31  Aligned_cols=80  Identities=16%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             cccCchhHHHhhhhcCCCCcccCCcCchhhh-cccCCCcccCCCcCcccccccccccccC-CCCeeCCcchhhhcChhHH
Q psy11761         80 SFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV-NQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNL  157 (198)
Q Consensus        80 ~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~-~~~~~~~~~~~~~~~~~l~~H~~~~~~~-~~~~~C~~C~k~f~~~~~L  157 (198)
                      .+.....+..|++.|.++++|.|..|++.|. .             ...|..|++.|+ + +++|.|++|++.|.+...|
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~-------------~~~L~~H~~~h~-~~~~~~~C~~C~k~F~~~~~L   70 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKT-------------LVGLKKHMEVCQ-KLQDALKCQHCRKQFKSKAGL   70 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSC-------------SHHHHHHHHHHH-HHHHHHSCSSSCCCCSCHHHH
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhh-------------HHHHHHHHHHHc-CCCCCEECCCCCCccCCHHHH
Confidence            3445566788999999999999999999999 8             899999999988 5 8899999999999999999


Q ss_pred             HhhhhhhCCCCCCCcc
Q psy11761        158 ISHHCHKHKQSCLPFI  173 (198)
Q Consensus       158 ~~H~~~~~~~~~~~~~  173 (198)
                      ..|++.|++++|+...
T Consensus        71 ~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           71 NYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             HHHHHHHSCSCSSCCC
T ss_pred             HHHHHHHcCCCCCCCC
Confidence            9999999999986543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=9.6e-17  Score=107.22  Aligned_cols=82  Identities=30%  Similarity=0.659  Sum_probs=75.9

Q ss_pred             CCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccC
Q psy11761         41 AGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHT  120 (198)
Q Consensus        41 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~  120 (198)
                      .++|.| .|++.|.....|..|+..|++.++|.|+.|++.|.....|..|+++|.++++|.|+.|++.|..         
T Consensus         8 ~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~---------   77 (110)
T 2csh_A            8 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW---------   77 (110)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC---------
T ss_pred             CCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC---------
Confidence            346778 7888999999999999999999999999999999999999999999999999999999999998         


Q ss_pred             CCcCcccccccccccc
Q psy11761        121 PTYTKSNLAQHSCMNS  136 (198)
Q Consensus       121 ~~~~~~~l~~H~~~~~  136 (198)
                          .+.|..|++.++
T Consensus        78 ----~~~l~~H~~~~~   89 (110)
T 2csh_A           78 ----RDSFHRHVTSCT   89 (110)
T ss_dssp             ----HHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcc
Confidence                899999998876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.59  E-value=2.9e-16  Score=100.70  Aligned_cols=81  Identities=36%  Similarity=0.779  Sum_probs=76.2

Q ss_pred             CceecCc--cccccCChhHHhhcccCCCCCCCccCc--cchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCc
Q psy11761         42 GVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTS  117 (198)
Q Consensus        42 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~  117 (198)
                      .+|.|..  |++.|.....|..|+..|++.++|.|+  .|++.|.....|..|++.|.++++|.|+.|++.|..      
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~------   77 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR------   77 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESS------
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCC------
Confidence            3688988  999999999999999999999999997  699999999999999999999999999999999998      


Q ss_pred             ccCCCcCccccccccccc
Q psy11761        118 THTPTYTKSNLAQHSCMN  135 (198)
Q Consensus       118 ~~~~~~~~~~l~~H~~~~  135 (198)
                             .+.|..|++.|
T Consensus        78 -------~~~l~~H~~~H   88 (89)
T 2wbs_A           78 -------SDHLALHMKRH   88 (89)
T ss_dssp             -------HHHHHHHGGGG
T ss_pred             -------HHHHHHHHHhh
Confidence                   89999999876

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=3.7e-16  Score=99.56  Aligned_cols=80  Identities=24%  Similarity=0.423  Sum_probs=73.5

Q ss_pred             HHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCC----CcccCCcCchhhhcccCCCcccCCCcCccccccccc
Q psy11761         58 SLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI----RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC  133 (198)
Q Consensus        58 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~  133 (198)
                      ++..|+++|+++++|.|+.|++.|.....|..|++.+.+.    ++|.|..|++.|..             .+.|..|++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~-------------~~~L~~H~~   68 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR-------------RNTMARHAD   68 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESC-------------HHHHHHHHH
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCC-------------HHHHHHHHH
Confidence            4678999999999999999999999999999999877765    78999999999998             999999999


Q ss_pred             ccccCCCCeeCCcchhhh
Q psy11761        134 MNSHFPKPYQCDRCSQFF  151 (198)
Q Consensus       134 ~~~~~~~~~~C~~C~k~f  151 (198)
                      .++ +++++.|+.|+..|
T Consensus        69 ~h~-~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           69 NCA-GPDGVEGENSGPSS   85 (86)
T ss_dssp             HCC-CCCSCCCCCCCCCC
T ss_pred             Hcc-CCCCcccCCCCCCC
Confidence            998 78999999999875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.58  E-value=2e-16  Score=100.49  Aligned_cols=78  Identities=31%  Similarity=0.633  Sum_probs=71.1

Q ss_pred             CccC--ccchhcccCchhHHHhhhhcCCCCcccCCc--CchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCc
Q psy11761         71 PYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR  146 (198)
Q Consensus        71 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~  146 (198)
                      ||.|  +.|++.|.....|..|+++|.++++|.|+.  |++.|..             .+.|..|++.|+ +   |.|+.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~-------------~~~l~~H~~~h~-~---~~C~~   63 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL-------------PSRLKRHEKVHA-G---YPCKK   63 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESS-------------HHHHHHHHHHHH-S---EECCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCC-------------HHHHHHHHHHhC-C---CCCCC
Confidence            5788  889999999999999999999999999988  9999998             899999999887 3   99999


Q ss_pred             ---chhhhcChhHHHhhhhhhC
Q psy11761        147 ---CSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       147 ---C~k~f~~~~~L~~H~~~~~  165 (198)
                         |++.|.+.+.|..|+++||
T Consensus        64 ~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           64 DDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCccCCHHHHHHHHHhcC
Confidence               9999999999999998875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.58  E-value=2.3e-16  Score=93.82  Aligned_cols=55  Identities=31%  Similarity=0.744  Sum_probs=39.8

Q ss_pred             CCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      ++||.|++|++.|.....|..|+++|++++||.|+.||+.|..             .+.|..|+++|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~-------------~~~L~~H~~~Ht   56 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD-------------QSEVNRHLKVHQ   56 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS-------------HHHHHHHGGGGS
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC-------------HHHHHHHhCccC
Confidence            5677777777777777777777777777777777777777776             677777777665

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.6e-15  Score=94.78  Aligned_cols=67  Identities=33%  Similarity=0.576  Sum_probs=61.5

Q ss_pred             hhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761         92 LIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus        92 ~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      ..+.++++|.|+.|++.|..             ...|..|++.|. ++++|.|++|++.|.....|..|+++|++++||.
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~   76 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSH-------------SSDLSKHRRTHT-GEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS   76 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSC-------------HHHHHHHHTTTC-CSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCC-------------HHHHHHHHHHcC-CCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            45677899999999999998             999999999988 7899999999999999999999999999999775


Q ss_pred             c
Q psy11761        172 F  172 (198)
Q Consensus       172 ~  172 (198)
                      |
T Consensus        77 C   77 (77)
T 2cot_A           77 G   77 (77)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.1e-15  Score=93.80  Aligned_cols=65  Identities=28%  Similarity=0.414  Sum_probs=60.8

Q ss_pred             hcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761         93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus        93 ~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      ++.++++|.|..|++.|..             ...|..|++.|. ++++|+|++|++.|.+...|..|+++|++++|.+
T Consensus         3 s~~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~H~-~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSS-------------KAALRIHERIHC-TDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSCEESS-------------HHHHHHHHGGGC-CSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCCeECCCCCcccCC-------------HHHHHHHHHHcC-CCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            4778999999999999998             999999999987 7899999999999999999999999999999765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=7.4e-16  Score=96.67  Aligned_cols=30  Identities=20%  Similarity=0.431  Sum_probs=12.6

Q ss_pred             CCCeeCCc--chhhhcChhHHHhhhhhhCCCC
Q psy11761        139 PKPYQCDR--CSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       139 ~~~~~C~~--C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +++|.|++  |++.|.+.+.|..|+++|++++
T Consensus        36 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   67 (79)
T 2dlk_A           36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR   67 (79)
T ss_dssp             CCCEECSCTTTCCEESSHHHHHHHHHHHHTSC
T ss_pred             CCCeECCCCCCcCccCCHHHHHHHHHHhCCCC
Confidence            34444443  4444444444444444444333

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.55  E-value=7.9e-16  Score=100.80  Aligned_cols=84  Identities=35%  Similarity=0.760  Sum_probs=77.9

Q ss_pred             CCCceecCc--cccccCChhHHhhcccCCCCCCCccCc--cchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCC
Q psy11761         40 NAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINP  115 (198)
Q Consensus        40 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~  115 (198)
                      ..++|.|..  |++.|.....|..|+..|+++++|.|+  .|++.|.....|..|+++|.++++|.|+.|++.|..    
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~----   87 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSR----   87 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSS----
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCC----
Confidence            344788886  999999999999999999999999996  699999999999999999999999999999999998    


Q ss_pred             CcccCCCcCcccccccccccc
Q psy11761        116 TSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus       116 ~~~~~~~~~~~~l~~H~~~~~  136 (198)
                               .+.|..|++.|.
T Consensus        88 ---------~~~l~~H~~~H~   99 (100)
T 2ebt_A           88 ---------SDHLALHMKRHQ   99 (100)
T ss_dssp             ---------HHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHhC
Confidence                     899999998875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.53  E-value=2.5e-15  Score=93.16  Aligned_cols=65  Identities=31%  Similarity=0.591  Sum_probs=59.9

Q ss_pred             hhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCC
Q psy11761         92 LIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCL  170 (198)
Q Consensus        92 ~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~  170 (198)
                      ..+.++++|.|..|++.|..             .+.|..|++.|. ++++|+|++|++.|.+.+.|..|+++|++++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~-------------~~~l~~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRY-------------KGNLASHKTVHT-GEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSC-------------HHHHHHHHHHHC-CCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCC-------------HHHHHHHHHHcC-CCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            34677899999999999998             999999999988 789999999999999999999999999999875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=4.2e-15  Score=92.87  Aligned_cols=69  Identities=36%  Similarity=0.744  Sum_probs=52.3

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKP  141 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~  141 (198)
                      +...+.++++|.|++|++.|.....|..|+++|.++++|.|++|++.|..             .+.|..|++.|+ +++|
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~H~-~~~p   74 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ-------------RSHLIGHHRVHT-GSGP   74 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS-------------HHHHHHHGGGSC-CCCC
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC-------------HHHHHHHHHHhC-CCCC
Confidence            33455667778888888888877778888888877778888888888777             777778887777 6777


Q ss_pred             eeC
Q psy11761        142 YQC  144 (198)
Q Consensus       142 ~~C  144 (198)
                      |+|
T Consensus        75 ~~C   77 (77)
T 2cot_A           75 SSG   77 (77)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            776

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=2.5e-15  Score=92.61  Aligned_cols=72  Identities=18%  Similarity=0.260  Sum_probs=51.6

Q ss_pred             cccceeeeechhhhhhhCCCCccccCcccchhhcccCCCceecCccccccCChhHHhhcccCCCCCCCccCccchhcccC
Q psy11761          4 QTPNLVLFSQQTLLCIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTN   83 (198)
Q Consensus         4 ~~~~l~~~~~~~h~~~h~~~~~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   83 (198)
                      ++.+|.     .|+++|.+++||.|+.|++.|.....+..                         +++|.|+.|++.|..
T Consensus         2 ~~~~l~-----~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------------------------~~~~~C~~C~~~f~~   51 (73)
T 2ctu_A            2 SSGSSG-----KRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------------------------RKTPMCEKCRKDSCQ   51 (73)
T ss_dssp             CCCSCC-----CCCCCCCCCSEEECSSSCCEEECCCCCCC-------------------------SSSCCCHHHHHTCSC
T ss_pred             cchhHH-----HHHHHhCCCCCeeCCcccchhCCHHHhCc-------------------------CCCCCCCCCChhhcC
Confidence            456777     99999999999999999999887776543                         345666666666666


Q ss_pred             chhHHHhhhhcCCCCcccCCcC
Q psy11761         84 SQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        84 ~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      ...|..|+++|.++++|.|+.|
T Consensus        52 ~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           52 EAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHHHHhhcCCCCCCCCCC
Confidence            6666666666666666666554

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.51  E-value=3.7e-16  Score=107.36  Aligned_cols=83  Identities=20%  Similarity=0.335  Sum_probs=70.1

Q ss_pred             CCCccCccchhccc------CchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCe
Q psy11761         69 PRPYKCDTCEKSFT------NSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (198)
Q Consensus        69 ~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~  142 (198)
                      .+.+.|++|...|.      ....|..|+ .|.+++||.|+.|++.|..             .+.|..|++.|   +++|
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~-------------~~~l~~H~~~H---~~~~  101 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSS-------------SVSLKQHIRYT---EHTK  101 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESS-------------HHHHHHHHHHT---CCCC
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCC-------------HhHHHHHHHHC---CCCC
Confidence            45667777776665      445566666 6888999999999999998             89999999987   6899


Q ss_pred             eCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        143 QCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       143 ~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      .|+.|++.|.+.+.|..|+++|++.-
T Consensus       102 ~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A          102 VCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            99999999999999999999998763

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=2.2e-15  Score=94.21  Aligned_cols=69  Identities=20%  Similarity=0.469  Sum_probs=60.8

Q ss_pred             HHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCccccccccc-ccccCCCCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761         87 LNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC-MNSHFPKPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus        87 l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~-~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      +..|+++|.+++||.|+.|++.|..             ...|..|++ .|...+++|+|++|++.|.+.+.|..|++.+|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~-------------~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQ-------------SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESC-------------HHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CCccccccCCCCCeECCCcCchhCC-------------HHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            4578999999999999999999998             999999997 45522489999999999999999999999887


Q ss_pred             CCC
Q psy11761        166 KQS  168 (198)
Q Consensus       166 ~~~  168 (198)
                      +..
T Consensus        70 ~~~   72 (77)
T 2ct1_A           70 SYS   72 (77)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=3.2e-15  Score=92.24  Aligned_cols=65  Identities=34%  Similarity=0.650  Sum_probs=60.1

Q ss_pred             hhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761         90 HQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus        90 H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +.++|.++++|.|+.|++.|..             ...|..|++.|. ++++|+|++|++.|.+...|..|+++|+++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~-------------~~~L~~H~~~h~-~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSR-------------SSILVQHQRVHT-GEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESS-------------HHHHHHHHHGGG-CSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCC-------------HHHHHHHHHhcC-CCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            3567899999999999999998             999999999988 7999999999999999999999999998765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=5.2e-15  Score=92.72  Aligned_cols=69  Identities=25%  Similarity=0.577  Sum_probs=63.5

Q ss_pred             CceecCc--cccccCChhHHhhccc-CCCCCCCccCcc--chhcccCchhHHHhhhhcCCCCcccCCcCchhhh
Q psy11761         42 GVHKCEY--CHKVFDQQSSLLSHNC-PQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV  110 (198)
Q Consensus        42 ~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~  110 (198)
                      .+|.|..  |++.|.....|..|++ .|.++++|.|+.  |++.|.....|..|+++|.++++|.|+.|++.|.
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            3566665  9999999999999998 799999999999  9999999999999999999999999999999883

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=5.1e-15  Score=96.62  Aligned_cols=74  Identities=12%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             cccCchhHHHhhhhcCCCCcccCCcCchhh-hcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHH
Q psy11761         80 SFTNSQNLNTHQLIHSGIRPFKCTTCDKSF-VNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLI  158 (198)
Q Consensus        80 ~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f-~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~  158 (198)
                      .+.....+..|++.+.++++|.|+.|++.| ..             .+.|..|++.|  ++++|.|++|++.|...+.|.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~-------------~~~L~~H~~~h--~~k~~~C~~Cgk~F~~~~~L~   79 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKT-------------IEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMK   79 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESS-------------HHHHHHHHHHH--CCCCCCCSSSCCCCSSHHHHH
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccC-------------HHHHHHHHHHH--CCCCeECCCCCCeeCCHHHHH
Confidence            445566788899999999999999999999 88             89999999988  689999999999999999999


Q ss_pred             hh-hhhhCCCC
Q psy11761        159 SH-HCHKHKQS  168 (198)
Q Consensus       159 ~H-~~~~~~~~  168 (198)
                      .| +.+|.++.
T Consensus        80 ~H~~~~H~~~p   90 (96)
T 2ctd_A           80 YHVMANHNSLP   90 (96)
T ss_dssp             HHHHHHTCCCS
T ss_pred             HHhHHhcCCCC
Confidence            99 77776543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.49  E-value=2.6e-16  Score=100.98  Aligned_cols=81  Identities=19%  Similarity=0.403  Sum_probs=75.6

Q ss_pred             CceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCC
Q psy11761         42 GVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTP  121 (198)
Q Consensus        42 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~  121 (198)
                      ++|.|..|++.|.....|..|+.+|+++++|.|+.|++.|.....|..|++.|.+ .+|.|+.|++.|..          
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~----------   70 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSK----------   70 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHH----------
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHH----------
Confidence            3789999999999999999999999999999999999999999999999999985 78999999999998          


Q ss_pred             CcCcccccccccccc
Q psy11761        122 TYTKSNLAQHSCMNS  136 (198)
Q Consensus       122 ~~~~~~l~~H~~~~~  136 (198)
                         ...|..|++..+
T Consensus        71 ---~~~L~~H~~~~h   82 (88)
T 1llm_C           71 ---NYHLENEVARLK   82 (88)
T ss_dssp             ---HHHHHHHHHHHH
T ss_pred             ---HhhhHHHHHHHH
Confidence               889999987765

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=3.6e-15  Score=91.89  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             hhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCccccccccccc
Q psy11761         56 QSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (198)
Q Consensus        56 ~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (198)
                      ...|..|++.|.++++|.|+.|++.|.....|..       +++|.|+.|++.|..             .+.|..|++.|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~-------------~~~l~~H~~~H   62 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQ-------------EAALNKDEGNE   62 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSC-------------CCSSCCCSSCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcC-------------HHHHHHHHHhh
Confidence            4568899999999999999999999999887766       789999999999998             89999999998


Q ss_pred             ccCCCCeeCCcc
Q psy11761        136 SHFPKPYQCDRC  147 (198)
Q Consensus       136 ~~~~~~~~C~~C  147 (198)
                      + ++++|+|++|
T Consensus        63 ~-~~~~~~C~~C   73 (73)
T 2ctu_A           63 S-GKKTSGPSSG   73 (73)
T ss_dssp             C-CCCCSSCCCC
T ss_pred             c-CCCCCCCCCC
Confidence            8 7999999987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.47  E-value=2.3e-15  Score=95.52  Aligned_cols=78  Identities=26%  Similarity=0.577  Sum_probs=73.1

Q ss_pred             ceec--CccccccCChhHHhhcccCCCCCCCccCcc--chhcccCchhHHHhhhhcCCCCcccCCc---CchhhhcccCC
Q psy11761         43 VHKC--EYCHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT---CDKSFVNQINP  115 (198)
Q Consensus        43 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~---C~~~f~~~~~~  115 (198)
                      ||.|  ..|++.|.....|..|+++|+++++|.|+.  |++.|.....|..|+++|.+   |.|..   |++.|..    
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~----   73 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKT----   73 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESS----
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCC----
Confidence            5789  899999999999999999999999999988  99999999999999999998   99999   9999998    


Q ss_pred             CcccCCCcCcccccccccccc
Q psy11761        116 TSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus       116 ~~~~~~~~~~~~l~~H~~~~~  136 (198)
                               .+.|..|++.++
T Consensus        74 ---------~~~l~~H~~~hh   85 (85)
T 2j7j_A           74 ---------WTLYLKHVAECH   85 (85)
T ss_dssp             ---------HHHHHHHHHHCC
T ss_pred             ---------HHHHHHHHHhcC
Confidence                     899999988764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=1.1e-14  Score=95.88  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             hcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccc-cc--cCCCCeeCCcchhhhcChhHHHhh-hhhhCCCC
Q psy11761         93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCM-NS--HFPKPYQCDRCSQFFGDRMNLISH-HCHKHKQS  168 (198)
Q Consensus        93 ~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~-~~--~~~~~~~C~~C~k~f~~~~~L~~H-~~~~~~~~  168 (198)
                      ...|++||.|..|++.|..             .+.|..|++. |.  .++++|.|++||+.|.+.+.|..| +++|.+++
T Consensus        12 ~~~gekpy~C~~Cgk~F~~-------------~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgek   78 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPD-------------LNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE   78 (102)
T ss_dssp             CCCCCSSEECSSCSCEESC-------------HHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCC
T ss_pred             cCCCCcCcCCCCCCCccCC-------------HHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCC
Confidence            3568999999999999998             9999999974 63  258999999999999999999999 89999999


Q ss_pred             CCCccccccc
Q psy11761        169 CLPFISRLFG  178 (198)
Q Consensus       169 ~~~~~~~~~~  178 (198)
                      |  |.|.++.
T Consensus        79 p--y~C~~~~   86 (102)
T 2ghf_A           79 N--FKLTMVK   86 (102)
T ss_dssp             C--EEEEECC
T ss_pred             C--eeCCccc
Confidence            5  5555533

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.9e-14  Score=94.70  Aligned_cols=68  Identities=13%  Similarity=0.199  Sum_probs=43.8

Q ss_pred             CCCCCCccCccchhcccCchhHHHhhh-hc---CCCCcccCCcCchhhhcccCCCcccCCCcCccccccc-ccccccCCC
Q psy11761         66 QMKPRPYKCDTCEKSFTNSQNLNTHQL-IH---SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH-SCMNSHFPK  140 (198)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h---~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H-~~~~~~~~~  140 (198)
                      ..+++||.|+.|++.|.....|..|++ .|   .+++||.|..||+.|..             .+.|..| ++.|+ +++
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~-------------~~~L~~H~~r~Ht-gek   78 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR-------------YDALSEHNLKYHP-GEE   78 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESS-------------THHHHTHHHHTST-TCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCC-------------HHHHHHHHHHhcC-CCC
Confidence            345666666666666666666666665 36   44666666667666666             6666666 55565 566


Q ss_pred             CeeCCcc
Q psy11761        141 PYQCDRC  147 (198)
Q Consensus       141 ~~~C~~C  147 (198)
                      ||.|.++
T Consensus        79 py~C~~~   85 (102)
T 2ghf_A           79 NFKLTMV   85 (102)
T ss_dssp             CEEEEEC
T ss_pred             CeeCCcc
Confidence            6666653

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=9.8e-15  Score=88.33  Aligned_cols=62  Identities=24%  Similarity=0.517  Sum_probs=56.7

Q ss_pred             hhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccc-cccCCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761         92 LIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCM-NSHFPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus        92 ~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~-~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ++|.++++|.|+.|++.|..             .+.|..|++. |..++++|.|+.|++.|.+.+.|..|++.+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~-------------~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTH-------------ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESS-------------HHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCC-------------HHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            56889999999999999998             9999999998 52478999999999999999999999999886

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.44  E-value=1.5e-14  Score=84.82  Aligned_cols=57  Identities=28%  Similarity=0.477  Sum_probs=50.0

Q ss_pred             CCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761         96 GIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus        96 ~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      |+++|.|+.|++.|.+             .+.|..|++.|+ ++++|.|++|++.|.+.+.|..|++.||+
T Consensus         1 g~~~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRS-------------NYYLNIHLRTHT-GEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSC-------------HHHHHHHHHHHH-CCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCC-------------hHHHHHHHHHcC-CCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            4689999999999998             999999999988 79999999999999999999999999874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.43  E-value=2.9e-14  Score=90.69  Aligned_cols=61  Identities=20%  Similarity=0.352  Sum_probs=54.8

Q ss_pred             hhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761         91 QLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus        91 ~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      +..+.+.++|.|++|++.|.+             .+.|.+|++.|+ +++||.|++|++.|.+.+.|..|++..|
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~-------------~~~L~~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFAS-------------KGAQERHLRLLH-AAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESS-------------HHHHHHHHHTTS-CSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCc-------------HHHHhhhhhhcc-CCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            345667889999999999999             999999999998 8999999999999999999999986544

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=5.7e-15  Score=96.71  Aligned_cols=80  Identities=19%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             ccCChhHHhhcccCCCCCCCccCccchhccc-CchhHHHhhhhcCC-CCcccCCcCchhhhcccCCCcccCCCcCccccc
Q psy11761         52 VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFT-NSQNLNTHQLIHSG-IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA  129 (198)
Q Consensus        52 ~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~-~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~  129 (198)
                      .+.....+..|+++|.++++|.|+.|++.|. ....|..|+++|.+ +++|.|.+|++.|..             ...|.
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~-------------~~~L~   71 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKS-------------KAGLN   71 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSC-------------HHHHH
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCC-------------HHHHH
Confidence            3455567788999999999999999999999 99999999999998 999999999999998             99999


Q ss_pred             ccccccccCCCCeeCC
Q psy11761        130 QHSCMNSHFPKPYQCD  145 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~  145 (198)
                      .|++.|+ ++++....
T Consensus        72 ~H~~~h~-~~kp~~~~   86 (98)
T 2gqj_A           72 YHTMAEH-SAKPSDAE   86 (98)
T ss_dssp             HHHHHHS-CSCSSCCC
T ss_pred             HHHHHHc-CCCCCCCC
Confidence            9999988 67775443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.42  E-value=3.1e-14  Score=88.83  Aligned_cols=71  Identities=30%  Similarity=0.542  Sum_probs=63.2

Q ss_pred             HHhhcccCCCCCCCccCccchhcccCchhHHHhhh-hcCCC-CcccCCcCchhhhcccCCCcccCCCcCccccccccccc
Q psy11761         58 SLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSGI-RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (198)
Q Consensus        58 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~-k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (198)
                      +|.+|+++|+++++|.|++|++.|.....|..|++ .|.++ ++|.|+.|++.|..             .+.|..|++.+
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~~   68 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIAR-------------KSDLGVHLRKQ   68 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESS-------------HHHHHHHHHHT
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCC-------------HHHHHHHHHHh
Confidence            35679999999999999999999999999999997 67764 89999999999998             99999999988


Q ss_pred             ccCCCC
Q psy11761        136 SHFPKP  141 (198)
Q Consensus       136 ~~~~~~  141 (198)
                      +..+.|
T Consensus        69 H~~~~p   74 (77)
T 2ct1_A           69 HSYSGP   74 (77)
T ss_dssp             SCCSCC
T ss_pred             CCCCCC
Confidence            755554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.40  E-value=7.5e-14  Score=86.40  Aligned_cols=64  Identities=38%  Similarity=0.834  Sum_probs=43.6

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCe
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~  142 (198)
                      .+.++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|..             .+.|..|++.|+ +++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~H~-~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR-------------PANLKTHTRIHS-GEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC-------------HHHHHHHHHHHC-CSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC-------------HHHHHHHHHhcC-CCCCC
Confidence            34556677777777777777777777777777777777777777766             666777776666 55554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.39  E-value=7.9e-14  Score=81.72  Aligned_cols=56  Identities=25%  Similarity=0.466  Sum_probs=52.7

Q ss_pred             cccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761         99 PFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus        99 ~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ||.|+.|++.|.+             .+.|..|++.|+ ++++|.|+.|++.|.+.+.|..|++.|++++
T Consensus         1 p~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKK-------------PSMLKKHIRTHT-DVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSS-------------HHHHHHHHHHTS-SCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCC-------------HHHHHHHHHhcC-CCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            6899999999998             999999999988 7899999999999999999999999998875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=5.9e-14  Score=87.74  Aligned_cols=64  Identities=19%  Similarity=0.359  Sum_probs=56.0

Q ss_pred             hcCCCCcccCCcCchhhhcccCCCcccCCCcCccccccccccccc--CCCCeeCCcchhhhcChhHHHhhhhhhC-CCCC
Q psy11761         93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH--FPKPYQCDRCSQFFGDRMNLISHHCHKH-KQSC  169 (198)
Q Consensus        93 ~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~--~~~~~~C~~C~k~f~~~~~L~~H~~~~~-~~~~  169 (198)
                      +|+++++|.|..|++.|..             ...|..|++.|..  ++++|.|++|++.|...+.|..|++.+| ++++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~-------------~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQ-------------KASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESS-------------HHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCC-------------HHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            3788999999999999998             9999999999873  3799999999999999999999996555 4444

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-13  Score=86.97  Aligned_cols=59  Identities=19%  Similarity=0.352  Sum_probs=43.1

Q ss_pred             ccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccc
Q psy11761         63 NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCM  134 (198)
Q Consensus        63 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~  134 (198)
                      +..+...++|.|++|++.|.....|..|+++|++++||.|+.|++.|.+             .+.|.+|++.
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~-------------~~~L~~H~~~   78 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS-------------SPGLTRHINK   78 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS-------------HHHHHHHHHT
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC-------------HHHHHHhCcc
Confidence            3445556677777777777777777777777777777777777777777             7777777644

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=1.4e-13  Score=84.70  Aligned_cols=62  Identities=34%  Similarity=0.719  Sum_probs=55.6

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      +.++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|++.|..             ...|..|++.|+
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~H~   66 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ-------------NSGLINHQRIHT   66 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS-------------HHHHHHHHHHHH
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC-------------HHHHHHHHHhcC
Confidence            45678889999999999999999999999999999999999999999988             888999998887

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=1.6e-13  Score=83.93  Aligned_cols=63  Identities=30%  Similarity=0.452  Sum_probs=40.8

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCC
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKP  141 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~  141 (198)
                      .+.++++|.|+.|++.|.....|..|+++|.++++|.|++|++.|..             ...|..|++.++ ++++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~-------------~~~L~~H~~~h~-~~~p   65 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ-------------PSNLSKHMKKFH-GDMS   65 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS-------------HHHHHHHHHHHH-SSSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC-------------HHHHHHHHHHHh-CCCC
Confidence            34556666666666666666666666666666666666666666666             666666666665 4443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=9.9e-14  Score=90.45  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=62.6

Q ss_pred             cccCChhHHhhcccCCCCCCCccCccchhcc-cCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCccccc
Q psy11761         51 KVFDQQSSLLSHNCPQMKPRPYKCDTCEKSF-TNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA  129 (198)
Q Consensus        51 ~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~  129 (198)
                      ..+.....|..|+..+.+.++|.|+.|++.| .....|..|+++| ++++|.|..|++.|..             .+.|.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~-------------~~~L~   79 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRS-------------LAGMK   79 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSS-------------HHHHH
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCC-------------HHHHH
Confidence            3556667788888888888999999999999 8999999999999 9999999999999988             88999


Q ss_pred             cc-ccccc
Q psy11761        130 QH-SCMNS  136 (198)
Q Consensus       130 ~H-~~~~~  136 (198)
                      .| ++.|+
T Consensus        80 ~H~~~~H~   87 (96)
T 2ctd_A           80 YHVMANHN   87 (96)
T ss_dssp             HHHHHHTC
T ss_pred             HHhHHhcC
Confidence            99 77775

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=5.6e-13  Score=78.88  Aligned_cols=56  Identities=30%  Similarity=0.618  Sum_probs=50.4

Q ss_pred             CcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhh-hhhCCC
Q psy11761         98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH-CHKHKQ  167 (198)
Q Consensus        98 k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~-~~~~~~  167 (198)
                      +||.|+.|++.|..             .+.|..|++.|+ ++++|.|+.|++.|.+.+.|..|+ ..|.++
T Consensus         1 k~~~C~~C~~~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFAR-------------QEHLKRHYRSHT-NEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSC-------------HHHHHHHHHTTT-SSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCC-------------HHHHHHHHHHhC-CCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            57999999999998             999999999988 789999999999999999999997 455543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.28  E-value=1.3e-12  Score=76.41  Aligned_cols=56  Identities=29%  Similarity=0.457  Sum_probs=53.1

Q ss_pred             ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      ||.|..|++.|.....|..|+.+|+++++|.|+.|++.|.....|..|+++|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            58899999999999999999999999999999999999999999999999998875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=6.9e-13  Score=82.79  Aligned_cols=67  Identities=21%  Similarity=0.307  Sum_probs=54.3

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCC---CCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCC
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG---IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKP  141 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~  141 (198)
                      +|+++++|.|++|++.|.....|..|+++|.+   +++|.|..|++.|..             .+.|..|++.++.++++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEK-------------PDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESS-------------HHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCC-------------HHHHHHHHHHhCCCCCC
Confidence            46788889999999999988889999888885   788999999999888             88888888665546665


Q ss_pred             eeC
Q psy11761        142 YQC  144 (198)
Q Consensus       142 ~~C  144 (198)
                      ...
T Consensus        68 ~~~   70 (78)
T 2d9h_A           68 APQ   70 (78)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.27  E-value=4.8e-13  Score=78.27  Aligned_cols=55  Identities=29%  Similarity=0.570  Sum_probs=38.7

Q ss_pred             CCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      +++|.|+.|++.|.....|..|+++|.+++||.|+.|++.|..             .+.|..|++.++
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ-------------KTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS-------------HHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC-------------HHHHHHHHHHhc
Confidence            4677777777777777777777777777777777777777776             677777776654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=1.1e-12  Score=80.74  Aligned_cols=60  Identities=27%  Similarity=0.639  Sum_probs=54.0

Q ss_pred             hhcCCCCcccCC--cCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761         92 LIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus        92 ~~h~~~k~~~C~--~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      ..+.++++|.|+  .|++.|..             ...|..|++.|. ++++|.|++|++.|.+.+.|..|+++|+
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~-------------~~~l~~H~~~h~-~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSR-------------SDELTRHIRIHT-GQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESS-------------HHHHHHHHHHHH-CCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccCCCCCccCCcCCCCCCccCC-------------HHHHHHHHHhhC-CCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            357788999997  59999998             899999999988 7899999999999999999999998773

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=5e-13  Score=80.66  Aligned_cols=60  Identities=23%  Similarity=0.581  Sum_probs=47.1

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhh-c-CCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLI-H-SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      .+|.++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|.+             .+.|..|++.++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~-------------~~~L~~H~~~~H   64 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTR-------------KDNMTAHVKIIH   64 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESC-------------HHHHHHHHHHHT
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCC-------------HHHHHHHHHHHc
Confidence            456677888888888888888888888877 6 47788888888888877             777888877665

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=5.2e-12  Score=81.64  Aligned_cols=61  Identities=20%  Similarity=0.292  Sum_probs=54.4

Q ss_pred             CcccCCcCchhhhcccCCCcccCCCcCcccccccccc-cccCCCC--------eeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761         98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCM-NSHFPKP--------YQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus        98 k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~-~~~~~~~--------~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ..+.|..|++.|..             ...|..|++. |. ++++        |.|+.|++.|.+.+.|..|+++|++++
T Consensus        24 ~~~~C~~C~k~f~~-------------~~~L~~H~~~~H~-~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   89 (95)
T 2ej4_A           24 LSRPKKSCDRTFST-------------MHELVTHVTMEHV-GGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK   89 (95)
T ss_dssp             SSSSCCCCCCCCSS-------------HHHHHHHHHHTTT-CCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCC
T ss_pred             CCCcccccccccCC-------------HHHHHHHHHHhcc-CCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCC
Confidence            34789999999998             9999999998 55 6676        999999999999999999999999999


Q ss_pred             CCCc
Q psy11761        169 CLPF  172 (198)
Q Consensus       169 ~~~~  172 (198)
                      ||.|
T Consensus        90 ~~~C   93 (95)
T 2ej4_A           90 SGPS   93 (95)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            7654

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.19  E-value=1.8e-11  Score=68.23  Aligned_cols=45  Identities=27%  Similarity=0.557  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.8e-11  Score=68.23  Aligned_cols=45  Identities=33%  Similarity=0.639  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.8e-11  Score=68.24  Aligned_cols=45  Identities=29%  Similarity=0.522  Sum_probs=43.2

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.17  E-value=1.9e-11  Score=68.19  Aligned_cols=45  Identities=29%  Similarity=0.625  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.17  E-value=3e-13  Score=92.68  Aligned_cols=103  Identities=16%  Similarity=0.265  Sum_probs=81.1

Q ss_pred             hhhCCCCccccCcccch--hhcc-----cCC----CceecCccccccC------ChhHHhhcccCCCCCCCccCccchhc
Q psy11761         18 CIHGNDNAYKCHQCQRL--IFLS-----ANA----GVHKCEYCHKVFD------QQSSLLSHNCPQMKPRPYKCDTCEKS   80 (198)
Q Consensus        18 ~~h~~~~~~~C~~C~~~--f~~~-----~~~----~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~C~~C~~~   80 (198)
                      .++.|.++|.|...+..  |...     ..+    ..+.|..|.+.|.      ....|..|+ .|++++||.|+.|++.
T Consensus         5 ~~~~~~k~~~~~~k~~~~~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~   83 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMP   83 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEEECCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCE
T ss_pred             hhcccccccccccCCeeeeecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcc
Confidence            45778888987665432  2111     111    1456777776665      556667776 6888999999999999


Q ss_pred             ccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         81 FTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        81 f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      |.....|..|+++|  ++||.|+.|++.|..             .+.|..|++.++
T Consensus        84 f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~-------------~~~l~~H~~~h~  124 (129)
T 2wbt_A           84 FSSSVSLKQHIRYT--EHTKVCPVCKKEFTS-------------TDSALDHVCKKH  124 (129)
T ss_dssp             ESSHHHHHHHHHHT--CCCCBCTTTCCBCSS-------------HHHHHHHHHHTT
T ss_pred             cCCHhHHHHHHHHC--CCCCCCCCCCcccCC-------------HHHHHHHHHHHC
Confidence            99999999999999  889999999999998             999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.8e-11  Score=68.30  Aligned_cols=45  Identities=36%  Similarity=0.678  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.17  E-value=1.7e-11  Score=68.31  Aligned_cols=45  Identities=29%  Similarity=0.575  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.17  E-value=2.5e-11  Score=67.68  Aligned_cols=45  Identities=29%  Similarity=0.600  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.9e-11  Score=68.09  Aligned_cols=45  Identities=36%  Similarity=0.713  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.3e-11  Score=67.82  Aligned_cols=45  Identities=31%  Similarity=0.507  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.3e-11  Score=67.78  Aligned_cols=45  Identities=36%  Similarity=0.547  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-11  Score=80.05  Aligned_cols=61  Identities=20%  Similarity=0.317  Sum_probs=57.2

Q ss_pred             ceecCccccccCChhHHhhcccC-CCCCCC--------ccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCP-QMKPRP--------YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .+.|..|++.|.....|..|++. |.+.++        |.|+.|++.|.....|..|+++|++++||.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            56799999999999999999997 888777        99999999999999999999999999999996

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.3e-11  Score=67.80  Aligned_cols=45  Identities=31%  Similarity=0.641  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.3e-11  Score=67.75  Aligned_cols=45  Identities=33%  Similarity=0.674  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.9e-11  Score=68.17  Aligned_cols=45  Identities=38%  Similarity=0.596  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.16  E-value=2e-11  Score=68.10  Aligned_cols=45  Identities=31%  Similarity=0.599  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.9e-11  Score=68.19  Aligned_cols=45  Identities=29%  Similarity=0.558  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.1e-11  Score=67.30  Aligned_cols=45  Identities=29%  Similarity=0.594  Sum_probs=42.8

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=67.95  Aligned_cols=45  Identities=29%  Similarity=0.604  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.6e-11  Score=67.58  Aligned_cols=45  Identities=24%  Similarity=0.345  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.1e-11  Score=68.01  Aligned_cols=45  Identities=29%  Similarity=0.524  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.3e-11  Score=67.88  Aligned_cols=45  Identities=29%  Similarity=0.550  Sum_probs=42.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=67.97  Aligned_cols=45  Identities=36%  Similarity=0.674  Sum_probs=42.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.3e-11  Score=67.22  Aligned_cols=45  Identities=29%  Similarity=0.567  Sum_probs=42.8

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.1e-11  Score=67.29  Aligned_cols=45  Identities=29%  Similarity=0.527  Sum_probs=42.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.7e-11  Score=67.51  Aligned_cols=45  Identities=36%  Similarity=0.580  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.2e-11  Score=67.86  Aligned_cols=45  Identities=33%  Similarity=0.638  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.4e-11  Score=67.76  Aligned_cols=45  Identities=33%  Similarity=0.541  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999986

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.3e-11  Score=67.80  Aligned_cols=45  Identities=36%  Similarity=0.665  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.7e-11  Score=67.56  Aligned_cols=45  Identities=31%  Similarity=0.677  Sum_probs=42.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.4e-11  Score=67.76  Aligned_cols=45  Identities=36%  Similarity=0.680  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.1e-11  Score=68.02  Aligned_cols=45  Identities=33%  Similarity=0.630  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.4e-11  Score=67.74  Aligned_cols=45  Identities=24%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.8e-11  Score=68.30  Aligned_cols=45  Identities=38%  Similarity=0.647  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.14  E-value=3e-11  Score=67.31  Aligned_cols=45  Identities=33%  Similarity=0.567  Sum_probs=42.8

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            488999999999999999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.4e-11  Score=67.09  Aligned_cols=44  Identities=25%  Similarity=0.486  Sum_probs=41.9

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      |+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.7e-11  Score=66.96  Aligned_cols=45  Identities=20%  Similarity=0.277  Sum_probs=39.1

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2eml_A            2 SSGSSGT-GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS--GPSSG   46 (46)
T ss_dssp             CCCCCCS-SCCSEECSSSCCEESSHHHHHHHHGGGSSCCCS--CSSCC
T ss_pred             CccCCcC-CCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCC--CCCCC
Confidence            5788887 799999999999999999999999999999864  45544

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=2.2e-11  Score=71.82  Aligned_cols=55  Identities=35%  Similarity=0.689  Sum_probs=50.6

Q ss_pred             ceecCccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhh-hhcCCC
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQ-LIHSGI   97 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~   97 (198)
                      +|.|..|++.|.....|..|+++|+++++|.|+.|++.|.....|..|+ +.|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            6889999999999999999999999999999999999999999999996 677764

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=68.15  Aligned_cols=45  Identities=33%  Similarity=0.640  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=68.12  Aligned_cols=45  Identities=31%  Similarity=0.636  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=9.9e-12  Score=76.39  Aligned_cols=61  Identities=34%  Similarity=0.769  Sum_probs=53.5

Q ss_pred             ccCCCCCCCccCc--cchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         63 NCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        63 ~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      ..++.++++|.|+  .|++.|.....|..|+++|.++++|.|+.|++.|..             .+.|..|++.|+
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~-------------~~~l~~H~~~Ht   73 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-------------SDHLTTHIRTHT   73 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC-------------HHHHHHHHTTCC
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCC-------------HHHHHHHHHhcC
Confidence            3456788999997  599999999999999999999999999999999998             889999988763

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=6.8e-12  Score=75.73  Aligned_cols=60  Identities=27%  Similarity=0.388  Sum_probs=53.1

Q ss_pred             cCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCC-cchhhhcChhHHHhhhhhhCCCCC
Q psy11761         94 HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD-RCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus        94 h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~-~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      ..+++||.|..|++.|.              .+.|..|++. . ++++|.|+ .|++.|..++.|..|+++|....|
T Consensus         5 ~C~~~~~~C~~C~k~f~--------------~~~L~~H~~~-~-~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV--------------FDTIQSHQYQ-C-PRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE--------------HHHHHHHHHH-C-SSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC--------------HHHHHHHHHH-c-CCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            45788999999999997              5778999988 5 79999999 999999999999999999876664

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.8e-11  Score=67.49  Aligned_cols=45  Identities=31%  Similarity=0.662  Sum_probs=42.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|++|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.13  E-value=3.8e-11  Score=66.85  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=39.1

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2el4_A            2 SSGSSGT-GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS--GPSSG   46 (46)
T ss_dssp             CCCCCSC-CCCSEECSSSSCEESSHHHHHHHGGGSSSCCCS--CCTTC
T ss_pred             ccccCCC-CCCceECCCCCchhCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            5788887 799999999999999999999999999999964  45444

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2e-11  Score=68.08  Aligned_cols=45  Identities=24%  Similarity=0.381  Sum_probs=43.1

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.13  E-value=3.7e-11  Score=66.96  Aligned_cols=45  Identities=33%  Similarity=0.560  Sum_probs=42.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.12  E-value=4.2e-11  Score=66.75  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2emk_A            2 SSGSSGT-GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCCS-SSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCS--SCCCC
T ss_pred             CCCCccC-CCCceECCCCCchhCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            5788887 799999999999999999999999999999865  45443

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3.8e-11  Score=66.91  Aligned_cols=45  Identities=29%  Similarity=0.541  Sum_probs=42.8

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.7e-11  Score=66.52  Aligned_cols=42  Identities=31%  Similarity=0.397  Sum_probs=37.7

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytj_A            2 SSGSSGT-GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP   43 (46)
T ss_dssp             CSSCTTS-SCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSC
T ss_pred             CcccCCC-CCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            5788887 79999999999999999999999999999986554

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.8e-11  Score=67.43  Aligned_cols=45  Identities=29%  Similarity=0.583  Sum_probs=43.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.5e-11  Score=66.60  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|+|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2emy_A            2 SSGSSGT-GENPYECHECGKAFSRKYQLISHQRTHAGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCCC-SSCCEECSSSCCEESSHHHHHHHHHHHTTSCCS--CSSCC
T ss_pred             CCCCCCC-CCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCC--CCCCC
Confidence            5778887 799999999999999999999999999999865  45443

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.9e-11  Score=66.89  Aligned_cols=45  Identities=22%  Similarity=0.392  Sum_probs=39.1

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2eoo_A            2 SSGSSGS-GERPYGCNECGKNFGRHSHLIEHLKRHFREKSS--GPSSG   46 (46)
T ss_dssp             CCCCCCS-CCCCEECSSSCCEESSHHHHHHHHHHHHSTTSS--CCSCC
T ss_pred             CCCCCCC-CCCCEEccccCcccCCHHHHHHHHHHHcCCCCC--CCCCC
Confidence            5788887 799999999999999999999999999999864  45544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.8e-11  Score=66.90  Aligned_cols=45  Identities=38%  Similarity=0.680  Sum_probs=42.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588999999999999999999999999999999999999999875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.3e-11  Score=67.19  Aligned_cols=45  Identities=33%  Similarity=0.670  Sum_probs=42.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5e-11  Score=66.40  Aligned_cols=45  Identities=16%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|+ ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2ytg_A            2 SSGSSGT-GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCCS-SCCSEECTTTCCEESSSHHHHTTGGGGSSCCSS--CSCCC
T ss_pred             CCCCCCC-CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            5778887 799999999999999999999999999999864  45444

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4e-11  Score=66.86  Aligned_cols=45  Identities=31%  Similarity=0.603  Sum_probs=42.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.8e-11  Score=66.14  Aligned_cols=45  Identities=18%  Similarity=0.293  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2ytn_A            2 SSGSSGT-GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCCS-CCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCC--SCCCC
T ss_pred             CCCcCCC-CCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCC--CCCCC
Confidence            4777787 799999999999999999999999999999865  45443

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.11  E-value=5.1e-11  Score=66.38  Aligned_cols=42  Identities=17%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ema_A            2 SSGSSGT-GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP   43 (46)
T ss_dssp             CSCSSCT-TSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSS
T ss_pred             CCccCCC-CCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCC
Confidence            5778887 79999999999999999999999999999986544

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.4e-11  Score=66.23  Aligned_cols=45  Identities=18%  Similarity=0.214  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2eov_A            2 SSGSSGT-GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHS--GPSSG   46 (46)
T ss_dssp             CCCCCCS-SCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSC--CSCCC
T ss_pred             CCCCCCC-CCCCccCCccChhhCCHHHHHHHHHhcCCCCCC--CCCCC
Confidence            5788887 799999999999999999999999999999864  45544

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.11  E-value=5.4e-11  Score=66.27  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|+|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2em0_A            2 SSGSSGM-GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCSC-CCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCS--CSSCC
T ss_pred             CCcCccC-CCcCeECCCCCcccCCHHHHHHHHHHcCCCCCc--CCCCC
Confidence            5788887 799999999999999999999999999999865  45444

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.4e-11  Score=66.63  Aligned_cols=45  Identities=18%  Similarity=0.247  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2emp_A            2 SSGSSGT-GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCSCSS-CCCSEECSSSCCEESCHHHHHHHHHHHHCCSCC--SCCCC
T ss_pred             CcccccC-CCcCeECCCCCchhCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            5788887 799999999999999999999999999999865  45443

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.8e-11  Score=66.15  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+.+|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~c   46 (46)
T 2ep2_A            2 SSGSSGT-GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CSSSCSS-CCCSEECSSSCCEESSHHHHHHHHHTTSSCCSC--CSCCC
T ss_pred             CCCCCCC-CCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            5777787 799999999999999999999999999999865  45443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=6.1e-11  Score=66.30  Aligned_cols=45  Identities=27%  Similarity=0.501  Sum_probs=42.8

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhh-hcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~C  105 (198)
                      .|+++|.++++|.|+.|++.|.....|..|++ +|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            58899999999999999999999999999999 9999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=4.2e-11  Score=66.73  Aligned_cols=45  Identities=20%  Similarity=0.363  Sum_probs=42.8

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.8e-11  Score=66.10  Aligned_cols=45  Identities=16%  Similarity=0.213  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|+ ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2emm_A            2 SSGSSGT-GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCSCSS-CCCSEECSSSCCEESSHHHHHHHHHHHSCCCTT--SSSCC
T ss_pred             CCcCCcC-CCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            4778887 799999999999999999999999999999864  45444

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.5e-11  Score=66.25  Aligned_cols=45  Identities=20%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2eoq_A            2 SSGSSGT-GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCSS-SSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSS--SCCCC
T ss_pred             CCCCCCC-CCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            5777787 799999999999999999999999999999865  45444

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.5e-11  Score=66.25  Aligned_cols=45  Identities=20%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|+.|++.|.+.+.|..|+++|.+++||  .|++|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~c   46 (46)
T 2ytk_A            2 SSGSSGS-GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCSS-SSCSEECSSSCCEESSHHHHHHHHHHHSSSSCS--SCCCC
T ss_pred             CCcccCC-CCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCC--CCCCC
Confidence            5778887 799999999999999999999999999999865  45443

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.5e-11  Score=66.20  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2epw_A            2 SSGSSGT-GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHS--GPSSG   46 (46)
T ss_dssp             CCCCCCC-CCCSEECSSSCCEESSSHHHHHHHHHCCSCCCS--CCCCC
T ss_pred             cCcccCC-CCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            5778887 799999999999999999999999999999864  45544

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.5e-11  Score=66.18  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|+|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2eoe_A            2 SSGSSGT-GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPS--GPSSG   46 (46)
T ss_dssp             CCSSCCC-CCCSSEETTTTEECSSHHHHHHHHGGGSCCCSC--SSCCC
T ss_pred             CCCCCCC-CCCCeECCCcChhhCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            5777787 799999999999999999999999999999865  45444

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=5.8e-11  Score=66.18  Aligned_cols=45  Identities=18%  Similarity=0.124  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2em5_A            2 SSGSSGS-STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCCC-CSCSEECSSSCCEESSHHHHHHHHTTTSCSCCS--SCCCC
T ss_pred             CCcCCCC-CCCCeECCcCCCccCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            5778887 799999999999999999999999999999865  45544

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.8e-11  Score=66.10  Aligned_cols=45  Identities=16%  Similarity=0.176  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2eq4_A            2 SSGSSGT-GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCSS-CCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCC--CCCCC
T ss_pred             CCcccCC-CCCCeECCCCCCccCchHHHHHHHHhcCCCCCC--CCCCC
Confidence            4778887 799999999999999999999999999999864  45544

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.1e-11  Score=66.01  Aligned_cols=45  Identities=18%  Similarity=0.188  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|+|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2eop_A            2 SSGSSGT-GEKPHECRECGKSFSFNSQLIVHQRIHTGENPS--GPSSG   46 (46)
T ss_dssp             CCCCSCC-CCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCS--CCCCC
T ss_pred             CCccccC-CCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            5778887 799999999999999999999999999999864  45544

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.2e-11  Score=66.02  Aligned_cols=45  Identities=20%  Similarity=0.267  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+.+|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2en1_A            2 SSGSSGS-GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPS--GPSSG   46 (46)
T ss_dssp             CSTTCCC-CCCSEEETTTTEEESSHHHHHHHGGGGSCCCCS--CCCCC
T ss_pred             CcccCCC-CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            5778787 799999999999999999999999999999854  45544

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5e-11  Score=66.41  Aligned_cols=45  Identities=24%  Similarity=0.351  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.  |+.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~--C~~c   46 (46)
T 2emh_A            2 SSGSSGT-GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG--PSSG   46 (46)
T ss_dssp             CCCCSCS-CCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSS--SCCC
T ss_pred             CCCCCCC-CCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCC--CCCC
Confidence            5778887 7999999999999999999999999999998654  5443

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.4e-11  Score=65.96  Aligned_cols=45  Identities=18%  Similarity=0.281  Sum_probs=38.8

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|.+|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~--~C~~c   46 (46)
T 2eq0_A            2 SSGSSGT-GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCCTT-CCCCEECTTTCCEESSHHHHHHHHTTTCCCCCS--CCSCC
T ss_pred             CCCcCCC-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            4777777 799999999999999999999999999999865  45444

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.9e-11  Score=65.86  Aligned_cols=42  Identities=14%  Similarity=0.215  Sum_probs=37.2

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      .|++.|. ++++|+|++|++.|.+.+.|..|+++|++++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emf_A            2 SSGSSGT-GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSS-SSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCC
T ss_pred             ccccccC-CCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            4777787 79999999999999999999999999999986544

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=7.8e-11  Score=65.57  Aligned_cols=45  Identities=24%  Similarity=0.308  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++|  |.|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~--~~C~~C   46 (46)
T 2eme_A            2 SSGSSGS-GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP--SGPSSG   46 (46)
T ss_dssp             CCCCTTC-CCCSEECSSSCCEESSHHHHHHHHGGGCCCSC--CSSCCC
T ss_pred             CCCCCCC-CCCCeECCCCChhhCCHHHHHHHHHhcCCCCC--CCCCCC
Confidence            5777887 79999999999999999999999999999986  455544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=6.8e-11  Score=65.82  Aligned_cols=45  Identities=20%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2en8_A            2 SSGSSGS-GEKSHTCDECGKNFCYISALRIHQRVHMGEKCS--GPSSG   46 (46)
T ss_dssp             CCCCCCC-CCSSEECTTTCCEESSHHHHHHHHTTTCCSCSS--CCSCC
T ss_pred             CccccCC-CCCCeECCCcCcccCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            5788887 799999999999999999999999999999865  45444

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.09  E-value=7.7e-11  Score=65.58  Aligned_cols=45  Identities=18%  Similarity=0.215  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2em9_A            2 SSGSSGT-GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPS--GPSSG   46 (46)
T ss_dssp             CSCCSCC-CCCSEECSSSCCEESSHHHHHHHGGGGTSCCCC--STTCC
T ss_pred             CCCCCCC-CCcCeECCccccccCChHHHHHHHHHhCCCCCC--CCCCC
Confidence            4778887 799999999999999999999999999999864  45544

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.09  E-value=3e-11  Score=69.84  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=42.7

Q ss_pred             cccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761        125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus       125 ~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      .+.|..|++.|. ++++|.|+.|++.|...+.|..|+.+|++++||.
T Consensus         9 ~~~l~~h~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            9 PPGTEKPRSRSQ-SEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             SSCCCCCHHHHT-SSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             CcchhhHHHhcC-CCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            788899999998 7999999999999999999999999999999763

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=7.1e-11  Score=65.76  Aligned_cols=43  Identities=26%  Similarity=0.413  Sum_probs=38.2

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGT-GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSS-CCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCC-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            5788887 799999999999999999999999999999865543

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=7.2e-11  Score=65.75  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=38.8

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2ene_A            2 SSGSSGT-GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCSSCC-CSSSEECSSSCCEESSHHHHHHHHTTTCCCCCC--SCCCC
T ss_pred             CcccCCC-CCCCeECCCCCchhCChHHHHHHHhhcCCCCCC--CCCCC
Confidence            4777887 799999999999999999999999999999864  45544

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=7.8e-11  Score=65.59  Aligned_cols=45  Identities=20%  Similarity=0.225  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2ytd_A            2 SSGSSGS-GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPS--GPSSG   46 (46)
T ss_dssp             CCCCCSC-CCCSEECSSSCCEESSHHHHHHHHHHHTCCCSS--CSSCC
T ss_pred             CCccccC-CCcCeECCCCCCeeCChHHHHHHHHHcCCCCCC--CCCCC
Confidence            5778887 799999999999999999999999999999865  45444

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=7.2e-11  Score=65.09  Aligned_cols=44  Identities=20%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      |++.|. ++++|+|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         1 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   44 (44)
T 2emx_A            1 GSSGSS-GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPS--GPSSG   44 (44)
T ss_dssp             CCCCCS-SCCCEECSSSSCEESSHHHHHHHHHHHTSSCSC--SCCCC
T ss_pred             CCCCcC-CCcCccCCCCCcccCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            556676 799999999999999999999999999999864  55544

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.3e-11  Score=66.28  Aligned_cols=45  Identities=18%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2yu8_A            2 SSGSSGT-GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPS--GPSSG   46 (46)
T ss_dssp             CCCCCCC-CCSSEECSSSCCEESSSHHHHHHTHHHHSCCCS--CSCCC
T ss_pred             CcCcCCC-CCCCeECCcCCchhCCHHHHHHHHHhcCCCCCC--CCCCC
Confidence            5778887 799999999999999999999999999999865  45444

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=8.9e-11  Score=65.36  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2em7_A            2 SSGSSGT-GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCCSSS-CCCSEECSSSCCEESCHHHHHHHGGGGTTCCCS--STTCC
T ss_pred             CCCCCCC-CCcCccCCCccchhCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            4777777 799999999999999999999999999999865  45444

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.08  E-value=7.9e-11  Score=65.61  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=38.7

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++|  |.|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~--~~C~~C   46 (46)
T 2ely_A            2 SSGSSGT-GEKPFKCVECGKGFSRRSALNVHHKLHTGEKP--SGPSSG   46 (46)
T ss_dssp             CCCCCCC-CCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS--CSCCCC
T ss_pred             CCCCCCC-CCCCcccCccCcccCCHHHHHHHHHHcCCCCC--CCCCCC
Confidence            4777787 79999999999999999999999999999986  455544

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.6e-11  Score=65.87  Aligned_cols=45  Identities=18%  Similarity=0.279  Sum_probs=39.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|+ ++++|.|++|++.|.+.+.|..|+++|++++|  |.|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~--~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGT-GEKPYKCNECGKAFSQTSKLARHQRIHTGEKP--SGPSSG   46 (46)
T ss_dssp             CSSCCCS-SCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC--CCSCCC
T ss_pred             CCCcCCC-CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC--CCCCCC
Confidence            5778887 79999999999999999999999999999985  455544

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.9e-11  Score=66.46  Aligned_cols=45  Identities=27%  Similarity=0.507  Sum_probs=42.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            478899999999999999999999999999999999999999987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=8.5e-11  Score=64.03  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=37.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|
T Consensus         1 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSG-GEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCC-SCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccC-CCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3677777 79999999999999999999999999999997653

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=9.4e-11  Score=65.29  Aligned_cols=43  Identities=16%  Similarity=0.288  Sum_probs=38.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|+|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGT-GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSC-CCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcC-CCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777887 799999999999999999999999999999976654

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=7.2e-11  Score=65.75  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=38.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~h~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2en6_A            2 SSGSSGS-GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCSCCCC-SSCCEEETTTTEEESSHHHHHHHHHHHSSCCCS--SSCCC
T ss_pred             CCCCccC-CCcCeECCCCCcccCchHHHHHHHHHcCCCCCC--CCCCC
Confidence            4777787 799999999999999999999999999999864  45544

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.07  E-value=1.1e-10  Score=63.58  Aligned_cols=41  Identities=29%  Similarity=0.444  Sum_probs=36.5

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      |++.|. ++++|+|++|++.|.+.+.|..|+++|++++||.|
T Consensus         1 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSS-GENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSS-SCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCC-CCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            556676 79999999999999999999999999999997654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.1e-10  Score=65.09  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=38.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~h~~~h~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2elz_A            2 SSGSSGS-VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTS--GPSSG   46 (46)
T ss_dssp             CCCSCCC-CCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCC--CSCCC
T ss_pred             CCCCCCC-CCCCeeCcccCchhCCHHHHHHHHHhcCCCCCC--CCCCC
Confidence            3677777 799999999999999999999999999999864  55544

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=9.6e-11  Score=65.23  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2epz_A            2 SSGSSGT-GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPS--GPSSG   46 (46)
T ss_dssp             CCCSSCC-CCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCC--SSCCC
T ss_pred             CCCCCcC-CCCCeECCCCCceeCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            3677777 799999999999999999999999999999865  45544

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1e-10  Score=65.12  Aligned_cols=45  Identities=20%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|++++|  |.|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~--~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGA-GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP--SGPSSG   46 (46)
T ss_dssp             CCSSCSS-CCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS--SCCCCC
T ss_pred             CCCcCcC-CCCCcCCCccChhhCChHHHHHHHHHhCCCCC--CCCCCC
Confidence            3677777 79999999999999999999999999999986  455544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=8.7e-11  Score=65.43  Aligned_cols=45  Identities=29%  Similarity=0.587  Sum_probs=42.5

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488899999999999999999999999999999999999999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.1e-10  Score=65.02  Aligned_cols=43  Identities=21%  Similarity=0.333  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGT-GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSS-SSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccC-CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5778887 799999999999999999999999999999976653

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1e-10  Score=65.16  Aligned_cols=43  Identities=19%  Similarity=0.313  Sum_probs=38.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|+|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGT-GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCC-SCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccC-CCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            5788887 799999999999999999999999999999976654

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.07  E-value=1.2e-10  Score=64.92  Aligned_cols=43  Identities=16%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGT-GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCC-CCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCC-CCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777887 799999999999999999999999999999976654

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.1e-10  Score=64.91  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGT-GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSC-CCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCC-CCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            5778787 799999999999999999999999999999976654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=64.98  Aligned_cols=45  Identities=22%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2yso_A            2 SSGSSGS-REKSHQCRECGEIFFQYVSLIEHQVLHMGQKNS--GPSSG   46 (46)
T ss_dssp             CCSCCSS-CCCCEECTTTCCEESSHHHHHHHHHHHSCCSCC--CTTCC
T ss_pred             CcccccC-CCCCEEccccChhhCCHHHHHHHHHHhCCCCCC--CCCCC
Confidence            4777777 789999999999999999999999999999864  45444

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.3e-10  Score=64.66  Aligned_cols=43  Identities=23%  Similarity=0.326  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGS-GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCC-CSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCC-CCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5778787 799999999999999999999999999999976653

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.2e-10  Score=64.84  Aligned_cols=43  Identities=21%  Similarity=0.347  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGT-GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCS-SCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCC-CCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777777 799999999999999999999999999999976654

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.1e-10  Score=64.20  Aligned_cols=42  Identities=24%  Similarity=0.475  Sum_probs=37.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+.+|.+++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            2 SSGSSGT-GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSSCCS-CCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCccCCC-CCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            5777787 79999999999999999999999999999997654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.3e-10  Score=64.65  Aligned_cols=43  Identities=14%  Similarity=0.220  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGT-GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCS-SCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccC-CCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            4777787 799999999999999999999999999999976654

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=9.9e-11  Score=65.19  Aligned_cols=43  Identities=19%  Similarity=0.253  Sum_probs=38.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|...+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGT-GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCS-SCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCC-CCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5778887 799999999999999999999999999999976654

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.06  E-value=1.3e-10  Score=64.70  Aligned_cols=45  Identities=16%  Similarity=0.342  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~h~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2el6_A            2 SSGSSGA-GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPS--GPSSG   46 (46)
T ss_dssp             CSCCSSC-CCCSEECSSSSCEESSHHHHHHHHGGGCCSSCC--SCCCC
T ss_pred             CCCCCCC-CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            3667777 799999999999999999999999999999864  45544

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.06  E-value=2.4e-11  Score=72.45  Aligned_cols=50  Identities=20%  Similarity=0.493  Sum_probs=45.7

Q ss_pred             HhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhc
Q psy11761         59 LLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN  111 (198)
Q Consensus        59 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~  111 (198)
                      |..|+++|++++||.|+.|++.|.....|.   ++|.+++||.|+.|++.|..
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~   51 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEE   51 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEE
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCcccc
Confidence            567999999999999999999999877765   88999999999999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=64.77  Aligned_cols=45  Identities=18%  Similarity=0.208  Sum_probs=38.3

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|++.|++++||  .|..|
T Consensus         2 ~h~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2enc_A            2 SSGSSGS-GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPS--GPSSG   46 (46)
T ss_dssp             CCSSCCC-CCCSEECSSSCCEESSHHHHHHHHHHSCCSSCC--SSCCC
T ss_pred             CCCCCCC-CCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCC--CCCCC
Confidence            3677777 799999999999999999999999999999864  45544

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.3e-10  Score=64.66  Aligned_cols=43  Identities=19%  Similarity=0.325  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGT-GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCC-SCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCC-CCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777787 789999999999999999999999999999976654

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.2e-10  Score=64.77  Aligned_cols=43  Identities=19%  Similarity=0.372  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|...+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGT-GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCC-CCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCC-CCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            4777887 799999999999999999999999999999976654

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=9.3e-11  Score=64.60  Aligned_cols=42  Identities=24%  Similarity=0.428  Sum_probs=37.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      .|++.|. ++++|+|++|++.|.+.+.|..|+++|.+++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            2 SSGSSGT-GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSCCSSS-SCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CCccccC-CCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            4778887 79999999999999999999999999999997654

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.4e-10  Score=64.50  Aligned_cols=43  Identities=19%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|+.|++.|.+.+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGT-GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCS-SCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCC-CCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5778887 799999999999999999999999999999976654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1e-10  Score=65.11  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=38.7

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~H~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2ysp_A            2 SSGSSGT-GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPS--GPSSG   46 (46)
T ss_dssp             CCCCCCS-SCCSEEETTTTEEESCHHHHHHHHTTSCSCCSS--CCSCC
T ss_pred             CCCcCCC-CCCCeECCCCCCccCCHHHHHHHHHhhCCCCCC--CCCCC
Confidence            4777777 799999999999999999999999999999864  55544

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-10  Score=64.19  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=37.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            2 SSGSSGT-GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CSCCCSS-SSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCcCCC-CCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            4777787 79999999999999999999999999999997654

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.4e-10  Score=64.45  Aligned_cols=43  Identities=21%  Similarity=0.371  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|...+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGT-GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCC-CCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCC-CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5777887 799999999999999999999999999999976654

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.05  E-value=3.7e-12  Score=76.03  Aligned_cols=55  Identities=15%  Similarity=0.414  Sum_probs=38.6

Q ss_pred             HHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHH
Q psy11761         87 LNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLI  158 (198)
Q Consensus        87 l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~  158 (198)
                      |..|+++|.+++||.|+.|++.|..             .+.|.   +.|. ++++|.|+.||+.|...+++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~-------------~~~l~---~~H~-~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTD-------------LEANQ---LFDP-MTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEH-------------HHHHH---HEET-TTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhcc-------------HHHhH---hhcC-CCCCEECCCCCCccccCcccc
Confidence            3457777888888888888888776             55554   4555 677888888888887665543

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.6e-10  Score=63.60  Aligned_cols=42  Identities=24%  Similarity=0.387  Sum_probs=37.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      +|++.|. ++++|.|+.|++.|.+.+.|..|+++|.+++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            2 SSGSSGH-TRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCCSCCC-CCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             CcccccC-CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            5777787 79999999999999999999999999999997654

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.4e-10  Score=64.57  Aligned_cols=43  Identities=21%  Similarity=0.372  Sum_probs=38.5

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|...+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGT-GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCC-CSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccC-CCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5777887 799999999999999999999999999999976654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.5e-10  Score=64.32  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|...+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGT-GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCC-SCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCC-CCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            4777787 799999999999999999999999999999976654

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.5e-10  Score=64.41  Aligned_cols=43  Identities=21%  Similarity=0.381  Sum_probs=38.3

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGT-GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSC-CCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCC-CCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777787 799999999999999999999999999999976653

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.5e-10  Score=64.38  Aligned_cols=43  Identities=19%  Similarity=0.339  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      .|++.|. ++++|+|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGT-GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCC-CSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccC-CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            4777787 799999999999999999999999999999976654

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.8e-10  Score=64.07  Aligned_cols=44  Identities=30%  Similarity=0.677  Sum_probs=41.5

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.4e-10  Score=64.50  Aligned_cols=43  Identities=19%  Similarity=0.342  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGT-GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCS-CCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCC-CCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            4777787 799999999999999999999999999999976654

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.04  E-value=3.8e-11  Score=73.55  Aligned_cols=58  Identities=28%  Similarity=0.551  Sum_probs=50.4

Q ss_pred             hcCCCCcccCCc--CchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCc--chhhhcChhHHHhhhhhh
Q psy11761         93 IHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLISHHCHK  164 (198)
Q Consensus        93 ~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~  164 (198)
                      .....++|.|..  |++.|..             ...|..|++.|. ++++|+|++  |++.|.....|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~-------------~~~L~~H~~~H~-~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFK-------------SSHLKAHTRTHT-GEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESS-------------HHHHHHHHHHHS-SSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCccccCC-------------HHHHHHHHHhcC-CCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            355678899988  9999998             899999999888 789999965  999999999999998765

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=3.2e-11  Score=69.75  Aligned_cols=44  Identities=20%  Similarity=0.373  Sum_probs=28.6

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhh-hhCCCCCCCcccccccCCCcc
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHC-HKHKQSCLPFISRLFGFDDGD  183 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~-~~~~~~~~~~~~~~~~~~~~~  183 (198)
                      ++++|.|++|++.|.....|..|++ +|.+++  +|.|..|+..+.+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k--~~~C~~C~k~F~~   53 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSER--PHKCQVWVSGPSS   53 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCC--CCCSSSSCCSSCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhcCCCC--CccCCCCCCCCCC
Confidence            4567777777777777777777765 666665  4556666666543

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.8e-10  Score=64.05  Aligned_cols=44  Identities=34%  Similarity=0.655  Sum_probs=41.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.6e-10  Score=62.89  Aligned_cols=41  Identities=29%  Similarity=0.430  Sum_probs=36.3

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      |++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|
T Consensus         1 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSS-GEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSC-SCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcC-CCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            456666 78999999999999999999999999999997654

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.4e-10  Score=64.52  Aligned_cols=43  Identities=19%  Similarity=0.280  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGT-GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSS-CCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcC-CCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            4777777 799999999999999999999999999999976654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.2e-10  Score=64.91  Aligned_cols=44  Identities=23%  Similarity=0.300  Sum_probs=38.0

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      |++.|. ++++|+|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         3 h~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2ytm_A            3 SGSSGT-GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPS--GPSSG   46 (46)
T ss_dssp             SCCCCS-SCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCC--CCCCC
T ss_pred             CCcCCC-CCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            667777 799999999999999999999999999999864  55544

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.7e-10  Score=63.57  Aligned_cols=42  Identities=19%  Similarity=0.452  Sum_probs=37.8

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      +|++.|. ++++|.|++|++.|...+.|..|+.+|++++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGA-GENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCS-CCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCccccC-CCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            4777777 79999999999999999999999999999997654

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.1e-10  Score=63.80  Aligned_cols=44  Identities=34%  Similarity=0.654  Sum_probs=41.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.1e-10  Score=63.79  Aligned_cols=44  Identities=30%  Similarity=0.683  Sum_probs=41.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.7e-10  Score=64.16  Aligned_cols=43  Identities=14%  Similarity=0.213  Sum_probs=38.3

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~h~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGA-GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCC-SSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCC-CCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4777777 799999999999999999999999999999976654

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2e-10  Score=63.85  Aligned_cols=44  Identities=36%  Similarity=0.613  Sum_probs=41.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.7e-10  Score=64.21  Aligned_cols=43  Identities=19%  Similarity=0.223  Sum_probs=38.2

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGM-GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCC-CCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccC-CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4777777 799999999999999999999999999999976653

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.9e-10  Score=63.94  Aligned_cols=44  Identities=34%  Similarity=0.669  Sum_probs=41.3

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.5e-10  Score=64.44  Aligned_cols=44  Identities=32%  Similarity=0.582  Sum_probs=41.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2e-10  Score=64.15  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=38.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhh-hhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHC-HKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|++ +|.+++|  |.|..|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~--~~C~~C   47 (47)
T 2epx_A            2 SSGSSGT-GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP--SGPSSG   47 (47)
T ss_dssp             CCCCCCC-CCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS--SSCCCC
T ss_pred             ccccccC-CCCCEECCccCchhCChHHHHHHhHhhcCCCCC--CCCCCC
Confidence            4777787 7999999999999999999999999 9999986  455544

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.02  E-value=1.5e-10  Score=64.42  Aligned_cols=44  Identities=36%  Similarity=0.657  Sum_probs=41.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=1.3e-10  Score=67.10  Aligned_cols=48  Identities=29%  Similarity=0.604  Sum_probs=41.6

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhh-hcCCCCcccCCcCchhhhc
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSGIRPFKCTTCDKSFVN  111 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~C~~~f~~  111 (198)
                      ..+.++++|.|++|++.|.....|..|++ +|.++++|.|++|++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            35677889999999999999999999987 8999999999999998864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.2e-10  Score=63.76  Aligned_cols=44  Identities=39%  Similarity=0.703  Sum_probs=41.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.3e-10  Score=63.66  Aligned_cols=43  Identities=21%  Similarity=0.323  Sum_probs=37.8

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            2 SSGSSGS-GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCC-CCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCC-CCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777777 799999999999999999999999999999965543

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=5.6e-11  Score=71.61  Aligned_cols=54  Identities=24%  Similarity=0.458  Sum_probs=33.3

Q ss_pred             CCCCccCccchhcccCchhHHHhhhhcCCCCcccCC-cCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT-TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~-~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      +.++|.|+.|++.|. ...|..|+++ .+++||.|+ .|++.|..             .+.|..|++.|.
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~-------------~~~L~~H~~~hc   61 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVA-------------REDLPGHLKDSC   61 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEE-------------TTTHHHHHHTTS
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCccccc-------------HHHHHHHHHhhc
Confidence            345666666666666 6666666666 666666666 66666665             556666665554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2e-10  Score=63.95  Aligned_cols=43  Identities=21%  Similarity=0.259  Sum_probs=38.0

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      .|++.|. ++++|+|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGS-GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCC-CSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcC-CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677777 799999999999999999999999999999976653

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.6e-10  Score=62.03  Aligned_cols=42  Identities=21%  Similarity=0.469  Sum_probs=39.6

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            678899999999999999999999999999999999999984

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.8e-10  Score=64.10  Aligned_cols=45  Identities=20%  Similarity=0.245  Sum_probs=38.2

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+++||  .|..|
T Consensus         2 ~h~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~--~C~~C   46 (46)
T 2em8_A            2 SSGSSGS-GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLS--GPSSG   46 (46)
T ss_dssp             CCCCCCC-SCCSEECSSSCCEESSHHHHHHHHHHHHCCCCC--CSCCC
T ss_pred             CCCCCCC-CCCCeECcccCchhCCHHHHHHHHHHHcCCCCC--CCCCC
Confidence            3666777 799999999999999999999999999999965  45444

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.01  E-value=2e-10  Score=62.59  Aligned_cols=42  Identities=26%  Similarity=0.490  Sum_probs=39.5

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      |+++|+++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            678899999999999999999999999999999999999985

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.7e-10  Score=64.15  Aligned_cols=44  Identities=32%  Similarity=0.650  Sum_probs=41.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2e-10  Score=62.62  Aligned_cols=41  Identities=24%  Similarity=0.249  Sum_probs=36.5

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      |++.|. ++++|+|++|++.|.+.+.|..|+++|++++||.|
T Consensus         2 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSG-GEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCS-SSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccC-CCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            566677 78999999999999999999999999999997653

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2e-10  Score=63.83  Aligned_cols=44  Identities=34%  Similarity=0.671  Sum_probs=41.3

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            58889999999999999999999999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.8e-10  Score=64.08  Aligned_cols=44  Identities=34%  Similarity=0.647  Sum_probs=41.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.6e-10  Score=63.44  Aligned_cols=44  Identities=39%  Similarity=0.751  Sum_probs=41.3

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.7e-10  Score=64.19  Aligned_cols=44  Identities=30%  Similarity=0.566  Sum_probs=41.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            48899999999999999999999999999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.3e-10  Score=62.23  Aligned_cols=42  Identities=29%  Similarity=0.605  Sum_probs=39.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478899999999999999999999999999999999999987

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.7e-10  Score=62.88  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=36.8

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      |++.|. ++++|.|+.|++.|.+.+.|..|+++|.+++||.|
T Consensus         2 H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSG-GEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCC-SSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccC-CCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            666777 79999999999999999999999999999997653

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.01  E-value=2.4e-10  Score=62.20  Aligned_cols=41  Identities=22%  Similarity=0.301  Sum_probs=36.5

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      |++.|. ++++|+|++|++.|.+.+.|..|+++|.+++||.|
T Consensus         2 H~~~H~-~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSG-GETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCC-SSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCC-CCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            566676 78999999999999999999999999999997654

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2e-10  Score=63.91  Aligned_cols=44  Identities=36%  Similarity=0.681  Sum_probs=40.7

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      ++++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            46788999999999999999999999999999999999999987

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.3e-10  Score=63.71  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=37.3

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      |++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         3 h~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGT-GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCS-SCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCC-CCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            666777 799999999999999999999999999999976654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.6e-10  Score=63.45  Aligned_cols=44  Identities=36%  Similarity=0.659  Sum_probs=40.9

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|.++++|.|++|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            47889999999999999999999999999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.9e-10  Score=62.65  Aligned_cols=41  Identities=27%  Similarity=0.355  Sum_probs=37.6

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      .|++.|. ++++|+|++|++.|.+.+.|..|+++|++++||.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            2 SSGSSGS-GEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCC-CCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCCcccC-CCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            4778887 7999999999999999999999999999999765

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2e-10  Score=63.89  Aligned_cols=43  Identities=21%  Similarity=0.384  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|...+.|..|+.+|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGT-GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSC-CCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCC-CCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777787 799999999999999999999999999999976654

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.6e-10  Score=63.44  Aligned_cols=44  Identities=34%  Similarity=0.647  Sum_probs=41.5

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            57889999999999999999999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.1e-10  Score=63.80  Aligned_cols=44  Identities=30%  Similarity=0.626  Sum_probs=41.3

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.2e-10  Score=63.08  Aligned_cols=44  Identities=30%  Similarity=0.613  Sum_probs=41.3

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|+++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            48889999999999999999999999999999999999999963

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.1e-10  Score=63.18  Aligned_cols=42  Identities=19%  Similarity=0.363  Sum_probs=37.8

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      +|++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|
T Consensus         2 ~H~~~H~-~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGT-DSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCC-CCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCC-CCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            4777787 79999999999999999999999999999997654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.4e-10  Score=63.53  Aligned_cols=44  Identities=32%  Similarity=0.591  Sum_probs=41.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.6e-10  Score=62.70  Aligned_cols=43  Identities=26%  Similarity=0.451  Sum_probs=40.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5888999999999999999999999999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.3e-10  Score=63.61  Aligned_cols=44  Identities=34%  Similarity=0.695  Sum_probs=41.3

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            58889999999999999999999999999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.1e-10  Score=63.13  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      |++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         3 h~~~h~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGT-GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCC-CSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcC-CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566677 789999999999999999999999999999976654

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=3e-10  Score=62.54  Aligned_cols=43  Identities=23%  Similarity=0.445  Sum_probs=40.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|.+++||.|+.|++.|.....|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            5889999999999999999999999999999999999999984

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.8e-10  Score=64.07  Aligned_cols=43  Identities=21%  Similarity=0.407  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|+|++|++.|.+.+.|..|+++|.+++||.|.
T Consensus         2 ~h~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGS-GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSS-CCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCC-CCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777777 799999999999999999999999999999976654

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=62.59  Aligned_cols=43  Identities=30%  Similarity=0.580  Sum_probs=40.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999999999999985

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=63.99  Aligned_cols=44  Identities=32%  Similarity=0.678  Sum_probs=41.5

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.6e-10  Score=63.43  Aligned_cols=44  Identities=34%  Similarity=0.602  Sum_probs=41.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999963

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=63.94  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=38.4

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +|++.|. ++++|.|++|++.|...+.|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGT-GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSC-CCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccC-CCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            4777887 799999999999999999999999999999976653

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=2.9e-10  Score=62.90  Aligned_cols=43  Identities=19%  Similarity=0.376  Sum_probs=40.2

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCc
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD  106 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~  106 (198)
                      .+|+++++|.|+.|++.|.....|..|+++|.++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4688899999999999999999999999999999999999996

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.3e-10  Score=63.66  Aligned_cols=44  Identities=27%  Similarity=0.487  Sum_probs=41.5

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      +|+++|+++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=5.3e-10  Score=62.14  Aligned_cols=44  Identities=34%  Similarity=0.713  Sum_probs=40.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            37788999999999999999999999999999999999999963

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.7e-10  Score=62.66  Aligned_cols=43  Identities=30%  Similarity=0.496  Sum_probs=40.5

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4889999999999999999999999999999999999999985

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.6e-10  Score=62.21  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=40.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5889999999999999999999999999999999999999985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.3e-10  Score=63.64  Aligned_cols=44  Identities=27%  Similarity=0.542  Sum_probs=41.1

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      .+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35788999999999999999999999999999999999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=4e-10  Score=62.05  Aligned_cols=41  Identities=17%  Similarity=0.297  Sum_probs=36.8

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      |++.|. ++++|.|++|++.|...+.|..|+++|.+++||.|
T Consensus         3 h~~~h~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGA-AKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSCS-SSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCC-CCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            666777 78999999999999999999999999999997664

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.9e-10  Score=62.72  Aligned_cols=42  Identities=17%  Similarity=0.310  Sum_probs=37.2

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCC-CCCCCc
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHK-QSCLPF  172 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~-~~~~~~  172 (198)
                      .|++.|. ++++|.|++|++.|.+.+.|..|+++|.+ ++||.|
T Consensus         2 ~H~~~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A            2 SSGSSGQ-KEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             CCCCCCC-CSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             CCccccC-CCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            3677777 78999999999999999999999999999 887654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=3.1e-10  Score=63.81  Aligned_cols=44  Identities=27%  Similarity=0.566  Sum_probs=36.6

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCch
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDK  107 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~  107 (198)
                      ..+.++++|.|++|++.|.....|..|+++|.+++||.|++|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            34667788888888888888888888888888888888888874

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.9e-10  Score=62.66  Aligned_cols=44  Identities=34%  Similarity=0.695  Sum_probs=41.3

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999963

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.3e-10  Score=62.54  Aligned_cols=44  Identities=30%  Similarity=0.572  Sum_probs=41.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCC-CCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG-IRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~k~~~C~~  104 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+ ++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999999999999999999999 99999964

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=4.9e-10  Score=61.00  Aligned_cols=41  Identities=29%  Similarity=0.583  Sum_probs=38.7

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (198)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            77889999999999999999999999999999999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3e-10  Score=63.16  Aligned_cols=44  Identities=27%  Similarity=0.501  Sum_probs=41.4

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999973

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.93  E-value=3e-10  Score=69.44  Aligned_cols=59  Identities=27%  Similarity=0.653  Sum_probs=41.9

Q ss_pred             cCCCCCCCccCcc--chhcccCchhHHHhhhhcCCCCcccCCc--CchhhhcccCCCcccCCCcCccccccccccc
Q psy11761         64 CPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (198)
Q Consensus        64 ~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (198)
                      ......++|.|..  |++.|.....|..|+++|.++++|.|++  |++.|..             ...|..|++.|
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~-------------~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR-------------SDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESS-------------HHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCC-------------HHHHHhHhhcC
Confidence            3445566777776  7777777777777777777777777754  7777776             67777776543

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=6.9e-10  Score=61.64  Aligned_cols=43  Identities=21%  Similarity=0.234  Sum_probs=36.1

Q ss_pred             ccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        132 SCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       132 ~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      .+.|. ++++|.|++|++.|.+.+.|..|+++|++++|  |.|..|
T Consensus         4 ~~~h~-~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~--~~C~~C   46 (46)
T 2ep0_A            4 GSSGT-GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP--SGPSSG   46 (46)
T ss_dssp             CCSST-TCCSEECSSSCCEESSHHHHHHHHTTTSSSCC--CSCCCC
T ss_pred             CCCCC-CCCCeeCcccCcccCChHHHHHHHHHhCCCCC--CCCCCC
Confidence            34555 78999999999999999999999999999986  455544

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.92  E-value=6e-10  Score=60.56  Aligned_cols=41  Identities=32%  Similarity=0.434  Sum_probs=38.9

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (198)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            67889999999999999999999999999999999999987

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.5e-10  Score=61.78  Aligned_cols=43  Identities=28%  Similarity=0.481  Sum_probs=40.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|+++++|.|++|++.|.....|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999999999999984

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=7.7e-10  Score=60.84  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=40.2

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            3788899999999999999999999999999999999999984

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.5e-10  Score=62.88  Aligned_cols=43  Identities=23%  Similarity=0.405  Sum_probs=41.0

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5889999999999999999999999999999999999999996

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.1e-09  Score=60.92  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=35.8

Q ss_pred             ccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        132 SCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       132 ~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      ++.|. ++++|.|++|++.|.+.+.|..|+++|++++||.|.
T Consensus         4 ~~~h~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGH-GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCC-CCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCC-CCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            34555 789999999999999999999999999999976654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=2.2e-10  Score=64.41  Aligned_cols=43  Identities=26%  Similarity=0.384  Sum_probs=39.5

Q ss_pred             hcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchh
Q psy11761         93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQ  149 (198)
Q Consensus        93 ~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k  149 (198)
                      .+.++++|.|..|++.|..             ...|..|++.|+ ++++|.|++|+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~-------------~~~L~~H~~~H~-~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRD-------------VYHLNRHKLSHS-GEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESS-------------HHHHHHHGGGSC-SCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCC-------------HHHHHHHHHhcC-CCCCccCCCCCC
Confidence            4678899999999999998             999999999998 799999999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.4e-10  Score=61.15  Aligned_cols=41  Identities=34%  Similarity=0.664  Sum_probs=39.1

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (198)
                      |+++|+++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            78899999999999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=1e-09  Score=60.63  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=34.7

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCccccccc
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLFG  178 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~~  178 (198)
                      ++++|.|+.|++.|...+.|..|+++|+++++  |.|+.||
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~--~~C~~cg   45 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG--KSGPSSG   45 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHHHHSCCCC--CCCCCCC
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHHHccCCCC--CCCcCCC
Confidence            78999999999999999999999999999985  5566664

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=9.5e-10  Score=60.78  Aligned_cols=40  Identities=23%  Similarity=0.480  Sum_probs=35.1

Q ss_pred             ccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        132 SCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       132 ~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      .+.|. ++++|+|++|++.|.+.+.|..|+++|.+++||.|
T Consensus         4 ~~~h~-~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            4 GSSGT-GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCCCC-SCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCC-CCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            44555 78999999999999999999999999999997654

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.89  E-value=2.3e-10  Score=66.08  Aligned_cols=52  Identities=17%  Similarity=0.217  Sum_probs=47.9

Q ss_pred             ccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCccc
Q psy11761         50 HKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK  101 (198)
Q Consensus        50 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~  101 (198)
                      ++.|.....|..|+++|+++++|.|+.|++.|.....|..|+++|++++||+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            4567888889999999999999999999999999999999999999999874

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.2e-09  Score=61.18  Aligned_cols=44  Identities=25%  Similarity=0.554  Sum_probs=40.5

Q ss_pred             cccCCCCCCCccCc--cchhcccCchhHHHhhhhcCCCCcccCCcC
Q psy11761         62 HNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTC  105 (198)
Q Consensus        62 H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  105 (198)
                      |.++|+++++|.|.  .|++.|.....|..|+++|.+++||.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56788999999998  899999999999999999999999999887

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=1.4e-09  Score=58.73  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=33.4

Q ss_pred             cccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        135 NSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       135 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      |. ++++|.|+.|++.|...+.|..|+++|++++||.|
T Consensus         5 h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SS-GQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CC-CCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cC-CCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            44 78999999999999999999999999999997653

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.4e-09  Score=59.83  Aligned_cols=43  Identities=26%  Similarity=0.492  Sum_probs=40.2

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      .|+++|+++++|.|++|++.|.....|..|+++|.+++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            5889999999999999999999999999999999999999873

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.7e-09  Score=60.06  Aligned_cols=43  Identities=26%  Similarity=0.475  Sum_probs=39.7

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      .+++|+++++|.|+.|++.|.....|..|+++|.+++||.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            4678899999999999999999999999999999999999964

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.1e-09  Score=60.57  Aligned_cols=43  Identities=33%  Similarity=0.583  Sum_probs=38.9

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      +.++|.++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            4677889999999999999999999999999999999999864

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=7.1e-11  Score=73.18  Aligned_cols=66  Identities=17%  Similarity=0.239  Sum_probs=43.6

Q ss_pred             hHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761         86 NLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus        86 ~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      .|..|++++.+++++.|+.|++.|.              .+.|..|. .+. +++++.|+.|++.|. +..|..|+.++.
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~--------------~~~L~~H~-~~c-~~~~~~C~~C~~~~~-~~~l~~H~~~c~   66 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS--------------ILKLKEHE-DYC-GARTELCGNCGRNVL-VKDLKTHPEVCG   66 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC--------------HHHHHHHH-HHH-HHCEEECSSSCCEEE-TTGGGTHHHHBT
T ss_pred             HHHhhCcccCCCcccCCcccChHhh--------------HHHHHHHH-hHc-CCCceEcccCCCcCc-HHHHHHHHHHcc
Confidence            3556666677777777777777764              56677776 555 567777777777665 357777776666


Q ss_pred             CCC
Q psy11761        166 KQS  168 (198)
Q Consensus       166 ~~~  168 (198)
                      +++
T Consensus        67 ~~~   69 (75)
T 2d9k_A           67 REG   69 (75)
T ss_dssp             TBS
T ss_pred             CCc
Confidence            543

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.9e-10  Score=61.42  Aligned_cols=43  Identities=21%  Similarity=0.320  Sum_probs=35.9

Q ss_pred             ccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        132 SCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       132 ~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      ++.|. ++++|.|++|++.|.+.+.|..|+++|++++||  .|..|
T Consensus         4 ~~~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~--~C~~C   46 (46)
T 2ytt_A            4 GSSGE-GEKPYQCSECGKSFSGSYRLTQHWITHTREKPS--GPSSG   46 (46)
T ss_dssp             SSSCS-CCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCC--SCCCC
T ss_pred             CCCCC-CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCC--CCCCC
Confidence            34455 789999999999999999999999999999864  45544

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=2.2e-09  Score=58.68  Aligned_cols=38  Identities=21%  Similarity=0.363  Sum_probs=33.9

Q ss_pred             ccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCc
Q psy11761        134 MNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPF  172 (198)
Q Consensus       134 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~  172 (198)
                      .|. ++++|.|+.|++.|...+.|..|+++|++++||.|
T Consensus         4 ~h~-~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            4 GSS-GNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CCS-SSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CcC-CCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            344 78999999999999999999999999999997654

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2.7e-09  Score=58.32  Aligned_cols=41  Identities=15%  Similarity=0.311  Sum_probs=37.6

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCc
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT  104 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  104 (198)
                      +.|+++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            46888999999999999999999999999999999999964

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=3.7e-09  Score=57.03  Aligned_cols=39  Identities=33%  Similarity=0.605  Sum_probs=35.2

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccC
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (198)
                      ++|+++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            467888999999999999999999999999999999887

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=4.7e-09  Score=58.63  Aligned_cols=44  Identities=16%  Similarity=0.171  Sum_probs=36.7

Q ss_pred             cccccccCCCCeeCC--cchhhhcChhHHHhhhhhhCCCCCCCcccccc
Q psy11761        131 HSCMNSHFPKPYQCD--RCSQFFGDRMNLISHHCHKHKQSCLPFISRLF  177 (198)
Q Consensus       131 H~~~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~~~~~~~~~~~~~  177 (198)
                      |.+.|. ++++|.|+  .|++.|...+.|..|+++|.+++||.  |..|
T Consensus         3 ~~~~H~-~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~--C~~C   48 (48)
T 2ent_A            3 SGSSGT-GEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSG--PSSG   48 (48)
T ss_dssp             CCCSSC-CCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCS--SCCC
T ss_pred             CCCCcC-CCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCC--CCCC
Confidence            455566 78999998  89999999999999999999998654  4443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=4.5e-09  Score=55.28  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=31.7

Q ss_pred             ccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCC
Q psy11761        134 MNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus       134 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      .|. ++++|.|+.|++.|...+.|..|+++|++++|
T Consensus         3 ~h~-~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGS-SGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCC-CCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCC-CCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            455 78999999999999999999999999998875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.74  E-value=6.3e-09  Score=54.71  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.5

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      |++.|. ++++|+|+.|++.|.+.+.|..|+++|.++
T Consensus         2 H~~~h~-~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGST-GIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTC-CSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCC-CCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            667777 799999999999999999999999998764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.6e-09  Score=67.01  Aligned_cols=64  Identities=20%  Similarity=0.373  Sum_probs=57.3

Q ss_pred             hHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         57 SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        57 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      ..|..|+..+.+.+++.|+.|+..|. ...|..|. .+.+++|+.|+.|++.|.              ...|..|+..++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~--------------~~~l~~H~~~c~   66 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL--------------VKDLKTHPEVCG   66 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE--------------TTGGGTHHHHBT
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc--------------HHHHHHHHHHcc
Confidence            46788999999999999999999995 88899999 899999999999999876              678888988776

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.70  E-value=1.1e-08  Score=53.00  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=30.0

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      ++++|.|+.|++.|.+.+.|..|+++|++++|
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            68999999999999999999999999998874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.70  E-value=1e-08  Score=54.63  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      ++++|.|++|++.|...+.|..|+++|.+++||.
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            6899999999999999999999999999999764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.68  E-value=9.6e-09  Score=52.73  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      +||+|+.|++.|...+.|..|+.+|.+++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58999999999999999999999999999764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.67  E-value=1.6e-08  Score=52.39  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=30.0

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      ++++|.|+.|++.|...+.|..|+++|++++|
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            78999999999999999999999999998774

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.66  E-value=1.4e-08  Score=60.85  Aligned_cols=37  Identities=24%  Similarity=0.283  Sum_probs=33.0

Q ss_pred             CCCCeeCCc--chhhhcChhHHHhhh-hhhCCCCCCCccc
Q psy11761        138 FPKPYQCDR--CSQFFGDRMNLISHH-CHKHKQSCLPFIS  174 (198)
Q Consensus       138 ~~~~~~C~~--C~k~f~~~~~L~~H~-~~~~~~~~~~~~~  174 (198)
                      +++||+|++  |+++|...+.|..|+ ++|++++||.+.-
T Consensus        24 GEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           24 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            799999976  999999999999998 6899999887653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=6.2e-09  Score=66.36  Aligned_cols=60  Identities=17%  Similarity=0.392  Sum_probs=50.4

Q ss_pred             hhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccc
Q psy11761         60 LSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS  136 (198)
Q Consensus        60 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~  136 (198)
                      ..+..+|+++++|.|+.|++.|.....|..|+++|++++||.|..|.    .             ...|..|.+.+.
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~-------------~~~~~~~~~~~~   73 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----R-------------RKQLLSKQKYAD   73 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----C-------------CCCCCCCCCCCC
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----h-------------HHHHHhhhcccc
Confidence            33456789999999999999999999999999999999999998764    3             556677777776

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=7.3e-09  Score=66.02  Aligned_cols=45  Identities=16%  Similarity=0.163  Sum_probs=37.5

Q ss_pred             ccccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        128 LAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       128 l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      +..+.+.|. ++++|.|+.|++.|.+.+.|..|+++|.+++||.|.
T Consensus        13 ~~~~~~~H~-~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~   57 (88)
T 1x6f_A           13 IILGNGPRL-QNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK   57 (88)
T ss_dssp             CCCCCCSCC-CCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             eeccccccC-CCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccc
Confidence            344455566 789999999999999999999999999999866554

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=4.7e-08  Score=51.97  Aligned_cols=30  Identities=17%  Similarity=0.177  Sum_probs=28.2

Q ss_pred             CCCCeeCCc--chhhhcChhHHHhhhhhhCCC
Q psy11761        138 FPKPYQCDR--CSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       138 ~~~~~~C~~--C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +++||+|++  |++.|.+++.|..|+++|+++
T Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            6 SGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            789999986  999999999999999999876

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.53  E-value=4.6e-08  Score=51.61  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=31.2

Q ss_pred             CCCCeeCC--cchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761        138 FPKPYQCD--RCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus       138 ~~~~~~C~--~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      ++++|.|+  .|++.|...+.|..|+++|.+++||.
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            68999999  59999999999999999999998763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.52  E-value=9e-09  Score=52.42  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=29.0

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQSCL  170 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~  170 (198)
                      +||+|+.|++.|...+.|..|+++|.+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5899999999999999999999999999875

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.52  E-value=4.1e-08  Score=52.21  Aligned_cols=37  Identities=30%  Similarity=0.564  Sum_probs=29.7

Q ss_pred             CCCCCCccCccchhcccCchhHHHhhhhcCCCCcccC
Q psy11761         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC  102 (198)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  102 (198)
                      |+++++|.|+.|++.|.....|..|+++|.+++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4567788888888888888888888888888888765

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=6.2e-08  Score=50.42  Aligned_cols=31  Identities=16%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++++|+|++|++.|...+.|..|+++|.+++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            6 SGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            6899999999999999999999999998764

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7.8e-08  Score=49.96  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=28.8

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++++|+|+.|++.|...+.|..|+++|++++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            7899999999999999999999999998764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7.8e-08  Score=50.03  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=28.7

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++++|+|++|++.|...+.|..|+++|++++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            7899999999999999999999999998764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=6e-08  Score=50.78  Aligned_cols=37  Identities=24%  Similarity=0.463  Sum_probs=33.3

Q ss_pred             ccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCc
Q psy11761         63 NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (198)
Q Consensus        63 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (198)
                      +++|.++++|.|+.|++.|.....|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3578899999999999999999999999999998864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.49  E-value=9.8e-08  Score=49.93  Aligned_cols=37  Identities=24%  Similarity=0.554  Sum_probs=33.7

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      .|+++|++++||.|+.|++.|.....|..|+++|.++
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            3788999999999999999999999999999998864

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=6.8e-08  Score=50.60  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             ccccCCCCeeCCcchhhhcCh-hHHHhhhhhhCCCC
Q psy11761        134 MNSHFPKPYQCDRCSQFFGDR-MNLISHHCHKHKQS  168 (198)
Q Consensus       134 ~~~~~~~~~~C~~C~k~f~~~-~~L~~H~~~~~~~~  168 (198)
                      .|. ++++|+|+.|++.|... +.|..|+++|.+++
T Consensus         3 ~h~-~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGS-SGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCC-CCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCC-CCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            344 78999999999999999 99999999998764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=1.1e-07  Score=49.40  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=28.9

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++++|.|++|++.|.+.+.|..|+++|++++
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            6899999999999999999999999998764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=8.4e-08  Score=50.38  Aligned_cols=33  Identities=18%  Similarity=0.163  Sum_probs=28.8

Q ss_pred             ccccCCCCeeCCcchhhhcChhHHHhh-hhhhCCC
Q psy11761        134 MNSHFPKPYQCDRCSQFFGDRMNLISH-HCHKHKQ  167 (198)
Q Consensus       134 ~~~~~~~~~~C~~C~k~f~~~~~L~~H-~~~~~~~  167 (198)
                      .|. +++||+|+.|++.|...+.|..| +..|.++
T Consensus         3 ~H~-~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGS-SGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSS-SSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccC-CCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            455 78999999999999999999999 8888653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.42  E-value=8.6e-08  Score=53.31  Aligned_cols=41  Identities=20%  Similarity=0.309  Sum_probs=33.8

Q ss_pred             cccccccccccCCCCeeCC--cchhhhcChhHHHhhhhhhCCCC
Q psy11761        127 NLAQHSCMNSHFPKPYQCD--RCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       127 ~l~~H~~~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++..|...|. ++++|.|+  .|++.|...+.|..|+++|.+++
T Consensus         5 ~~~~~~~~H~-~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            5 GSIDKYVKEM-PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCEEE-TTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHHhccC-CCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3444555566 89999996  69999999999999999998764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=1.6e-07  Score=48.81  Aligned_cols=31  Identities=19%  Similarity=0.401  Sum_probs=28.7

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++++|.|+.|++.|...+.|..|+++|++++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            6899999999999999999999999998764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.40  E-value=2.4e-07  Score=55.54  Aligned_cols=40  Identities=33%  Similarity=0.453  Sum_probs=32.5

Q ss_pred             CCCCCCCccCcc--chhcccCchhHHHhh-hhcCCCCcccCCc
Q psy11761         65 PQMKPRPYKCDT--CEKSFTNSQNLNTHQ-LIHSGIRPFKCTT  104 (198)
Q Consensus        65 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~k~~~C~~  104 (198)
                      ..++++||.|..  |+++|.....|..|+ ++|++++|+.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            356788888865  889998888888886 6888888888865

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=1.7e-07  Score=46.19  Aligned_cols=30  Identities=33%  Similarity=0.650  Sum_probs=27.3

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +++|.|+.|++.|...+.|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            478999999999999999999999998764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.38  E-value=1.6e-07  Score=46.06  Aligned_cols=29  Identities=17%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++|.|+.|++.|...+.|..|+++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999998764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.38  E-value=1.6e-07  Score=52.50  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=27.7

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhh-hhCCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHC-HKHKQSC  169 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~-~~~~~~~  169 (198)
                      ++++|.|++|++.|.+.+.|..|++ +|.++.+
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            7899999999999999999999999 8887764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.37  E-value=2e-07  Score=47.92  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=30.0

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCCCc
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (198)
                      +|+++++|.|+.|++.|.....|..|+++|.+++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            36778899999999999999999999999988764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.37  E-value=2.2e-07  Score=47.90  Aligned_cols=35  Identities=26%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCCCc
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP   99 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~   99 (198)
                      +|.++++|.|+.|++.|.....|..|+++|.+++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            36778899999999999999999999999888764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.36  E-value=2e-07  Score=46.01  Aligned_cols=30  Identities=37%  Similarity=0.525  Sum_probs=27.4

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      ++|.|+.|++.|...+.|..|+.+|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            479999999999999999999999998763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.35  E-value=2.3e-07  Score=45.42  Aligned_cols=29  Identities=17%  Similarity=0.518  Sum_probs=26.4

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++|.|+.|++.|...+.|..|+..|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999998764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.33  E-value=2.8e-07  Score=46.99  Aligned_cols=32  Identities=25%  Similarity=0.527  Sum_probs=25.5

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCCCccc
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK  101 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~  101 (198)
                      +||.|+.|++.|.....|..|+++|+++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46788888888888888888888888887764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.33  E-value=1.4e-07  Score=49.42  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=23.3

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhh
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHH  161 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~  161 (198)
                      +++||+|+.||++|.+.+.|..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            689999999999999999999998

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.30  E-value=3e-07  Score=44.72  Aligned_cols=28  Identities=21%  Similarity=0.501  Sum_probs=25.4

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      +++|.|+.|++.|.+.+.|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4789999999999999999999988764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.29  E-value=2.8e-07  Score=45.04  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=26.5

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++|.|+.|++.|...+.|..|+++|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999998764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.28  E-value=4.1e-07  Score=47.61  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             CCCCeeCCc--chhhhcChhHHHhhhhhhCCCC
Q psy11761        138 FPKPYQCDR--CSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       138 ~~~~~~C~~--C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++++|.|++  |++.|...+.|..|+++|.+++
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            789999995  9999999999999999998764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.27  E-value=5e-07  Score=45.43  Aligned_cols=30  Identities=30%  Similarity=0.729  Sum_probs=27.2

Q ss_pred             CCCeeCC--cchhhhcChhHHHhhhhhhCCCC
Q psy11761        139 PKPYQCD--RCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       139 ~~~~~C~--~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +++|.|+  .|++.|...+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4789999  89999999999999999998764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=2.9e-07  Score=44.95  Aligned_cols=29  Identities=24%  Similarity=0.364  Sum_probs=26.5

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++|.|+.|++.|...+.|..|+.+|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999998764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.60  E-value=1e-07  Score=46.87  Aligned_cols=29  Identities=31%  Similarity=0.573  Sum_probs=26.2

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++|.|+.|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47999999999999999999999998753

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.27  E-value=3.9e-07  Score=43.96  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=24.5

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      +++|.|+.||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999998763

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.26  E-value=4.4e-07  Score=45.32  Aligned_cols=29  Identities=21%  Similarity=0.513  Sum_probs=26.4

Q ss_pred             CCeeCC--cchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCD--RCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~--~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +||.|+  .||+.|...+.|..|+++|.+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  89999999999999999998764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.26  E-value=3.1e-07  Score=44.47  Aligned_cols=27  Identities=19%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      ++||+|+.||+.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999998763

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.24  E-value=4.7e-07  Score=43.53  Aligned_cols=27  Identities=22%  Similarity=0.551  Sum_probs=23.7

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +|+|+.|++.|.+.+.|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            589999999999999999999998763

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.55  E-value=1.4e-07  Score=46.67  Aligned_cols=30  Identities=30%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +++|.|+.|++.|.+.+.|..|++.|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            368999999999999999999999988753

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=7.7e-07  Score=45.99  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=30.7

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      .+|.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            45788899999999999999999999999998764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=9e-07  Score=45.80  Aligned_cols=35  Identities=29%  Similarity=0.522  Sum_probs=29.9

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      ..|.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            35778899999999999999999999999988753

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=7e-07  Score=46.55  Aligned_cols=35  Identities=26%  Similarity=0.560  Sum_probs=30.8

Q ss_pred             cCCCCCCCccCccchhcccCc-hhHHHhhhhcCCCC
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNS-QNLNTHQLIHSGIR   98 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~~k   98 (198)
                      ++|.++++|.|+.|++.|... ..|..|+++|.+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            467889999999999999998 99999999998763

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=1.2e-06  Score=45.19  Aligned_cols=34  Identities=26%  Similarity=0.550  Sum_probs=30.2

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      +|.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            5778899999999999999999999999998764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=8.8e-07  Score=45.85  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=27.9

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      .|.++++|.|+.|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            5677888888888888888888888888887653

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=6.7e-07  Score=46.77  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             ccCCCCCCCccCccchhcccCchhHHHh-hhhcCCC
Q psy11761         63 NCPQMKPRPYKCDTCEKSFTNSQNLNTH-QLIHSGI   97 (198)
Q Consensus        63 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~   97 (198)
                      +++|++++||.|+.|++.|.....|..| ++.|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3568889999999999999999999999 8888764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.17  E-value=1.9e-06  Score=51.48  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      .++||+|..|++.|.+.+.|..|+++|+++..
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            68999999999999999999999999998754

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=6.8e-07  Score=46.89  Aligned_cols=35  Identities=29%  Similarity=0.593  Sum_probs=30.5

Q ss_pred             CCCCCCccCc--cchhcccCchhHHHhhhhcCCCCcc
Q psy11761         66 QMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPF  100 (198)
Q Consensus        66 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~  100 (198)
                      |+++++|.|.  .|++.|.....|..|+++|.++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4678899999  5999999999999999999988876

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.15  E-value=8.8e-07  Score=43.65  Aligned_cols=29  Identities=31%  Similarity=0.510  Sum_probs=25.4

Q ss_pred             CCeeCCcchhhhcChhHHHhh-hhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISH-HCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H-~~~~~~~~  168 (198)
                      ++|.|+.|++.|.+.+.|..| +.+|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            479999999999999999999 67887653

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=1.2e-06  Score=46.38  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             CCCCCCCccCcc--chhcccCchhHHHhhhhcCCC
Q psy11761         65 PQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        65 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      .+++++||.|+.  |++.|.....|..|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            467789999986  999999999999999999875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.13  E-value=7.1e-07  Score=45.06  Aligned_cols=31  Identities=23%  Similarity=0.457  Sum_probs=27.7

Q ss_pred             CcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCe
Q psy11761         98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY  142 (198)
Q Consensus        98 k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~  142 (198)
                      +||.|+.|++.|..             .+.|..|++.|+ ++++|
T Consensus         1 kp~~C~~C~k~f~~-------------~~~L~~H~~~H~-~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMR-------------SDALSKHIKTAF-IVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHH-------------HHTTSSSTTSSS-SSSSC
T ss_pred             CCCCCCCCCcccCC-------------HHHHHHHHHHHc-cCCCC
Confidence            57999999999998             899999999988 77776

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.38  E-value=3.8e-07  Score=43.57  Aligned_cols=26  Identities=38%  Similarity=0.802  Sum_probs=23.5

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      +||.|+.||+.|.+.+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999998763

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2e-06  Score=44.39  Aligned_cols=34  Identities=24%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      .+.++++|.|+.|++.|.....|..|+++|.+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4567788999999999999999999998888753

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.04  E-value=7.8e-07  Score=49.27  Aligned_cols=40  Identities=23%  Similarity=0.467  Sum_probs=34.4

Q ss_pred             HhhcccCCCCCCCccCc--cchhcccCchhHHHhhhhcCCCC
Q psy11761         59 LLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        59 l~~H~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      +..|...|.++++|.|+  .|++.|.....|..|+++|++++
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            44556678999999995  79999999999999999998864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.02  E-value=1.9e-06  Score=47.91  Aligned_cols=35  Identities=29%  Similarity=0.581  Sum_probs=28.0

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhh-hcCCCCc
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSGIRP   99 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~   99 (198)
                      +|+++++|.|.+|++.|.....|..|++ +|.++.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            4778899999999999999999999998 8887653

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.97  E-value=2.5e-06  Score=44.54  Aligned_cols=26  Identities=31%  Similarity=0.720  Sum_probs=21.0

Q ss_pred             CCCCCCccCccchhcccCchhHHHhh
Q psy11761         66 QMKPRPYKCDTCEKSFTNSQNLNTHQ   91 (198)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~   91 (198)
                      +.+++||.|+.|++.|.....|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            45678888888888888888888887

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.90  E-value=4.8e-06  Score=40.42  Aligned_cols=27  Identities=30%  Similarity=0.539  Sum_probs=24.5

Q ss_pred             CCeeCC--cchhhhcChhHHHhhhhhhCC
Q psy11761        140 KPYQCD--RCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       140 ~~~~C~--~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ++|.|+  .|++.|...+.|..|+++|.+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            479999  999999999999999998864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.89  E-value=5.6e-06  Score=40.22  Aligned_cols=28  Identities=32%  Similarity=0.674  Sum_probs=18.8

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            3566777777777777777777766654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.87  E-value=6e-06  Score=40.31  Aligned_cols=28  Identities=32%  Similarity=0.710  Sum_probs=18.3

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      ++|.|+.|++.|.....|..|+++|.++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4566666666666666666666666654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.86  E-value=8.1e-06  Score=39.54  Aligned_cols=28  Identities=25%  Similarity=0.702  Sum_probs=21.3

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            3677888888888877888888777765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.84  E-value=1.1e-05  Score=39.32  Aligned_cols=29  Identities=31%  Similarity=0.555  Sum_probs=22.5

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      ++|.|+.|++.|.....|..|+++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            36788888888888888888888877664

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.83  E-value=6.8e-06  Score=42.74  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=28.6

Q ss_pred             CCCCCCCccCcc--chhcccCchhHHHhhhhcCCCC
Q psy11761         65 PQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        65 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      .|+++++|.|..  |++.|.....|..|+++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            367788999984  9999999999999999988763

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.82  E-value=1.6e-05  Score=39.64  Aligned_cols=28  Identities=39%  Similarity=0.872  Sum_probs=22.0

Q ss_pred             CCccCc--cchhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCD--TCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +||.|+  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            577887  7888888888888888887765

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.79  E-value=1.3e-05  Score=39.71  Aligned_cols=27  Identities=41%  Similarity=0.851  Sum_probs=16.9

Q ss_pred             CccCc--cchhcccCchhHHHhhhhcCCC
Q psy11761         71 PYKCD--TCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        71 ~~~C~--~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      ||.|+  .|++.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            56665  6666666666666666666654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.76  E-value=1.1e-05  Score=38.90  Aligned_cols=28  Identities=36%  Similarity=0.641  Sum_probs=21.4

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4677888888888888888888777665

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.93  E-value=4.1e-06  Score=40.81  Aligned_cols=26  Identities=38%  Similarity=0.773  Sum_probs=14.3

Q ss_pred             CccCccchhcccCchhHHHhhhhcCC
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (198)
                      ||.|+.|++.|.....|..|+++|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            45555555555555555555555544

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.74  E-value=8.2e-06  Score=39.49  Aligned_cols=28  Identities=54%  Similarity=0.867  Sum_probs=20.2

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      ++|.|+.|++.|.....|..|+++|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            3667777777777777777777777654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.73  E-value=1.9e-05  Score=47.05  Aligned_cols=42  Identities=21%  Similarity=0.345  Sum_probs=34.4

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCc
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD  106 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~  106 (198)
                      ..+.+++||.|..|++.|.....|..|+++|+++. ..+.+++
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            34677899999999999999999999999999864 4555544

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.71  E-value=1.4e-05  Score=38.42  Aligned_cols=26  Identities=38%  Similarity=0.926  Sum_probs=14.3

Q ss_pred             CCccCccchhcccCchhHHHhhhhcC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      ++|.|+.|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            35555555555555555555555543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.86  E-value=5.7e-06  Score=40.49  Aligned_cols=28  Identities=36%  Similarity=0.845  Sum_probs=15.9

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +||.|+.|++.|.....|..|+++|.++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            3555666666665555555565555543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.68  E-value=2.5e-05  Score=38.07  Aligned_cols=27  Identities=44%  Similarity=0.806  Sum_probs=15.4

Q ss_pred             CccCccchhcccCchhHHHh-hhhcCCC
Q psy11761         71 PYKCDTCEKSFTNSQNLNTH-QLIHSGI   97 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H-~~~h~~~   97 (198)
                      ||.|+.|++.|.....|..| +++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            45566666666655566666 4555543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.67  E-value=2.2e-05  Score=37.31  Aligned_cols=24  Identities=46%  Similarity=0.966  Sum_probs=12.2

Q ss_pred             ccCccchhcccCchhHHHhhhhcC
Q psy11761         72 YKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      |.|+.|++.|.....|..|+++|.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            445555555555555555555444

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.65  E-value=1.8e-05  Score=37.70  Aligned_cols=25  Identities=20%  Similarity=0.611  Sum_probs=16.6

Q ss_pred             CCccCccchhcccCchhHHHhhhhc
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h   94 (198)
                      +||.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4666666666666666666666655

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.62  E-value=1.6e-05  Score=38.02  Aligned_cols=25  Identities=24%  Similarity=0.615  Sum_probs=13.2

Q ss_pred             CCccCccchhcccCchhHHHhhhhc
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h   94 (198)
                      +||.|+.|++.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3455555555555555555555444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.74  E-value=9.3e-06  Score=38.42  Aligned_cols=25  Identities=40%  Similarity=0.834  Sum_probs=22.0

Q ss_pred             CcccCCcCchhhhcccCCCcccCCCcCccccccccccc
Q psy11761         98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (198)
Q Consensus        98 k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (198)
                      +||.|+.|++.|..             .+.|..|++.|
T Consensus         1 kp~~C~~C~k~f~~-------------~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQ-------------SSQLANHIRHH   25 (26)
Confidence            57999999999998             88888998765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.18  E-value=0.00012  Score=35.08  Aligned_cols=25  Identities=40%  Similarity=0.914  Sum_probs=14.0

Q ss_pred             CccCc--cchhcccCchhHHHhhhhcC
Q psy11761         71 PYKCD--TCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        71 ~~~C~--~C~~~f~~~~~l~~H~~~h~   95 (198)
                      +|.|.  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45555  55555555555555555554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.39  E-value=0.00051  Score=48.73  Aligned_cols=77  Identities=18%  Similarity=0.329  Sum_probs=49.8

Q ss_pred             cchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChh
Q psy11761         76 TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRM  155 (198)
Q Consensus        76 ~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~  155 (198)
                      .|+..+. ...+..|. ..-...+..|+.|+..+.              ...|..|....- ..+...|+.|+..+... 
T Consensus        89 GC~~~~~-~~~l~~H~-~~C~~~~v~C~~C~~~~~--------------r~~l~~H~~~~C-~~r~~~C~~C~~~~~~~-  150 (170)
T 3hcs_A           89 GCLHKME-LRHLEDHQ-AHCEFALMDCPQCQRPFQ--------------KFHINIHILKDC-PRRQVSCDNCAASMAFE-  150 (170)
T ss_dssp             TCCCEEE-GGGHHHHH-TTCTTSEEECTTTCCEEE--------------GGGHHHHHHHTC-TTCEEECTTTCCEEEGG-
T ss_pred             CCCceec-HhHHHHHH-hcCCceeeECCCCChHHH--------------HHHHHHHhhhhC-CCCCeECCCCCCccCHH-
Confidence            4554433 34566665 344556678888888775              567788875444 46777898998888555 


Q ss_pred             HHHhhhhhhCCCCCC
Q psy11761        156 NLISHHCHKHKQSCL  170 (198)
Q Consensus       156 ~L~~H~~~~~~~~~~  170 (198)
                      .|..|..++.|+.++
T Consensus       151 ~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          151 DKEIHDQNCPLALEH  165 (170)
T ss_dssp             GHHHHHTTCCC----
T ss_pred             HHHhHHHhCcChhhh
Confidence            788888888776654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.00098  Score=39.26  Aligned_cols=49  Identities=20%  Similarity=0.402  Sum_probs=37.7

Q ss_pred             cCchhhhcccCCCcccCCCcCccccccccc-ccccCC-----CCeeCC--cchhhhcChhHHHhhhhhhC
Q psy11761        104 TCDKSFVNQINPTSTHTPTYTKSNLAQHSC-MNSHFP-----KPYQCD--RCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       104 ~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~-~~~~~~-----~~~~C~--~C~k~f~~~~~L~~H~~~~~  165 (198)
                      .|++.|.+             ...|..|+. .|..+.     .+|.|.  .|++.+.....|..|+++.|
T Consensus         8 ~C~~~f~~-------------~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            8 ECPESASS-------------LFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TCCCCCSS-------------HHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCcCCC-------------HHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            38889988             888998984 554222     279997  59999888889999988764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.31  E-value=0.0018  Score=43.22  Aligned_cols=51  Identities=18%  Similarity=0.082  Sum_probs=36.9

Q ss_pred             ccccccCCCCeeCCcchhhhcChhHHHhhhhhh--------CCCCCCCcccccccCCCcc
Q psy11761        132 SCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHK--------HKQSCLPFISRLFGFDDGD  183 (198)
Q Consensus       132 ~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~--------~~~~~~~~~~~~~~~~~~~  183 (198)
                      ...++ |+++|.|..|++.|.+.+.|..|++..        -.++||.-.-..-....+.
T Consensus        42 ded~t-GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~~p~Tq~eAe~aag~g~  100 (124)
T 1zr9_A           42 DPDLP-GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGS  100 (124)
T ss_dssp             CSSSG-GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSCSSCTTTSSCSCCCCC
T ss_pred             cccCC-CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhccCCCcHHHHHHhccCCC
Confidence            33455 789999999999999999999998644        1456666555555554443

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0024  Score=37.55  Aligned_cols=48  Identities=15%  Similarity=0.283  Sum_probs=38.5

Q ss_pred             CccccccCChhHHhhccc-CCCCCC------CccCc--cchhcccCchhHHHhhhhc
Q psy11761         47 EYCHKVFDQQSSLLSHNC-PQMKPR------PYKCD--TCEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        47 ~~C~~~f~~~~~l~~H~~-~h~~~~------~~~C~--~C~~~f~~~~~l~~H~~~h   94 (198)
                      ..|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|+++.
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            458999999999999974 676654      78886  7988888888899998764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.61  E-value=0.0076  Score=32.59  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=25.8

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ..+|.|+.|+..|.....|+.||+.-.++.
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             CCceeCCcccccccchHHHHhhhhhcCcch
Confidence            368999999999999999999998665554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.12  E-value=0.0041  Score=41.89  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=22.6

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhh
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      +.+.|.|.+|+++|.+...|..|..
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            5678999999999999999999975

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.24  E-value=0.0082  Score=40.02  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=28.1

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhc
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   94 (198)
                      +..-++|.++|.|..|++.|.+...|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            445678899999999999999999999998754

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.20  E-value=0.022  Score=40.08  Aligned_cols=80  Identities=21%  Similarity=0.391  Sum_probs=53.8

Q ss_pred             eec--CccccccCChhHHhhcccCCCCCCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCC
Q psy11761         44 HKC--EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTP  121 (198)
Q Consensus        44 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~  121 (198)
                      ..|  .-|+..+. ...+..|... =.-.+..|+.|+..+ ....+..|.....+.+...|+.|+..+.           
T Consensus        83 v~C~n~GC~~~~~-~~~l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-----------  148 (170)
T 3hcs_A           83 VKCPNEGCLHKME-LRHLEDHQAH-CEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-----------  148 (170)
T ss_dssp             EECCSTTCCCEEE-GGGHHHHHTT-CTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-----------
T ss_pred             cCCCCCCCCceec-HhHHHHHHhc-CCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-----------
Confidence            345  34554433 3445666522 123456788998877 4567899998888888999999999887           


Q ss_pred             CcCcccccccccccccCCCC
Q psy11761        122 TYTKSNLAQHSCMNSHFPKP  141 (198)
Q Consensus       122 ~~~~~~l~~H~~~~~~~~~~  141 (198)
                         ...+..|...+. |+.+
T Consensus       149 ---~~~l~~H~~~~~-~~~~  164 (170)
T 3hcs_A          149 ---FEDKEIHDQNCP-LALE  164 (170)
T ss_dssp             ---GGGHHHHHTTCC-C---
T ss_pred             ---HHHHHhHHHhCc-Chhh
Confidence               677888887776 4443

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=93.08  E-value=0.07  Score=35.76  Aligned_cols=25  Identities=20%  Similarity=0.513  Sum_probs=13.9

Q ss_pred             CCCCccCccchhcccCchhHHHhhh
Q psy11761         68 KPRPYKCDTCEKSFTNSQNLNTHQL   92 (198)
Q Consensus        68 ~~~~~~C~~C~~~f~~~~~l~~H~~   92 (198)
                      +...|.|..|+..|.+...+..|..
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            3445556666666665555555543

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=92.93  E-value=0.051  Score=32.69  Aligned_cols=57  Identities=18%  Similarity=0.359  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCcccC-CcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhh
Q psy11761         88 NTHQLIHSGIRPFKC-TTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH  161 (198)
Q Consensus        88 ~~H~~~h~~~k~~~C-~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~  161 (198)
                      ..|. ..-...+..| ..|+..+.              +..|..|....- ..+...|..|+..+.. ..|..|.
T Consensus         6 ~~H~-~~C~~~~v~C~~~C~~~v~--------------r~~l~~H~~~~C-~~r~v~C~~C~~~~~~-~~l~~H~   63 (76)
T 2yuc_A            6 SGHL-NTCSFNVIPCPNRCPMKLS--------------RRDLPAHLQHDC-PKRRLKCEFCGCDFSG-EAYESHE   63 (76)
T ss_dssp             SCCC-CCCCCSCCBCTTCCSCBCC--------------SSSSTTTTTTSC-TTSCCCCSSSCCCCCH-HHHHHTT
T ss_pred             HHHH-HHCCCcccCCCccccHHhh--------------HhHHHhhCHhhC-CCcceECCCCCCccCH-HHHHHHH
Confidence            3444 3444556778 46887775              567778876433 3577889999988854 4777776

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.38  E-value=0.13  Score=25.91  Aligned_cols=28  Identities=21%  Similarity=0.477  Sum_probs=24.2

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      ..|.|++|-+.|.+...|..|....|.+
T Consensus         4 EGFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            4 EGFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             cccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            3599999999999999999998776643

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=91.03  E-value=0.1  Score=33.43  Aligned_cols=28  Identities=14%  Similarity=0.422  Sum_probs=17.8

Q ss_pred             CccccCcccchhhcccCCCceecCccccc
Q psy11761         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKV   52 (198)
Q Consensus        24 ~~~~C~~C~~~f~~~~~~~~~~C~~C~~~   52 (198)
                      .||.|..||..| ......|-+|+.|+..
T Consensus        66 ~p~~C~~CG~~F-~~~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           66 KPAQCRKCGFVF-KAEINIPSRCPKCKSE   93 (105)
T ss_dssp             CCCBBTTTCCBC-CCCSSCCSSCSSSCCC
T ss_pred             ECcChhhCcCee-cccCCCCCCCcCCCCC
Confidence            467777777777 3333346777777654

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=90.47  E-value=0.063  Score=33.09  Aligned_cols=32  Identities=22%  Similarity=0.566  Sum_probs=24.4

Q ss_pred             CccccCcccchhhcccCCCceecCccccccCC
Q psy11761         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (198)
Q Consensus        24 ~~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~   55 (198)
                      ..|.|+.||+..........|.|..|+..|.-
T Consensus        26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ag   57 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG   57 (83)
T ss_dssp             SCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred             ccCcCCCCCCcceeccCCCeEECCCCCCEecC
Confidence            37999999985544455668999999987644

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=90.01  E-value=0.18  Score=29.98  Aligned_cols=31  Identities=26%  Similarity=0.663  Sum_probs=25.3

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCC
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~   55 (198)
                      .|.|+.||+.--.......|.|..|++.|.-
T Consensus        26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             CBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred             CccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence            7999999987655666778999999988754

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.77  E-value=0.29  Score=26.42  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=13.4

Q ss_pred             CCccCccchhcccCchhHHHhhh
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQL   92 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~   92 (198)
                      .+|.|+.|+..|.....|..||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            34556666666665555666655

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=87.22  E-value=0.074  Score=32.19  Aligned_cols=11  Identities=27%  Similarity=0.594  Sum_probs=6.0

Q ss_pred             ccccCcccchh
Q psy11761         25 AYKCHQCQRLI   35 (198)
Q Consensus        25 ~~~C~~C~~~f   35 (198)
                      .-+||.||...
T Consensus         8 ~~~~PlCG~~L   18 (95)
T 2k5c_A            8 MAKCPICGSPL   18 (95)
T ss_dssp             CEECSSSCCEE
T ss_pred             cccCCcCCCcc
Confidence            34566666543

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=86.19  E-value=0.22  Score=30.52  Aligned_cols=31  Identities=23%  Similarity=0.582  Sum_probs=24.6

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCC
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~   55 (198)
                      .|.|+.||+.--.......|.|..|++.|.-
T Consensus        35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AG   65 (83)
T 3j21_i           35 KHTCPVCGRKAVKRISTGIWQCQKCGATFAG   65 (83)
T ss_dssp             CBCCSSSCSSCEEEEETTEEEETTTCCEEEC
T ss_pred             ccCCCCCCCceeEecCcCeEEcCCCCCEEeC
Confidence            7999999987555556678999999987743

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=85.73  E-value=0.19  Score=32.74  Aligned_cols=31  Identities=23%  Similarity=0.575  Sum_probs=20.9

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCC
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~   55 (198)
                      .|.|+.||+.-........|.|..|+..|.-
T Consensus        60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAG   90 (116)
T 3cc2_Z           60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTG   90 (116)
T ss_dssp             CEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred             CCcCCCCCCceeEecCceeEECCCCCCEEEC
Confidence            5778888874333344567888888887643

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=85.23  E-value=0.2  Score=31.01  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=23.3

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCCCCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQSCL  170 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~  170 (198)
                      +....|-+||+.|.   .|.+|+.++||.-|.
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~hgltpe   47 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHHSMTPE   47 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTTCSCHH
T ss_pred             CCceEecccchhhH---HHHHHHHHccCCCHH
Confidence            56789999999997   477999998876543

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=84.42  E-value=0.58  Score=27.84  Aligned_cols=40  Identities=23%  Similarity=0.517  Sum_probs=24.4

Q ss_pred             CCccC-ccchhcccCchhHHHhhhhcCCCCcccCCcCchhhh
Q psy11761         70 RPYKC-DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFV  110 (198)
Q Consensus        70 ~~~~C-~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~  110 (198)
                      .+-.| ..|+..+. ...|..|.....+.++..|..|+..+.
T Consensus        15 ~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~   55 (76)
T 2yuc_A           15 NVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFS   55 (76)
T ss_dssp             SCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCC
T ss_pred             cccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccC
Confidence            34455 35665544 345666666566666777877877765

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=83.84  E-value=0.25  Score=31.41  Aligned_cols=31  Identities=29%  Similarity=0.732  Sum_probs=24.8

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCC
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~   55 (198)
                      .|.|+.||+.--.......|.|..|+..|.-
T Consensus        36 ky~CpfCgk~~vKR~a~GIW~C~kCg~~~AG   66 (103)
T 4a17_Y           36 KYGCPFCGKVAVKRAAVGIWKCKPCKKIIAG   66 (103)
T ss_dssp             CEECTTTCCEEEEEEETTEEEETTTTEEEEC
T ss_pred             CCCCCCCCCceeeecCcceEEcCCCCCEEeC
Confidence            7999999987555566778999999987744

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=83.52  E-value=0.3  Score=29.19  Aligned_cols=33  Identities=21%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             CccccCcccchhhcccCCCceecCccccccCCh
Q psy11761         24 NAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQ   56 (198)
Q Consensus        24 ~~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~~   56 (198)
                      ..|.|+.||+.-........|.|..|+..|.-.
T Consensus        26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG   58 (73)
T 1ffk_W           26 KKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG   58 (73)
T ss_pred             cCccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence            479999999854444555689999999987543

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=83.38  E-value=0.56  Score=25.20  Aligned_cols=27  Identities=22%  Similarity=0.563  Sum_probs=13.5

Q ss_pred             ccccCcccchhhcccC--CCceecCcccc
Q psy11761         25 AYKCHQCQRLIFLSAN--AGVHKCEYCHK   51 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~--~~~~~C~~C~~   51 (198)
                      .|.|-.||+.|....-  +-.-+|+.||.
T Consensus         3 iY~C~rCg~~fs~~el~~lP~IrCpyCGy   31 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGY   31 (48)
T ss_dssp             --CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred             EEEeeccCCCccHHHHhhCCCcccCccCc
Confidence            3666666666655332  12345666654

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=83.38  E-value=0.13  Score=31.08  Aligned_cols=50  Identities=24%  Similarity=0.384  Sum_probs=39.1

Q ss_pred             CCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhh
Q psy11761         96 GIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHH  161 (198)
Q Consensus        96 ~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~  161 (198)
                      .-.-|.|..||..+.              +..+..|..... +-..+-|-.|++.|.. ..+..|.
T Consensus         7 ~MV~F~C~~Cgd~lK--------------K~kv~~H~~~Cr-~~~~~SCIDC~~~F~~-~~y~~Ht   56 (79)
T 1wjv_A            7 GMVFFTCNACGESVK--------------KIQVEKHVSNCR-NCECLSCIDCGKDFWG-DDYKSHV   56 (79)
T ss_dssp             CCCEEEESSSCCEEE--------------TTHHHHHHHHCT-TCCEEEETTTTEEEEG-GGTTTCC
T ss_pred             ceeEEEcCCCCCeee--------------cccchhHHhhCC-CCCcEEecccCCeeCC-CCEeCEe
Confidence            344589999999986              788999976664 4457899999999975 4677774

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=82.35  E-value=1.3  Score=22.36  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ...+.|..|+-+|.+...+..|.+.-..
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~YC~   33 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQFYCK   33 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHHTSC
T ss_pred             cCcCeeccccceehhhHHHhhhheecCC
Confidence            4678999999999999999999765443

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=81.34  E-value=0.74  Score=24.81  Aligned_cols=11  Identities=27%  Similarity=0.546  Sum_probs=5.9

Q ss_pred             cccCcccchhh
Q psy11761         26 YKCHQCQRLIF   36 (198)
Q Consensus        26 ~~C~~C~~~f~   36 (198)
                      |.|..||..+.
T Consensus         5 y~C~vCGyvyd   15 (46)
T 6rxn_A            5 YVCNVCGYEYD   15 (46)
T ss_dssp             EEETTTCCEEC
T ss_pred             EECCCCCeEEe
Confidence            45555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	7e-08
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-06
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	1e-06
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	4e-06
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	5e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	2e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-05
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	6e-05
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	8e-05
d2glia3	30	g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo	1e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	1e-04
d1a1ia1	29	g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus)	1e-04
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	2e-04
d1zfda_	32	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	2e-04
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	3e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	3e-04
d1ubdc3	30	g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger	8e-04
d1ubdc4	28	g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger	0.002

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (107), Expect = 7e-08
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 70  RPYKCDTCEKSFTNSQNLNTH-QLIHSGIRPFKC 102
           +PY C +C K F+   +LN H + +H+  RP KC
Sbjct: 4   KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 1e-06
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
          + C+ C K F  +S    H    +  RPY C  C K F    +L  H  IH
Sbjct: 4  YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 70  RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
           + Y C  C KSFT+    + H  +H G+RP+ C  C K F
Sbjct: 2   KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF 40

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (97), Expect = 1e-06
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          +PY C  C K+F+ S  L  HQ +H+G
Sbjct: 6  KPYGCVECGKAFSRSSILVQHQRVHTG 32

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (94), Expect = 4e-06
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          +P++C  C ++F+ S +L TH   H+G
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTG 28

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 39.9 bits (94), Expect = 5e-06
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          R + C+ C ++F   ++L  H   H+ 
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTN 27

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 72  YKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKC 102
           + C    C KSF   ++L  H  +HS  R + C
Sbjct: 2   FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 4e-05
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          +PY C  C+K+F   Q L+ H   +  
Sbjct: 7  KPYACSHCDKTFRQKQLLDMHFKRYHD 33

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 6e-05
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          + + C  C K F  S +L+ H   H  
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQN 27

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (84), Expect = 8e-05
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
          +PYKC  C K+F+ +  L  HQ IH+
Sbjct: 1  KPYKCLECGKAFSQNSGLINHQRIHT 26

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
          +P+KC    C KS++  +NL TH   H+G
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 1e-04
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          RP+ C  C  +FT   N   H  +H+ 
Sbjct: 6  RPFVCRICLSAFTTKANCARHLKVHTD 32

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
          RPY C   +C++ F+ S +L  H  IH+G
Sbjct: 1  RPYACPVESCDRRFSRSADLTRHIRIHTG 29

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 70 RPYKCDT--CEKSFTNSQNLNTHQLIHSG 96
          RP+ C    C K FT S  L  H+  H+G
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 32

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
          RPY CD   C+K+F  + +L  H+  H  
Sbjct: 2  RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          +PY+C  C   FT S  +  H L    
Sbjct: 7  KPYECYICHARFTQSGTMKMHILQKHT 33

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
          +P++C  C++SF+ S +L  H+  H  +
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHMLV 37

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
          R YKCD C KSF++S +L+ H+  H+G
Sbjct: 11 RRYKCDECGKSFSHSSDLSKHRRTHTG 37

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 30

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSG 96
          +P++C    C K F+   NL TH  IH+G
Sbjct: 1  KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.002
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHS 95
          RPY C    C K F  S NL +H L H+
Sbjct: 1  RPYVCPFDGCNKKFAQSTNLKSHILTHA 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.56
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.47
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.24
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.13
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.09
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.09
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.08
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.05
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.04
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.04
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.02
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.0
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.0
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.9
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.87
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.87
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.8
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.78
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.77
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.71
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.71
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.7
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.68
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.61
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.61
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.57
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.56
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.55
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.51
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.39
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.36
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.31
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.23
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.19
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.18
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.06
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.01
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.95
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.94
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.85
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.8
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.78
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.75
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.62
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.61
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.54
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.46
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.45
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.35
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.35
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.28
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.19
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.18
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.05
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.02
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.99
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.97
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.87
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.83
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.82
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.74
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.73
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.67
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.64
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.48
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.38
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.19
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.16
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.13
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.93
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.69
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.41
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.39
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.2
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.18
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.99
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.93
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.81
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.65
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.49
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.16
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.96
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.8
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.66
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.65
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.41
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.73
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	92.5
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.43
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	91.94
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.89
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	90.8
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.34
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	90.13
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.06
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.91
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	89.84
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.49
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	89.21
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	88.98
d1y0jb1	36	U-shaped transcription factor, different fingers {	88.52
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	85.85
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.68
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	83.65
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	82.87
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	80.99

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-16  Score=90.20  Aligned_cols=53  Identities=30%  Similarity=0.589  Sum_probs=50.1

Q ss_pred             CCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhhhcChhHHHhhhhhh
Q psy11761         97 IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus        97 ~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~  164 (198)
                      ||||.|. ||+.|..             ...|..|+++|+ +++||.|++||+.|.+.+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~-------------~~~l~~H~~~Ht-~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTH-------------KSQRDRHMSMHL-GLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESS-------------HHHHHHHHHHHS-CCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECC-------------HHHhHHHhhccc-cccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            6899995 9999999             999999999998 899999999999999999999999876

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.2e-15  Score=84.65  Aligned_cols=53  Identities=36%  Similarity=0.768  Sum_probs=38.1

Q ss_pred             CCCccCccchhcccCchhHHHhhhhcCCCCcccCCcCchhhhcccCCCcccCCCcCccccccccccc
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN  135 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~  135 (198)
                      ++||.| .||+.|.....|..|+++|++++||.|..||+.|..             .+.|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~-------------~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKM-------------KHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESS-------------SHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecC-------------HHHHHHHHhcC
Confidence            467777 377777777777777777777777777777777776             67777776654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.6e-12  Score=67.91  Aligned_cols=37  Identities=19%  Similarity=0.444  Sum_probs=34.9

Q ss_pred             ccccccccCCCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       130 ~H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +|+++|+ +++||+|+.|||+|.+.+.|..|+++|+||
T Consensus         2 rH~~~Ht-~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQR-ERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCC-CSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccC-CCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            5888888 899999999999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-11  Score=64.46  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhh-hhCCCCCCCcc
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHC-HKHKQSCLPFI  173 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~-~~~~~~~~~~~  173 (198)
                      .++||+|+.||+.|...+.|..|++ +|.+++||.|+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            4799999999999999999999986 79999977654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.4e-11  Score=61.81  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=30.0

Q ss_pred             cccCCCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        135 NSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       135 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      |+ +++||+|..||++|.+.+.|..|+++|+||
T Consensus         2 HT-gekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HS-GEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TT-TCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cC-CCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            45 899999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-11  Score=62.47  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=30.9

Q ss_pred             cccccCCCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        133 CMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       133 ~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      ++|+ |++||+|.+||++|.+.+.|..|+++|+++
T Consensus         1 R~HT-gekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHT-GEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCC-CCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCC-CCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            3566 899999999999999999999999999865

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.2e-11  Score=62.89  Aligned_cols=37  Identities=41%  Similarity=0.748  Sum_probs=35.6

Q ss_pred             hcccCCCCCCCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         61 SHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        61 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +|+.+|++++||.|++|++.|....+|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=3e-11  Score=62.58  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             cccccccCCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        131 HSCMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       131 H~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      |.+.|+ +++||+|++|++.|.+++.|..|+++|.+
T Consensus         2 h~R~HT-geKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGST-GIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTC-CSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccC-CccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            678888 89999999999999999999999999864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.05  E-value=3.8e-11  Score=58.46  Aligned_cols=29  Identities=17%  Similarity=0.518  Sum_probs=27.7

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +||+|++|++.|.+.+.|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.3e-11  Score=61.07  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=30.8

Q ss_pred             cccccCCCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        133 CMNSHFPKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       133 ~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      ++|+ |++||+|++|++.|+++++|..|++.+|++.
T Consensus         1 R~HT-gekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           1 RTHS-GEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCS-CCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CccC-CCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            3566 8999999999999999999999998877653

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=3.7e-11  Score=65.48  Aligned_cols=42  Identities=19%  Similarity=0.334  Sum_probs=37.4

Q ss_pred             cccccccccccccCCCCeeCCc--chhhhcChhHHHhhhhhhCCCC
Q psy11761        125 KSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       125 ~~~l~~H~~~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      .+.+.+|+. +. +++||+|++  |++.|...+.|..|+++|+|++
T Consensus         4 ~~~l~~h~~-h~-gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           4 RGSIDKYVK-EM-PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CSSGGGSCE-EE-TTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cchhcchhh-cc-CCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            566777885 66 899999988  9999999999999999999985

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.1e-11  Score=57.59  Aligned_cols=29  Identities=21%  Similarity=0.430  Sum_probs=27.7

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +||.|++||+.|.+++.|..|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.7e-11  Score=61.61  Aligned_cols=36  Identities=39%  Similarity=0.905  Sum_probs=26.4

Q ss_pred             CCCccCccchhcccCchhHHHhhh-hcCCCCcccCCc
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQL-IHSGIRPFKCTT  104 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~  104 (198)
                      ++||.|.+|++.|.....|..|++ +|++++||.|.+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            567777777777777777777764 577777777753

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=5.6e-11  Score=57.16  Aligned_cols=28  Identities=29%  Similarity=0.551  Sum_probs=26.6

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      +|||+|++|++.|.+++.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999976

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.1e-10  Score=59.29  Aligned_cols=30  Identities=20%  Similarity=0.373  Sum_probs=28.4

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      |++||+|++|++.|++++.|..|+++|...
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCccccCCCCCCcccChHHHHHHccccCCc
Confidence            899999999999999999999999999764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.8e-10  Score=56.90  Aligned_cols=33  Identities=36%  Similarity=0.680  Sum_probs=30.9

Q ss_pred             CCCCCCCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        65 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +|++++||.|.+|++.|.....|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            588999999999999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.7e-10  Score=53.34  Aligned_cols=26  Identities=35%  Similarity=0.752  Sum_probs=24.5

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      |||+|..|||+|.+.+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999884

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=7.4e-10  Score=57.16  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=33.0

Q ss_pred             cccCCCCCCCccCccchhcccCchhHHHhhhhcCC
Q psy11761         62 HNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        62 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (198)
                      |.++|++++||.|++|++.|.....|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            78899999999999999999999999999999874

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-09  Score=56.03  Aligned_cols=34  Identities=26%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      ++|+|++||.|.+|++.|.....|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4799999999999999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.2e-09  Score=55.68  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             CeeCCc--chhhhcChhHHHhhhhhhCCCCCCCcc
Q psy11761        141 PYQCDR--CSQFFGDRMNLISHHCHKHKQSCLPFI  173 (198)
Q Consensus       141 ~~~C~~--C~k~f~~~~~L~~H~~~~~~~~~~~~~  173 (198)
                      .|.|++  ||+.|.+++.|.+|+++|.|++||.|.
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CeECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            478887  999999999999999999999988764

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.4e-09  Score=52.95  Aligned_cols=28  Identities=25%  Similarity=0.468  Sum_probs=26.6

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhhCCC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +||+|++  |+++|.+.+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899999  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-09  Score=52.87  Aligned_cols=28  Identities=32%  Similarity=0.577  Sum_probs=26.4

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhhCCC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +||+|++  ||++|++.+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899988  999999999999999999886

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3e-09  Score=52.32  Aligned_cols=29  Identities=21%  Similarity=0.516  Sum_probs=26.7

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +||.|++  |++.|++.+.|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            6899964  9999999999999999999985

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.71  E-value=3.1e-09  Score=51.49  Aligned_cols=29  Identities=24%  Similarity=0.709  Sum_probs=21.0

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      +||.|++|++.|.....|..|+++|+|+|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            46777777777777777777777777764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=3.4e-09  Score=53.60  Aligned_cols=32  Identities=28%  Similarity=0.598  Sum_probs=28.8

Q ss_pred             CCCCCCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        66 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      |+|++||.|++|++.|....+|..|+++|++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            67899999999999999999999999999864

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.5e-09  Score=50.48  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=24.1

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCCCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      +||.|++|++.|.....|..|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57888888888888888888888888875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=9.3e-09  Score=52.45  Aligned_cols=33  Identities=27%  Similarity=0.558  Sum_probs=29.0

Q ss_pred             cCCCCCCCccCccchhcccCchhHHHhhhhcCC
Q psy11761         64 CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        64 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (198)
                      ++|+|++||.|+.|++.|....+|..|++.+++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            479999999999999999999999999865544

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=4.2e-09  Score=50.42  Aligned_cols=28  Identities=36%  Similarity=0.903  Sum_probs=23.1

Q ss_pred             CCCccCccchhcccCchhHHHhhhhcCC
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (198)
                      ++||.|++|++.|.....|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5788888888888888888888888865

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=4.9e-09  Score=56.84  Aligned_cols=41  Identities=24%  Similarity=0.402  Sum_probs=36.2

Q ss_pred             hHHhhcccCCCCCCCccCcc--chhcccCchhHHHhhhhcCCCC
Q psy11761         57 SSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        57 ~~l~~H~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      ..|..|+. |.+++||.|+.  |++.|.....|..|+++|+|++
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34666774 99999999987  9999999999999999999975

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=8.1e-09  Score=52.58  Aligned_cols=32  Identities=34%  Similarity=0.788  Sum_probs=24.4

Q ss_pred             ccCcc--chhcccCchhHHHhhhhcCCCCcccCC
Q psy11761         72 YKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT  103 (198)
Q Consensus        72 ~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~  103 (198)
                      |.|+.  |++.|.....|..|+++|+|++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            55654  788888888888888888888888775

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=1.9e-08  Score=49.62  Aligned_cols=29  Identities=31%  Similarity=0.760  Sum_probs=26.5

Q ss_pred             CCCeeCCc--chhhhcChhHHHhhhhhhCCC
Q psy11761        139 PKPYQCDR--CSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       139 ~~~~~C~~--C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      ++||.|++  |++.|++.+.|.+|+++|..+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            58999998  999999999999999999753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=1.4e-08  Score=48.87  Aligned_cols=27  Identities=26%  Similarity=0.583  Sum_probs=25.2

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhhCC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~~~  166 (198)
                      +||+|++  |++.|.+.+.|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899988  99999999999999999975

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.2e-08  Score=47.06  Aligned_cols=26  Identities=35%  Similarity=0.668  Sum_probs=24.2

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhhC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~~  165 (198)
                      +||.|++  |||+|++.+.|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999884

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.6e-08  Score=45.95  Aligned_cols=25  Identities=48%  Similarity=0.967  Sum_probs=15.5

Q ss_pred             CCccCccchhcccCchhHHHhhhhc
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h   94 (198)
                      +||.|.+||+.|.....|..|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            4566666666666666666666655

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-07  Score=45.63  Aligned_cols=28  Identities=43%  Similarity=0.801  Sum_probs=21.7

Q ss_pred             CCccCcc--chhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +||.|+.  |++.|.....|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4777877  888888888888888888764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.1e-07  Score=44.89  Aligned_cols=29  Identities=41%  Similarity=0.878  Sum_probs=20.3

Q ss_pred             CCccCc--cchhcccCchhHHHhhhhcCCCC
Q psy11761         70 RPYKCD--TCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        70 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      +||.|+  .|++.|.....|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            467774  47777777777777777777764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.2e-07  Score=42.04  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=25.0

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      ++||.|++||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999998874

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.8e-07  Score=45.31  Aligned_cols=28  Identities=43%  Similarity=0.839  Sum_probs=21.7

Q ss_pred             CCccCcc--chhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +||.|+.  |++.|.....|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5777866  888888888888888888764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4e-07  Score=40.36  Aligned_cols=26  Identities=23%  Similarity=0.553  Sum_probs=23.8

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      |.+|+.|++.|+.+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56899999999999999999998875

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.8e-07  Score=40.99  Aligned_cols=27  Identities=33%  Similarity=0.634  Sum_probs=24.8

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhhCC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~~~  166 (198)
                      +||.|.+  |+++++..++|++|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899988  99999999999999998875

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.4e-06  Score=41.42  Aligned_cols=32  Identities=22%  Similarity=0.437  Sum_probs=29.3

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQSCLP  171 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~~~  171 (198)
                      +...|+.|||.|..-..|.+|...|.+++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            56789999999999999999999999999873

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.8e-06  Score=39.03  Aligned_cols=27  Identities=19%  Similarity=0.361  Sum_probs=24.6

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      ...|..|||.|...+.|.+|+.+|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            358999999999999999999999875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=3.2e-06  Score=41.35  Aligned_cols=29  Identities=38%  Similarity=0.843  Sum_probs=23.2

Q ss_pred             CCCccCcc--chhcccCchhHHHhhhhcCCC
Q psy11761         69 PRPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        69 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      ++||.|+.  |++.|.....|..|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            47888877  888888888888888888753

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.8e-06  Score=41.02  Aligned_cols=30  Identities=40%  Similarity=0.847  Sum_probs=18.6

Q ss_pred             CccCccchhcccCchhHHHhhhhcCCCCcc
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPF  100 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~  100 (198)
                      ...|..||+.|.....|.+|..+|+++|||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            344666666666666666666666666665

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.1e-06  Score=39.26  Aligned_cols=29  Identities=24%  Similarity=0.468  Sum_probs=26.5

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      ++||.|++|+..|..+..+..|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999998764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=1.5e-06  Score=41.60  Aligned_cols=27  Identities=44%  Similarity=1.042  Sum_probs=17.9

Q ss_pred             CCccCcc--chhcccCchhHHHhhhhcCC
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   96 (198)
                      +||.|+.  |++.|.....|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4666655  77777777777777766654

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.3e-06  Score=39.47  Aligned_cols=26  Identities=50%  Similarity=0.998  Sum_probs=20.4

Q ss_pred             CCccCcc--chhcccCchhHHHhhhhcC
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~   95 (198)
                      +||.|+.  |++.|....+|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5778876  8888888888888888774

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=6.9e-06  Score=37.23  Aligned_cols=29  Identities=17%  Similarity=0.415  Sum_probs=26.8

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      ++||+|..|...-.+.++|..|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            58999999999999999999999999874

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=6.6e-06  Score=36.34  Aligned_cols=24  Identities=38%  Similarity=0.696  Sum_probs=12.7

Q ss_pred             eecCccccccCChhHHhhcccCCC
Q psy11761         44 HKCEYCHKVFDQQSSLLSHNCPQM   67 (198)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~h~   67 (198)
                      ++|..|++.|.....|..|++.|+
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CccchhhhHhcchhHHHHHhhccC
Confidence            445555555555555555555544

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.3e-05  Score=40.24  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhh
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      |-+||+|.+|+|.|.++.++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            6799999999999999999999964

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.2e-05  Score=36.23  Aligned_cols=26  Identities=31%  Similarity=0.499  Sum_probs=21.3

Q ss_pred             eecCccccccCChhHHhhcccCCCCC
Q psy11761         44 HKCEYCHKVFDQQSSLLSHNCPQMKP   69 (198)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~h~~~   69 (198)
                      +.|.+||+.|...+.|.+|+.+|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            56888888888888888888888764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.54  E-value=2.3e-05  Score=34.18  Aligned_cols=24  Identities=25%  Similarity=0.594  Sum_probs=22.2

Q ss_pred             eeCCcchhhhcChhHHHhhhhhhC
Q psy11761        142 YQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      |+|..|.++|..++.|.+|+++|-
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999874

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.46  E-value=2.9e-05  Score=36.24  Aligned_cols=26  Identities=38%  Similarity=0.714  Sum_probs=23.5

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ||.|.+|++.|+.+.-|.+|+...|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            79999999999999999999876664

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=2.8e-05  Score=35.15  Aligned_cols=27  Identities=41%  Similarity=0.806  Sum_probs=15.9

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (198)
                      +||+|..|.+...+...|..|.++|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            456666666555555556666665554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=3.9e-05  Score=34.97  Aligned_cols=27  Identities=33%  Similarity=0.811  Sum_probs=19.6

Q ss_pred             CCCccCccchhcccCchhHHHhhhhcC
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      ++||.|++||+.|........|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            467777777777777777777777664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.7e-05  Score=34.31  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=25.5

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      .|.|+.||......+-|.+|.+.|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            3789999999999999999999999864

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=5.2e-05  Score=35.04  Aligned_cols=29  Identities=28%  Similarity=0.681  Sum_probs=22.1

Q ss_pred             CCCccCccchhcccCchhHHHhhhhcCCC
Q psy11761         69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        69 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      ++||.|++|...|..+..+.-|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            46788888888888877777777777664

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=5.9e-05  Score=34.37  Aligned_cols=28  Identities=29%  Similarity=0.498  Sum_probs=25.5

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +||+|..|.....+.++|..|++..|++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5899999999999999999999887765

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00011  Score=32.56  Aligned_cols=26  Identities=19%  Similarity=0.430  Sum_probs=24.3

Q ss_pred             eCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        143 QCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       143 ~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +|+.|.+.|-++.-|.-|.+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.18  E-value=0.00012  Score=36.33  Aligned_cols=30  Identities=23%  Similarity=0.517  Sum_probs=26.8

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      .+.|+|.+|++.|.+...|--|+..|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            468999999999999999999999997655

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00016  Score=31.41  Aligned_cols=24  Identities=42%  Similarity=0.789  Sum_probs=22.2

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhh
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~  164 (198)
                      ||+|..|...|.++..|..|+...
T Consensus         2 pykcsscsqqfmqkkdlqshmikl   25 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKL   25 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999754

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.02  E-value=0.00014  Score=33.05  Aligned_cols=28  Identities=25%  Similarity=0.575  Sum_probs=24.5

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhhCCC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +||.|..  |.|.|.+.-.|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            5788865  999999999999999999875

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00023  Score=32.43  Aligned_cols=29  Identities=38%  Similarity=0.575  Sum_probs=25.9

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      +||+|..|.......++|..|.++.|+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            68999999999999999999999887643

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.0002  Score=31.63  Aligned_cols=26  Identities=35%  Similarity=0.700  Sum_probs=21.8

Q ss_pred             cCccchhcccCchhHHHhhhhcCCCC
Q psy11761         73 KCDTCEKSFTNSQNLNTHQLIHSGIR   98 (198)
Q Consensus        73 ~C~~C~~~f~~~~~l~~H~~~h~~~k   98 (198)
                      .|+.|.+.|.++.-|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58888888888888888888888874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00033  Score=31.75  Aligned_cols=24  Identities=38%  Similarity=0.703  Sum_probs=21.9

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhh
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~  164 (198)
                      ||.|..|+..|.++.+|.+||...
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            789999999999999999999744

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00016  Score=33.63  Aligned_cols=26  Identities=31%  Similarity=0.735  Sum_probs=22.6

Q ss_pred             CCeeCCc--chhhhcChhHHHhhh-hhhC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHH-CHKH  165 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~-~~~~  165 (198)
                      +||.|+.  |.|.|++.+.-.+|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6899988  999999999999998 5654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00031  Score=31.39  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=24.1

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      +||+|..|...-...++|.+|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.74  E-value=0.00042  Score=31.29  Aligned_cols=25  Identities=28%  Similarity=0.561  Sum_probs=22.1

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhh
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~  164 (198)
                      .||+|+.  |++.|...+.|.+|-++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4889976  999999999999998776

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.73  E-value=0.00039  Score=30.19  Aligned_cols=24  Identities=29%  Similarity=0.557  Sum_probs=16.2

Q ss_pred             eecCccccccCChhHHhhcccCCC
Q psy11761         44 HKCEYCHKVFDQQSSLLSHNCPQM   67 (198)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~h~   67 (198)
                      |+|..|...|...+.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            456777777777777777776653

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00057  Score=30.92  Aligned_cols=26  Identities=23%  Similarity=0.540  Sum_probs=14.8

Q ss_pred             ccCccchhcccCchhHHHhhhhcCCC
Q psy11761         72 YKCDTCEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        72 ~~C~~C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      |.|+.|+....-..-|..|.++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            45555555555555566666665554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00056  Score=33.66  Aligned_cols=28  Identities=29%  Similarity=0.549  Sum_probs=24.7

Q ss_pred             CCCCeeC--CcchhhhcChhHHHhhhhhhC
Q psy11761        138 FPKPYQC--DRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       138 ~~~~~~C--~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      .++||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            5799999  559999999999999988774

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00069  Score=30.20  Aligned_cols=26  Identities=50%  Similarity=0.962  Sum_probs=17.9

Q ss_pred             CCccCccchhcccCchhHHHhhhhcC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      +||+|..|++.-....+|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            56677777777666677777777664

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00023  Score=35.56  Aligned_cols=26  Identities=31%  Similarity=0.905  Sum_probs=22.0

Q ss_pred             CCCCcccCCcCchhhhcccCCCcccCCCcCccccccccc
Q psy11761         95 SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC  133 (198)
Q Consensus        95 ~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~  133 (198)
                      +|.|||.|.+|++.|..             .+++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMW-------------RDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMW-------------RDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESC-------------HHHHHHHHH
T ss_pred             CCCCceeccchhhhhhh-------------HHHHHHhhh
Confidence            47899999999999998             778877763

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0011  Score=30.53  Aligned_cols=27  Identities=33%  Similarity=0.783  Sum_probs=18.1

Q ss_pred             CCccCcc--chhcccCchhHHHhhhhcCC
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~   96 (198)
                      +||.|..  |++.+....+|..|+++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4666655  77777777777777776543

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0011  Score=30.82  Aligned_cols=27  Identities=41%  Similarity=0.919  Sum_probs=19.5

Q ss_pred             CCccCcc--chhcccCchhHHHhh-hhcCC
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQ-LIHSG   96 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~~   96 (198)
                      +||.|+.  |.+.|++..+-..|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4677766  788888887777775 66654

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0021  Score=28.96  Aligned_cols=29  Identities=24%  Similarity=0.529  Sum_probs=26.1

Q ss_pred             CCCeeCCcchhhhcChhHHHhhhhhhCCC
Q psy11761        139 PKPYQCDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +.-|-|..|...|..+-.|+-||-.|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45689999999999999999999999875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.93  E-value=0.0019  Score=31.88  Aligned_cols=27  Identities=33%  Similarity=0.775  Sum_probs=15.8

Q ss_pred             CCccCccchhcccCchhHHHhhhhcCC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (198)
                      +.|.|..|++.|.+...|--|++.|..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcc
Confidence            445566666666666666666655544

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0046  Score=27.99  Aligned_cols=26  Identities=35%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             CCccCccchhcccCchhHHHhhhhcC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      +||.|..|.....+..+|..|.++.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            57888888888888888888877654

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.0033  Score=27.83  Aligned_cols=22  Identities=27%  Similarity=0.886  Sum_probs=19.6

Q ss_pred             CeeCCcchhhhcChhHHHhhhh
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      ||+|..||+.|-.+.+|..|-.
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999998854

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.39  E-value=0.0028  Score=28.65  Aligned_cols=28  Identities=43%  Similarity=0.968  Sum_probs=21.4

Q ss_pred             CCccCcc--chhcccCchhHHHhhhhcCCC
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~   97 (198)
                      +||.|..  |.+.|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            3666654  888888888888888888764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0048  Score=27.73  Aligned_cols=25  Identities=20%  Similarity=0.486  Sum_probs=12.8

Q ss_pred             eecCccccccCChhHHhhcccCCCC
Q psy11761         44 HKCEYCHKVFDQQSSLLSHNCPQMK   68 (198)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~h~~   68 (198)
                      |.|..|.+.|....+|..|+..|+|
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            4455555555555555555544443

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.18  E-value=0.0062  Score=26.36  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.3

Q ss_pred             eeCCcchhhhcChhHHHhhhhhhC
Q psy11761        142 YQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       142 ~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      |.|+.|-+.|+.+.++..|.+.-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            789999999999999999987544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0054  Score=27.62  Aligned_cols=23  Identities=39%  Similarity=0.769  Sum_probs=12.8

Q ss_pred             CccCccchhcccCchhHHHhhhh
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQLI   93 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~   93 (198)
                      ||.|..|...|..+.+|-.|+++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45555555555555555555554

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.009  Score=28.24  Aligned_cols=27  Identities=19%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ..|.|..|||.|+.+..+.+|...-.|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            468999999999999999999766554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.012  Score=26.17  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=23.1

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      |-+|+.|..+..++..|+-|-+.|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            56899999999999999999988854

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.65  E-value=0.0092  Score=27.34  Aligned_cols=28  Identities=21%  Similarity=0.494  Sum_probs=24.2

Q ss_pred             CCeeCCc--chhhhcChhHHHhhhhhhCCC
Q psy11761        140 KPYQCDR--CSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       140 ~~~~C~~--C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      +.|.|..  |+..|.....|..|+..|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            5678865  999999999999999999875

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.49  E-value=0.0074  Score=27.07  Aligned_cols=25  Identities=36%  Similarity=0.903  Sum_probs=17.3

Q ss_pred             CCccCcc--chhcccCchhHHHhhhhc
Q psy11761         70 RPYKCDT--CEKSFTNSQNLNTHQLIH   94 (198)
Q Consensus        70 ~~~~C~~--C~~~f~~~~~l~~H~~~h   94 (198)
                      .||.|+.  |++.|.....|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3666654  777777777777776665

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.16  E-value=0.009  Score=25.71  Aligned_cols=22  Identities=36%  Similarity=1.065  Sum_probs=15.5

Q ss_pred             CccCccchhcccCchhHHHhhh
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQL   92 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~   92 (198)
                      ||+|..|...|-.+.+|..|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6677777777777777777753

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.012  Score=30.27  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=22.8

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      .-|.|..|+|.|+....|+.|-..|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            45789999999999999999987773

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.017  Score=25.62  Aligned_cols=26  Identities=35%  Similarity=0.657  Sum_probs=20.7

Q ss_pred             CccCccchhcccCchhHHHhhhhcCC
Q psy11761         71 PYKCDTCEKSFTNSQNLNTHQLIHSG   96 (198)
Q Consensus        71 ~~~C~~C~~~f~~~~~l~~H~~~h~~   96 (198)
                      |-+|++|.+..++++.|..|.+.|..
T Consensus         2 pekc~ecsyscsskaalrvh~rihc~   27 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHCT   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGCC
T ss_pred             CccCcccccccCcHHHHHHhhccccC
Confidence            34688888888888888888888753

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.014  Score=27.89  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             CCcchhhhcChhHHHhhhhhhCCC
Q psy11761        144 CDRCSQFFGDRMNLISHHCHKHKQ  167 (198)
Q Consensus       144 C~~C~k~f~~~~~L~~H~~~~~~~  167 (198)
                      |..=++.|..+..|..|++.|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            344467799999999999999886

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.022  Score=25.16  Aligned_cols=25  Identities=20%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~  165 (198)
                      .|.|+.|+-....++.|.-|++..|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4799999999999999999998654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.41  E-value=0.018  Score=26.58  Aligned_cols=22  Identities=23%  Similarity=0.605  Sum_probs=13.6

Q ss_pred             ceecCccccccCChhHHhhccc
Q psy11761         43 VHKCEYCHKVFDQQSSLLSHNC   64 (198)
Q Consensus        43 ~~~C~~C~~~f~~~~~l~~H~~   64 (198)
                      ||.|.+|+..|....-|.+|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            4566666666666666666643

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.036  Score=24.61  Aligned_cols=18  Identities=22%  Similarity=0.538  Sum_probs=16.8

Q ss_pred             chhhhcChhHHHhhhhhh
Q psy11761        147 CSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       147 C~k~f~~~~~L~~H~~~~  164 (198)
                      |+|.|...+.+++|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            999999999999999877

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.024  Score=27.66  Aligned_cols=28  Identities=32%  Similarity=0.759  Sum_probs=21.8

Q ss_pred             CCCCccC--ccchhcccCchhHHHhhhhcC
Q psy11761         68 KPRPYKC--DTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        68 ~~~~~~C--~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      .++||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3688888  558888888888888877664

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.021  Score=25.71  Aligned_cols=24  Identities=33%  Similarity=0.696  Sum_probs=17.5

Q ss_pred             CCccCccchhcccCchhHHHhhhh
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLI   93 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~   93 (198)
                      +||+|..|........+|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            477787787777777777777664

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.94  E-value=0.037  Score=26.13  Aligned_cols=29  Identities=28%  Similarity=0.547  Sum_probs=25.1

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      ++..|.|.+|.+.++..+++.+|..+-|+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            45689999999999999999999876663

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.89  E-value=0.13  Score=26.23  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=27.3

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhhhhCCCCC
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHCHKHKQSC  169 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~~~~~  169 (198)
                      .+.|..|++|+....+.-+|++|+..-|=.+|
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            47899999999999999999999987765554

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.80  E-value=0.037  Score=27.24  Aligned_cols=14  Identities=21%  Similarity=0.593  Sum_probs=10.6

Q ss_pred             CCcccCCcCchhhh
Q psy11761         97 IRPFKCTTCDKSFV  110 (198)
Q Consensus        97 ~k~~~C~~C~~~f~  110 (198)
                      .+.|.|++||..+.
T Consensus         3 ~~~~~C~vCG~i~~   16 (37)
T d1nnqa2           3 KKVYICPICGYTAV   16 (37)
T ss_dssp             SCEEECTTTCCEEE
T ss_pred             CcEEECCCCCCEec
Confidence            35689999997764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.047  Score=25.94  Aligned_cols=19  Identities=26%  Similarity=0.349  Sum_probs=12.5

Q ss_pred             hcccCchhHHHhhhhcCCC
Q psy11761         79 KSFTNSQNLNTHQLIHSGI   97 (198)
Q Consensus        79 ~~f~~~~~l~~H~~~h~~~   97 (198)
                      +.|.....|..|+++|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4566666677777777664

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=90.13  E-value=0.051  Score=26.51  Aligned_cols=13  Identities=15%  Similarity=0.296  Sum_probs=8.8

Q ss_pred             CCcccCCcCchhh
Q psy11761         97 IRPFKCTTCDKSF  109 (198)
Q Consensus        97 ~k~~~C~~C~~~f  109 (198)
                      ++-|.|++||...
T Consensus         3 ~~~~vC~vCGyi~   15 (36)
T d1yuza2           3 DKFHLCPICGYIH   15 (36)
T ss_dssp             CCEEECSSSCCEE
T ss_pred             CCEEECCCCCCEe
Confidence            3557788887664

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.06  E-value=0.065  Score=23.42  Aligned_cols=24  Identities=25%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             eeCCc--chhhhcChhHHHhhhhhhC
Q psy11761        142 YQCDR--CSQFFGDRMNLISHHCHKH  165 (198)
Q Consensus       142 ~~C~~--C~k~f~~~~~L~~H~~~~~  165 (198)
                      |.|..  |++.|..-..|..|+-.|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            55644  9999999999999987764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.069  Score=27.33  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=21.9

Q ss_pred             CCccCccchhcccCchhHHHhhhhcC
Q psy11761         70 RPYKCDTCEKSFTNSQNLNTHQLIHS   95 (198)
Q Consensus        70 ~~~~C~~C~~~f~~~~~l~~H~~~h~   95 (198)
                      .-|.|..|++.|.....|..|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35789999999999999999987764

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.84  E-value=0.042  Score=31.30  Aligned_cols=31  Identities=23%  Similarity=0.575  Sum_probs=26.1

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCC
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~   55 (198)
                      .|.||.|++.--.......|.|..|+..|.-
T Consensus        27 ky~Cp~Cgk~~vkR~a~GIW~C~kC~~~~AG   57 (73)
T d1vqoz1          27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTG   57 (73)
T ss_dssp             CBCCSSSSCSCEEEEETTEEEETTTCCEEEC
T ss_pred             CccCCCCCCceeEEEEEEEEECCCCCCEEeC
Confidence            7999999997666677789999999998754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=0.041  Score=30.99  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             CCCCeeCCcchhhhcChhHHHhhhh
Q psy11761        138 FPKPYQCDRCSQFFGDRMNLISHHC  162 (198)
Q Consensus       138 ~~~~~~C~~C~k~f~~~~~L~~H~~  162 (198)
                      |...|-|..|++.|.+...|..|.+
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCEEecccccCccCCHHHHHHHHc
Confidence            4567999999999999999999986

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.21  E-value=0.051  Score=30.97  Aligned_cols=31  Identities=23%  Similarity=0.406  Sum_probs=25.7

Q ss_pred             ccccCcccchhhcccCCCceecCccccccCC
Q psy11761         25 AYKCHQCQRLIFLSANAGVHKCEYCHKVFDQ   55 (198)
Q Consensus        25 ~~~C~~C~~~f~~~~~~~~~~C~~C~~~f~~   55 (198)
                      .|.||.|++.-........|.|..|+..|.-
T Consensus        27 ky~Cp~Cgk~~vkR~a~GIW~C~kC~~~~AG   57 (73)
T d1jj2y_          27 KHKCPVCGFKKLKRAGTGIWMCGHCGYKIAG   57 (73)
T ss_dssp             CBCCSSSCCSCEEEEETTEEEETTTCCEEEC
T ss_pred             CccCCCCCCCceEEEEEEEEECCCCCCEEeC
Confidence            7999999987666677779999999998743

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.17  Score=22.59  Aligned_cols=28  Identities=14%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             CeeCCcchhhhcChhHHHhhhhhhCCCC
Q psy11761        141 PYQCDRCSQFFGDRMNLISHHCHKHKQS  168 (198)
Q Consensus       141 ~~~C~~C~k~f~~~~~L~~H~~~~~~~~  168 (198)
                      .|-|..|||...+...+..|...-|+..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~~   29 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNSL   29 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccCC
Confidence            4789999999999999999987766654

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.52  E-value=0.15  Score=23.62  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             CCeeCCcchhhhcChhHHHhhhhh
Q psy11761        140 KPYQCDRCSQFFGDRMNLISHHCH  163 (198)
Q Consensus       140 ~~~~C~~C~k~f~~~~~L~~H~~~  163 (198)
                      ..|.|.-||-.|++.+.|..|+..
T Consensus         7 arf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cceeccccceeecChhHHHhhhhe
Confidence            468999999999999999999743

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=85.85  E-value=0.13  Score=25.19  Aligned_cols=16  Identities=13%  Similarity=-0.151  Sum_probs=11.1

Q ss_pred             CCCeeCCcchhhhcCh
Q psy11761        139 PKPYQCDRCSQFFGDR  154 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~  154 (198)
                      ...-.|+.||....++
T Consensus        20 k~~g~CD~cg~~L~qR   35 (37)
T d2ak3a2          20 KTMGIDDLTGEPLVQR   35 (37)
T ss_dssp             SSTTBCTTTCCBCBCC
T ss_pred             cccCCccCCCCcCEec
Confidence            4566888888766554

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.68  E-value=0.42  Score=21.21  Aligned_cols=26  Identities=27%  Similarity=0.607  Sum_probs=20.5

Q ss_pred             CeeCC--cchhhhcChhHHHhhhhhhCC
Q psy11761        141 PYQCD--RCSQFFGDRMNLISHHCHKHK  166 (198)
Q Consensus       141 ~~~C~--~C~k~f~~~~~L~~H~~~~~~  166 (198)
                      .|.|+  .|.-.|+++.++.+|...-|+
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            46664  499999999999999866553

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.65  E-value=0.12  Score=28.53  Aligned_cols=39  Identities=18%  Similarity=0.548  Sum_probs=25.5

Q ss_pred             CCCCcccCCcCchhhhcccCCCcccCCCcCcccccccccccccCCCCeeCCcchhh
Q psy11761         95 SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQF  150 (198)
Q Consensus        95 ~~~k~~~C~~C~~~f~~~~~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~C~~C~k~  150 (198)
                      .....|.|+.|++.|..             ......   ... ....|.|..|+-.
T Consensus        10 ~~~~~y~Cp~C~~~ys~-------------Lda~~L---~d~-~~~~F~C~~C~~e   48 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTD-------------LEANQL---FDP-MTGTFRCTFCHTE   48 (62)
T ss_dssp             CSSSEEECSSSCCEEEH-------------HHHHHH---EET-TTTEEBCSSSCCB
T ss_pred             ccCCceECCCCCCCcch-------------hhHHHh---cCc-CCCeEEecCCCCE
Confidence            34567999999999876             332221   222 3578999999754

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.87  E-value=0.31  Score=21.60  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=15.8

Q ss_pred             CcchhhhcChhHHHhhhhhh
Q psy11761        145 DRCSQFFGDRMNLISHHCHK  164 (198)
Q Consensus       145 ~~C~k~f~~~~~L~~H~~~~  164 (198)
                      +-||+.|+++.-|..|.+.-
T Consensus         6 ~gc~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHG
T ss_pred             CCchhhhccHHHHHhHHHHH
Confidence            34999999998888886543

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.99  E-value=0.27  Score=24.13  Aligned_cols=16  Identities=13%  Similarity=0.092  Sum_probs=10.4

Q ss_pred             CCCeeCCcchhhhcCh
Q psy11761        139 PKPYQCDRCSQFFGDR  154 (198)
Q Consensus       139 ~~~~~C~~C~k~f~~~  154 (198)
                      ...-.|+.||..+.++
T Consensus        20 k~~g~CD~cg~~L~qR   35 (38)
T d1akya2          20 KEDMKDDVTGEALVQR   35 (38)
T ss_dssp             SSTTBCTTTCCBCBCC
T ss_pred             CcCCccCCCCCEeeec
Confidence            4555788887665544