Psyllid ID: psy11876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK
Secondary Structure (PSIPRED)
cccccccEEEEccccccEEEEEccccccccEEcccccccEEEEEEcccccEEEEccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEcccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccc
Coil and Loop (DISEMBL)
mifldtrvfatcsddTTIALWDARNLKTRVRTLQGhsnwvkniefsskdnllvtagfdgsiytwdink
Flexible Loop (DISEMBL)
mifldtrvfatcsddttialWDARNLKTRVRTLqghsnwvkniefsskdnllvtagfdgsiytwdink
Low Complexity Region (SEG)
MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK
Disordered region (IsUnstruct)
*IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI**
Disordered Region (DISOPRED)
MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK
Disordered Region (DISEMBL)
MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK
Disordered Region (DISPRO)
MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q9VAT2	621	DDB1- and CUL4-associated	yes	N/A	0.955	0.104	0.723	2e-24
A2AKB9	566	DDB1- and CUL4-associated	yes	N/A	0.970	0.116	0.651	2e-22
Q5QP82	559	DDB1- and CUL4-associated	yes	N/A	0.970	0.118	0.651	2e-22
Q6NWH1	508	DDB1- and CUL4-associated	yes	N/A	0.970	0.129	0.636	5e-22
Q5FW06	457	DDB1- and CUL4-associated	no	N/A	0.970	0.144	0.636	3e-21
Q8AVS9	457	DDB1- and CUL4-associated	N/A	N/A	0.970	0.144	0.621	2e-20
O14021	431	RbAp48-related WD40 repea	yes	N/A	0.897	0.141	0.435	1e-08
Q8YTC2	1258	Uncharacterized WD repeat	yes	N/A	0.867	0.046	0.416	4e-08
B6QC06	452	Nuclear distribution prot	N/A	N/A	0.882	0.132	0.442	5e-08
Q54KL5	335	WD repeat-containing prot	yes	N/A	0.911	0.185	0.380	6e-08

>sp|Q9VAT2|DCA10_DROME DDB1- and CUL4-associated factor 10 homolog OS=Drosophila melanogaster GN=CG1523 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 56/65 (86%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           F D R+FAT SDD T+ALWD RN+K ++R L GHSNWVKNIE+SSKD LLV++GFDGSI+
Sbjct: 99  FFDERLFATGSDDFTVALWDLRNMKQKLRVLHGHSNWVKNIEYSSKDKLLVSSGFDGSIF 158

Query: 63  TWDIN 67
           TWDIN
Sbjct: 159 TWDIN 163

Drosophila melanogaster (taxid: 7227)

>sp|A2AKB9|DCA10_MOUSE DDB1- and CUL4-associated factor 10 OS=Mus musculus GN=Dcaf10 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct: 226 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 285

Query: 63  TWDINK 68
            WD N+
Sbjct: 286 IWDTNR 291

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q5QP82|DCA10_HUMAN DDB1- and CUL4-associated factor 10 OS=Homo sapiens GN=DCAF10 PE=1 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct: 219 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 278

Query: 63  TWDINK 68
            WD N+
Sbjct: 279 IWDTNR 284

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q6NWH1|DCA10_DANRE DDB1- and CUL4-associated factor 10 OS=Danio rerio GN=dcaf10 PE=2 SV=2

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDDTTIALWD R L ++V +L GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct: 179 FLDNRLFATCSDDTTIALWDLRKLNSKVCSLHGHASWVKNIEYDTHTRLLVTSGFDGNVI 238

Query: 63  TWDINK 68
           TWD N+
Sbjct: 239 TWDTNR 244

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Danio rerio (taxid: 7955)

>sp|Q5FW06|DCA10_XENTR DDB1- and CUL4-associated factor 10 OS=Xenopus tropicalis GN=dcaf10 PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 53/66 (80%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDDTTIALWD R L ++V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct: 118 FLDNRMFATCSDDTTIALWDLRKLNSKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 177

Query: 63  TWDINK 68
            WD N+
Sbjct: 178 IWDTNR 183

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVS9|DCA10_XENLA DDB1- and CUL4-associated factor 10 OS=Xenopus laevis GN=dcaf10 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 51/66 (77%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDDTTIALWD R L ++  TL GH++WVKNIE+     LLVT+GFDG++ 
Sbjct: 118 FLDNRMFATCSDDTTIALWDLRKLNSKACTLHGHTSWVKNIEYDKNTRLLVTSGFDGNVI 177

Query: 63  TWDINK 68
            WD N+
Sbjct: 178 IWDTNR 183

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Xenopus laevis (taxid: 8355)

>sp|O14021|PRW1_SCHPO RbAp48-related WD40 repeat-containing protein prw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prw1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDI 66
           + ATCS D TIALWD RNL  R+ TL+GH + V  I FS  +  +L +   D     WD+
Sbjct: 296 ILATCSTDKTIALWDLRNLNQRLHTLEGHEDIVTKISFSPHEEPILASTSADRRTLVWDL 355

Query: 67  NK 68
           ++
Sbjct: 356 SR 357

Has a role in chromatin assembly and chromosome segregation. Involved in the deacetylation of histones.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 8    VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
            + ATCS D T+ +WD +  K  ++TL GH+NWV +I FS    +L +A  D ++  WD+N
Sbjct: 1118 IIATCSTDQTVKIWDWQQGKC-LKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVN 1176

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|B6QC06|LIS12_PENMQ Nuclear distribution protein nudF 2 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=nudF-2 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF-SSKDNLLVTAGFDGSIYTWDI 66
           + A+CS D T+ LWD       +RTL GH + V  + F +S +NLLV+AG D SI  WD+
Sbjct: 183 LLASCSSDLTVKLWDPSKGYANIRTLSGHDHSVSAVRFLTSTENLLVSAGRDASIRIWDV 242

Query: 67  N 67
           +
Sbjct: 243 S 243

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhances dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.

Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) (taxid: 441960)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+++  + SDD TI +WD  + K  V+TL+GH  +V  + F+ + NL+V+  FD ++  W
Sbjct: 99  DSKLICSASDDKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIW 157

Query: 65  DIN 67
           D+N
Sbjct: 158 DVN 160

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
350415100	673	PREDICTED: DDB1- and CUL4-associated fac	0.955	0.096	0.846	2e-27
340725478	673	PREDICTED: DDB1- and CUL4-associated fac	0.955	0.096	0.846	3e-27
380024689	675	PREDICTED: DDB1- and CUL4-associated fac	0.955	0.096	0.830	8e-27
48119524	676	PREDICTED: DDB1- and CUL4-associated fac	0.955	0.096	0.830	9e-27
307208741	693	WD repeat-containing protein 32-like pro	0.955	0.093	0.830	1e-26
357630901	584	hypothetical protein KGM_00723 [Danaus p	0.955	0.111	0.815	2e-26
332021657	695	WD repeat-containing protein 32-like pro	0.955	0.093	0.815	5e-26
322788396	723	hypothetical protein SINV_06283 [Solenop	0.955	0.089	0.815	5e-26
307176629	690	WD repeat-containing protein 32-like pro	0.955	0.094	0.815	5e-26
170039994	515	conserved hypothetical protein [Culex qu	0.955	0.126	0.784	6e-26

>gi|350415100|ref|XP_003490533.1| PREDICTED: DDB1- and CUL4-associated factor 10-like [Bombus impatiens]

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/65 (84%), Positives = 62/65 (95%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDD+T+ALWDARNLK R+RTLQGHSNWVKNIE+S KDNLL+T+GFDGSIY
Sbjct: 106 FLDQRMFATCSDDSTVALWDARNLKNRIRTLQGHSNWVKNIEYSPKDNLLLTSGFDGSIY 165

Query: 63  TWDIN 67
           TWDIN
Sbjct: 166 TWDIN 170

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725478|ref|XP_003401096.1| PREDICTED: DDB1- and CUL4-associated factor 10 homolog [Bombus terrestris]

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/65 (84%), Positives = 62/65 (95%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDD+T+ALWDARNLK R+RTLQGHSNWVKNIE+S KDNLL+T+GFDGSIY
Sbjct: 106 FLDQRMFATCSDDSTVALWDARNLKNRIRTLQGHSNWVKNIEYSPKDNLLLTSGFDGSIY 165

Query: 63  TWDIN 67
           TWDIN
Sbjct: 166 TWDIN 170

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024689|ref|XP_003696125.1| PREDICTED: DDB1- and CUL4-associated factor 10 homolog [Apis florea]

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/65 (83%), Positives = 62/65 (95%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDD+T+ALWDARNLK R+RTLQGHSNWVKNIE+S KD+LL+T+GFDGSIY
Sbjct: 106 FLDQRMFATCSDDSTVALWDARNLKQRIRTLQGHSNWVKNIEYSPKDSLLLTSGFDGSIY 165

Query: 63  TWDIN 67
           TWDIN
Sbjct: 166 TWDIN 170

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48119524|ref|XP_396448.1| PREDICTED: DDB1- and CUL4-associated factor 10 homolog [Apis mellifera]

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 54/65 (83%), Positives = 62/65 (95%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDD+T+ALWDARNLK R+RTLQGHSNWVKNIE+S KD+LL+T+GFDGSIY
Sbjct: 106 FLDQRMFATCSDDSTVALWDARNLKQRIRTLQGHSNWVKNIEYSPKDSLLLTSGFDGSIY 165

Query: 63  TWDIN 67
           TWDIN
Sbjct: 166 TWDIN 170

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208741|gb|EFN86018.1| WD repeat-containing protein 32-like protein [Harpegnathos saltator]

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/65 (83%), Positives = 62/65 (95%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDD+T+ALWDARNLK R+RTLQGHSNWVKNIE+S KD+LL+T+GFDGSIY
Sbjct: 108 FLDQRMFATCSDDSTVALWDARNLKQRIRTLQGHSNWVKNIEYSPKDSLLLTSGFDGSIY 167

Query: 63  TWDIN 67
           TWDIN
Sbjct: 168 TWDIN 172

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357630901|gb|EHJ78720.1| hypothetical protein KGM_00723 [Danaus plexippus]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 58/65 (89%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDDTTIALWD RNLK ++R+L GHSNWVKNIEFS KD LLVT+G DGSIY
Sbjct: 115 FLDGRMFATCSDDTTIALWDVRNLKKKIRSLLGHSNWVKNIEFSVKDKLLVTSGLDGSIY 174

Query: 63  TWDIN 67
           TWDIN
Sbjct: 175 TWDIN 179

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021657|gb|EGI62016.1| WD repeat-containing protein 32-like protein [Acromyrmex echinatior]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 61/65 (93%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDD+T+ALWDARNLK R+RTLQGHSNWVKNIE+S  D+LL+T+GFDGSIY
Sbjct: 108 FLDQRMFATCSDDSTVALWDARNLKQRIRTLQGHSNWVKNIEYSPSDSLLLTSGFDGSIY 167

Query: 63  TWDIN 67
           TWDIN
Sbjct: 168 TWDIN 172

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788396|gb|EFZ14067.1| hypothetical protein SINV_06283 [Solenopsis invicta]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 61/65 (93%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDD+T+ALWDARNLK R+RTLQGHSNWVKNIE+S  D+LL+T+GFDGSIY
Sbjct: 139 FLDQRMFATCSDDSTVALWDARNLKQRIRTLQGHSNWVKNIEYSPSDSLLLTSGFDGSIY 198

Query: 63  TWDIN 67
           TWDIN
Sbjct: 199 TWDIN 203

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176629|gb|EFN66097.1| WD repeat-containing protein 32-like protein [Camponotus floridanus]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 61/65 (93%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDD+T+ALWDARNLK R+RTLQGHSNWVKNIE+S  D+LL+T+GFDGSIY
Sbjct: 108 FLDQRMFATCSDDSTVALWDARNLKQRIRTLQGHSNWVKNIEYSPNDSLLLTSGFDGSIY 167

Query: 63  TWDIN 67
           TWDIN
Sbjct: 168 TWDIN 172

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039994|ref|XP_001847800.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167863580|gb|EDS26963.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/65 (78%), Positives = 60/65 (92%)

Query: 3   FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
           FLD R+FATCSDDTT+ALWD RNLK+++R+L GHSNWVKNIE+S KD LLVT+GFDGSI+
Sbjct: 64  FLDNRMFATCSDDTTVALWDTRNLKSKIRSLHGHSNWVKNIEYSKKDCLLVTSGFDGSIF 123

Query: 63  TWDIN 67
           TWDIN
Sbjct: 124 TWDIN 128

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
FB|FBgn0039601	621	CG1523 [Drosophila melanogaste	0.955	0.104	0.723	3.7e-22
UNIPROTKB|F1NXA8	385	DCAF10 "Uncharacterized protei	0.970	0.171	0.651	5.6e-21
UNIPROTKB|Q5QP82	559	DCAF10 "DDB1- and CUL4-associa	0.970	0.118	0.651	2.6e-20
UNIPROTKB|F1ST66	560	DCAF10 "Uncharacterized protei	0.970	0.117	0.651	2.6e-20
RGD|1304730	563	Dcaf10 "DDB1 and CUL4 associat	0.970	0.117	0.651	2.6e-20
UNIPROTKB|F1MYV7	564	DCAF10 "Uncharacterized protei	0.970	0.117	0.651	2.6e-20
UNIPROTKB|E2RHV0	564	DCAF10 "Uncharacterized protei	0.970	0.117	0.651	2.6e-20
MGI|MGI:2140179	566	Dcaf10 "DDB1 and CUL4 associat	0.970	0.116	0.651	2.7e-20
UNIPROTKB|Q5FW06	457	dcaf10 "DDB1- and CUL4-associa	0.970	0.144	0.636	3.9e-20
ZFIN|ZDB-GENE-040426-2314	508	wdr32 "WD repeat domain 32" [D	0.970	0.129	0.636	4.2e-20

FB|FBgn0039601 CG1523 [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 47/65 (72%), Positives = 56/65 (86%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             F D R+FAT SDD T+ALWD RN+K ++R L GHSNWVKNIE+SSKD LLV++GFDGSI+
Sbjct:    99 FFDERLFATGSDDFTVALWDLRNMKQKLRVLHGHSNWVKNIEYSSKDKLLVSSGFDGSIF 158

Query:    63 TWDIN 67
             TWDIN
Sbjct:   159 TWDIN 163

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NXA8 DCAF10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 248 (92.4 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:    45 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 104

Query:    63 TWDINK 68
              WD N+
Sbjct:   105 IWDTNR 110

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|Q5QP82 DCAF10 "DDB1- and CUL4-associated factor 10" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:   219 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 278

Query:    63 TWDINK 68
              WD N+
Sbjct:   279 IWDTNR 284

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

UNIPROTKB|F1ST66 DCAF10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 248 (92.4 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:   219 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 278

Query:    63 TWDINK 68
              WD N+
Sbjct:   279 IWDTNR 284

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

RGD|1304730 Dcaf10 "DDB1 and CUL4 associated factor 10" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:   223 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 282

Query:    63 TWDINK 68
              WD N+
Sbjct:   283 IWDTNR 288

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA;ISO

UNIPROTKB|F1MYV7 DCAF10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:   223 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 282

Query:    63 TWDINK 68
              WD N+
Sbjct:   283 IWDTNR 288

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

UNIPROTKB|E2RHV0 DCAF10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:   223 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 282

Query:    63 TWDINK 68
              WD N+
Sbjct:   283 IWDTNR 288

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

MGI|MGI:2140179 Dcaf10 "DDB1 and CUL4 associated factor 10" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L T+V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:   226 FLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 285

Query:    63 TWDINK 68
              WD N+
Sbjct:   286 IWDTNR 291

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

UNIPROTKB|Q5FW06 dcaf10 "DDB1- and CUL4-associated factor 10" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 244 (91.0 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 42/66 (63%), Positives = 53/66 (80%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L ++V TL GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:   118 FLDNRMFATCSDDTTIALWDLRKLNSKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVI 177

Query:    63 TWDINK 68
              WD N+
Sbjct:   178 IWDTNR 183

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-040426-2314 wdr32 "WD repeat domain 32" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 4.2e-20, P = 4.2e-20
 Identities = 42/66 (63%), Positives = 54/66 (81%)

Query:     3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
             FLD R+FATCSDDTTIALWD R L ++V +L GH++WVKNIE+ +   LLVT+GFDG++ 
Sbjct:   179 FLDNRLFATCSDDTTIALWDLRKLNSKVCSLHGHASWVKNIEYDTHTRLLVTSGFDGNVI 238

Query:    63 TWDINK 68
             TWD N+
Sbjct:   239 TWDTNR 244

GO:0003674 "molecular_function" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2AKB9	DCA10_MOUSE	No assigned EC number	0.6515	0.9705	0.1166	yes	N/A
Q5QP82	DCA10_HUMAN	No assigned EC number	0.6515	0.9705	0.1180	yes	N/A
Q9VAT2	DCA10_DROME	No assigned EC number	0.7230	0.9558	0.1046	yes	N/A
Q6NWH1	DCA10_DANRE	No assigned EC number	0.6363	0.9705	0.1299	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
smart00320	40	smart00320, WD40, WD40 repeats	6e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	8e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D R+ ++ S D TI +WD    K  + TL+GH++WV ++ FS     + ++  DG+I  W
Sbjct: 104 DGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 65  DIN 67
           D+ 
Sbjct: 163 DLR 165

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D     + S D TI LWD    K  + TL+GH N V ++ FS    LL +   DG+I  W
Sbjct: 188 DGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 65  DINK 68
           D+  
Sbjct: 247 DLRT 250

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.3 bits (131), Expect = 1e-10
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D    A+ S D TI LWD R  K  V TL GH+  V ++ FS     L+++  DG+I  W
Sbjct: 146 DGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 65  DINK 68
           D++ 
Sbjct: 205 DLST 208

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 4e-10
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D  + A+ S+D TI +WD R     V+TL GH+N V ++ +S     L +   DG+I  W
Sbjct: 230 DGYLLASGSEDGTIRVWDLRT-GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Query: 65  D 65
           D
Sbjct: 289 D 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 9e-10
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 1   MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
               D    A+ S D TI LWD    +  VRTL GH+++V ++ FS    +L ++  D +
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 61  IYTWDINK 68
           I  WD+  
Sbjct: 117 IKVWDVET 124

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 1e-09
 Identities = 25/64 (39%), Positives = 37/64 (57%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D  + A+ S D TI LWD R+  + +RTL GHS+ V ++ FS    LL +   DG++  W
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 65  DINK 68
           D+  
Sbjct: 312 DLET 315

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 5  DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
          D ++ AT S D TI +WD    +  +RTL+GH+  V+++  S+    L +   D +I  W
Sbjct: 20 DGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78

Query: 65 DINK 68
          D+  
Sbjct: 79 DLET 82

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 6e-07
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 27 KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
             ++TL+GH+  V ++ FS     L +   DG+I  WD
Sbjct: 2  GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 7e-07
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 27 KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
             +RTL+GH+  V ++ FS   NLL +   DG++  WD
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.8 bits (99), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 6   TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
             + A+ S D TI LWD    K    TL GHS+ V +  FS   +LL +   DG+I  WD
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWD 269

Query: 66  IN 67
           + 
Sbjct: 270 LR 271

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 1e-05
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D RV ++ S D T+ LWD       +R L GH++ V +++FS     L +   D +I  W
Sbjct: 381 DGRVVSSGSTDGTVRLWDLSTGS-LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Query: 65  DINK 68
           D+  
Sbjct: 440 DLKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 30 VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
           RTL+GH+  V  + FS    LL T   DG+I  WD+ 
Sbjct: 2  RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE 39

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 2e-05
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTR-VRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIY 62
           D ++ A+ S D T+ LWD    K     TL+GH   V ++ FS   +LLV+ G  DG+I 
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 63  TWDINK 68
            WD+  
Sbjct: 355 LWDLRT 360

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.7 bits (91), Expect = 2e-05
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDI 66
           + +  S D TI LWD R  K  + TL GH++ V ++ FS     L+ +   DG+I  WD+
Sbjct: 170 LASGSSLDGTIKLWDLRTGKP-LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 67  NK 68
           + 
Sbjct: 229 ST 230

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 3   FLDTRVFATCSDDTTIALWD------ARNLKTRVRTLQGHSNWVKNIEF-SSKDNLLVTA 55
           F   ++F T S+D TI  W        +N+   +  LQGH+  V  + F  S  N+L +A
Sbjct: 86  FDPQKLF-TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144

Query: 56  GFDGSIYTWDINK 68
           G D  +  WD+ +
Sbjct: 145 GADMVVNVWDVER 157

Length = 493

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.3 bits (90), Expect = 3e-05
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYT 63
           ++ + A+ S D T+ LWD       +RTL+GHS  V ++ FS    LL +    DG+I  
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 64  WDINK 68
           WD+  
Sbjct: 183 WDLRT 187

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 6   TRVFATCSDDTTIALWDARNLKTRVR-------TLQGHSNWVKNIEFSSKDN-LLVTAGF 57
           + + A+ S+D TI +W+  +    V+        L+GH   +  I+++  +  ++ ++GF
Sbjct: 87  SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146

Query: 58  DGSIYTWDI 66
           D  +  WDI
Sbjct: 147 DSFVNIWDI 155

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG0271|consensus	480		99.77
KOG0272|consensus	459		99.71
KOG0263|consensus	707		99.69
KOG0266|consensus	456		99.68
KOG0271|consensus	480		99.67
KOG0291|consensus	893		99.65
KOG0279|consensus	315		99.63
KOG0266|consensus	456		99.62
KOG0263|consensus	707		99.61
KOG0295|consensus	406		99.61
KOG0264|consensus	422		99.6
KOG0272|consensus	459		99.6
KOG0289|consensus	506		99.59
KOG1273|consensus	405		99.59
PTZ00421	493	coronin; Provisional	99.59
KOG0315|consensus	311		99.58
KOG0319|consensus	775		99.56
KOG0279|consensus	315		99.56
KOG0286|consensus	343		99.56
KOG0318|consensus	603		99.55
KOG0284|consensus	464		99.55
KOG0278|consensus	334		99.52
PTZ00421	493	coronin; Provisional	99.52
KOG0316|consensus	307		99.51
KOG0283|consensus	712		99.51
KOG0285|consensus	460		99.5
KOG0293|consensus	519		99.5
KOG0302|consensus	440		99.47
KOG0282|consensus	503		99.47
KOG0265|consensus	338		99.47
KOG0269|consensus	839		99.46
KOG0639|consensus	705		99.45
KOG0319|consensus	775		99.45
KOG0276|consensus	794		99.44
KOG2394|consensus	636		99.43
PTZ00420	568	coronin; Provisional	99.43
KOG0273|consensus	524		99.43
KOG0282|consensus	503		99.42
KOG0313|consensus	423		99.41
KOG0315|consensus	311		99.41
PLN00181	793	protein SPA1-RELATED; Provisional	99.39
KOG0285|consensus	460		99.39
PTZ00420	568	coronin; Provisional	99.39
KOG0322|consensus	323		99.37
KOG0647|consensus	347		99.36
KOG0292|consensus	1202		99.36
KOG0286|consensus	343		99.36
KOG0277|consensus	311		99.36
KOG0264|consensus	422		99.35
KOG0265|consensus	338		99.34
KOG0273|consensus	524		99.34
KOG0284|consensus	464		99.32
KOG0645|consensus	312		99.32
KOG0310|consensus	487		99.32
KOG0276|consensus	794		99.32
KOG0275|consensus	508		99.32
KOG0772|consensus	641		99.31
KOG0299|consensus	479		99.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.31
KOG1034|consensus	385		99.31
KOG1332|consensus	299		99.3
KOG0281|consensus	499		99.29
KOG0318|consensus	603		99.29
KOG0292|consensus	1202		99.29
KOG0293|consensus	519		99.28
KOG0302|consensus	440		99.28
KOG0308|consensus	735		99.27
KOG0973|consensus	942		99.27
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.26
KOG0277|consensus	311		99.26
KOG0291|consensus	893		99.26
KOG0296|consensus	399		99.26
KOG0645|consensus	312		99.26
KOG0296|consensus	399		99.26
KOG4283|consensus	397		99.26
KOG0305|consensus	484		99.25
KOG0295|consensus	406		99.25
KOG1007|consensus	370		99.25
KOG0270|consensus	463		99.25
KOG0316|consensus	307		99.25
KOG0288|consensus	459		99.25
KOG1445|consensus	1012		99.24
KOG0281|consensus	499		99.24
KOG0771|consensus	398		99.24
KOG0278|consensus	334		99.23
KOG1446|consensus	311		99.23
PLN00181	793	protein SPA1-RELATED; Provisional	99.23
KOG0640|consensus	430		99.22
KOG0306|consensus	888		99.21
KOG2096|consensus	420		99.2
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.19
KOG0649|consensus	325		99.18
KOG0647|consensus	347		99.18
KOG0643|consensus	327		99.18
KOG3914|consensus	390		99.18
KOG0274|consensus	537		99.17
KOG1407|consensus	313		99.17
KOG0306|consensus	888		99.17
KOG0269|consensus	839		99.17
KOG0294|consensus	362		99.16
KOG1063|consensus	764		99.14
KOG0283|consensus	712		99.13
KOG1272|consensus	545		99.13
KOG0973|consensus	942		99.13
KOG0275|consensus	508		99.12
KOG0310|consensus	487		99.12
KOG0294|consensus	362		99.08
KOG1539|consensus	910		99.08
KOG0303|consensus	472		99.07
KOG0303|consensus	472		99.07
KOG1274|consensus	933		99.05
KOG0267|consensus	825		99.05
KOG0308|consensus	735		99.05
KOG0646|consensus	476		99.05
KOG0290|consensus	364		99.05
KOG1446|consensus	311		99.03
KOG1036|consensus	323		99.02
KOG0643|consensus	327		99.02
KOG0301|consensus	745		99.01
KOG0641|consensus	350		99.01
KOG0274|consensus	537		99.01
KOG0313|consensus	423		99.01
KOG0300|consensus	481		99.0
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.98
KOG0642|consensus	577		98.98
KOG0772|consensus	641		98.96
KOG1408|consensus	1080		98.96
KOG0646|consensus	476		98.95
KOG0305|consensus	484		98.94
KOG0267|consensus	825		98.93
KOG0268|consensus	433		98.93
KOG0640|consensus	430		98.92
KOG0642|consensus	577		98.92
KOG0290|consensus	364		98.92
KOG0300|consensus	481		98.91
KOG2445|consensus	361		98.9
KOG1007|consensus	370		98.9
KOG1539|consensus	910		98.87
KOG1009|consensus	434		98.86
KOG0268|consensus	433		98.85
KOG0641|consensus	350		98.85
KOG1332|consensus	299		98.85
KOG0321|consensus	720		98.84
KOG1034|consensus	385		98.84
KOG1274|consensus	933		98.84
KOG0288|consensus	459		98.83
KOG3881|consensus	412		98.83
KOG4328|consensus	498		98.83
KOG2055|consensus	514		98.83
KOG0639|consensus	705		98.82
KOG1407|consensus	313		98.81
KOG1188|consensus	376		98.8
KOG0299|consensus	479		98.8
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.79
KOG0644|consensus	1113		98.78
KOG0280|consensus	339		98.78
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.75
KOG0289|consensus	506		98.75
KOG4283|consensus	397		98.75
KOG4714|consensus	319		98.74
KOG0321|consensus	720		98.73
KOG4328|consensus	498		98.71
KOG0974|consensus	967		98.71
KOG2919|consensus	406		98.7
KOG2110|consensus	391		98.68
KOG2048|consensus	691		98.68
KOG2111|consensus	346		98.67
KOG0270|consensus	463		98.66
KOG0307|consensus	1049		98.66
KOG2110|consensus	391		98.65
KOG1310|consensus	758		98.63
KOG1538|consensus	1081		98.62
KOG1063|consensus	764		98.6
KOG1445|consensus	1012		98.57
KOG2445|consensus	361		98.57
KOG2394|consensus	636		98.55
KOG2106|consensus	626		98.55
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.55
KOG2055|consensus	514		98.55
KOG0307|consensus	1049		98.54
KOG4378|consensus	673		98.54
KOG1009|consensus	434		98.54
KOG1963|consensus	792		98.54
KOG2106|consensus	626		98.54
KOG1517|consensus	1387		98.53
KOG1524|consensus	737		98.51
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.51
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.51
COG2319	466	FOG: WD40 repeat [General function prediction only	98.51
KOG0301|consensus	745		98.47
KOG1408|consensus	1080		98.44
KOG2919|consensus	406		98.44
KOG4378|consensus	673		98.44
KOG0771|consensus	398		98.41
KOG2096|consensus	420		98.41
KOG0974|consensus	967		98.4
KOG1240|consensus	1431		98.37
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.36
KOG2315|consensus	566		98.35
KOG2048|consensus	691		98.34
KOG0650|consensus	733		98.34
KOG3881|consensus	412		98.33
KOG1188|consensus	376		98.32
KOG1036|consensus	323		98.32
KOG1523|consensus	361		98.3
KOG0644|consensus	1113		98.29
KOG2139|consensus	445		98.28
COG2319	466	FOG: WD40 repeat [General function prediction only	98.27
KOG1645|consensus	463		98.26
KOG2321|consensus	703		98.26
KOG1587|consensus	555		98.25
KOG4497|consensus	447		98.21
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.21
KOG1273|consensus	405		98.21
KOG4190|consensus	1034		98.16
KOG1064|consensus	2439		98.14
KOG1275|consensus	1118		98.13
KOG1587|consensus	555		98.13
KOG2695|consensus	425		98.1
KOG1523|consensus	361		98.1
KOG4227|consensus	609		98.09
PRK01742	429	tolB translocation protein TolB; Provisional	98.08
KOG1310|consensus	758		98.07
KOG0650|consensus	733		98.04
KOG1538|consensus	1081		98.02
KOG1334|consensus	559		98.0
PRK11028	330	6-phosphogluconolactonase; Provisional	97.99
KOG0649|consensus	325		97.97
KOG2111|consensus	346		97.96
KOG1409|consensus	404		97.89
PRK11028	330	6-phosphogluconolactonase; Provisional	97.89
KOG1524|consensus	737		97.86
KOG4227|consensus	609		97.86
KOG4532|consensus	344		97.82
KOG2695|consensus	425		97.81
KOG1963|consensus	792		97.79
KOG4547|consensus	541		97.76
KOG2041|consensus	1189		97.66
KOG0280|consensus	339		97.66
PRK01742	429	tolB translocation protein TolB; Provisional	97.66
KOG4640|consensus	665		97.62
KOG1272|consensus	545		97.6
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.57
KOG4532|consensus	344		97.56
KOG1517|consensus	1387		97.56
KOG2321|consensus	703		97.53
PRK02889	427	tolB translocation protein TolB; Provisional	97.47
KOG4547|consensus	541		97.45
PRK02889	427	tolB translocation protein TolB; Provisional	97.42
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.41
KOG4497|consensus	447		97.41
COG4946	668	Uncharacterized protein related to the periplasmic	97.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.34
KOG0322|consensus	323		97.24
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.2
KOG1409|consensus	404		97.15
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.14
KOG1334|consensus	559		97.13
KOG0309|consensus	1081		97.12
KOG2139|consensus	445		97.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.05
KOG4714|consensus	319		97.04
KOG2079|consensus	1206		97.0
KOG3621|consensus	726		96.98
KOG3617|consensus	1416		96.94
KOG1240|consensus	1431		96.93
PRK04922	433	tolB translocation protein TolB; Provisional	96.91
PRK05137	435	tolB translocation protein TolB; Provisional	96.9
KOG1064|consensus	2439		96.86
PRK03629	429	tolB translocation protein TolB; Provisional	96.83
KOG1354|consensus	433		96.78
PRK04922	433	tolB translocation protein TolB; Provisional	96.73
KOG2066|consensus	846		96.72
KOG0309|consensus	1081		96.63
PRK03629	429	tolB translocation protein TolB; Provisional	96.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.48
KOG2079|consensus	1206		96.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.44
PRK00178	430	tolB translocation protein TolB; Provisional	96.43
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.37
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.3
PRK01029	428	tolB translocation protein TolB; Provisional	96.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.26
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.23
KOG2444|consensus	238		96.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.99
KOG3621|consensus	726		95.89
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	95.76
PRK00178	430	tolB translocation protein TolB; Provisional	95.72
KOG2395|consensus	644		95.59
PRK04792	448	tolB translocation protein TolB; Provisional	95.52
PRK04792	448	tolB translocation protein TolB; Provisional	95.49
PRK05137	435	tolB translocation protein TolB; Provisional	95.45
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	95.22
KOG2114|consensus	933		95.13
KOG4649|consensus	354		94.99
KOG1354|consensus	433		94.94
KOG2066|consensus	846		94.89
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.69
KOG2377|consensus	657		94.52
KOG3914|consensus	390		94.3
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.21
KOG1008|consensus	783		94.07
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.02
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.96
KOG1912|consensus	1062		93.96
KOG1832|consensus	1516		93.95
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.78
KOG4640|consensus	665		93.74
PRK01029	428	tolB translocation protein TolB; Provisional	93.55
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	93.43
KOG1912|consensus	1062		93.31
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	93.05
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.81
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.75
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.69
PRK02888	635	nitrous-oxide reductase; Validated	92.68
COG5167	776	VID27 Protein involved in vacuole import and degra	92.58
KOG0882|consensus	558		92.23
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.0
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.69
COG4946	668	Uncharacterized protein related to the periplasmic	91.51
KOG2041|consensus	1189		91.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.28
KOG1920|consensus	1265		90.95
KOG1916|consensus	1283		90.87
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	90.35
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.01
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.55
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.8
KOG1645|consensus	463		88.28
KOG2315|consensus	566		88.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.19
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	87.3
PRK04043	419	tolB translocation protein TolB; Provisional	87.04
KOG4190|consensus	1034		86.74
KOG2314|consensus	698		86.71
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	86.47
KOG1832|consensus	1516		85.88
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	85.0
KOG2314|consensus	698		84.51
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	84.0
KOG4649|consensus	354		83.55
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	83.12
KOG1275|consensus	1118		83.0
PF14727	418	PHTB1_N: PTHB1 N-terminus	82.73
KOG1916|consensus	1283		82.15
KOG3630|consensus	1405		82.01
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	80.62

>KOG0271|consensus

Probab=99.77  E-value=3e-18  Score=83.33  Aligned_cols=65  Identities=34%  Similarity=0.554  Sum_probs=61.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |+|++..+++|+-|..+++||..+ ..+..++.+|..+|.+++|+|++..+++++.+|.|++||..
T Consensus       123 fsp~g~~l~tGsGD~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  123 FSPTGSRLVTGSGDTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ecCCCceEEecCCCceEEeeccCC-CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            688999999999999999999998 78899999999999999999999999999999999999965

>KOG0272|consensus

Probab=99.71  E-value=5.5e-17  Score=79.40  Aligned_cols=65  Identities=26%  Similarity=0.370  Sum_probs=61.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +-+||..+++|+.|..-++||+++ ...+-.+.+|..+|..+.|+|++.++++|+.|++++|||++
T Consensus       311 f~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  311 FQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             ecCCCceeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence            567999999999999999999999 77888889999999999999999999999999999999986

>KOG0263|consensus

Probab=99.69  E-value=4e-16  Score=80.31  Aligned_cols=65  Identities=32%  Similarity=0.535  Sum_probs=61.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |.||++++++|+.|..+++|+..+ +..+..+.+|..+|.+++++|+++.+++++.|+.|.+||+.
T Consensus       543 FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  543 FHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             ECCcccccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            568999999999999999999988 67788999999999999999999999999999999999985

>KOG0266|consensus

Probab=99.68  E-value=1.4e-15  Score=76.37  Aligned_cols=68  Identities=34%  Similarity=0.653  Sum_probs=61.5

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .++|++..+++++.|+.+++|+..........+.+|...+.+++|+|+++.+++++.|+++++||+++
T Consensus       210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~  277 (456)
T KOG0266|consen  210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT  277 (456)
T ss_pred             EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence            36889999999999999999999553567788999999999999999999999999999999999863

>KOG0271|consensus

Probab=99.67  E-value=3.8e-16  Score=76.22  Aligned_cols=67  Identities=28%  Similarity=0.526  Sum_probs=62.2

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .|+||++++++++.|+.|++|+.++ ++.+..+.+|-..|..++|+.+.+++++++.|.++.+|++++
T Consensus       374 ~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  374 SFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             EECCCccEEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence            3789999999999999999999998 677778999999999999999999999999999999999763

>KOG0291|consensus

Probab=99.65  E-value=2.2e-15  Score=78.19  Aligned_cols=65  Identities=23%  Similarity=0.570  Sum_probs=61.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+|||+.+++|..|+.|++|+... +.++.++..|+..+..++|+..++.+++.+.||+++.||+.
T Consensus       358 YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk  422 (893)
T KOG0291|consen  358 YSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK  422 (893)
T ss_pred             ECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence            578999999999999999999988 78999999999999999999999999999999999999975

>KOG0279|consensus

Probab=99.63  E-value=4.5e-15  Score=70.02  Aligned_cols=65  Identities=26%  Similarity=0.445  Sum_probs=60.5

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +++++++++.+++.|+.+++||... ..+...+.+|...|.+++++++++.+++++.|.++.+|+.
T Consensus        70 ~~s~dg~~alS~swD~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   70 VLSSDGNFALSASWDGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             EEccCCceEEeccccceEEEEEecC-CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            3678999999999999999999988 5788889999999999999999999999999999999985

>KOG0266|consensus

Probab=99.62  E-value=1.5e-14  Score=72.81  Aligned_cols=66  Identities=39%  Similarity=0.747  Sum_probs=61.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |+|+++.+++|+.|+.|++|+.+. ..+...+.+|...+..+++.++++.+++++.|+.+++||..+
T Consensus       254 f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~  319 (456)
T KOG0266|consen  254 FSPDGNLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET  319 (456)
T ss_pred             ecCCCCEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC
Confidence            678889999999999999999998 788889999999999999999999999999999999999763

>KOG0263|consensus

Probab=99.61  E-value=3.5e-15  Score=76.99  Aligned_cols=66  Identities=30%  Similarity=0.566  Sum_probs=61.2

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++|+|+.+++|+.|+.|++||+.. ...+..+.+|.+.+.++.|+.++..+++++.|..+++||+.
T Consensus       584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  584 AFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             EEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            3789999999999999999999987 67777888999999999999999999999999999999975

>KOG0295|consensus

Probab=99.61  E-value=1.8e-14  Score=69.93  Aligned_cols=61  Identities=31%  Similarity=0.676  Sum_probs=57.3

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.+.+++.|+.|++|++.+ ..++.++.+|.++|..++++|.|++++++-.|+++++||++.
T Consensus       305 ~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             cEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence            5899999999999999998 688889999999999999999999999999999999999863

>KOG0264|consensus

Probab=99.60  E-value=1.7e-14  Score=70.96  Aligned_cols=64  Identities=36%  Similarity=0.707  Sum_probs=58.0

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++..||+|+.|+.|.+||+++...+...+.+|...|..+.|+|. ...+++++.|+.+.+||+.+
T Consensus       284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            56789999999999999999877889999999999999999996 47888999999999999753

>KOG0272|consensus

Probab=99.60  E-value=5.1e-15  Score=72.74  Aligned_cols=65  Identities=31%  Similarity=0.554  Sum_probs=59.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+|..+++|+.|+.+++||++. ....+++.+|.+.|..+++.| .+..+++++.|+++++|.-.
T Consensus       353 fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  353 FSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             ECCCceEEeecCCCCcEEEeeecc-cccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence            789999999999999999999987 677899999999999999999 57999999999999999643

>KOG0289|consensus

Probab=99.59  E-value=1.3e-14  Score=71.74  Aligned_cols=66  Identities=36%  Similarity=0.621  Sum_probs=60.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.|||..|.+|..|+.+++|++.. ......+.+|..+|..++|+.+|.++++...|+.+.+||+|+
T Consensus       355 fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  355 FHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             EcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence            678999999999999999999987 446778889999999999999999999999999999999874

>KOG1273|consensus

Probab=99.59  E-value=1.3e-14  Score=69.71  Aligned_cols=65  Identities=20%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |++.|..++.|..||.+.+||+.+ ..+...+.+|..++.+++|+++++.+++++.|..+.+||+.
T Consensus        31 Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~   95 (405)
T KOG1273|consen   31 FSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL   95 (405)
T ss_pred             eccCcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence            567889999999999999999988 56677788999999999999999999999999999999975

>PTZ00421 coronin; Provisional

Probab=99.59  E-value=6.3e-14  Score=71.12  Aligned_cols=66  Identities=21%  Similarity=0.399  Sum_probs=57.5

Q ss_pred             eeecC-cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDT-RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|++ +.+++++.|+.+++|++.. ......+..|...+.+++|+|++..+++++.|+.+++||+++
T Consensus       133 f~P~~~~iLaSgs~DgtVrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        133 FHPSAMNVLASAGADMVVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             eCcCCCCEEEEEeCCCEEEEEECCC-CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC
Confidence            45654 6899999999999999987 556667788999999999999999999999999999999863

>KOG0315|consensus

Probab=99.58  E-value=3.5e-14  Score=66.48  Aligned_cols=66  Identities=33%  Similarity=0.641  Sum_probs=59.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++.+|++++.|..+++|+....-.......+|+..++..+|+-+++++++++.|+++++|+++
T Consensus       223 lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  223 LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            689999999999999999999987424455678899999999999999999999999999999975

>KOG0319|consensus

Probab=99.56  E-value=3.7e-14  Score=73.41  Aligned_cols=65  Identities=32%  Similarity=0.514  Sum_probs=60.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+...+++|+.|...++|+.+. ......+.+|..+++++.|++..+.+++++.|.++++|.+.
T Consensus       471 ia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  471 IAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             ecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence            578899999999999999999985 67788899999999999999999999999999999999875

>KOG0279|consensus

Probab=99.56  E-value=5.2e-14  Score=66.53  Aligned_cols=66  Identities=29%  Similarity=0.540  Sum_probs=58.4

Q ss_pred             eeec--CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLD--TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |+|+  ...|++++.|+.+++|++++ .+....+.+|...+..++++|++.+.++++.|+.+.+||+++
T Consensus       156 fsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  156 FSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             EcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence            5676  57899999999999999987 455667788999999999999999999999999999999863

>KOG0286|consensus

Probab=99.56  E-value=5.5e-14  Score=66.89  Aligned_cols=65  Identities=23%  Similarity=0.436  Sum_probs=60.7

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++| +++.+++|+.|...++||++. ......+.+|+..|+.++|.|.+.-+++++.|++.++||++
T Consensus       194 l~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  194 LSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             cCCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            456 789999999999999999998 67888999999999999999999999999999999999987

>KOG0318|consensus

Probab=99.55  E-value=1.6e-13  Score=69.24  Aligned_cols=65  Identities=25%  Similarity=0.439  Sum_probs=58.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ---GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++||+..+++.+.|+.+.+|+-.+ ...+..+.   +|...|..++|+|++..+++++.|.++++||+.
T Consensus       198 ysPDG~~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs  265 (603)
T KOG0318|consen  198 YSPDGSRFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS  265 (603)
T ss_pred             ECCCCCeEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence            589999999999999999999887 55566666   789999999999999999999999999999975

>KOG0284|consensus

Probab=99.55  E-value=4.3e-14  Score=69.51  Aligned_cols=67  Identities=31%  Similarity=0.547  Sum_probs=59.4

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++|+.+.|++++.|+.+++|+..- ..+...+.+|...|.+++|+|..-++++++.|..+.+||.++
T Consensus       187 afSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  187 AFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             ccCCCCceeEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            4788899999999999999999875 345556789999999999999988999999999999999874

>KOG0278|consensus

Probab=99.52  E-value=2.1e-13  Score=64.10  Aligned_cols=65  Identities=20%  Similarity=0.392  Sum_probs=57.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.|+...++.|+.|..++.||..+ +..+..+ .+|..+|+++.|+|++...++++.||+|++|+..
T Consensus       232 L~P~k~~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  232 LHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             ccCCCceEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            467888999999999999999988 5555554 8899999999999999999999999999999753

>PTZ00421 coronin; Provisional

Probab=99.52  E-value=8e-13  Score=67.23  Aligned_cols=66  Identities=30%  Similarity=0.470  Sum_probs=55.7

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCC------cceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLK------TRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      ++| +++.+++|+.|+.|++|++....      .++..+.+|...|..++|+|.. ..+++++.|+.+++||+.
T Consensus        83 fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~  156 (493)
T PTZ00421         83 FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE  156 (493)
T ss_pred             EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence            456 67899999999999999986521      3456778899999999999974 789999999999999976

>KOG0316|consensus

Probab=99.51  E-value=1.7e-13  Score=63.96  Aligned_cols=66  Identities=26%  Similarity=0.612  Sum_probs=60.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+.|+..|++|+-|..+.+|+..+ ++....+.+|..+|+.++|+.+...+++++.|..+++||.++
T Consensus        67 ~s~Dnskf~s~GgDk~v~vwDV~T-Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen   67 LSSDNSKFASCGGDKAVQVWDVNT-GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             ccccccccccCCCCceEEEEEccc-CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence            355777899999999999999998 778889999999999999999999999999999999999874

>KOG0283|consensus

Probab=99.51  E-value=2.2e-13  Score=70.84  Aligned_cols=62  Identities=23%  Similarity=0.555  Sum_probs=53.2

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ...++|+++++|..+++|.+.. ..++ ....|.+.|.+++|+| +.+++++|+.|+.+++|++.
T Consensus       378 SKn~fLLSSSMDKTVRLWh~~~-~~CL-~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  378 SKNNFLLSSSMDKTVRLWHPGR-KECL-KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             ccCCeeEeccccccEEeecCCC-ccee-eEEecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence            3567999999999999999975 4444 4556999999999999 57999999999999999874

>KOG0285|consensus

Probab=99.50  E-value=3.7e-13  Score=65.72  Aligned_cols=64  Identities=30%  Similarity=0.560  Sum_probs=57.9

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .|.-..+++|++|..+++||+++ +..+..+.+|...|..+.+.|....+++++.|+++++||++
T Consensus       244 hPTldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~  307 (460)
T KOG0285|consen  244 HPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR  307 (460)
T ss_pred             cccceeEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeec
Confidence            35567899999999999999998 77888999999999999998888889999999999999975

>KOG0293|consensus

Probab=99.50  E-value=1e-13  Score=68.51  Aligned_cols=62  Identities=23%  Similarity=0.494  Sum_probs=56.0

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..++++|++|+.|++|+... +.++....+|...|++++|+|. ...+++++.|+++++|...
T Consensus       451 ~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            457899999999999999987 7889999999999999999996 4788999999999999764

>KOG0302|consensus

Probab=99.47  E-value=1.1e-12  Score=64.30  Aligned_cols=64  Identities=33%  Similarity=0.659  Sum_probs=54.2

Q ss_pred             cCcEEEEeeCCCCEEEeecCCC-CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNL-KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.+.|++|+.|+.|++||++.. +.+......|...|+-+.|+....++++|+.+|++.+||+++
T Consensus       269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~  333 (440)
T KOG0302|consen  269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ  333 (440)
T ss_pred             cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhh
Confidence            4578999999999999999863 334444578888999999999877999999999999999874

>KOG0282|consensus

Probab=99.47  E-value=5.8e-14  Score=69.96  Aligned_cols=67  Identities=22%  Similarity=0.460  Sum_probs=60.7

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++| .+.+++++++|+.|++|+....+.++.++.+|..+|..++|++++..+++++.|+++++||..+
T Consensus       222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             hccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            355 6788999999999999999876788899999999999999999999999999999999999764

>KOG0265|consensus

Probab=99.47  E-value=1.5e-12  Score=62.26  Aligned_cols=67  Identities=24%  Similarity=0.416  Sum_probs=58.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |.|++..|++|+.|..|.+|+........-...+|...|..+.|.+++..+++++.|.+++.||+++
T Consensus        55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            6789999999999999999996543444566779999999999999999999999999999999863

>KOG0269|consensus

Probab=99.46  E-value=3.9e-13  Score=70.16  Aligned_cols=66  Identities=24%  Similarity=0.397  Sum_probs=59.5

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++| .+..|+++...|.+.+||++....+...+.+|.++|.++.|+|+..++++|+.|+.+++|++.
T Consensus       184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence            344 467899999999999999987777888899999999999999999999999999999999975

>KOG0639|consensus

Probab=99.45  E-value=3.2e-13  Score=68.31  Aligned_cols=67  Identities=36%  Similarity=0.659  Sum_probs=61.4

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++||.+..+++..||.|.+||+.+ ...+..+.+|..+..++..++++..+=+++.|.+++.||.++
T Consensus       516 a~spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  516 AISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             hcCCccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence            3678999999999999999999987 677889999999999999999999999999999999999863

>KOG0319|consensus

Probab=99.45  E-value=1.5e-12  Score=67.73  Aligned_cols=66  Identities=30%  Similarity=0.606  Sum_probs=60.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |+++.+.++++|.|+.+++|.+.+ ..+..++.+|+..|....|-.++..+++++.||.+++|++.+
T Consensus       513 Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  513 FSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             eccccceeEeccCCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            567888999999999999999988 688999999999999999999999999999999999999764

>KOG0276|consensus

Probab=99.44  E-value=9.5e-13  Score=67.87  Aligned_cols=66  Identities=26%  Similarity=0.430  Sum_probs=57.9

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.| |.+.+++++.|+.+++|.+.. ..+..++.+|..+|+++.+-+.  ..+++++..|.++++||+++
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence            456 568999999999999999987 5678889999999999999774  47899999999999999874

>KOG2394|consensus

Probab=99.43  E-value=3.6e-13  Score=68.25  Aligned_cols=66  Identities=18%  Similarity=0.290  Sum_probs=57.4

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++|++++++.+.|+.+++++..+ ..........-....+++|+|+++++++++.|..+.||.+.
T Consensus       297 ~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  297 AFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             eEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence            4789999999999999999999987 34455566677788999999999999999999999999864

>PTZ00420 coronin; Provisional

Probab=99.43  E-value=9.8e-12  Score=64.21  Aligned_cols=67  Identities=24%  Similarity=0.498  Sum_probs=53.4

Q ss_pred             eeec-CcEEEEeeCCCCEEEeecCCCC-------cceEEeccCCCCEEEEEEcCCCCE-EEEEeCCCCEEEEeCCC
Q psy11876          2 IFLD-TRVFATCSDDTTIALWDARNLK-------TRVRTLQGHSNWVKNIEFSSKDNL-LVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~-~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~   68 (68)
                      ++|+ ++.+++|+.|+.+++|++....       .+...+.+|...|.+++|+|.+.. +++++.|+.+++||+++
T Consensus        82 fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t  157 (568)
T PTZ00420         82 FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN  157 (568)
T ss_pred             EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence            4564 6899999999999999986521       123456788899999999998754 57889999999999863

>KOG0273|consensus

Probab=99.43  E-value=3.3e-12  Score=63.98  Aligned_cols=61  Identities=28%  Similarity=0.542  Sum_probs=56.7

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..+++++.|+.+++|+... ..++..+..|+.+|.+++++|+++++++|+.|+.+.+|+.+
T Consensus       422 ~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             CceEEEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence            45789999999999999988 78888998999999999999999999999999999999865

>KOG0282|consensus

Probab=99.42  E-value=1.2e-12  Score=65.48  Aligned_cols=63  Identities=24%  Similarity=0.490  Sum_probs=57.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~   65 (68)
                      +|||++.+++|+.+|.+.+|+.++ ......+.+|...+..+.|+|. ...+++++-+|.|.+|+
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            789999999999999999999988 5667788889888999999996 47899999999999996

>KOG0313|consensus

Probab=99.41  E-value=1.4e-12  Score=63.83  Aligned_cols=66  Identities=30%  Similarity=0.627  Sum_probs=56.1

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCC--CcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNL--KTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+....+++|+.|..+++||.++.  ......+.+|.+.|..+.|+|.+ .++++++.|+++++||+|+
T Consensus       309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            345678999999999999999874  23456678999999999999964 7889999999999999874

>KOG0315|consensus

Probab=99.41  E-value=4.4e-12  Score=59.67  Aligned_cols=63  Identities=27%  Similarity=0.479  Sum_probs=53.1

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      -.+++..++|+.||.+++|+++. ......+ .+..+|..+..+|....++++..+|.|++||+.
T Consensus        92 ~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   92 QCDGRWMYTGSEDGTVKIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG  154 (311)
T ss_pred             eecCeEEEecCCCceEEEEeccC-cccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence            34788999999999999999987 3333333 466899999999999999999999999999975

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.39  E-value=1.6e-11  Score=65.36  Aligned_cols=62  Identities=27%  Similarity=0.480  Sum_probs=54.7

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.+++++.|+.+++|+... ......+.+|...|.+++|+| ++..+++++.|+.+++||++
T Consensus       544 ~~~~las~~~Dg~v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        544 IKSQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            467899999999999999987 556667888999999999997 67899999999999999976

>KOG0285|consensus

Probab=99.39  E-value=5.5e-12  Score=61.80  Aligned_cols=65  Identities=32%  Similarity=0.497  Sum_probs=59.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.|...+|++|+.|+.+++||+.+ +....+..+|...+..+++++...++++++.|+++..||+.
T Consensus       159 vdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  159 VDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             eCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            346678999999999999999988 67777888999999999999999999999999999999975

>PTZ00420 coronin; Provisional

Probab=99.39  E-value=1.9e-11  Score=63.19  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=51.8

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|++. .+++++.|+.+++|++.. ......+. +...+.+++|++++.++++++.|+.+++||+++
T Consensus       133 f~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        133 WNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK  198 (568)
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence            456554 467899999999999987 33344443 456789999999999999999999999999874

>KOG0322|consensus

Probab=99.37  E-value=2.3e-12  Score=60.94  Aligned_cols=64  Identities=28%  Similarity=0.393  Sum_probs=58.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +-||+..+++++.|+.+++|..++ ..+.....-|...+.+++|+|+...++.++.|.+|.+|++
T Consensus       259 IRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  259 IRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            457899999999999999999988 6777777778999999999999889999999999999986

>KOG0647|consensus

Probab=99.36  E-value=1.2e-11  Score=59.40  Aligned_cols=67  Identities=22%  Similarity=0.380  Sum_probs=55.2

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcce-EEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRV-RTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |+| ...++++++.|+.|++|+.+..+... .....+..++.+++|+.++..+++++-|+.+++||+.+
T Consensus        35 FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   35 FSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             eccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            667 56788899999999999997632222 33456888999999999999999999999999999863

>KOG0292|consensus

Probab=99.36  E-value=9.3e-12  Score=66.48  Aligned_cols=63  Identities=29%  Similarity=0.628  Sum_probs=58.2

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.-..|.++|.|..|++|++.+ +.++....+|...|-+.+|+|...++++++.|.++++||+.
T Consensus       103 heyPWIlSASDDQTIrIWNwqs-r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen  103 HEYPWILSASDDQTIRIWNWQS-RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             CCCceEEEccCCCeEEEEeccC-CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence            3557899999999999999998 78899999999999999999988899999999999999975

>KOG0286|consensus

Probab=99.36  E-value=1.9e-11  Score=58.56  Aligned_cols=66  Identities=33%  Similarity=0.558  Sum_probs=59.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .|.+.+.|++++-|....+||+++ ......+.+|...|.++.++| +++.+++++-|+..++||++.
T Consensus       152 ~f~dD~~ilT~SGD~TCalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  152 RFLDDNHILTGSGDMTCALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             EEcCCCceEecCCCceEEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            356778899999999999999998 677888999999999999999 789999999999999999873

>KOG0277|consensus

Probab=99.36  E-value=1.3e-11  Score=58.20  Aligned_cols=66  Identities=29%  Similarity=0.520  Sum_probs=55.8

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++| ..+.+++++.|+.+++|+++..++... +..|..++.+..|+. +.+.+++++.|+.++.||+++
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence            345 468999999999999999987555444 888998999999987 678999999999999999873

>KOG0264|consensus

Probab=99.35  E-value=9.8e-12  Score=61.61  Aligned_cols=64  Identities=23%  Similarity=0.552  Sum_probs=54.8

Q ss_pred             cCcEEEEeeCCCCEEEeecCC-CCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARN-LKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +...|++++.|+.+.+||.+. ...+.....+|..++++++|+| .+..+++++.|+++.+||+|+
T Consensus       239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn  304 (422)
T KOG0264|consen  239 HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN  304 (422)
T ss_pred             chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence            456789999999999999984 2455666778999999999999 468889999999999999874

>KOG0265|consensus

Probab=99.34  E-value=9.6e-12  Score=59.58  Aligned_cols=64  Identities=30%  Similarity=0.640  Sum_probs=54.7

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      ..|++.+++++.|..++.||.++ +........|..-++.+.-+..+ .++.+++.|+++++||++
T Consensus        99 ~~d~s~i~S~gtDk~v~~wD~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen   99 MRDGSHILSCGTDKTVRGWDAET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             ccCCCEEEEecCCceEEEEeccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence            46889999999999999999998 77788889999888888744444 567788899999999987

>KOG0273|consensus

Probab=99.34  E-value=3.6e-11  Score=60.40  Aligned_cols=62  Identities=26%  Similarity=0.472  Sum_probs=56.4

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +...|++++.|+.++++.+.. ..|..++.+|.++|..+.|.|.+.++++++.|+++++|.+.
T Consensus       328 ~~~~F~ts~td~~i~V~kv~~-~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~  389 (524)
T KOG0273|consen  328 SNDEFATSSTDGCIHVCKVGE-DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG  389 (524)
T ss_pred             cCceEeecCCCceEEEEEecC-CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence            445789999999999999977 78899999999999999999999999999999999999854

>KOG0284|consensus

Probab=99.32  E-value=9.6e-12  Score=61.54  Aligned_cols=63  Identities=33%  Similarity=0.522  Sum_probs=58.4

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |....+++++.|+.|++||.++ ..++.....|...|..+.|+++++++++++.|..++++|++
T Consensus       232 P~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  232 PTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR  294 (464)
T ss_pred             CccceeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence            4567899999999999999998 78888889999999999999999999999999999999986

>KOG0645|consensus

Probab=99.32  E-value=6.6e-11  Score=56.23  Aligned_cols=66  Identities=33%  Similarity=0.520  Sum_probs=57.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC-CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL-KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+|.++.+++++.|..+.+|.-... -.....+.+|+++|.+++|++.+.++++|+.|..+=+|...
T Consensus        69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            5789999999999999999987532 24577789999999999999999999999999999999753

>KOG0310|consensus

Probab=99.32  E-value=3e-11  Score=60.62  Aligned_cols=62  Identities=27%  Similarity=0.615  Sum_probs=53.9

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      ++..+.+|+.|+.+++|++.+ ......+.+|+..|.+.+++|.. ..+++|+.|+++++||.+
T Consensus       122 d~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  122 DNTMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             CCeEEEecCCCceEEEEEcCC-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            567889999999999999987 34466788999999999999964 688999999999999976

>KOG0276|consensus

Probab=99.32  E-value=6e-12  Score=65.07  Aligned_cols=62  Identities=31%  Similarity=0.583  Sum_probs=56.7

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |...+++|+.|..+++||.++ +.++.++.+|..-|..+.++|.-..+++|+.||++++|.-.
T Consensus       196 dkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  196 DKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK  257 (794)
T ss_pred             CcceEEecCCCceEEEeecch-HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence            446899999999999999998 78898999999999999999999999999999999999743

>KOG0275|consensus

Probab=99.32  E-value=3.3e-12  Score=62.18  Aligned_cols=66  Identities=24%  Similarity=0.339  Sum_probs=53.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc-------ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT-------RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |+||++++++|+.||.+.+|+..+.+.       ..-.+.-+...|.++.|+.+...+++++.||.|.+|.++
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence            789999999999999999999876211       111122356789999999999999999999999999865

>KOG0772|consensus

Probab=99.31  E-value=7.5e-12  Score=63.54  Aligned_cols=67  Identities=25%  Similarity=0.498  Sum_probs=54.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC--CcceEEeccCCC--CEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL--KTRVRTLQGHSN--WVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++++..|++|..||.|.+|+....  ......-.+|..  .+.++.|+++++.+++-+.|.++++||+++
T Consensus       325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence            5678999999999999999997542  112333445665  789999999999999999999999999874

>KOG0299|consensus

Probab=99.31  E-value=1.3e-11  Score=61.58  Aligned_cols=66  Identities=26%  Similarity=0.497  Sum_probs=59.9

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++|++++++|..|..+.+|+.++ ...+..+.+|...|.+++|..+...+.+++.|+.+.+|++.
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID  274 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCccceeeeecCCceEEEehh
Confidence            4689999999999999999999998 67777889999999999998888888999999999999864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.31  E-value=4.8e-11  Score=41.64  Aligned_cols=37  Identities=41%  Similarity=0.750  Sum_probs=34.3

Q ss_pred             ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876         29 RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      +...+.+|...+.+++|+|++..+++++.|+.+++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1034|consensus

Probab=99.31  E-value=6.7e-11  Score=57.46  Aligned_cols=61  Identities=25%  Similarity=0.580  Sum_probs=53.8

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEE---eccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRT---LQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+++++++.|..+++|++++ ..++..   ..+|...|.++.|++++..+++++.|..+++|++.
T Consensus       148 ~qlvls~SkD~svRlwnI~~-~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  148 PQLVLSASKDHSVRLWNIQT-DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             CcEEEEecCCceEEEEeccC-CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            47899999999999999988 555544   45789999999999999999999999999999875

>KOG1332|consensus

Probab=99.30  E-value=1e-10  Score=55.04  Aligned_cols=62  Identities=27%  Similarity=0.551  Sum_probs=54.0

Q ss_pred             CcEEEEeeCCCCEEEeecCCCC--cceEEeccCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLK--TRVRTLQGHSNWVKNIEFSS--KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..|++++.|+.|+++..+.+.  .....+.+|+.+++.++|..  .+..+++++.|+++.+|...
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~   88 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE   88 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence            5689999999999999998643  45677899999999999965  58999999999999999754

>KOG0281|consensus

Probab=99.29  E-value=5.9e-12  Score=61.67  Aligned_cols=62  Identities=24%  Similarity=0.560  Sum_probs=50.5

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .|...+++|..|+.+++||... ..+.....+|++.|.++++  +.+.+++|+.|.++++||.++
T Consensus       205 YDD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  205 YDDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             ecchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC
Confidence            3556788999999999999877 5677778889988888877  556888999999999998753

>KOG0318|consensus

Probab=99.29  E-value=4.4e-11  Score=60.81  Aligned_cols=66  Identities=14%  Similarity=0.288  Sum_probs=56.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++||+.+|+++...+.+.+|+............-|...|.+++|+|++.++++++.|-.+.+|++.
T Consensus       495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            688999999999999999999977322232334488999999999999999999999999999875

>KOG0292|consensus

Probab=99.29  E-value=1.9e-11  Score=65.38  Aligned_cols=65  Identities=23%  Similarity=0.479  Sum_probs=59.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |.|.+.+|++|+.|..|++|+... ++++.+..+|-..|..+.|++.-.++++++.|.+|++|+.+
T Consensus        59 FH~~qplFVSGGDDykIkVWnYk~-rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq  123 (1202)
T KOG0292|consen   59 FHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ  123 (1202)
T ss_pred             ecCCCCeEEecCCccEEEEEeccc-ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence            556788999999999999999988 78888999999999999999999999999999999999865

>KOG0293|consensus

Probab=99.28  E-value=4.3e-11  Score=59.62  Aligned_cols=66  Identities=30%  Similarity=0.490  Sum_probs=57.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC--cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK--TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |+++|..+|+++.|...-+|......  ....++.+|..+|..+.|+|+.+++++|+.+.-+.+||..
T Consensus       232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~  299 (519)
T KOG0293|consen  232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD  299 (519)
T ss_pred             EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence            67899999999999999999875421  2355778999999999999999999999999999999975

>KOG0302|consensus

Probab=99.28  E-value=5.9e-11  Score=58.45  Aligned_cols=61  Identities=30%  Similarity=0.610  Sum_probs=52.8

Q ss_pred             cEEEEeeCCCCEEEeecCCC--CcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNL--KTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+|++|+.||.+++|+++..  ..++..+.-|..+|.++.|+|. ...++.++.|.++.+||+.
T Consensus       315 ~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  315 PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            47999999999999999852  4567788889999999999995 4778888899999999974

>KOG0308|consensus

Probab=99.27  E-value=6.9e-11  Score=61.31  Aligned_cols=64  Identities=23%  Similarity=0.514  Sum_probs=56.6

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+++..|++|+.++.+++|+.++ ...+-.+.+|+.-|..+..+.+++.+++++.|++|++||+.
T Consensus       180 N~t~t~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  180 NQTGTIIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             CCcceEEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence            45567899999999999999998 45566777999999999999999999999999999999975

>KOG0973|consensus

Probab=99.27  E-value=5.8e-11  Score=63.66  Aligned_cols=67  Identities=28%  Similarity=0.551  Sum_probs=57.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCC------CC-----------cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEE
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARN------LK-----------TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      +++||+.+|+|+.|..+.+|+...      .+           +....+.+|...|..+.|+|++.++++++.|+++.+|
T Consensus        77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence            678999999999999999998762      11           2455678899999999999999999999999999999


Q ss_pred             eCCC
Q psy11876         65 DINK   68 (68)
Q Consensus        65 ~~~~   68 (68)
                      +.++
T Consensus       157 n~~t  160 (942)
T KOG0973|consen  157 NAKT  160 (942)
T ss_pred             cccc
Confidence            8753

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.26  E-value=3.5e-10  Score=52.83  Aligned_cols=65  Identities=32%  Similarity=0.553  Sum_probs=55.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.+++++.++.+.+|+... .........+...+..+.|.+++..+++++.++.+.+|++.
T Consensus        17 ~~~~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200          17 FSPDGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             EcCCCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            457788999999999999999976 44555667788888899999998899999999999999975

>KOG0277|consensus

Probab=99.26  E-value=1.5e-10  Score=54.79  Aligned_cols=61  Identities=38%  Similarity=0.677  Sum_probs=53.5

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..+++++.|+.|++|+..- ...+.++.+|...|...+|+|. ...+++++.|+++++||++
T Consensus       117 r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen  117 RRIFLTSSWDGTIKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             ceeEEeeccCCceEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            45678889999999999876 5667789999999999999995 6889999999999999976

>KOG0291|consensus

Probab=99.26  E-value=9e-11  Score=61.82  Aligned_cols=63  Identities=21%  Similarity=0.436  Sum_probs=54.5

Q ss_pred             ecCcEEEEeeCC-CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDD-TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..|..++.|+.. |.+.+|+++. ..-+...++|...+.+++++|+++.+++|+.|+++++||.+
T Consensus       317 ~tGDWiA~g~~klgQLlVweWqs-EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~  380 (893)
T KOG0291|consen  317 STGDWIAFGCSKLGQLLVWEWQS-ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ  380 (893)
T ss_pred             ccCCEEEEcCCccceEEEEEeec-cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence            347788887766 7889999987 45567788999999999999999999999999999999975

>KOG0296|consensus

Probab=99.26  E-value=1.2e-10  Score=57.09  Aligned_cols=62  Identities=23%  Similarity=0.375  Sum_probs=57.2

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +...++++..+|.++.|+.++ ++....+.+|...|..++++|+.+++++.+.|++.++|+..
T Consensus       337 ~t~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  337 NTDYLLTACANGKVRQWDART-GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CcchheeeccCceEEeeeccc-cceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            456788999999999999999 78899999999999999999999999999999999999875

>KOG0645|consensus

Probab=99.26  E-value=1.2e-10  Score=55.39  Aligned_cols=65  Identities=23%  Similarity=0.424  Sum_probs=56.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCC--CCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+.+|++|+++++|+.+.+|....  .-.+...+..|...|..+.|+|...++++++.|.+|++|.-
T Consensus       113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence            567899999999999999999873  22356667889999999999998889999999999999964

>KOG0296|consensus

Probab=99.26  E-value=1.9e-10  Score=56.43  Aligned_cols=66  Identities=24%  Similarity=0.424  Sum_probs=59.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.|+.+.+++|+.|-.-.+|++.+ ......+.+|...|.++.|+.++.++++++.+|.+++|+..+
T Consensus        72 l~P~~~l~aTGGgDD~AflW~~~~-ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   72 LHPNNNLVATGGGDDLAFLWDIST-GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             eCCCCceEEecCCCceEEEEEccC-CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence            457889999999999999999988 456778899999999999999999999999999999998753

>KOG4283|consensus

Probab=99.26  E-value=1.4e-10  Score=56.01  Aligned_cols=60  Identities=32%  Similarity=0.504  Sum_probs=53.4

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+++|..+..|+++|+.. +.....+.+|...|.++.|+|.. -.+++++-|+.+++||++.
T Consensus       160 LiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  160 LIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRR  220 (397)
T ss_pred             EEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeec
Confidence            678999999999999988 77788899999999999999976 4567899999999999873

>KOG0305|consensus

Probab=99.25  E-value=5.3e-11  Score=60.42  Aligned_cols=65  Identities=26%  Similarity=0.431  Sum_probs=55.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEe--CCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAG--FDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~i~~~~~~   67 (68)
                      .+++++.+++|+.|+.+.+|+... ..+...+..|...|..++|+| +..++++|+  .|+.+++|+..
T Consensus       309 ws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~  376 (484)
T KOG0305|consen  309 WSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN  376 (484)
T ss_pred             ECCCCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence            367899999999999999999966 567888899999999999999 456777765  47999999864

>KOG0295|consensus

Probab=99.25  E-value=1.1e-10  Score=57.24  Aligned_cols=65  Identities=23%  Similarity=0.543  Sum_probs=60.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +-|.+..+++++.|..++.|+..+ +.+++++.+|...+.-++...++.++++++.|.++++|-..
T Consensus       201 f~P~gd~ilS~srD~tik~We~~t-g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~  265 (406)
T KOG0295|consen  201 FLPLGDHILSCSRDNTIKAWECDT-GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA  265 (406)
T ss_pred             EEecCCeeeecccccceeEEeccc-ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence            557889999999999999999998 78999999999999999999999999999999999999643

>KOG1007|consensus

Probab=99.25  E-value=8.9e-11  Score=56.43  Aligned_cols=64  Identities=30%  Similarity=0.619  Sum_probs=55.5

Q ss_pred             eecC-cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeC
Q psy11876          3 FLDT-RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~   66 (68)
                      .|+. ..+++|+.|+.+++||.+....++....+|..+++++.++|.. +++.+++.|..+.+|..
T Consensus       223 Npnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  223 NPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             CCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            4554 4689999999999999987678888899999999999999964 78889999999999864

>KOG0270|consensus

Probab=99.25  E-value=9.8e-11  Score=58.41  Aligned_cols=61  Identities=25%  Similarity=0.476  Sum_probs=55.2

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+.+++|+.|..|.+|++.. ..+...+..|...|.++.|+|. ...+++|+.|+++.+.|.|
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             ceeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            36899999999999999988 7788888889999999999995 6888999999999999987

>KOG0316|consensus

Probab=99.25  E-value=6.1e-11  Score=55.67  Aligned_cols=65  Identities=28%  Similarity=0.547  Sum_probs=58.9

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .-+|++..+++.|..+++|+... ...+.++.+|..+|...+.+.++..+++|+.|..+.+||+.+
T Consensus        26 N~dGnY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   26 NVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             ccCCCEEEEcCCCceEEeecccc-cceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            44789999999999999999977 678889999999999999999999999999999999999764

>KOG0288|consensus

Probab=99.25  E-value=5.5e-11  Score=58.99  Aligned_cols=64  Identities=17%  Similarity=0.305  Sum_probs=52.7

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEec-cCCC-CEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ-GHSN-WVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      +|+|++.++++|+.||.+++|+..+ .+...... .+.. .+.++.|+|-+..+++++.+..+.+|.
T Consensus       394 vfSpd~~YvaAGS~dgsv~iW~v~t-gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSADGSVYIWSVFT-GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EECCCCceeeeccCCCcEEEEEccC-ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            4789999999999999999999987 44433333 3333 689999999999999999999999984

>KOG1445|consensus

Probab=99.24  E-value=1.5e-11  Score=64.11  Aligned_cols=61  Identities=30%  Similarity=0.464  Sum_probs=54.3

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ..+++++.|..|++||+.+ ......+.+|...|..++|+|+++.+++.+.|+++++|..++
T Consensus       691 dvLa~asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  691 DVLAVASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             hHhhhhhccceeeeeehhh-hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence            4578899999999999987 555667889999999999999999999999999999998653

>KOG0281|consensus

Probab=99.24  E-value=4.2e-11  Score=58.82  Aligned_cols=60  Identities=33%  Similarity=0.646  Sum_probs=45.2

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..++++++.|..+++|++.+ ...+.++.+|..++.++++  .++++++|+.|.+|++||++
T Consensus       329 d~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  329 DDKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE  388 (499)
T ss_pred             ccceEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecc
Confidence            456788888888888888877 5566677778877777766  66778888888888888764

>KOG0771|consensus

Probab=99.24  E-value=3.8e-11  Score=59.24  Aligned_cols=64  Identities=27%  Similarity=0.424  Sum_probs=55.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++.++..++++..||.+++|+... .........|...|..+.|+|++..+++.+.+ ..++|+.+
T Consensus       152 f~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  152 FNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             EcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence            567889999999999999999766 44555566788899999999999999999988 99999875

>KOG0278|consensus

Probab=99.23  E-value=5.7e-12  Score=59.45  Aligned_cols=67  Identities=15%  Similarity=0.366  Sum_probs=58.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |+.|.+.+++|+++..+++++++....+...+.+|...|..+.|....+.+++...|+++++||.++
T Consensus       108 f~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT  174 (334)
T KOG0278|consen  108 FSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT  174 (334)
T ss_pred             ecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence            5668889999999999999999876677778889999999999998777788878999999999874

>KOG1446|consensus

Probab=99.23  E-value=4e-10  Score=54.21  Aligned_cols=40  Identities=25%  Similarity=0.601  Sum_probs=36.2

Q ss_pred             cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         28 TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+..+.+|...|..++.+|.+..+++++.|+++++||++
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR  130 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR  130 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec
Confidence            4566778999999999999998999999999999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.23  E-value=5e-10  Score=59.86  Aligned_cols=63  Identities=30%  Similarity=0.460  Sum_probs=53.2

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++..+++|+.|+.+++|+.+....+.....+|...+..+.|. ++..+++++.|+.+++||++
T Consensus       628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            4678999999999999999976444566677899999999996 56788999999999999975

>KOG0640|consensus

Probab=99.22  E-value=1e-10  Score=56.80  Aligned_cols=68  Identities=25%  Similarity=0.438  Sum_probs=57.6

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCC------C-----------CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEE
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARN------L-----------KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT   63 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   63 (68)
                      .+++||+++++|+.|-.|++.+.+.      .           ...+.++..|..+|..+.|+|....+++++.|+++++
T Consensus       119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl  198 (430)
T KOG0640|consen  119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL  198 (430)
T ss_pred             eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence            4789999999999999999998751      0           1235567788999999999999999999999999999


Q ss_pred             EeCCC
Q psy11876         64 WDINK   68 (68)
Q Consensus        64 ~~~~~   68 (68)
                      +|+.+
T Consensus       199 FDfsK  203 (430)
T KOG0640|consen  199 FDFSK  203 (430)
T ss_pred             Eeccc
Confidence            99863

>KOG0306|consensus

Probab=99.21  E-value=7.3e-11  Score=62.11  Aligned_cols=64  Identities=27%  Similarity=0.493  Sum_probs=58.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++||+..+++|+.|..|++|-+.. +-+-..+.+|...|.++.|.|+...+.+++.|+.++.||-
T Consensus       558 IS~DSklivTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg  621 (888)
T KOG0306|consen  558 ISPDSKLIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG  621 (888)
T ss_pred             ccCCcCeEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence            578999999999999999999876 5666678899999999999999999999999999999974

>KOG2096|consensus

Probab=99.20  E-value=1.8e-10  Score=56.09  Aligned_cols=67  Identities=27%  Similarity=0.396  Sum_probs=56.7

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCC-------CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNL-------KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++|+|++++++....-+++|++--.       -.....+.+|...|..++|+++++..++.+.||+.++||..
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            47899999999999999999987310       12344678999999999999999999999999999999853

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.19  E-value=7.2e-10  Score=51.76  Aligned_cols=63  Identities=37%  Similarity=0.611  Sum_probs=53.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      +.+++..+++++.++.+.+|+... ......+..+...+..++|++++..+++++.++.+.+|+
T Consensus       227 ~~~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         227 FSPDGYLLASGSEDGTIRVWDLRT-GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCCcEEEEEcCCCcEEEEEcCC-ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            345677888888899999999976 455666667888899999999999999999999999996

>KOG0649|consensus

Probab=99.18  E-value=5.1e-10  Score=52.92  Aligned_cols=64  Identities=17%  Similarity=0.331  Sum_probs=51.9

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |..+-+..+.-|+.++.|++++ +.....+.+|++.++++........+.+++.||++++||.++
T Consensus       124 P~enSi~~AgGD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  124 PSENSILFAGGDGVIYQVDLED-GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT  187 (325)
T ss_pred             cCCCcEEEecCCeEEEEEEecC-CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence            3333344444689999999998 778889999999999998766677899999999999999764

>KOG0647|consensus

Probab=99.18  E-value=5.6e-10  Score=53.85  Aligned_cols=64  Identities=23%  Similarity=0.330  Sum_probs=54.4

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC--CEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD--NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~   68 (68)
                      +-++..+++|+.|+.+++|++.. . .......|..++..++|.+..  ..+++++.|.+++.||.++
T Consensus        81 sddgskVf~g~~Dk~~k~wDL~S-~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~  146 (347)
T KOG0647|consen   81 SDDGSKVFSGGCDKQAKLWDLAS-G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS  146 (347)
T ss_pred             ccCCceEEeeccCCceEEEEccC-C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence            44788999999999999999987 3 355667799999999998865  4889999999999999874

>KOG0643|consensus

Probab=99.18  E-value=8.9e-10  Score=52.58  Aligned_cols=65  Identities=23%  Similarity=0.428  Sum_probs=58.5

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ..+|.+|.++..|....+|-..+ +..+.++.+|+..|+++...-+...+++++.|.++++||+.+
T Consensus        19 N~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen   19 NREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            45788999999999999998866 677889999999999999988899999999999999999863

>KOG3914|consensus

Probab=99.18  E-value=2e-10  Score=56.59  Aligned_cols=67  Identities=21%  Similarity=0.298  Sum_probs=53.5

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++||+++|+++..|..|++-.+......-..+.+|...|..+++-++ ..+++++.|+++++||+++
T Consensus       158 avS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  158 AVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             eecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence            468999999999999999997776533334446689999988887554 4588999999999999864

>KOG0274|consensus

Probab=99.17  E-value=6.3e-10  Score=57.50  Aligned_cols=64  Identities=30%  Similarity=0.574  Sum_probs=56.0

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ..++..+++|+.|+.|++|++.. ..++..+.+|..+|.++.+... ..+.+++.|+++++||+++
T Consensus       338 ~~~~~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  338 QLDEPLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT  401 (537)
T ss_pred             EecCCEEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCc
Confidence            34678999999999999999987 7888899999999999977554 7899999999999999864

>KOG1407|consensus

Probab=99.17  E-value=1.4e-10  Score=55.03  Aligned_cols=63  Identities=29%  Similarity=0.326  Sum_probs=56.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      +.|+|+.|++|+.|-.+.+||... ..+...+.-+..+|..+.|+.+++++++++.|..|-+=+
T Consensus       197 f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~  259 (313)
T KOG1407|consen  197 FDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE  259 (313)
T ss_pred             ECCCCceEeeccccceeeccChhH-hhhheeeccccCceEEEEeccCcceeeccCccceEEeEe
Confidence            678999999999999999999987 577778888899999999999999999999998876543

>KOG0306|consensus

Probab=99.17  E-value=5.6e-10  Score=58.99  Aligned_cols=64  Identities=22%  Similarity=0.327  Sum_probs=58.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +|||+.+++.+-.|+.+++|-+.+ ........+|.-+|.++..+|++.++++|+.|..+.+|.+
T Consensus       516 ~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL  579 (888)
T KOG0306|consen  516 VSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL  579 (888)
T ss_pred             EcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence            689999999999999999999987 4556677899999999999999999999999999999965

>KOG0269|consensus

Probab=99.17  E-value=2.1e-10  Score=60.49  Aligned_cols=63  Identities=24%  Similarity=0.515  Sum_probs=53.9

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.+.+++|++||.|+.||++. .....++.+....+..++|+|. +..+++....|.+++||+++
T Consensus       145 ep~iliSGSQDg~vK~~DlR~-~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq  208 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRS-KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ  208 (839)
T ss_pred             CccEEEecCCCceEEEEeeec-ccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccC
Confidence            457899999999999999987 4455567778888999999995 68889999999999999984

>KOG0294|consensus

Probab=99.16  E-value=8.5e-10  Score=53.50  Aligned_cols=65  Identities=35%  Similarity=0.504  Sum_probs=56.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEE--cCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF--SSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+.+++.+++|..|..+.+||... ..+...+.+|..+|..+..  .|.+.++++.+.||.|.+||++
T Consensus       215 ~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  215 TFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             eecCCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            355788999999999999999987 6778889999999988873  4577899999999999999975

>KOG1063|consensus

Probab=99.14  E-value=2.9e-10  Score=59.42  Aligned_cols=67  Identities=21%  Similarity=0.359  Sum_probs=56.0

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCC---cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLK---TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +|+||+++|++.++|....+|......   ........|+.-|+...|+|++..+++++.|.++.+|...
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence            478999999999999999999875421   1222366799999999999999999999999999999754

>KOG0283|consensus

Probab=99.13  E-value=5.9e-10  Score=58.64  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=53.3

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |.| |.++|++|+.|+.+++|.+.. .. +.....-..-|.++++.|+|+..+.|+.+|.+++|+.+
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d-~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISD-KK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCc-Ce-eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence            556 779999999999999999976 33 33444455778999999999999999999999999754

>KOG1272|consensus

Probab=99.13  E-value=1.6e-10  Score=58.24  Aligned_cols=65  Identities=20%  Similarity=0.373  Sum_probs=57.2

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .|-.-.+-.|-.+|.|.+|.... ..++..+.+|..+|.++++.+++++.++.+.|+.+.+||++.
T Consensus       260 NP~NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  260 NPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             CCccceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence            34455788899999999999876 677778889999999999999999999999999999999873

>KOG0973|consensus

Probab=99.13  E-value=6.4e-10  Score=59.90  Aligned_cols=63  Identities=19%  Similarity=0.486  Sum_probs=58.5

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +|++.++++++.|+.|-+|+..+. .....+.+|...|..+.|.|-++++++.+.|+++++|+.
T Consensus       138 sp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt  200 (942)
T KOG0973|consen  138 SPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT  200 (942)
T ss_pred             CCCccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEc
Confidence            578999999999999999999984 667788999999999999999999999999999999974

>KOG0275|consensus

Probab=99.12  E-value=1.5e-10  Score=56.59  Aligned_cols=65  Identities=20%  Similarity=0.426  Sum_probs=58.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |+.|+..+.+++.|..+++--+.. ++....+.+|...+....|.+++..+++++.|+++++|+..
T Consensus       314 FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K  378 (508)
T KOG0275|consen  314 FSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK  378 (508)
T ss_pred             EccCcchhhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc
Confidence            456888999999999999988877 67788899999999999999999999999999999999865

>KOG0310|consensus

Probab=99.12  E-value=2.2e-10  Score=57.65  Aligned_cols=66  Identities=23%  Similarity=0.435  Sum_probs=56.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |-.||..+++|+..|.+++++..+ +..+..+.+|+.+++...|+|+ +..+++++.|+.+++||+.+
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             eecCCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            345899999999999999999655 5677788899999999999996 57788899999999999763

>KOG0294|consensus

Probab=99.08  E-value=1.4e-09  Score=52.74  Aligned_cols=59  Identities=22%  Similarity=0.465  Sum_probs=53.1

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +.+.+|+.||.|.+|+... =.....+.+|...|..++.+|.+++.++.+.|+.+++|++
T Consensus        98 shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen   98 SHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             hheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence            3799999999999999976 3556778899999999999999999999999999999986

>KOG1539|consensus

Probab=99.08  E-value=2.3e-10  Score=60.71  Aligned_cols=61  Identities=31%  Similarity=0.571  Sum_probs=54.2

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ..++.+..|-.|.++|..+ .+....+.+|.+.+..++|+|+++++++++.|++|++||+.+
T Consensus       547 ~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  547 DLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             hhhhhhcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            4567777788999999987 677888999999999999999999999999999999999753

>KOG0303|consensus

Probab=99.07  E-value=8.4e-10  Score=54.89  Aligned_cols=60  Identities=23%  Similarity=0.439  Sum_probs=52.4

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.+++++.|+.+.+|+..+ +.....+. |...|.++.|+.++.++.+.+.|..+++||.++
T Consensus       145 NVLlsag~Dn~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             hhHhhccCCceEEEEeccC-CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            5678889999999999988 55555555 999999999999999999999999999999874

>KOG0303|consensus

Probab=99.07  E-value=5.7e-10  Score=55.46  Aligned_cols=64  Identities=27%  Similarity=0.531  Sum_probs=54.3

Q ss_pred             cCcEEEEeeCCCCEEEeecCCC------CcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNL------KTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   68 (68)
                      |.+.|++|+.|..+.+|.+...      ..++..+.+|...|..++|+|. .+.+++++.|.++.+|++.+
T Consensus        93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t  163 (472)
T KOG0303|consen   93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT  163 (472)
T ss_pred             CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence            5678999999999999998642      2467788899999999999995 57788889999999999753

>KOG1274|consensus

Probab=99.05  E-value=4.9e-09  Score=56.29  Aligned_cols=65  Identities=26%  Similarity=0.523  Sum_probs=58.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++-+|.+++.|+.|-.|++.+... ........+|..+|.++.++|++..+++.+-+|.+.+|+++
T Consensus       104 v~g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen  104 VSGSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             EecCCcEEEeecCceeEEEEeccc-cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            455788999999999999998877 45567788999999999999999999999999999999976

>KOG0267|consensus

Probab=99.05  E-value=1.6e-10  Score=60.60  Aligned_cols=65  Identities=25%  Similarity=0.490  Sum_probs=59.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+|.+++.+..|..+++|+... +.....+..|...+..+.++|..-++.+++.|+++++||++
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             ecCCCceeeccCCcceeeeecccc-cccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            679999999999999999999977 66677788899999999999988899999999999999986

>KOG0308|consensus

Probab=99.05  E-value=2.6e-09  Score=55.75  Aligned_cols=65  Identities=28%  Similarity=0.343  Sum_probs=57.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++.||..+++++.|+.|++|++.. ..++.++..|...++++..+|.-..+.+|+.|+.+..-|++
T Consensus       221 ~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  221 VNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             EcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            467899999999999999999987 67888899999999999999888899999999998877665

>KOG0646|consensus

Probab=99.05  E-value=9.3e-10  Score=55.30  Aligned_cols=63  Identities=16%  Similarity=0.314  Sum_probs=56.3

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +|+|.+++.|...+.+++|.+.+ +..+..+..|-..+.++.++.++.++++++.||.+.+|++
T Consensus        90 ~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l  152 (476)
T KOG0646|consen   90 SNLGYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL  152 (476)
T ss_pred             CCCceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence            56788888887899999999988 6777778889889999999999999999999999999975

>KOG0290|consensus

Probab=99.05  E-value=2.6e-09  Score=51.60  Aligned_cols=62  Identities=31%  Similarity=0.560  Sum_probs=50.1

Q ss_pred             cEEEEeeCCCCEEEeecCCCC-----------------------------------------------cceEEeccCCCC
Q psy11876          7 RVFATCSDDTTIALWDARNLK-----------------------------------------------TRVRTLQGHSNW   39 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~   39 (68)
                      +.|++.+.||.++++|++...                                               .++..+..|...
T Consensus       210 ~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~  289 (364)
T KOG0290|consen  210 DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS  289 (364)
T ss_pred             ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc
Confidence            678999999999999986321                                               233345578899


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876         40 VKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      |+.++|.|.. .++.+++.|.++.+||+++
T Consensus       290 VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ccceEecCCCCceeeecCCcceEEEEeccc
Confidence            9999999964 7899999999999999864

>KOG1446|consensus

Probab=99.03  E-value=1.5e-08  Score=48.98  Aligned_cols=66  Identities=21%  Similarity=0.327  Sum_probs=52.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCE---EEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWV---KNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++||..+..+...+.+.+.+.-. +.....+..+...-   ....+.|+++.+++++.||++.+|++++
T Consensus       195 FS~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  195 FSPDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             EcCCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence            688999999999999999998876 45555555554322   4667899999999999999999998753

>KOG1036|consensus

Probab=99.02  E-value=8.9e-09  Score=49.78  Aligned_cols=63  Identities=21%  Similarity=0.362  Sum_probs=50.1

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |.+...+++|+.|+.++.+|+.+  .....+..|..++.++...+....+++++.|+++.+||.+
T Consensus        62 F~d~~~~~~G~~dg~vr~~Dln~--~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   62 FADESTIVTGGLDGQVRRYDLNT--GNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             ccCCceEEEeccCceEEEEEecC--CcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence            34555677777788888877765  2344566788899999999888899999999999999987

>KOG0643|consensus

Probab=99.02  E-value=2.4e-09  Score=51.15  Aligned_cols=66  Identities=21%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .|-+..|++|-.+|.|..|+.++....+.....|...+..++++++..++++++.|.+..+||.++
T Consensus       156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence            356778999999999999999884445555677888999999999999999999999999999753

>KOG0301|consensus

Probab=99.01  E-value=7.2e-09  Score=54.43  Aligned_cols=61  Identities=34%  Similarity=0.693  Sum_probs=53.4

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .++..|++++.||.|+.|+..  +..+....+|++.+.+++..+....+++++.|+++++|+.
T Consensus       188 l~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  188 LDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             ecCCCeEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence            455678999999999999994  4667888999999999998888889999999999999975

>KOG0641|consensus

Probab=99.01  E-value=8.7e-09  Score=48.58  Aligned_cols=65  Identities=23%  Similarity=0.371  Sum_probs=59.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.|.++.+++|-.|....+|+++- ..++..+..|...+.++.|+|.-.++.+++.|..|++-|++
T Consensus       239 vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  239 VDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             ECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            457889999999999999999987 67888899999999999999999999999999999998764

>KOG0274|consensus

Probab=99.01  E-value=8.6e-09  Score=53.49  Aligned_cols=60  Identities=30%  Similarity=0.643  Sum_probs=47.2

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ....+.+|+.|..|++|++.+ +..+....+|..+|.++...  +..+++++.|+++.+|+++
T Consensus       300 ~~~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  300 DPFLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             cCceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            344567778888888888876 56677777788888888875  6788888889999999864

>KOG0313|consensus

Probab=99.01  E-value=1e-08  Score=50.88  Aligned_cols=61  Identities=25%  Similarity=0.479  Sum_probs=53.4

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +..+|++++.|+.+++||.+....+++.+.+|...+.++.|... ..+++|+.|.+++++.-
T Consensus       357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKG  417 (423)
T ss_pred             CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEecc
Confidence            45789999999999999999856689999999999999999654 47899999999999864

>KOG0300|consensus

Probab=99.00  E-value=5.2e-09  Score=51.30  Aligned_cols=65  Identities=32%  Similarity=0.575  Sum_probs=53.9

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .|+.+++++++.|...++||++..-..+..+++|...|.+..|..+. .+++++.|.++++||+++
T Consensus       323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeecc
Confidence            35677899999999999999986444567899999999998887654 578899999999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.98  E-value=3.1e-08  Score=45.63  Aligned_cols=63  Identities=24%  Similarity=0.456  Sum_probs=46.5

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC------CCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF------DGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~   67 (68)
                      .+|+|++++.++.+   |.+.+|+... ...+.... + ..+..++|+|++++++++..      |..+.+|++.
T Consensus       108 wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  108 WSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            57899999988754   5599999986 34443332 3 33678999999999987764      6778888764

>KOG0642|consensus

Probab=98.98  E-value=4.9e-09  Score=53.87  Aligned_cols=63  Identities=25%  Similarity=0.471  Sum_probs=54.4

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCC-------CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNL-------KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +-...+++++.|+.+.+|+++..       -.++..+.+|..+|.++.+.+.+..+.+++.|+.|+.|++
T Consensus       304 ~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~  373 (577)
T KOG0642|consen  304 PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL  373 (577)
T ss_pred             CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence            34567999999999999998321       2578889999999999999999999999999999999964

>KOG0772|consensus

Probab=98.96  E-value=5.4e-09  Score=53.66  Aligned_cols=63  Identities=30%  Similarity=0.614  Sum_probs=48.3

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEec-----cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQ-----GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +...|.+++.|+.+++|+..........+.     +..-.+...+|++++.++++++.||.|.+|+..
T Consensus       280 ~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~  347 (641)
T KOG0772|consen  280 NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG  347 (641)
T ss_pred             cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecC
Confidence            356799999999999999975332222222     233456788999999999999999999999964

>KOG1408|consensus

Probab=98.96  E-value=6.5e-10  Score=58.89  Aligned_cols=66  Identities=18%  Similarity=0.284  Sum_probs=56.9

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC---CCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS---KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++|+++.+++|...|.+++|++.. ........+|+.+|.++.++.   ...++++++.|+.|+++|..
T Consensus       466 ~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  466 AVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             EECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            3689999999999999999999987 455667889999999999975   34788999999999999864

>KOG0646|consensus

Probab=98.95  E-value=3.1e-08  Score=50.11  Aligned_cols=66  Identities=21%  Similarity=0.322  Sum_probs=54.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCC--------CCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARN--------LKTRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~   67 (68)
                      |+-|+.+|++|+.||.|.+|.+..        ...+...+..|...|..+...+.  ...+.+.+.|.++++||+.
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS  206 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS  206 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence            566899999999999999998732        13567788899999999887764  4688999999999999975

>KOG0305|consensus

Probab=98.94  E-value=3.7e-09  Score=54.01  Aligned_cols=62  Identities=32%  Similarity=0.478  Sum_probs=53.5

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++..+.+|+.++.+..++++..........+|..+|+.++|+++++++++++.|+.+.+||.
T Consensus       269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence            45678999999999999998633333347789999999999999999999999999999996

>KOG0267|consensus

Probab=98.93  E-value=4.4e-09  Score=55.53  Aligned_cols=65  Identities=26%  Similarity=0.498  Sum_probs=57.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.|-+.+++.|+.|...++||++. ..+...+.+|...+..+.+.|++++++.++.|..+.+||..
T Consensus       120 f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  120 FHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             eccceEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            345566789999999999999987 56788888899999999999999999999999999999974

>KOG0268|consensus

Probab=98.93  E-value=1.7e-09  Score=53.36  Aligned_cols=66  Identities=23%  Similarity=0.396  Sum_probs=59.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+|+.-.|.+|+.|..++.+|++....++....+|.+.+..+.|+|.|+.+++++.|.+|++|..+
T Consensus       237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence            356666789999999999999988778888899999999999999999999999999999999764

>KOG0640|consensus

Probab=98.92  E-value=1.7e-08  Score=49.37  Aligned_cols=64  Identities=25%  Similarity=0.373  Sum_probs=53.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceE---EeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVR---TLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +.|.|.+++.|.....+++|++.+ .++..   ....|...|..+.+++.+++.++++.||-|++||-
T Consensus       224 fHPsGefllvgTdHp~~rlYdv~T-~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG  290 (430)
T KOG0640|consen  224 FHPSGEFLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG  290 (430)
T ss_pred             ecCCCceEEEecCCCceeEEeccc-eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence            457889999999999999999987 23222   34568889999999999999999999999999983

>KOG0642|consensus

Probab=98.92  E-value=1.3e-08  Score=52.39  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=54.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC---------CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL---------KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++..+++|+-||.|+.|++..+         ......+.+|...++.++++.....+++++.||++++|+..
T Consensus       352 v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  352 VPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             ecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence            4568889999999999999966421         13345678999999999999988789999999999999864

>KOG0290|consensus

Probab=98.92  E-value=4.4e-08  Score=47.53  Aligned_cols=64  Identities=30%  Similarity=0.463  Sum_probs=52.6

Q ss_pred             cCcEEEEeeCCCCEEEeecCCC--CcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNL--KTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.+.+.+++-|-...+|+++..  .....++-+|..+|..++|...+ ..+++++.||.+++||++.
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            4578999999999999999872  12344566799999999999876 6788999999999999873

>KOG0300|consensus

Probab=98.91  E-value=5.3e-09  Score=51.28  Aligned_cols=62  Identities=27%  Similarity=0.425  Sum_probs=55.9

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+..+++++.|..-.+||.++ +.++..+.+|..+....+-+|..+++++.+.|.++++||++
T Consensus       283 gg~Q~vTaSWDRTAnlwDVEt-ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR  344 (481)
T KOG0300|consen  283 GGQQMVTASWDRTANLWDVET-GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR  344 (481)
T ss_pred             Ccceeeeeeccccceeeeecc-CceeccccCcchhccccccCCcceEEEEeccCceeEeccch
Confidence            356789999999999999998 77888899999988888889999999999999999999986

>KOG2445|consensus

Probab=98.90  E-value=6.3e-08  Score=47.22  Aligned_cols=64  Identities=20%  Similarity=0.479  Sum_probs=51.8

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCC---cceEEeccCCCCEEEEEEcC-C-CCEEEEEeCCCCEEEEeC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLK---TRVRTLQGHSNWVKNIEFSS-K-DNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~   66 (68)
                      .+.|+..++|+.|..+++|+.+...   ........|...+..+.|.+ + |+.+++++.|+++.+|.-
T Consensus        22 D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   22 DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            4568899999999999999975421   23445678999999999965 4 899999999999999964

>KOG1007|consensus

Probab=98.90  E-value=7.9e-09  Score=50.00  Aligned_cols=63  Identities=35%  Similarity=0.660  Sum_probs=47.6

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++.+++.+ |+.+..||.++.......-.+|...+..+.++|+. ..+++|+.|+.+++||.++
T Consensus       183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~  246 (370)
T KOG1007|consen  183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK  246 (370)
T ss_pred             ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence            566777665 68999999987332222334677778999999964 6788999999999999863

>KOG1539|consensus

Probab=98.87  E-value=6e-08  Score=52.09  Aligned_cols=62  Identities=29%  Similarity=0.441  Sum_probs=50.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-CCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD-GSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~   65 (68)
                      |||||+.++++++|+.|++||+.+ ...+-.+ ....+..++.++|.+..+++...| .-+.+|.
T Consensus       584 FS~DgrWlisasmD~tIr~wDlpt-~~lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  584 FSPDGRWLISASMDSTIRTWDLPT-GTLIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eCCCCcEEEEeecCCcEEEEeccC-cceeeeE-ecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            789999999999999999999987 3333222 245667899999999999998877 6788884

>KOG1009|consensus

Probab=98.86  E-value=2e-08  Score=50.14  Aligned_cols=66  Identities=26%  Similarity=0.499  Sum_probs=54.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecC--------C------CCcc-eEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDAR--------N------LKTR-VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~--------~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++|++..+++|+.++.+.+|...        +      ..+. .....+|...+..++|+++++.+.+++.|..+++||+
T Consensus        73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence            67889999999999999999765        1      0111 2245568888999999999999999999999999997


Q ss_pred             C
Q psy11876         67 N   67 (68)
Q Consensus        67 ~   67 (68)
                      +
T Consensus       153 ~  153 (434)
T KOG1009|consen  153 H  153 (434)
T ss_pred             c
Confidence            5

>KOG0268|consensus

Probab=98.85  E-value=6.6e-09  Score=51.39  Aligned_cols=64  Identities=14%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGH-SNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++|.|+-|++|+.|..|++|.... ....-..... -..|.++.|+.+.+++++|+.|+.+++|..
T Consensus       280 fsptG~EfvsgsyDksIRIf~~~~-~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  280 FSPTGQEFVSGSYDKSIRIFPVNH-GHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             cCCCcchhccccccceEEEeecCC-CcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            688999999999999999998875 2221122211 134789999999999999999999999963

>KOG0641|consensus

Probab=98.85  E-value=5.6e-08  Score=45.95  Aligned_cols=62  Identities=32%  Similarity=0.483  Sum_probs=49.6

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEec----c---CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQ----G---HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++-++++|+.|..+++|+++. ..++....    +   ....|..++..|.+++++++-.|....+||++
T Consensus       193 n~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR  261 (350)
T ss_pred             cCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence            567899999999999999986 33443332    1   12467888999999999999999999999976

>KOG1332|consensus

Probab=98.85  E-value=3.1e-08  Score=47.04  Aligned_cols=63  Identities=22%  Similarity=0.385  Sum_probs=51.6

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCc-ceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKT-RVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~   67 (68)
                      -|.+|++++.|+.+-+|....... .......|...+++++|.|.  +..+++++.||.+.+.+++
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~  134 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYD  134 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence            368999999999999999876432 24456678899999999995  5788999999999998765

>KOG0321|consensus

Probab=98.84  E-value=1.1e-08  Score=53.51  Aligned_cols=62  Identities=31%  Similarity=0.512  Sum_probs=51.7

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEE--eccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRT--LQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      ....|++++-|..+++|+... ......  +.+|...+.++++.+. ...+.+|+.|+.+.+||++
T Consensus       111 ge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen  111 GESLLVSASGDSTIRPWDVKT-SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             CceeEEEccCCceeeeeeecc-ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            446788999999999999986 344443  7899999999999995 5778899999999999986

>KOG1034|consensus

Probab=98.84  E-value=1.3e-08  Score=49.81  Aligned_cols=61  Identities=21%  Similarity=0.358  Sum_probs=52.8

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+++.++.-|.|++.+... ......+.+|...|+.+.+.|. .+++++++.|..+++|++++
T Consensus       106 p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             eeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            4678888889999999877 5667778899999999999996 58999999999999999874

>KOG1274|consensus

Probab=98.84  E-value=8.1e-08  Score=51.93  Aligned_cols=65  Identities=15%  Similarity=0.332  Sum_probs=50.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQG--HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..|++..++....|+.|++|+... -.....+..  +...+..++|+|+|.++++++.++.|.+||..
T Consensus       196 W~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  196 WHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ecCCCCeEEeeccCCeEEEEccCC-ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            467877888888899999998865 223333332  33347899999999999999999999999975

>KOG0288|consensus

Probab=98.83  E-value=2e-09  Score=53.67  Aligned_cols=65  Identities=26%  Similarity=0.467  Sum_probs=54.5

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+++..+++++.|+.+++|+... .....++.+|...+.+..+......+++++.|.+++.||+++
T Consensus       228 d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k  292 (459)
T KOG0288|consen  228 DSDNKHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK  292 (459)
T ss_pred             cCCCceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence            34667888889999999999987 566778889999999998877655589999999999999863

>KOG3881|consensus

Probab=98.83  E-value=3.6e-08  Score=49.06  Aligned_cols=67  Identities=19%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ..|.++++++|...+.+..+|.+........+.+..+.+.++..+|.++.+++++.|+.++++|..+
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            3578899999999999999999873333334677778889999999999999999999999999763

>KOG4328|consensus

Probab=98.83  E-value=1.4e-08  Score=51.33  Aligned_cols=65  Identities=17%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+...++.+..-|...+|+.+..+........|...|..++++|.. ..+++++.|+++++||+++
T Consensus       289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence            3445566666667889999987555566677788899999999964 7789999999999999874

>KOG2055|consensus

Probab=98.83  E-value=1.4e-07  Score=48.04  Aligned_cols=65  Identities=14%  Similarity=0.253  Sum_probs=50.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCC-CEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSN-WVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++.++..+++++.+|.|.+|+++. ..+...+..... ...+++.++++.++++|+..|.+.+||..
T Consensus       352 fsSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  352 FSSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             EecCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            567888888888899999999987 455555543322 23466677889999999999999999854

>KOG0639|consensus

Probab=98.82  E-value=1.2e-08  Score=52.50  Aligned_cols=66  Identities=20%  Similarity=0.350  Sum_probs=50.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCC--CCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHS--NWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++|++.+++|+.-..+.+||+... .+........  -....++.+|+.+..++|+.||.|.+||+++
T Consensus       473 L~pdgrtLivGGeastlsiWDLAap-TprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAP-TPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCC-CcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence            5789999999999999999999752 2222222222  2345677899999999999999999999874

>KOG1407|consensus

Probab=98.81  E-value=6.8e-08  Score=46.26  Aligned_cols=60  Identities=17%  Similarity=0.325  Sum_probs=49.8

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+|..-.-.|.|.+..... .+++..+.+|.....++.+.|+++++++|+.|..+.+||+.
T Consensus       160 d~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~  219 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD  219 (313)
T ss_pred             CEEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCCceEeeccccceeeccChh
Confidence            3444444458888888766 57788899999988999999999999999999999999974

>KOG1188|consensus

Probab=98.80  E-value=6.3e-08  Score=47.65  Aligned_cols=61  Identities=18%  Similarity=0.390  Sum_probs=49.4

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEeCCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS--KDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ..++++..++.+++|+..+ ......+.++...+..+.+..  ....+.+++.||++++||+|.
T Consensus        41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs  103 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS  103 (376)
T ss_pred             eeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec
Confidence            4578888899999999987 566667777777777777765  457889999999999999873

>KOG0299|consensus

Probab=98.80  E-value=1.2e-07  Score=48.04  Aligned_cols=65  Identities=26%  Similarity=0.604  Sum_probs=50.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec-cC-----------CCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ-GH-----------SNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+.+...+++|+.+|.|.+|++.. +.|+.... +|           ..++.+++..|...++++++.+|.+++|.+.
T Consensus       334 ~~In~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  334 AFINDEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             EEecccceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence            355778899999999999999876 44443322 22           1278889999999999999999999999754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.79  E-value=3.8e-07  Score=42.09  Aligned_cols=62  Identities=24%  Similarity=0.449  Sum_probs=44.8

Q ss_pred             eeecCcEEEE--eeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---CCEEEEeCC
Q psy11876          2 IFLDTRVFAT--CSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD---GSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~   67 (68)
                      .+|+++.|+.  |..+..+.+|+.+.  .++..+.  ......+.|+|+++.++.++.+   |.+.+||.+
T Consensus        67 WsP~g~~favi~g~~~~~v~lyd~~~--~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   67 WSPNGNEFAVIYGSMPAKVTLYDVKG--KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             ECcCCCEEEEEEccCCcccEEEcCcc--cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            3678877644  45667899999963  3444443  4556789999999999888754   669999975

>KOG0644|consensus

Probab=98.78  E-value=2.2e-09  Score=57.62  Aligned_cols=61  Identities=28%  Similarity=0.541  Sum_probs=52.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++.+.-++++++.|..|++|.+.. ..++..+.+|++.|.+++++|..    +.+.||++++||.+
T Consensus       240 vs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  240 VSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cchhhhhhhhcccCceEEEEecCC-CchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            345566789999999999999988 67888899999999999999954    55789999999975

>KOG0280|consensus

Probab=98.78  E-value=1.4e-07  Score=45.84  Aligned_cols=63  Identities=27%  Similarity=0.350  Sum_probs=50.5

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEE-eccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRT-LQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+.+++|+.|+.+..||++..+..+.. ...|..+|.++.-+| .+..+++|+.|..+++||.+
T Consensus       177 ~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  177 EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence            4478999999999999999843332222 456788898888776 57899999999999999976

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.75  E-value=2.3e-07  Score=48.18  Aligned_cols=63  Identities=14%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+|+...++.|..||.+.+|+... +..  ......-....++|+|++..++.++..|.+.+||+.
T Consensus       267 ~sp~E~kLvlGC~DgSiiLyD~~~-~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  267 RSPSEDKLVLGCEDGSIILYDTTR-GVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCcccceEEEEecCCeEEEEEcCC-Cee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            467788999999999999999875 222  222233445789999999999999999999999963

>KOG0289|consensus

Probab=98.75  E-value=3e-07  Score=46.65  Aligned_cols=64  Identities=17%  Similarity=0.257  Sum_probs=50.9

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQG--HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .|++.+|.+++.|+...+.++.. .........  ......+.+++|++..+.++..|+.+.+||+.
T Consensus       312 h~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  312 HPTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             ccCCcEEEEecCCceEEEEEccC-CcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            46788999999999999888887 333333322  23456889999999999999999999999975

>KOG4283|consensus

Probab=98.75  E-value=5.7e-08  Score=47.34  Aligned_cols=61  Identities=31%  Similarity=0.517  Sum_probs=48.1

Q ss_pred             cEEEEeeCCCCEEEeecCCCCc-------------ceE-EeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKT-------------RVR-TLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      -.+++|+.|+.+++||++....             +.. .-.+|...+..++|..++.++.+++.|..+++|+..
T Consensus       202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            3689999999999999974211             111 134566788999999999999999999999999865

>KOG4714|consensus

Probab=98.74  E-value=2.1e-08  Score=47.95  Aligned_cols=62  Identities=32%  Similarity=0.602  Sum_probs=53.9

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+.++.|+.||.+.+|+.+....+...+..|..+++-+.|+|. +..+++++.||.+-.||..
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            4678999999999999998755667778889999999999994 6889999999999999865

>KOG0321|consensus

Probab=98.73  E-value=7e-08  Score=50.67  Aligned_cols=66  Identities=17%  Similarity=0.264  Sum_probs=57.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++|+.|...++|.+.....+.....+|...|..++|.|. -..+++++.|..+.+|++.
T Consensus       325 lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  325 LSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             cCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence            57899999999999999999998766667778899999999999984 4677888999999999864

>KOG4328|consensus

Probab=98.71  E-value=1.3e-07  Score=48.08  Aligned_cols=61  Identities=31%  Similarity=0.381  Sum_probs=49.7

Q ss_pred             CcEEEEeeCCCCEEEeecCCC--Cc-ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          6 TRVFATCSDDTTIALWDARNL--KT-RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ...+++++.|...++||++..  +. ++.....|...|++..|+|.+-.+++-+.|..|++||-
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            467899999999999999752  12 34555678999999999997645888889999999985

>KOG0974|consensus

Probab=98.71  E-value=2.2e-07  Score=50.70  Aligned_cols=62  Identities=32%  Similarity=0.409  Sum_probs=53.5

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +.+++.+++.++|..+++|.+.+.........+|..+++...+.|.  .+.+.+.|.+.++|+.
T Consensus       184 s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~  245 (967)
T KOG0974|consen  184 SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV  245 (967)
T ss_pred             ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence            4588999999999999999998754444467789999999999887  8999999999999954

>KOG2919|consensus

Probab=98.70  E-value=2.5e-07  Score=45.61  Aligned_cols=66  Identities=21%  Similarity=0.422  Sum_probs=53.9

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCCEEEEeCCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF-DGSIYTWDINK   68 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~   68 (68)
                      ++| +...++.++....+-++.... ..+.....+|..+|..++|.++++.+.++.. +..|..||++.
T Consensus       215 ~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  215 FSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             ccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            455 345788888888888887766 6778888899999999999999988877765 68999999873

>KOG2110|consensus

Probab=98.68  E-value=8.1e-07  Score=44.26  Aligned_cols=66  Identities=14%  Similarity=0.262  Sum_probs=52.3

Q ss_pred             CeeecCcEEEEeeCCCC-EEEeecCCCCcceEEeccC--CCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTT-IALWDARNLKTRVRTLQGH--SNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++++|.++|+++..|. |+|+.... +..+..+.-.  ...+.+++|+++++.+.+.+..+++++|.+.
T Consensus       180 afs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  180 AFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            47889999999999985 56888876 5555555433  2356788999999999999999999999765

>KOG2048|consensus

Probab=98.68  E-value=5e-07  Score=47.73  Aligned_cols=65  Identities=17%  Similarity=0.303  Sum_probs=49.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceE-E-eccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVR-T-LQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..|.+..++.|+.||.+..++..+ +...+ . +.-...++.+++|++.+..++.|+.|+.|++||..
T Consensus       118 i~p~~~~l~IgcddGvl~~~s~~p-~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  118 INPENTILAIGCDDGVLYDFSIGP-DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             eCCccceEEeecCCceEEEEecCC-ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence            456677889999999777777765 32222 2 22245789999999999999999999999999975

>KOG2111|consensus

Probab=98.67  E-value=1e-06  Score=43.23  Aligned_cols=65  Identities=23%  Similarity=0.375  Sum_probs=51.0

Q ss_pred             eeecCcEEEEeeCCCC-EEEeecCCCCcceEEec-c-CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTT-IALWDARNLKTRVRTLQ-G-HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..+|..+|+++..|. |++|+..+ +..+..+. + ....+.+++++|+..+++..+..|+++++.++
T Consensus       189 Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  189 LNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             EcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence            3457889999999985 56999987 44444443 2 23468899999999999999999999999765

>KOG0270|consensus

Probab=98.66  E-value=4.4e-07  Score=45.98  Aligned_cols=61  Identities=28%  Similarity=0.444  Sum_probs=53.8

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..+.++..||.++-++++....++.....|..+|..++++.. ...+++++.++.+.+|++.
T Consensus       343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            457788889999999999877899999999999999999886 4678899999999999864

>KOG0307|consensus

Probab=98.66  E-value=2.3e-08  Score=54.70  Aligned_cols=63  Identities=24%  Similarity=0.466  Sum_probs=48.1

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEE-eccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRT-LQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++.+++|..||.|.+||+.+...+... -......|.+++|+.+ .+.+++++.++++.+||++.
T Consensus       129 ~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~  193 (1049)
T KOG0307|consen  129 GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK  193 (1049)
T ss_pred             CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC
Confidence            469999999999999999764333322 1224567899999886 46677888889999999873

>KOG2110|consensus

Probab=98.65  E-value=1.1e-06  Score=43.87  Aligned_cols=50  Identities=28%  Similarity=0.449  Sum_probs=43.6

Q ss_pred             CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCC-EEEEeC
Q psy11876         16 TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS-IYTWDI   66 (68)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~   66 (68)
                      |.|.+|+..+ ..+...+.+|...+.+++++++|.++++++..|+ |+++..
T Consensus       153 GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v  203 (391)
T KOG2110|consen  153 GDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV  203 (391)
T ss_pred             ceEEEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence            7899999987 5778888999999999999999999999999887 556654

>KOG1310|consensus

Probab=98.63  E-value=5e-07  Score=47.30  Aligned_cols=64  Identities=22%  Similarity=0.411  Sum_probs=53.0

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEE-eccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRT-LQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+|.++++|+.|-.+.+|+.-. .++... -.+|..-|.+..|.|.  .+.++++..|..|+++|+.
T Consensus        59 n~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   59 NADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             cCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            35789999999999999999875 444444 4678888999999994  5788999999999999975

>KOG1538|consensus

Probab=98.62  E-value=3.6e-07  Score=48.86  Aligned_cols=63  Identities=16%  Similarity=0.344  Sum_probs=53.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +-|||..++.+-. ..+.+||... +....+..+|...|.+++|+.++..+++|+.|..+.+|..
T Consensus        20 fkPDGsqL~lAAg-~rlliyD~nd-G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~   82 (1081)
T KOG1538|consen   20 FKPDGTQLILAAG-SRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTS   82 (1081)
T ss_pred             ECCCCceEEEecC-CEEEEEeCCC-cccccccccccceEEEEEEccCCceeccCCCceeEEEecc
Confidence            5678876655543 4788999977 6677789999999999999999999999999999999964

>KOG1063|consensus

Probab=98.60  E-value=3.9e-07  Score=48.36  Aligned_cols=64  Identities=25%  Similarity=0.458  Sum_probs=51.6

Q ss_pred             eeecCcEEEEeeCCC-----CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDT-----TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+|++++++++....     .|++|+..+ -.....+..|.-.|..++|+|+++++++.+.|++..+|..
T Consensus       533 ~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  533 ISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             ecCCCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            467888888876553     567787765 2334467889999999999999999999999999999975

>KOG1445|consensus

Probab=98.57  E-value=4.6e-07  Score=48.25  Aligned_cols=59  Identities=22%  Similarity=0.342  Sum_probs=50.3

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++ ..+.+++||+.+ .+......+|...|.+..|+.++.++++.+.|.++++||.+
T Consensus       142 gil~s~-a~g~v~i~D~st-qk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  142 GILASG-AHGSVYITDIST-QKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             ceEEec-cCceEEEEEccc-CceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence            344444 468999999988 56677788899999999999999999999999999999976

>KOG2445|consensus

Probab=98.57  E-value=2.3e-06  Score=42.08  Aligned_cols=61  Identities=30%  Similarity=0.512  Sum_probs=47.9

Q ss_pred             CcEEEEeeCCCCEEEeecCCCC--------cceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeC
Q psy11876          6 TRVFATCSDDTTIALWDARNLK--------TRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~   66 (68)
                      |+.+++++.|+.+.+|+-....        ....++......+..++|.|.  +..+++++.||++++|+.
T Consensus        73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence            7889999999999999874211        123345566778999999994  678899999999999974

>KOG2394|consensus

Probab=98.55  E-value=6.2e-07  Score=46.64  Aligned_cols=43  Identities=26%  Similarity=0.532  Sum_probs=37.6

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEc
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS   46 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (68)
                      +||+++|++|++|-.|.||.... ++.+..-++|..+|..++|.
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             cCCccEEEecCCcceEEEEEecc-ceEEEeccccccceeeEeec
Confidence            78999999999999999999976 66666777899999888886

>KOG2106|consensus

Probab=98.55  E-value=2.6e-06  Score=44.27  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++|+|.+|+.|+.|+.+++|.....+...... ..+..++..+.|+++++.+.+.+.|-.+..|..
T Consensus       455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             EcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            67899999999999999999987644332211 223378899999999999999999999999953

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.55  E-value=3.2e-06  Score=40.48  Aligned_cols=59  Identities=24%  Similarity=0.323  Sum_probs=44.4

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      ..+++++.|+.+.+|+..+ ......+..+.. +..+.++|++..+ +++..++.+.+||..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t-~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT-LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             cEEEEecCCCEEEEEECCC-CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            5678889999999999876 444555554433 5678899988765 566778999999865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055|consensus

Probab=98.55  E-value=1e-06  Score=45.05  Aligned_cols=65  Identities=23%  Similarity=0.480  Sum_probs=52.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++++++|+..+..|.|.+....+ +..+..+. ..+.+..++|+.+++.+..++.+|.+.+||+++
T Consensus       311 VShd~~fia~~G~~G~I~lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~  375 (514)
T KOG2055|consen  311 VSHDSNFIAIAGNNGHIHLLHAKT-KELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ  375 (514)
T ss_pred             ecCCCCeEEEcccCceEEeehhhh-hhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence            578999999999999999987766 33333343 345578899999999998888999999999874

>KOG0307|consensus

Probab=98.54  E-value=2.4e-07  Score=50.95  Aligned_cols=62  Identities=29%  Similarity=0.584  Sum_probs=50.2

Q ss_pred             cEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876          7 RVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      ..+++++.|   ..+.+||++....+...+++|..++.++.|++.. +++++++.|+++.+|+..+
T Consensus       220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            345555544   4677899987667788889999999999999965 8899999999999998753

>KOG4378|consensus

Probab=98.54  E-value=4.9e-07  Score=46.79  Aligned_cols=61  Identities=30%  Similarity=0.556  Sum_probs=49.0

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      .++.+++.+|.|.+||.............|..+...++|+|. ..++++.+.|..|.+||.+
T Consensus       178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            467889999999999997632233345678888899999995 5788899999999999975

>KOG1009|consensus

Probab=98.54  E-value=9.8e-07  Score=44.44  Aligned_cols=61  Identities=25%  Similarity=0.510  Sum_probs=49.2

Q ss_pred             cEEEEeeCCCCEEEeecCCC--Cc------ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNL--KT------RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++|+-|..+++|.....  ..      ....+..|...++.+.|+|++.++++++.++.+.+|...
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~   95 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG   95 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence            47999999999999987531  11      122345688899999999999999999999999999643

>KOG1963|consensus

Probab=98.54  E-value=1.2e-06  Score=47.28  Aligned_cols=68  Identities=22%  Similarity=0.410  Sum_probs=53.9

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCC---CCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARN---LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .++|+++.+++|..||.|.+|+--.   .......+.=|..+|.++.|++++..+.+|+..+-+.+|.+.+
T Consensus       212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3689999999999999999997432   1122333444777899999999999999999999999998653

>KOG2106|consensus

Probab=98.54  E-value=1.1e-06  Score=45.52  Aligned_cols=61  Identities=23%  Similarity=0.379  Sum_probs=49.9

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      |..+.-.++|..+|.+.+|+.... ........|...|.+++...++.++. ++.|+.+..||
T Consensus       254 F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd  314 (626)
T KOG2106|consen  254 FLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD  314 (626)
T ss_pred             EcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccEee-cCccceEEecc
Confidence            444456789999999999999873 44445558999999999988888776 99999999997

>KOG1517|consensus

Probab=98.53  E-value=1.9e-06  Score=48.07  Aligned_cols=63  Identities=19%  Similarity=0.333  Sum_probs=51.3

Q ss_pred             cCcEEEEeeCCCCEEEeecCCC--CcceEEeccCCCC--EEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNL--KTRVRTLQGHSNW--VKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      +++++++|..||.+++||.+-.  ...+.....|...  |..+.+.+++ ..+++++.+|.|.+||++
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence            4689999999999999998642  2345566777766  8888888866 469999999999999987

>KOG1524|consensus

Probab=98.51  E-value=1.2e-06  Score=45.82  Aligned_cols=64  Identities=20%  Similarity=0.451  Sum_probs=51.2

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCC--------C-------------------------------cceEEeccCCCCEEEE
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNL--------K-------------------------------TRVRTLQGHSNWVKNI   43 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~--------~-------------------------------~~~~~~~~~~~~~~~~   43 (68)
                      +|+|.-+.+++.||.+++|.-.-.        .                               ..+....+|.+-+.++
T Consensus       113 ~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~  192 (737)
T KOG1524|consen  113 SPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSL  192 (737)
T ss_pred             CCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEe
Confidence            578888999999999999974200        0                               1233455788888999


Q ss_pred             EEcCCCCEEEEEeCCCCEEEEeC
Q psy11876         44 EFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus        44 ~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .|++.+.++++++.|-...+||-
T Consensus       193 ~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  193 SWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             ecCccccceeecCCceeEEeecc
Confidence            99999999999999999999984

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.51  E-value=5.5e-06  Score=39.66  Aligned_cols=65  Identities=17%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             eeecCcEEEE-eeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFAT-CSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA-GFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~   68 (68)
                      ++++++.++. ...++.+.+|+... ....... .+...+..++|+|++..++++ ..++.+.+||.++
T Consensus       214 ~s~dg~~~~~~~~~~~~i~v~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       214 LTKDGKTAFVALGPANRVAVVDAKT-YEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            4567776444 34456799999876 3333222 233457789999999877765 5689999999763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>smart00320 WD40 WD40 repeats

Probab=98.51  E-value=1.3e-06  Score=28.96  Aligned_cols=36  Identities=39%  Similarity=0.710  Sum_probs=30.0

Q ss_pred             eEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876         30 VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ...+..+...+.+++|.+.+..+++++.++.+.+|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            344556777889999999888999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.51  E-value=7.5e-06  Score=40.09  Aligned_cols=65  Identities=35%  Similarity=0.642  Sum_probs=51.5

Q ss_pred             eeecCcEEEEeeC-CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSD-DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++..++.++. ++.+++|+... .........|...+..+++.|.+. .+++++.++.+.+||.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~  229 (466)
T COG2319         163 FSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS  229 (466)
T ss_pred             ECCCCCEEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence            4566777888875 99999999976 455666777889999999998876 55565889999999754

>KOG0301|consensus

Probab=98.47  E-value=8.1e-07  Score=47.21  Aligned_cols=55  Identities=33%  Similarity=0.652  Sum_probs=37.1

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+++|+.|..|++|.-.   ....++.+|..-|..++.-+++ .+++++.||.|++|++
T Consensus       153 ~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~  207 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL  207 (745)
T ss_pred             cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec
Confidence            66777777777777653   3355666777777777766553 4566777777777775

>KOG1408|consensus

Probab=98.44  E-value=1.5e-06  Score=46.90  Aligned_cols=65  Identities=25%  Similarity=0.392  Sum_probs=58.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.|.+.++++...|..+.++|... +.+.....+|...|..+.|.++=+++++.+.|+-|.+|.+.
T Consensus       649 lDPSgiY~atScsdktl~~~Df~s-gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  649 LDPSGIYLATSCSDKTLCFVDFVS-GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ECCCccEEEEeecCCceEEEEecc-chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            346788999999999999999987 67788899999999999999988899999999999999864

>KOG2919|consensus

Probab=98.44  E-value=8.2e-07  Score=43.89  Aligned_cols=56  Identities=18%  Similarity=0.288  Sum_probs=45.0

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD   58 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (68)
                      .|+++++++|+.+|.|++|+.+....+......+..-++.++++|--..+++++..
T Consensus       306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            46789999999999999999987666666777778888899999976666666543

>KOG4378|consensus

Probab=98.44  E-value=2.8e-06  Score=44.21  Aligned_cols=64  Identities=16%  Similarity=0.291  Sum_probs=51.2

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |+| +..+|++.+.|..+.+||+.. .... .......+...++|.+++.++..|...|.+..||++
T Consensus       216 fspsne~l~vsVG~Dkki~~yD~~s-~~s~-~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  216 FSPSNEALLVSVGYDKKINIYDIRS-QAST-DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             ecCCccceEEEecccceEEEeeccc-cccc-ceeeecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            455 456789999999999999986 2222 233456677899999999999999999999999987

>KOG0771|consensus

Probab=98.41  E-value=2.1e-06  Score=43.18  Aligned_cols=64  Identities=20%  Similarity=0.306  Sum_probs=51.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++.+|++++.|+++|.|.+++..........-+.|...|..+.|+|+.+...+.+.+.+..+..
T Consensus       289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            5789999999999999999998774434444567888999999999988888777777766653

>KOG2096|consensus

Probab=98.41  E-value=5.5e-06  Score=41.12  Aligned_cols=60  Identities=18%  Similarity=0.438  Sum_probs=48.7

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++.+|.+++.|..|.+|+.+  ++.+..+......-...+.+|+++.++.+++...+.+|.+
T Consensus       198 ~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~  257 (420)
T KOG2096|consen  198 NAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP  257 (420)
T ss_pred             CceEEEEecCCCcEEEEecC--CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEE
Confidence            45789999999999999997  4455555555555567788999999999999999999964

>KOG0974|consensus

Probab=98.40  E-value=6e-06  Score=45.56  Aligned_cols=65  Identities=22%  Similarity=0.292  Sum_probs=53.6

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++.-.+++|+.-+.+-+|.... ..+.....+|.+.+..+.++.+++++++.+.|+.+++|++.+
T Consensus       142 s~~~~~i~~gsv~~~iivW~~~~-dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s  206 (967)
T KOG0974|consen  142 SAEELYIASGSVFGEIIVWKPHE-DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS  206 (967)
T ss_pred             cCcEEEEEeccccccEEEEeccc-cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc
Confidence            34455788888889999999874 333336789999999999999999999999999999998753

>KOG1240|consensus

Probab=98.37  E-value=9.8e-06  Score=45.91  Aligned_cols=65  Identities=23%  Similarity=0.393  Sum_probs=48.2

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCC------cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLK------TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++.+|++|+.||.|++|+.+...      +...++......+..+...+.+..++.++.||.+.+.++.
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence            3456899999999999999986421      1122333244567788888888899999999999988753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.36  E-value=1.1e-05  Score=40.76  Aligned_cols=64  Identities=20%  Similarity=0.210  Sum_probs=46.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA-GFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~   67 (68)
                      +++|++.++.++.|+.+.++|+.+ ...+........ ...+++++++++++.+ ..++.+.++|.+
T Consensus        44 ~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   44 FSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             -TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             ecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            467899999999999999999988 455555554433 4688999999877755 467899999865

...

>KOG2315|consensus

Probab=98.35  E-value=1.1e-05  Score=42.16  Aligned_cols=63  Identities=16%  Similarity=0.332  Sum_probs=46.8

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC------CCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF------DGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~   67 (68)
                      ++|.|++++.++.+   |.+-+||..+ ...+..+....  ...+.|+|++.++++++.      |..+.+|++.
T Consensus       319 fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  319 FNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            67899999888877   7888999977 55554444332  357789999999988875      4667788763

>KOG2048|consensus

Probab=98.34  E-value=1.5e-05  Score=42.56  Aligned_cols=66  Identities=20%  Similarity=0.415  Sum_probs=49.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGH-SNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++..++.+|.+-.+|.+-+|++.+.-.....+.++ ...+..++|++.+ .+++.+.+|.+.-||+.+
T Consensus        33 ~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   33 YSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             EeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEeccc
Confidence            45667889999999999999998732233345544 4578899999655 567777899999999753

>KOG0650|consensus

Probab=98.34  E-value=1.3e-05  Score=42.54  Aligned_cols=45  Identities=22%  Similarity=0.374  Sum_probs=37.1

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD   49 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   49 (68)
                      .|.|..+++|+.||.+++|.+.+ +.++..+. ....|.+++|+|.+
T Consensus       409 dp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~  453 (733)
T KOG0650|consen  409 DPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLS  453 (733)
T ss_pred             cCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCC
Confidence            35678999999999999999998 67776665 44578999999965

>KOG3881|consensus

Probab=98.33  E-value=1.3e-05  Score=40.49  Aligned_cols=63  Identities=19%  Similarity=0.314  Sum_probs=56.7

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+.|+++..-+.+++||.++.++|+..+.-.+.++.++...|.++.+.++...+.+..+|.++
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~  278 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG  278 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC
Confidence            467999999999999999988889999888888999999999999999999999999998763

>KOG1188|consensus

Probab=98.32  E-value=3e-06  Score=42.04  Aligned_cols=62  Identities=26%  Similarity=0.539  Sum_probs=46.3

Q ss_pred             CcEEEEeeC----CCCEEEeecCCCCcceE-EeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSD----DTTIALWDARNLKTRVR-TLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~----~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+.++.|..    +-.+.+||.+....++. ....|...|..++|+|. ..++++++-||.+.++|..
T Consensus       129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            345555543    24677899987444333 35678999999999995 5899999999999999975

>KOG1036|consensus

Probab=98.32  E-value=3.4e-06  Score=41.27  Aligned_cols=54  Identities=26%  Similarity=0.420  Sum_probs=42.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      |.|--+.|++|+.||.|.+|+..+ ++.+..+......|..++++.++..++.++
T Consensus       240 Fhp~~~tfaTgGsDG~V~~Wd~~~-rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  240 FHPIHGTFATGGSDGIVNIWDLFN-RKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eccccceEEecCCCceEEEccCcc-hhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            344456799999999999999987 555556666666789999999998887665

>KOG1523|consensus

Probab=98.30  E-value=7.9e-06  Score=40.39  Aligned_cols=65  Identities=20%  Similarity=0.385  Sum_probs=55.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC--cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK--TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+++...++.+..+..+.+|......  .+..++..|...+..+.|+|..+.+++|+.|+-..+|..
T Consensus        18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            45688899999999999999886533  356677889999999999999999999999999999875

>KOG0644|consensus

Probab=98.29  E-value=5.5e-07  Score=49.03  Aligned_cols=63  Identities=24%  Similarity=0.447  Sum_probs=56.0

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      -.+..+++|+.|..+++|...+ ..+...+.+|...+..++.+.++..+++++.|..|++|.++
T Consensus       200 rtg~~Iitgsdd~lvKiwS~et-~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  200 RTGRYIITGSDDRLVKIWSMET-ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             cccceEeecCccceeeeeeccc-hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            3578899999999999999877 67777899999999999988888889999999999999765

>KOG2139|consensus

Probab=98.28  E-value=1.7e-05  Score=39.96  Aligned_cols=63  Identities=19%  Similarity=0.359  Sum_probs=45.2

Q ss_pred             ecCcEEEEeeCC-CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDD-TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +|+..+++++.+ ..+.+|+... ...+....-.-..+..+.|+|++.++++...|+..++|+..
T Consensus       205 ~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  205 EDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             CCCCEEeecccCcceEEEEcCCC-CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            456566666554 6889999976 33222222334567789999999999999999999999543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.27  E-value=5.5e-05  Score=37.12  Aligned_cols=66  Identities=38%  Similarity=0.641  Sum_probs=50.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++++..+++++.++.+++|+.............|...+..+.+.|++..+++++.++.+.+|+..
T Consensus       249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             ECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence            456677888999999999999976333233335677888999999977777778888889999764

>KOG1645|consensus

Probab=98.26  E-value=1.9e-05  Score=40.18  Aligned_cols=65  Identities=11%  Similarity=0.140  Sum_probs=49.9

Q ss_pred             eeecC-cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDT-RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|.. ..+..++.+..+++.++++ ......+..+ ..+++.+|..+. +.+-+|...|-+.+||+++
T Consensus       201 fSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  201 FSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             cCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            56654 4789999999999999987 4444455555 778999998865 5666777789999999874

>KOG2321|consensus

Probab=98.26  E-value=1.6e-05  Score=42.09  Aligned_cols=63  Identities=25%  Similarity=0.516  Sum_probs=47.2

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEec------cCC-----CCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQ------GHS-----NWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .-++|++|..+|.+-+||.+. ...+..+.      .+.     ..|.++.|+.++..++.|+.+|.+.+||++.
T Consensus       186 ~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  186 EHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             ccceEEecccCceEEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence            346789999999999999975 22222221      122     2378999998899999999999999999873

>KOG1587|consensus

Probab=98.25  E-value=3.7e-06  Score=44.29  Aligned_cols=58  Identities=21%  Similarity=0.524  Sum_probs=46.1

Q ss_pred             EEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      |.+++ |..+++|.......++..+..+...+..++|+|.. ..++++..+|.+.+||+.
T Consensus       414 fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  414 FLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             eeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            34444 89999999873366777777777889999999964 677788889999999975

>KOG4497|consensus

Probab=98.21  E-value=3.2e-05  Score=38.77  Aligned_cols=60  Identities=18%  Similarity=0.405  Sum_probs=46.2

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~   67 (68)
                      ..++....++.+.+|++..... ...+.....++..++|+|+++ .+.+..++..+.+|.+.
T Consensus        62 ~ilC~~yk~~~vqvwsl~Qpew-~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~  122 (447)
T KOG4497|consen   62 HILCVAYKDPKVQVWSLVQPEW-YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN  122 (447)
T ss_pred             eeeeeeeccceEEEEEeeccee-EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEec
Confidence            3567888889999999976333 334556677889999999995 55677789999999764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.21  E-value=4.2e-06  Score=28.80  Aligned_cols=21  Identities=38%  Similarity=0.539  Sum_probs=19.0

Q ss_pred             eeecCcEEEEeeCCCCEEEee
Q psy11876          2 IFLDTRVFATCSDDTTIALWD   22 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~   22 (68)
                      +.|+++.+++++.|+.+++|+
T Consensus        19 ~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   19 WSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EETTSSEEEEEETTSEEEEEE
T ss_pred             EecccccceeeCCCCEEEEEC
Confidence            567889999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1273|consensus

Probab=98.21  E-value=4.6e-05  Score=37.98  Aligned_cols=54  Identities=22%  Similarity=0.315  Sum_probs=40.5

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFD   58 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   58 (68)
                      +++|+.+.+++.|+.+.+||+.. +.+...+. ...+|+...|+|.. +..+..-.+
T Consensus        74 S~dgr~LltsS~D~si~lwDl~~-gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~  128 (405)
T KOG1273|consen   74 SRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIME  128 (405)
T ss_pred             cCCCCEeeeecCCceeEEEeccC-CCceeEEE-ccCccceeeeccccCCeEEEEEec
Confidence            67999999999999999999987 45555554 56778888999853 444444333

>KOG4190|consensus

Probab=98.16  E-value=1.1e-05  Score=42.87  Aligned_cols=60  Identities=27%  Similarity=0.460  Sum_probs=47.2

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCC------cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLK------TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +.+-+++++.|+.+++|.++...      .+..+++.|..+++.+.+-.+.+.++++  |+-+.+||.
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP  811 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP  811 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence            45678999999999999997532      2455677899999999888777776655  788999984

>KOG1064|consensus

Probab=98.14  E-value=7.5e-06  Score=48.09  Aligned_cols=56  Identities=23%  Similarity=0.446  Sum_probs=43.9

Q ss_pred             eCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876         13 SDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        13 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.++.+.+||.......-..-.+|..+...+++.|+.+.+++|+.+|.+.+||+++
T Consensus      2312 ~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred             CCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHH
Confidence            44578889987543222223377888899999999999999999999999999863

>KOG1275|consensus

Probab=98.13  E-value=1.8e-05  Score=43.86  Aligned_cols=63  Identities=22%  Similarity=0.412  Sum_probs=51.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---------CCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF---------DGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~   67 (68)
                      +-.+++.+.+|...|.|-+.|.+. ...+..+.+|++.+..+..  +++++++|+.         |..+.+||++
T Consensus       183 mR~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  183 MRYNNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             EEecCcEEEeecccceEEeecCCc-Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh
Confidence            345778899999999999999987 5778899999998887765  7778887764         5668888875

>KOG1587|consensus

Probab=98.13  E-value=6.8e-05  Score=39.83  Aligned_cols=63  Identities=24%  Similarity=0.404  Sum_probs=47.6

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcc-----eEEeccCCCCEEEEEEcCCC--CEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTR-----VRTLQGHSNWVKNIEFSSKD--NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+.++.|..+|.|.+|+.+.....     ......|..++..+.|....  ..+++++.||.+..|+.+
T Consensus       254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~  323 (555)
T KOG1587|consen  254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD  323 (555)
T ss_pred             CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence            5678999999999999999753221     11234578888899987643  458888999999999764

>KOG2695|consensus

Probab=98.10  E-value=2.6e-05  Score=39.19  Aligned_cols=63  Identities=19%  Similarity=0.331  Sum_probs=45.4

Q ss_pred             cCcEEEEeeCCCCEEEeecCCC--CcceEEeccCCCCEE--EEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNL--KTRVRTLQGHSNWVK--NIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.+.+++++|.|++||.+.-  +..+....+|-+.-.  -+...++...+++++.|...++|.++
T Consensus       310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            4567889999999999999751  223666777754322  22345566778889999999999875

>KOG1523|consensus

Probab=98.10  E-value=3.8e-05  Score=38.16  Aligned_cols=65  Identities=15%  Similarity=0.150  Sum_probs=52.2

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCC--cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLK--TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .|.++.|.+++.|..-++|......  .+...+.-+.....++.|+|.+++++.++..+.+.+|=++
T Consensus        64 ap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E  130 (361)
T KOG1523|consen   64 APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE  130 (361)
T ss_pred             cCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence            4667889999999999999884322  3455566677888999999999999999999999988543

>KOG4227|consensus

Probab=98.09  E-value=5e-05  Score=38.90  Aligned_cols=66  Identities=20%  Similarity=0.372  Sum_probs=50.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC-----CcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL-----KTRVRTL-QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |+.+++++++|+.|..+++|.....     .+++... ..|..-|.+++|...++.+.++..++++..-|+.
T Consensus        64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE  135 (609)
T KOG4227|consen   64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE  135 (609)
T ss_pred             eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence            4567899999999999999997521     2334333 2355678899999889999999999999887764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.08  E-value=8.1e-05  Score=38.23  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=41.9

Q ss_pred             eeecCcEEEEe-eCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATC-SDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~   66 (68)
                      ++||++.++.+ +.++...+|.+.........+..+...+....|+|+++.++ +...++...+|++
T Consensus       255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        255 FSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM  321 (429)
T ss_pred             ECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence            57899877665 46777776654321223344555555567889999987665 4445677788764

>KOG1310|consensus

Probab=98.07  E-value=4.7e-05  Score=40.42  Aligned_cols=61  Identities=25%  Similarity=0.409  Sum_probs=52.5

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+..+++|+.||...+|+-.+ ......+.+....+.+++-+|....+++.+.|.++++|..
T Consensus       635 rgeyiasgSddgr~fiwek~t-g~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp  695 (758)
T KOG1310|consen  635 RGEYIASGSDDGRFFIWEKLT-GSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSP  695 (758)
T ss_pred             CCCeeeEecCCCceEEeecCC-cceEEEeeCchhheeeccCCCCCceeeeccCccceEEecc
Confidence            457899999999999999887 5666677778888889988888888999999999999974

>KOG0650|consensus

Probab=98.04  E-value=1.1e-05  Score=42.79  Aligned_cols=63  Identities=19%  Similarity=0.283  Sum_probs=53.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEE
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      +.|.|..++.|+.|+.+..+|+.-...+.....-|...+..+++++.-.++++++.|+++.++
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            456777899999999999999875455666777888889999999998999999999999887

>KOG1538|consensus

Probab=98.02  E-value=7.2e-05  Score=40.71  Aligned_cols=63  Identities=16%  Similarity=0.379  Sum_probs=52.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+++|.++..|+.|+.+.++.-+  +....+.-....+++.++..|+++.++.|+.||++-.|++
T Consensus       230 Yf~NGEy~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  230 YFTNGEYILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             eccCCcEEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            36789999999999999988553  4445556567789999999999999999999999987764

>KOG1334|consensus

Probab=98.00  E-value=5.2e-06  Score=42.95  Aligned_cols=62  Identities=21%  Similarity=0.384  Sum_probs=51.5

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      |...++.+|+..|.|-+|+... ...+..+.+...-|+++.=+|--..+++++.|.-|+||..
T Consensus       404 PrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  404 PRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             CccceEEecCccceEEEEecch-hHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence            5578899999999999999877 5556566666667788887888888999999999999965

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.99  E-value=0.00023  Score=35.23  Aligned_cols=65  Identities=17%  Similarity=0.250  Sum_probs=42.8

Q ss_pred             eeecCcEEEE-eeCCCCEEEeecCCCCcce------EEeccCCCCEEEEEEcCCCCEEEEEeC-CCCEEEEeCC
Q psy11876          2 IFLDTRVFAT-CSDDTTIALWDARNLKTRV------RTLQGHSNWVKNIEFSSKDNLLVTAGF-DGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   67 (68)
                      ++|+++.+++ ...++.+.+|++.+.....      ..... ......+.++|+++.+..... ++.+.+|++.
T Consensus       133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            5678877754 4455899999986522111      11111 233467899999888766665 7999999864

>KOG0649|consensus

Probab=97.97  E-value=0.00023  Score=34.58  Aligned_cols=59  Identities=15%  Similarity=0.294  Sum_probs=36.4

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCC--------CEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSN--------WVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..+.+|+.||.+++|+.++ .+.+..+.....        .-+..++..+..+++++ ....+.+|.++
T Consensus       169 ~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLr  235 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLR  235 (325)
T ss_pred             cceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEecc
Confidence            5689999999999999987 444444443221        11223333344455554 46677788765

>KOG2111|consensus

Probab=97.96  E-value=0.0002  Score=35.65  Aligned_cols=56  Identities=16%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             eeCCCCEEEeecCCCCc-ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCC-EEEEeCC
Q psy11876         12 CSDDTTIALWDARNLKT-RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS-IYTWDIN   67 (68)
Q Consensus        12 ~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~   67 (68)
                      |-..|.+.+-++..... +...+.+|...+.+++++.+|..+++++..|+ |++||-+
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~  212 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE  212 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence            34447777777654222 35678899999999999999999999999886 6788754

>KOG1409|consensus

Probab=97.89  E-value=4.1e-05  Score=38.41  Aligned_cols=63  Identities=27%  Similarity=0.610  Sum_probs=50.0

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ....+.+|..|..+.+|++.-.........+|...+..+...+--+.+.+++.|+.|.+|++.
T Consensus       208 ~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  208 GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            456789999999999999975344455666777777777776666788999999999999875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.89  E-value=0.00031  Score=34.78  Aligned_cols=64  Identities=16%  Similarity=0.248  Sum_probs=42.3

Q ss_pred             eeecCcEEEEeeC-CCCEEEeecCCCCcc---eEEeccCCCCEEEEEEcCCCCEEEEEeC-CCCEEEEeC
Q psy11876          2 IFLDTRVFATCSD-DTTIALWDARNLKTR---VRTLQGHSNWVKNIEFSSKDNLLVTAGF-DGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~   66 (68)
                      ++|++++++++.. ++.+.+|++......   ...... ......+.++|+++.+..+.. ++.+.+|++
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            5688888888754 578999988542211   111111 123457889999877776554 789999975

>KOG1524|consensus

Probab=97.86  E-value=2.8e-05  Score=41.10  Aligned_cols=57  Identities=25%  Similarity=0.423  Sum_probs=46.6

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .++.++.||...+.+-.  .+......+|...+.+-.|+|++.-+++.+.||.+.+|..
T Consensus        77 ~~~i~s~DGkf~il~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr  133 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKS--ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR  133 (737)
T ss_pred             eEEEEcCCceEEEeccc--chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec
Confidence            57888889988876543  3444456789999999999999999999999999999974

>KOG4227|consensus

Probab=97.86  E-value=0.00017  Score=37.14  Aligned_cols=65  Identities=31%  Similarity=0.546  Sum_probs=51.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC----C------------------cceEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL----K------------------TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG   59 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~----~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (68)
                      .|.+..-+++|+.+..+.+|.+...    +                  ..+..+.+|..-+..+.|++...++.+.+-..
T Consensus       300 ~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~  379 (609)
T KOG4227|consen  300 TFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVEN  379 (609)
T ss_pred             eeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhh
Confidence            4556667999999999999998521    1                  12335678888888999999988888888899


Q ss_pred             CEEEEeC
Q psy11876         60 SIYTWDI   66 (68)
Q Consensus        60 ~i~~~~~   66 (68)
                      .+++|..
T Consensus       380 ~~KlWS~  386 (609)
T KOG4227|consen  380 SFKLWSD  386 (609)
T ss_pred             heecccc
Confidence            9999964

>KOG4532|consensus

Probab=97.82  E-value=0.00065  Score=33.49  Aligned_cols=66  Identities=14%  Similarity=0.065  Sum_probs=47.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcce-E-EeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRV-R-TLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .++++++.++.+....|-.|.+....... . .....+..-.+..|+.....++.+..||++.+||++
T Consensus       166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR  233 (344)
T KOG4532|consen  166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR  233 (344)
T ss_pred             EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence            45677777777777778888876532222 2 222344445677888888899999999999999987

>KOG2695|consensus

Probab=97.81  E-value=0.00015  Score=36.65  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=46.1

Q ss_pred             CcEEEEeeCCCCEEEeecCCC----CcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNL----KTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++.+..|.++|.|...|++..    .++...+ -|...+.+++.-. .++.+++.+.+|+|.+||.+
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            678889999999999998752    2333333 3666677776544 67889999999999999976

>KOG1963|consensus

Probab=97.79  E-value=0.00058  Score=37.69  Aligned_cols=63  Identities=16%  Similarity=0.132  Sum_probs=50.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++|..+++|+.++.+-+|...+.++  ..+.--...+..+.++|++...+....|..+.+-..
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCCc--ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            678999999999999999999987432  223334567889999999998888888988877543

>KOG4547|consensus

Probab=97.76  E-value=0.00033  Score=37.07  Aligned_cols=61  Identities=26%  Similarity=0.431  Sum_probs=46.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-----CCEEE-EEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-----DNLLV-TAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~i~~~~   65 (68)
                      ++||+.++++++  +.+++|++.+ +..+..+.+|..+|.+++|-..     +.++. +...+..+.+|-
T Consensus       152 is~D~~~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  152 ISPDGKILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             EcCCCCEEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            567888899888  4899999988 6778899999999999888654     44443 334456666664

>KOG2041|consensus

Probab=97.66  E-value=0.00032  Score=38.75  Aligned_cols=63  Identities=21%  Similarity=0.313  Sum_probs=50.1

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCC-----C---------cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNL-----K---------TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+.++|+.|+.||.+++..+.+.     .         ..-.+..+|...|.-+.|+.+.+.+.+...+|.|.+|.+
T Consensus        24 ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml  100 (1189)
T KOG2041|consen   24 KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML  100 (1189)
T ss_pred             ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence            35678999999999999876531     0         112245688899999999999999999999999999965

>KOG0280|consensus

Probab=97.66  E-value=0.00072  Score=33.59  Aligned_cols=64  Identities=27%  Similarity=0.306  Sum_probs=45.5

Q ss_pred             ecCcEEEEeeCCCCEEEeecCC-CCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARN-LKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+..++++..+|.+.+-.... .-......+.|+-+.+..+++.. .+.+.+|+.|+.+..||.+
T Consensus       131 ~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R  196 (339)
T KOG0280|consen  131 TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR  196 (339)
T ss_pred             ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence            3455677888888887433322 11223356788888888888764 5788999999999999987

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.66  E-value=0.0017  Score=33.62  Aligned_cols=61  Identities=20%  Similarity=0.195  Sum_probs=37.8

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCCEEEE
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA-GFDGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~   64 (68)
                      ++|+++.++..+.+   ..+.+|++.. .... ............+|+|+++.++.. ..++...+|
T Consensus       211 wSPDG~~la~~s~~~~~~~i~i~dl~t-g~~~-~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        211 WSPDGSKLAYVSFENKKSQLVVHDLRS-GARK-VVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             EcCCCCEEEEEEecCCCcEEEEEeCCC-CceE-EEecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence            57899888776543   3588899865 2211 122122223467899999877654 467766665

>KOG4640|consensus

Probab=97.62  E-value=0.001  Score=35.95  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=43.8

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCE-EEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWV-KNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |.-..||.+..+|.+.+.+..-  ..+..+.-+...+ .+++|.|+++.++.+-.||++.+-|..
T Consensus        30 P~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   30 PKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             CccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence            3344677777777777766653  2233444233334 499999999999999999999999875

>KOG1272|consensus

Probab=97.60  E-value=0.0003  Score=36.72  Aligned_cols=59  Identities=24%  Similarity=0.461  Sum_probs=38.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEE
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      +.++|++.++.+.|..+++||++... ....... ..+...++++..+  ++.++....+.+|
T Consensus       301 v~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  301 VDRGGRYMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             ECCCCcEEeecccccceeEeeecccc-ccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence            45788999999999999999998733 2223322 2334555665544  3344455666676

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.57  E-value=0.00048  Score=25.06  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=26.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         37 SNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ...+..++|+|...+++.++.+|.+.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3458899999999999999999999998763

>KOG4532|consensus

Probab=97.56  E-value=0.002  Score=31.92  Aligned_cols=65  Identities=25%  Similarity=0.227  Sum_probs=42.5

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcce----EEeccCCCCEEEEEEcCCCC--EEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRV----RTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~   67 (68)
                      +.+...+|++..||.+.+||.+....+.    ..-..|.+.+....|++.+.  ++.-.-.-+.+.+.|++
T Consensus       212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            3456689999999999999997543322    22334667788888887542  33333234677777765

>KOG1517|consensus

Probab=97.56  E-value=0.00074  Score=38.69  Aligned_cols=59  Identities=24%  Similarity=0.379  Sum_probs=37.2

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEc-CCCCEEEEEeCCCCEEEEeCC
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFS-SKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+.+++....|++||.... ....-+ .+....+..+.-. ..+..++.|..||.+++||.+
T Consensus      1179 ~Ll~tGd~r~IRIWDa~~E-~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKE-QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred             eEEecCCeeEEEEEecccc-eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecc
Confidence            4444554789999999763 222222 2223333444322 246899999999999999976

>KOG2321|consensus

Probab=97.53  E-value=0.00098  Score=35.87  Aligned_cols=55  Identities=13%  Similarity=0.229  Sum_probs=41.1

Q ss_pred             eeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         12 CSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        12 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.....++-+++.. +.-+..+......++.+..++.+.++++|+.+|.+-.||.+
T Consensus       151 ~gsg~evYRlNLEq-GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR  205 (703)
T KOG2321|consen  151 VGSGSEVYRLNLEQ-GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR  205 (703)
T ss_pred             eecCcceEEEEccc-cccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence            33334555556655 44455566666788999999999999999999999999976

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.47  E-value=0.0019  Score=33.42  Aligned_cols=64  Identities=17%  Similarity=0.133  Sum_probs=38.4

Q ss_pred             eeecCcEEE-EeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCCEEEEe
Q psy11876          2 IFLDTRVFA-TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~   65 (68)
                      ++||++.++ +.+.++...+|.+.........+..+........|+|+++.++..+ .++...+|.
T Consensus       247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        247 WSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence            578887765 5677777777765432222334443433345667999998766444 345566664

>KOG4547|consensus

Probab=97.45  E-value=0.0026  Score=33.95  Aligned_cols=59  Identities=19%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      -..|.+++.|+.+..|+... ...+..+.+....+.+++.+|++..+.++  .++|.+||+.
T Consensus       114 ~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~  172 (541)
T KOG4547|consen  114 LGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGKILLTA--SRQIKVLDIE  172 (541)
T ss_pred             cCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCCEEEec--cceEEEEEcc
Confidence            46789999999999999877 56677777777778899999998777665  4678888865

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.42  E-value=0.0041  Score=32.25  Aligned_cols=62  Identities=16%  Similarity=0.131  Sum_probs=39.5

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~   65 (68)
                      ++||++.++..+.+   ..+.+|++.. +.. ..+...........|+|+++.++ +.+.++...+|.
T Consensus       203 wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        203 WSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            57899887766543   3478888865 322 22332334445788999987665 566777766664

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.41  E-value=0.0026  Score=31.39  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=28.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         36 HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ....+..+.++|++..+++...+|.+.+|++.
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence            35678899999999999999999999999875

>KOG4497|consensus

Probab=97.41  E-value=0.0018  Score=32.93  Aligned_cols=64  Identities=23%  Similarity=0.367  Sum_probs=43.8

Q ss_pred             CeeecCcEEEEeeCC--CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          1 MIFLDTRVFATCSDD--TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++|+.++++-...  +.+.+|+++..+  .........+|..+.|.|....++.+.....+.+|..
T Consensus       325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~--l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  325 AFSCDSTYAATRNDKYPNALWLWDLQNLK--LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             eecCCceEEeeecCCCCceEEEEechhhh--hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence            356777777776554  566788887622  2233345667889999998766777766777888864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.35  E-value=0.006  Score=32.55  Aligned_cols=65  Identities=14%  Similarity=0.184  Sum_probs=48.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC----CEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG----SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~   67 (68)
                      .+++|..++.+.....+.+.++.+ +.....-.....-+..+.|+|++++++-+-.++    .|+++|+.
T Consensus       409 vs~dGK~~vvaNdr~el~vididn-gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         409 VSPDGKKVVVANDRFELWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             EcCCCcEEEEEcCceEEEEEEecC-CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence            467888888888888888888887 454444445566788999999999988765554    46677653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.34  E-value=0.0094  Score=34.51  Aligned_cols=65  Identities=15%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec-------------cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ-------------GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.++++.+++-..++.|++|+... ........             +.-.....+++.++++.+++-+.++.|++||+.
T Consensus       811 vd~dG~LYVADs~N~rIrviD~~t-g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        811 CAKDGQIYVADSYNHKIKKLDPAT-KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             EeCCCcEEEEECCCCEEEEEECCC-CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            456677777777788999999865 22221110             111245678889999888888889999999975

>KOG0322|consensus

Probab=97.24  E-value=0.00045  Score=33.88  Aligned_cols=60  Identities=13%  Similarity=0.247  Sum_probs=44.6

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQ-GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..+.+|...|.+.+|.+.+ ......+. .+...+..++..|+ ..+.+.+.|..+.+|++.
T Consensus        25 ~~rL~sg~~~G~V~~w~lqt-~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen   25 NERLMSGLSVGIVKMWVLQT-ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             chhhhcccccceEEEEEeec-CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence            34588899999999999988 45555565 45566777776665 456777889999999763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.20  E-value=0.008  Score=30.84  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=41.3

Q ss_pred             cEE-EEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          7 RVF-ATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++ ++-..++.+.+.|..+ ......+.........+.++++++++...+.|+.+.++|+.+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~   67 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT   67 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS
T ss_pred             cEEEEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc
Confidence            444 4455578999999987 555666665444334567899999888888999999999753

...

>KOG1409|consensus

Probab=97.15  E-value=0.0091  Score=30.57  Aligned_cols=58  Identities=21%  Similarity=0.335  Sum_probs=44.8

Q ss_pred             EEEeeCCCCEEEeecCC-CCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          9 FATCSDDTTIALWDARN-LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         9 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ...|...+.+....... ...++..+.+|...+.+.+|.+....+.++..|..+.+||+
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI  226 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence            34555556666555432 23567778899999999999999999999999999999986

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.14  E-value=0.0062  Score=34.21  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEE
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      ...|+.|+.+|.|++|+-.. .+....+.+...+|..+..+.+|+++++-+ +..+.+.
T Consensus       588 ~G~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi  644 (794)
T PF08553_consen  588 DGYIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI  644 (794)
T ss_pred             CceEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence            46799999999999998533 334444556678999999999998876655 3334443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1334|consensus

Probab=97.13  E-value=0.00084  Score=35.37  Aligned_cols=63  Identities=27%  Similarity=0.345  Sum_probs=46.2

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEe
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~   65 (68)
                      ...|..+++|+.|..+-+|++...........+|..-+.-..|.|.  .+.+++++.|+++++-.
T Consensus       151 N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  151 NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             cccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            3457789999999999999997644444445677776666667773  36778888898887643

>KOG0309|consensus

Probab=97.12  E-value=0.0027  Score=35.45  Aligned_cols=61  Identities=25%  Similarity=0.510  Sum_probs=50.5

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..+++++.|..+..|+++....+++....-......++|+.....+...+....+.+||.+
T Consensus       128 dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  128 DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            4689999999999999998778887777666666788998877677777888999999876

>KOG2139|consensus

Probab=97.07  E-value=0.012  Score=30.45  Aligned_cols=56  Identities=16%  Similarity=0.128  Sum_probs=38.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFD   58 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   58 (68)
                      .+||+..+..+..|..-++|+... .+...........+....|+|+++.+ .+++..
T Consensus       246 wSPdgd~lfaAt~davfrlw~e~q-~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs  302 (445)
T KOG2139|consen  246 WSPDGDVLFAATCDAVFRLWQENQ-SWTKERWILGSGRVQTACWSPCGSFLLFACSGS  302 (445)
T ss_pred             EcCCCCEEEEecccceeeeehhcc-cceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence            579999999999999999996543 22222333344478888999988644 444433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.05  E-value=0.01  Score=29.42  Aligned_cols=65  Identities=20%  Similarity=0.269  Sum_probs=42.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC-CcceEEeccCCC---CEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL-KTRVRTLQGHSN---WVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+.||+.+|.- .|..+-+...+.. ...+.++....+   +=..++|+|++..++.+...|+|.++|+-
T Consensus         5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~   73 (282)
T PF15492_consen    5 LSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM   73 (282)
T ss_pred             ecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc
Confidence            45567655544 4667777666542 223334433222   12588999999999999999999999863

>KOG4714|consensus

Probab=97.04  E-value=0.0021  Score=31.68  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=23.9

Q ss_pred             CEEEEEEcCC-CCEEEEEeCCCCEEEEeCCC
Q psy11876         39 WVKNIEFSSK-DNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        39 ~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+.+++-+|. ++.+.+++.+|.+.+||.++
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn  211 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARN  211 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccc
Confidence            3788888885 46777888899999999863

>KOG2079|consensus

Probab=97.00  E-value=0.0022  Score=36.85  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=44.2

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .++.|+..|.+...+...+-.+...-.....+|.+++++.+++.+..|-.+|.+.+||++.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~  161 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR  161 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence            4677777777777666542222223333467899999999999999999999999999863

>KOG3621|consensus

Probab=96.98  E-value=0.0034  Score=34.49  Aligned_cols=64  Identities=13%  Similarity=0.129  Sum_probs=45.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEE-----eccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRT-----LQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++++..+.+.|+..+.|.++.......+...     -..|...|.+++|++++..+.+|...|++..-.
T Consensus        84 vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen   84 VSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             ecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence            3456667788888899998877542111111     123577899999999999999999999887543

>KOG3617|consensus

Probab=96.94  E-value=0.0028  Score=36.04  Aligned_cols=59  Identities=15%  Similarity=0.268  Sum_probs=47.0

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .++.|...|.+.+|...+ ...-.....|..++..+.|++++..++++...|.+.+|.+.
T Consensus        73 vLa~gwe~g~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   73 VLAQGWEMGVSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HHhhccccceeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            467777778888888765 33333445688899999999999999999999999999653

>KOG1240|consensus

Probab=96.93  E-value=0.013  Score=34.48  Aligned_cols=65  Identities=12%  Similarity=0.282  Sum_probs=44.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEcC---CCCEEEE-Ee-CCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFSS---KDNLLVT-AG-FDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-~~-~~~~i~~~~~~   67 (68)
                      ++|.++.++.|...|.+-+||++. +.++... ..+..++..+..+|   +....++ +. ..+.+.+|++.
T Consensus      1203 idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             ecCCceEEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence            567788999999999999999987 4444433 34445666666655   2233433 33 45789999875

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.91  E-value=0.018  Score=30.01  Aligned_cols=64  Identities=16%  Similarity=0.080  Sum_probs=35.3

Q ss_pred             eeecCcEEEEee-CCCC--EEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-C--CEEEEeCC
Q psy11876          2 IFLDTRVFATCS-DDTT--IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD-G--SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~i~~~~~~   67 (68)
                      ++||++.++..+ .++.  +..++... .. ...+..........+|+|+++.++....+ +  .+.+|+..
T Consensus       299 ~spDG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        299 WAPDGKSIYFTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence            567887766554 4455  44444433 22 22222222333467899999877655433 2  57788764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.90  E-value=0.019  Score=29.98  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=36.6

Q ss_pred             eeecCcEE-EEeeCCCC--EEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCC--CEEEEeC
Q psy11876          2 IFLDTRVF-ATCSDDTT--IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDG--SIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~~~~~   66 (68)
                      ++||++.+ ++.+.++.  +.+++... . ....+..+........|+|+++.++..+ .++  .+.+++.
T Consensus       253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~-~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        253 FSPDGRKVVMSLSQGGNTDIYTMDLRS-G-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             ECCCCCEEEEEEecCCCceEEEEECCC-C-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            57888765 45565655  44556654 2 2334444444445678999988766554 333  4555554

>KOG1064|consensus

Probab=96.86  E-value=0.0061  Score=37.26  Aligned_cols=61  Identities=16%  Similarity=0.299  Sum_probs=47.8

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ....++|+.||.+++|.... ...+..+ ......+..+.++.+|..+..+..||.+.+|...
T Consensus      2220 ~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             CceEEecCCCceEEEEeccC-CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            35678999999999999876 3444443 3344677888899999999999999999999753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=96.83  E-value=0.022  Score=29.76  Aligned_cols=61  Identities=11%  Similarity=0.071  Sum_probs=36.9

Q ss_pred             eeecCcEEEEe-eCCC--CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCCEEEE
Q psy11876          2 IFLDTRVFATC-SDDT--TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF-DGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~~~~-~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~   64 (68)
                      ++||++.++.. +.++  .+.+|+... .. ...+......+....|+|+++.++..+. ++...+|
T Consensus       250 ~SPDG~~La~~~~~~g~~~I~~~d~~t-g~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy  314 (429)
T PRK03629        250 FSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY  314 (429)
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCC-CC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence            57898877654 4444  466777765 22 3333334445567899999987765543 4444555

>KOG1354|consensus

Probab=96.78  E-value=0.019  Score=29.57  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCc----ceEEeccC------------CCCEEEEEEcCCC--CEEEEEeCCCCEEEE
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKT----RVRTLQGH------------SNWVKNIEFSSKD--NLLVTAGFDGSIYTW   64 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~~~~i~~~   64 (68)
                      ...|..+++|..+|.|-++.-.....    ....++.|            ...+..+.|.+++  ..+...+.|.++.+|
T Consensus        34 ~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlW  113 (433)
T KOG1354|consen   34 DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLW  113 (433)
T ss_pred             ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeee
Confidence            34688999999999999886543221    12223333            2456788888753  567777889999999


Q ss_pred             eCC
Q psy11876         65 DIN   67 (68)
Q Consensus        65 ~~~   67 (68)
                      .++
T Consensus       114 Ki~  116 (433)
T KOG1354|consen  114 KIR  116 (433)
T ss_pred             eee
Confidence            764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.73  E-value=0.027  Score=29.41  Aligned_cols=64  Identities=23%  Similarity=0.237  Sum_probs=38.7

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--CEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDG--SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~   67 (68)
                      .+|+++.++..+.+   ..+.+|++.. ... ..+...........|+|+++.++ +.+.++  .|.+||+.
T Consensus       211 wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~  280 (433)
T PRK04922        211 WSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG  280 (433)
T ss_pred             CCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence            46888877766533   3577788765 222 22333333344678999987664 445444  57777764

>KOG2066|consensus

Probab=96.72  E-value=0.022  Score=32.08  Aligned_cols=58  Identities=17%  Similarity=0.337  Sum_probs=40.7

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC-----CCEEEEEeCCCCEEEEe
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK-----DNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~   65 (68)
                      +|..+++|+.||.+.+....+ .....+ .....++.+++++|+     .+.+++|+..| +.++.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~-~~~~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFT-DDEITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             CCceEEEecCCCcEEEeeccC-Ccccee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence            578999999999999877755 222222 234567788888885     46778888777 65553

>KOG0309|consensus

Probab=96.63  E-value=0.0016  Score=36.22  Aligned_cols=59  Identities=29%  Similarity=0.541  Sum_probs=45.4

Q ss_pred             EEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+.+..+.+.+|+.+....+.....+|...+..+.+.. ....+.+++.|+++..|++.
T Consensus       173 vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            444556678899999876677777888877777877765 34567888899999999975

>PRK03629 tolB translocation protein TolB; Provisional

Probab=96.54  E-value=0.039  Score=28.88  Aligned_cols=66  Identities=15%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             eeecCcEEEEeeC-CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---CCEEEEeCC
Q psy11876          2 IFLDTRVFATCSD-DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD---GSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~   67 (68)
                      ++|+++.++..+. ++...+|.+.........+...........|+|+++.++....+   ..+.+||+.
T Consensus       294 wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        294 WFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             ECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence            5788887755554 44555664432111222332233334567899998877655433   346667754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.48  E-value=0.04  Score=28.35  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=38.5

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--CEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDG--SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~   67 (68)
                      ++|+++.++....+   ..+.+|++.. ... ..............|+|+++.++ +...++  .+.+|++.
T Consensus       197 ~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~  266 (417)
T TIGR02800       197 WSPDGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD  266 (417)
T ss_pred             CCCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence            46788877766543   3677888865 222 22223334455678999987654 444443  57777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2079|consensus

Probab=96.45  E-value=0.035  Score=32.49  Aligned_cols=58  Identities=19%  Similarity=0.297  Sum_probs=39.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCE---EEEEEcCCCCEEEEEeCCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWV---KNIEFSSKDNLLVTAGFDGS   60 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   60 (68)
                      ++.+|..++.|-.+|.|.+||... ..+...+..+..+.   -.+.+..++..+.++...|.
T Consensus       138 fn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  138 FNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             ecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            566889999999999999999976 45555555554433   33334445556777766665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.44  E-value=0.043  Score=28.23  Aligned_cols=64  Identities=22%  Similarity=0.257  Sum_probs=36.5

Q ss_pred             eeecCcEEEEee-CCCC--EEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC---CEEEEeCC
Q psy11876          2 IFLDTRVFATCS-DDTT--IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG---SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~   67 (68)
                      ++++++.++..+ ..+.  +.+++... .. ...+..+........|+|++..++....++   .+.++|+.
T Consensus       285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       285 WSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence            456777665544 3443  45555543 22 223333334456778999988877766554   56666653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.43  E-value=0.046  Score=28.43  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCC--CEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDG--SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~   67 (68)
                      .+|+++.++..+.+   ..+.++++.. +.. ..+...........|+|+++.++ +...++  .+.++|..
T Consensus       206 wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        206 WSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             ECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            46888877655433   3466777765 222 22222233344678999987665 444444  46666654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.37  E-value=0.046  Score=27.76  Aligned_cols=65  Identities=22%  Similarity=0.323  Sum_probs=41.5

Q ss_pred             eeecCcEEEEeeCC-CCEEEeecCCC-Cc--ceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDD-TTIALWDARNL-KT--RVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-~~v~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~   66 (68)
                      ++|++++++++.+. ..|.++++... +.  .+............+.++|+++++..+. .++.+.+|++
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            67899888777655 56888998431 11  2222333344468899999998777665 5578888864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.30  E-value=0.091  Score=30.47  Aligned_cols=61  Identities=13%  Similarity=0.207  Sum_probs=43.0

Q ss_pred             eecCcEEEEeeCCCCEEEe----ecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          3 FLDTRVFATCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      .++...++.+..+|.+.+.    +...  ......-.-..++.+++|+|++..++..+.++++.+..
T Consensus        84 l~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   84 LADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             ccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            3456678888888888887    3322  12222233466899999999999998888888887664

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.27  E-value=0.062  Score=28.26  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=37.8

Q ss_pred             eeecCcEEEEee-CCCCEEEeecCC--CCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---CCEEEEeCC
Q psy11876          2 IFLDTRVFATCS-DDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD---GSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~   67 (68)
                      ++||++.|+..+ .++...+|....  .......+......+....|+|+++.++....+   ..+.+||..
T Consensus       288 wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        288 FSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            578887665444 556555665421  112223333333445677899999877655432   357777754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.26  E-value=0.054  Score=27.44  Aligned_cols=55  Identities=22%  Similarity=0.275  Sum_probs=39.6

Q ss_pred             CeeecCcEEEEeeCC-----CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy11876          1 MIFLDTRVFATCSDD-----TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA   55 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (68)
                      ++++|++.+++.-.|     |.|-+|+.......+..+..+.-..+-+.+.|++..++.+
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA  116 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence            478889888876555     7889999984244566677776667888889988554443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.23  E-value=0.057  Score=27.42  Aligned_cols=56  Identities=23%  Similarity=0.304  Sum_probs=41.8

Q ss_pred             CeeecCcEEEEeeCC-----CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy11876          1 MIFLDTRVFATCSDD-----TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      ++++|+.+++..-.|     |.|-+|+.+..-..+..+..|.-..+.+.|.++++.++...
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            478889888876655     67889998753344556777877788899999998776553

>KOG2444|consensus

Probab=96.20  E-value=0.039  Score=26.83  Aligned_cols=61  Identities=13%  Similarity=0.214  Sum_probs=37.1

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCC-CCEEEEEEcCCCCEEEEE--eCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHS-NWVKNIEFSSKDNLLVTA--GFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~   67 (68)
                      ++..+++..++.++.|++... ......-.|. ........+.....+...  +.+..+..|++.
T Consensus       114 ~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  114 SSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cceeEEeccCCceeeeccccC-ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            347889999999999998763 3333333343 333333344444555555  677777788754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.99  E-value=0.085  Score=27.27  Aligned_cols=65  Identities=12%  Similarity=0.195  Sum_probs=43.9

Q ss_pred             eeecCcEEEEeeC----------CCCEEEeecCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCCEE
Q psy11876          2 IFLDTRVFATCSD----------DTTIALWDARNLKTRVRTLQGH-------SNWVKNIEFSSKDNLLVTAGF--DGSIY   62 (68)
Q Consensus         2 ~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~i~   62 (68)
                      ++||++.++.+..          +..+.+||..+ ......+..-       ......++++++++.+.....  +..+.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence            6788887777666          67899999987 4444444321       112347788999987776653  57788


Q ss_pred             EEeCC
Q psy11876         63 TWDIN   67 (68)
Q Consensus        63 ~~~~~   67 (68)
                      +.|+.
T Consensus       132 VvD~~  136 (352)
T TIGR02658       132 VVDLE  136 (352)
T ss_pred             EEECC
Confidence            87764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3621|consensus

Probab=95.89  E-value=0.029  Score=31.20  Aligned_cols=66  Identities=15%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +...+..++.|+.-|.+.+|+-....-...+..+....+....+++...+++.++..+.+.++.+.
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence            345677899999999999988754222222333344445566677777788888888888887643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=95.76  E-value=0.046  Score=29.72  Aligned_cols=32  Identities=28%  Similarity=0.234  Sum_probs=28.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         36 HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ....+.+.+++|....++.|+.||.+.+||..
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~  289 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTT  289 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcC
Confidence            45667888999999999999999999999964

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.72  E-value=0.12  Score=26.96  Aligned_cols=63  Identities=17%  Similarity=0.201  Sum_probs=34.8

Q ss_pred             eeecCcEEE-EeeCCC--CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCC--CEEEEeC
Q psy11876          2 IFLDTRVFA-TCSDDT--TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDG--SIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~~~~~   66 (68)
                      ++||++.++ +.+.++  .+.+++... . ....+..+........|+|++..++..+ .++  .+.+++.
T Consensus       250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~-~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~  318 (430)
T PRK00178        250 WSPDGSKLAFVLSKDGNPEIYVMDLAS-R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV  318 (430)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCC-C-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            578887665 455555  456667654 2 2233333433345668999987665443 333  3444443

>KOG2395|consensus

Probab=95.59  E-value=0.12  Score=28.32  Aligned_cols=50  Identities=14%  Similarity=0.223  Sum_probs=36.5

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      +..|+.|+.+|.|++|+- ........+.+...+|..+....++.++++-+
T Consensus       441 sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  441 SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            467999999999999986 32333444566677888888888887766554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.52  E-value=0.16  Score=26.95  Aligned_cols=61  Identities=16%  Similarity=0.174  Sum_probs=33.7

Q ss_pred             eeecCcEEE-EeeCCCC--EEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCCEEEE
Q psy11876          2 IFLDTRVFA-TCSDDTT--IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~   64 (68)
                      ++||++.++ +.+.++.  +.+++... . .......+........|+|+++.++..+ .++...+|
T Consensus       269 wSPDG~~La~~~~~~g~~~Iy~~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy  333 (448)
T PRK04792        269 FSPDGKKLALVLSKDGQPEIYVVDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIY  333 (448)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEEECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            578887665 4566665  44555544 2 2333333333445678999987665443 34443333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.49  E-value=0.16  Score=26.91  Aligned_cols=63  Identities=25%  Similarity=0.242  Sum_probs=35.2

Q ss_pred             eeecCcEEEEeeC-CC--CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCC--EEEEeC
Q psy11876          2 IFLDTRVFATCSD-DT--TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDGS--IYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~   66 (68)
                      ++||++.++..+. ++  .+.++++.. ... ..............|+|+++.++ +.+.++.  |.++|+
T Consensus       225 wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        225 WSPDGRKLAYVSFENRKAEIFVQDIYT-QVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             ECCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            5788887765543 33  466667654 222 22222222234678999987665 4555564  555554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.45  E-value=0.16  Score=26.67  Aligned_cols=49  Identities=22%  Similarity=0.356  Sum_probs=33.0

Q ss_pred             CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---CCCEEEEeCC
Q psy11876         17 TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF---DGSIYTWDIN   67 (68)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~   67 (68)
                      .+.+++...  .....+..+...+...+|+|+++.++..+.   +..+.+||+.
T Consensus       183 ~l~~~d~dg--~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~  234 (435)
T PRK05137        183 RLAIMDQDG--ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE  234 (435)
T ss_pred             EEEEECCCC--CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC
Confidence            455555543  334455566777889999999987766543   3678888864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.23  E-value=0.23  Score=27.08  Aligned_cols=64  Identities=19%  Similarity=0.252  Sum_probs=40.1

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC------CCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF------DGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~   67 (68)
                      |+|++++++.++.+   |.+-+|+..........+.+..  ..-..|+|++..+.+...      |..+.+||+.
T Consensus       323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             ccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            67888888887766   5667777654212222333222  245578999887766543      6678899864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=95.22  E-value=0.33  Score=28.80  Aligned_cols=66  Identities=14%  Similarity=0.225  Sum_probs=40.8

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCCcceEE------------eccC--------CCCEEEEEEcCCCCEEEEEeCCCC
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLKTRVRT------------LQGH--------SNWVKNIEFSSKDNLLVTAGFDGS   60 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   60 (68)
                      +++++. ++++-..++.|++|+..........            +-..        -.....+++.+++..+++-..++.
T Consensus       747 vspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r  826 (1057)
T PLN02919        747 LSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK  826 (1057)
T ss_pred             EeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE
Confidence            456766 4455555688999987652211100            0000        012346778888888888888999


Q ss_pred             EEEEeCC
Q psy11876         61 IYTWDIN   67 (68)
Q Consensus        61 i~~~~~~   67 (68)
                      |++||..
T Consensus       827 IrviD~~  833 (1057)
T PLN02919        827 IKKLDPA  833 (1057)
T ss_pred             EEEEECC
Confidence            9999864

>KOG2114|consensus

Probab=95.13  E-value=0.12  Score=29.72  Aligned_cols=64  Identities=19%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCC-EEEEEEcCCCCEEEEEeCCC-----CEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNW-VKNIEFSSKDNLLVTAGFDG-----SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~   67 (68)
                      +++.+..++.|+.+|.|.+++-.-  .....+.++... +..+....+...+++.+.|.     .+++|++.
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             EcCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            456778899999999887765532  222445555544 33332222335666666653     47899875

>KOG4649|consensus

Probab=94.99  E-value=0.21  Score=25.26  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=37.7

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCE-EEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWV-KNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++.|...+.+++.+..+ +.....+..- ..| ......+++.++-++++|+.+...|++
T Consensus        63 gdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~  123 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKT-GSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPK  123 (354)
T ss_pred             CCEEEEEEccCcEEEEEecc-hhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence            45677777778888777766 3333333221 122 222345677888899999988887765

>KOG1354|consensus

Probab=94.94  E-value=0.24  Score=25.87  Aligned_cols=64  Identities=17%  Similarity=0.299  Sum_probs=43.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCC------------CCE---EEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHS------------NWV---KNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      |+.+|+++.+-+. -.+++||+.-...++.+...|.            ..+   .-++|+.+...+++|+....+++++.
T Consensus       280 Fs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  280 FSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             EccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence            5667787776554 5899999953345555554442            111   34568888889999999999999873

>KOG2066|consensus

Probab=94.89  E-value=0.33  Score=27.94  Aligned_cols=53  Identities=15%  Similarity=0.187  Sum_probs=36.6

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+.+++.|..+|.+++.+..-  .+ .+...|+..      ..+|.++++|+.||++.+-.+
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL  100 (846)
T ss_pred             hcceeeeccccceEEEEecCC--cc-ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence            356788899999988877653  22 333344332      457889999999998887643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=94.69  E-value=0.29  Score=25.47  Aligned_cols=64  Identities=19%  Similarity=0.261  Sum_probs=42.0

Q ss_pred             eeecCcEEEEeeC----------CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEe-CCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSD----------DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAG-FDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~   67 (68)
                      +.++++.++....          .+.+.++|..+ ......+.. ...++.++++++++ ++.... .++.+.+.|..
T Consensus       255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             EcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence            4566766666421          14677788776 444444443 34678999999987 666555 57889998864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2377|consensus

Probab=94.52  E-value=0.39  Score=26.25  Aligned_cols=65  Identities=11%  Similarity=0.044  Sum_probs=43.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCC--CCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      |+.|.+....+...|-..-|....  ...++.......+++.++.|+++++.++..-.+..+.+++.
T Consensus        29 FfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf   95 (657)
T KOG2377|consen   29 FFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNF   95 (657)
T ss_pred             eeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEec
Confidence            445544433334444445454432  24566666667779999999999999999888888888765

>KOG3914|consensus

Probab=94.30  E-value=0.39  Score=25.32  Aligned_cols=38  Identities=24%  Similarity=0.379  Sum_probs=31.2

Q ss_pred             ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876         29 RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +.....+|-..+..++++|+.+.++++..|..|++-.+
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y  180 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY  180 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence            34445577788899999999999999999999998654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.21  E-value=0.11  Score=18.64  Aligned_cols=29  Identities=28%  Similarity=0.310  Sum_probs=19.1

Q ss_pred             CEEEEEEcCCCC---EEEEEeCCCCEEEEeCC
Q psy11876         39 WVKNIEFSSKDN---LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        39 ~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~   67 (68)
                      .+.+++|+|.+.   +++-.=..+.+.++|.+
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            356777886433   55555556888888876

It contains a characteristic DLL sequence motif.

>KOG1008|consensus

Probab=94.07  E-value=0.06  Score=30.02  Aligned_cols=62  Identities=24%  Similarity=0.412  Sum_probs=37.7

Q ss_pred             cCcEEEEeeCCCCEEEee-cCCCCcceEEeccCCC----CEEEEEEcCCC-CEEEEEeC-CCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWD-ARNLKTRVRTLQGHSN----WVKNIEFSSKD-NLLVTAGF-DGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~-~~~i~~~~~~   67 (68)
                      ..+.+++-+ |+.+-+|| .++...++..+.....    .+..++|+|.. -.++++.. .++|+++++.
T Consensus       207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            344555555 89999999 4443444443333333    47889999953 33444444 4789888864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.02  E-value=0.49  Score=25.43  Aligned_cols=55  Identities=24%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      |..++..+.+ .+.+||+.+ ...+..+...  .+..+.|++++.+++-.+.+ .+.+++
T Consensus       117 G~LL~~~~~~-~i~~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWET-GKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhH-cceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            5556666544 799999987 4555555433  37899999999888877644 444543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.96  E-value=0.34  Score=23.42  Aligned_cols=62  Identities=15%  Similarity=0.285  Sum_probs=39.1

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceE-----E-ec-------cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVR-----T-LQ-------GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+++++.+-..+|.+++||+...+....     . +.       .....+..+.+..+|..+++.+ ++....|+.
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            4667788888899999999976321110     1 11       2334566777777787777665 355666653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1912|consensus

Probab=93.96  E-value=0.69  Score=26.98  Aligned_cols=60  Identities=18%  Similarity=0.331  Sum_probs=41.9

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC------------EEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN------------LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~~~~~   67 (68)
                      +..|+-|+- ..|.+-|... .+.+..+.-|...|..+.|.|...            .++++...|.|.+||..
T Consensus        26 ~GLiAygsh-slV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~   97 (1062)
T KOG1912|consen   26 SGLIAYGSH-SLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV   97 (1062)
T ss_pred             cceEEEecC-ceEEEEehhh-hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence            345666653 5677778776 455666777888899999987421            34566677999999864

>KOG1832|consensus

Probab=93.95  E-value=0.11  Score=30.53  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=39.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCE-EEEEeCCC-CEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNL-LVTAGFDG-SIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~~~   66 (68)
                      |+.+.++++.|+..|.+++++..+ +......-+|...+..+.=+.++.. +.+.+... ..-+|++
T Consensus      1109 fs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1109 FSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             eecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            455678999999999999999876 4444444567766666654445433 33333332 3345554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.78  E-value=0.58  Score=25.50  Aligned_cols=29  Identities=24%  Similarity=0.483  Sum_probs=21.1

Q ss_pred             EEEEEEcC----CCCEEEEEeCCCCEEEEeCCC
Q psy11876         40 VKNIEFSS----KDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        40 ~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ....+...    +...+++.+.|+++++||+.+
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t  249 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLET  249 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTT
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCC
Confidence            34445544    567889999999999999864

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4640|consensus

Probab=93.74  E-value=0.25  Score=27.60  Aligned_cols=44  Identities=20%  Similarity=0.083  Sum_probs=28.6

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEc
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS   46 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (68)
                      .|||+.++.|-.||.+++.|..+..............+....|.
T Consensus        71 ~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   71 RPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             cCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence            36899999999999999999976332222122233445555554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=93.55  E-value=0.59  Score=24.83  Aligned_cols=53  Identities=9%  Similarity=-0.018  Sum_probs=27.6

Q ss_pred             eeecCcE---EEEeeCCCCEEEe--ecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy11876          2 IFLDTRV---FATCSDDTTIALW--DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         2 ~~~~~~~---~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      .+||++.   +++...++.-.+|  ++.. .. ...+...........|+|+++.++...
T Consensus       192 wSPDG~~~~~~y~S~~~g~~~I~~~~l~~-g~-~~~lt~~~g~~~~p~wSPDG~~Laf~s  249 (428)
T PRK01029        192 WMHIGSGFPYLYVSYKLGVPKIFLGSLEN-PA-GKKILALQGNQLMPTFSPRKKLLAFIS  249 (428)
T ss_pred             EccCCCceEEEEEEccCCCceEEEEECCC-CC-ceEeecCCCCccceEECCCCCEEEEEE
Confidence            5788753   3355555544444  4443 21 222222333344678999997666443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=93.43  E-value=0.31  Score=21.20  Aligned_cols=55  Identities=16%  Similarity=0.160  Sum_probs=35.3

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +.|+.|+.|..|++|+-..   .+..+... ..+..+.-... ..++.+..+|++-+|+.
T Consensus        16 ~eLlvGs~D~~IRvf~~~e---~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGDE---IVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             ceEEEecCCcEEEEEeCCc---EEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            6799999999999987643   34444433 33444444333 45666667777777653

>KOG1912|consensus

Probab=93.31  E-value=0.58  Score=27.25  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC---CC-CEEEEEeCCCCEEEEeC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS---KD-NLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~i~~~~~   66 (68)
                      -.|+++...|.|-+||... ...+..+..+..++..++|-+   +. ..++.-....++.+|+-
T Consensus        80 lliAsaD~~GrIil~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt  142 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT  142 (1062)
T ss_pred             eeEEeccccCcEEEEEehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc
Confidence            3578888889999999876 445555666777777777765   34 34455556678888853

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=93.05  E-value=0.65  Score=23.83  Aligned_cols=66  Identities=12%  Similarity=0.155  Sum_probs=42.6

Q ss_pred             eeecCcEEEEeeC----CCCEEEeecCCC-Cc--ceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSD----DTTIALWDARNL-KT--RVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~----~~~v~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~   67 (68)
                      ++++++.+++...    ++.+..|.+... ..  .+..........+.+++.++++.+..+. .++.+.++++.
T Consensus        44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            4567888888877    457888877652 11  2223332344557888999887776665 57888888754

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.81  E-value=1  Score=25.51  Aligned_cols=55  Identities=11%  Similarity=0.361  Sum_probs=36.3

Q ss_pred             EEeeCCCCEEEeecCCCCcceEE-eccCCCCEEEEEEc--CCCCEEEEEeCCCCEEEEe
Q psy11876         10 ATCSDDTTIALWDARNLKTRVRT-LQGHSNWVKNIEFS--SKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus        10 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++-+....+.+||.+. ...... .......|..+.|.  |+++.+.+.+..+.+.++.
T Consensus        45 ~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   45 VVDSSRSELTIWDTRS-GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEECCCCEEEEEEcCC-cEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3333345677899875 222111 12346678888885  5788999999999988874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.75  E-value=0.74  Score=23.72  Aligned_cols=58  Identities=10%  Similarity=0.108  Sum_probs=34.5

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEE
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      .+..++.++.++.+.+++..+ .........+...+...-.. -+..+..++.+|.+..+
T Consensus       319 ~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~~sp~~-~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIASPPVV-VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccccCCEE-ECCEEEEEeCCceEEEe
Confidence            456788888899999998876 44444444333222211111 22356677788887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.69  E-value=0.87  Score=24.40  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=27.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSN   38 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   38 (68)
                      ++|++++.++.+.-|.|.++|... ...+...++.++
T Consensus       315 ~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRd  350 (415)
T PF14655_consen  315 LSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRD  350 (415)
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCcc
Confidence            578888888888889999999976 555555666554

>PRK02888 nitrous-oxide reductase; Validated

Probab=92.68  E-value=1.1  Score=25.44  Aligned_cols=65  Identities=23%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             eeecCcEE-EEeeCCCCEEEeecCCCCc-----------ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVF-ATCSDDTTIALWDARNLKT-----------RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++||+..+ +++..+..+.+.+..+...           ....... .......+|.+++..+.+...|+++-.|++.
T Consensus       328 vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        328 TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            57888765 5566678999999865221           1112222 2233466788888888899999999999864

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.58  E-value=1.1  Score=25.13  Aligned_cols=51  Identities=20%  Similarity=0.332  Sum_probs=32.9

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      .+.+++.++..|-+++|+--- ......+.+....+..+....++.++++-+
T Consensus       572 esGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             cCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee
Confidence            356899999999999998532 222223444555667777777776555444

>KOG0882|consensus

Probab=92.23  E-value=0.04  Score=29.43  Aligned_cols=62  Identities=16%  Similarity=0.248  Sum_probs=44.5

Q ss_pred             CcEEEEeeCCCCEEEeecCC-CCc-ceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARN-LKT-RVRTLQGHSNWVKNIEFSSKDNLLVTAGF-DGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   67 (68)
                      ..++.+++.|+.++.|-... ... .+..+.+|-..+.+++.+.++.+..+.+. |..++++|+.
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            46889999999999997643 121 22234566666777777888888877666 8888888764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.20  E-value=0.62  Score=22.56  Aligned_cols=23  Identities=22%  Similarity=0.618  Sum_probs=18.9

Q ss_pred             cCCCCEEEEEeCCCCEEEEeCCC
Q psy11876         46 SSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        46 ~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ...+.++++.+.+|.+.+||+.+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~   41 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKK   41 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCC
Confidence            34677889999999999999863

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.00  E-value=1.1  Score=24.03  Aligned_cols=63  Identities=13%  Similarity=0.061  Sum_probs=32.8

Q ss_pred             eeecCcEE-EEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCCEEEE
Q psy11876          2 IFLDTRVF-ATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~   64 (68)
                      ++||++.+ .+...|+...+|-+.........+......-..=.|+|+++.++ ..+..|.-.+|
T Consensus       245 fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~  309 (425)
T COG0823         245 FSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIY  309 (425)
T ss_pred             CCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceE
Confidence            67887654 56666676666655431222222222222112446889886655 44555655555

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.69  E-value=0.89  Score=22.30  Aligned_cols=60  Identities=18%  Similarity=0.336  Sum_probs=37.5

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..++.++.|..+| +.+++...........  ....|..+...++-+.++..+ |+.+.++++.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~   64 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLD   64 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEch
Confidence            4567889998888 7888873212222222  222377777777666555554 4888888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=91.51  E-value=1.4  Score=24.34  Aligned_cols=60  Identities=13%  Similarity=0.226  Sum_probs=41.7

Q ss_pred             CcEEEEeeCCC-CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDT-TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.-++.|..|+ .+-+++...  .....+...-..+..+..++++..++.+.....+.+.|+.
T Consensus       371 ~e~~vigt~dgD~l~iyd~~~--~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         371 PEGDVIGTNDGDKLGIYDKDG--GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CcceEEeccCCceEEEEecCC--ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            33567777777 777787765  2233444455567888999999888888777777777664

>KOG2041|consensus

Probab=91.43  E-value=1.4  Score=25.71  Aligned_cols=53  Identities=15%  Similarity=0.198  Sum_probs=37.6

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD   58 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (68)
                      |+...++.+..+|.+.+-+..+...|...-.  ...+....|++++..++.++.+
T Consensus       227 pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  227 PDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             CCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCc
Confidence            5777899999999888766555344443333  3567788999999888877654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.28  E-value=1.3  Score=23.25  Aligned_cols=66  Identities=15%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             eeecCcEEEEeeCC-CCEEEeecCCCCcc--eEEeccCCCC----------EEEEEEcCCCCEEEEEeCC-CCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD-TTIALWDARNLKTR--VRTLQGHSNW----------VKNIEFSSKDNLLVTAGFD-GSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~i~~~~~~   67 (68)
                      +++++++++++... +.+.++.++..+..  ......|...          ++...+.|+++.+.+.+.. -.+.+|++.
T Consensus        96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~  175 (346)
T COG2706          96 VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD  175 (346)
T ss_pred             ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc
Confidence            34567777666655 67788877653221  1112223333          6777889999888877764 567777653

>KOG1920|consensus

Probab=90.95  E-value=2.5  Score=26.00  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      +.+.++.+...|.+.+-+..+.  ..........+|.+.+|+|++..++-.+..+++.+..
T Consensus        79 d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   79 DTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             ccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            5566777777888887766542  1222333467889999999999888888777776654

>KOG1916|consensus

Probab=90.87  E-value=0.67  Score=27.55  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARN   25 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~   25 (68)
                      ++|||..++.+..||.+++|.+..
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeee
Confidence            589999999999999999998753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=90.35  E-value=1.5  Score=22.93  Aligned_cols=63  Identities=19%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcc----eEEeccCC------------CCEEEEEEcCC--CCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTR----VRTLQGHS------------NWVKNIEFSSK--DNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~   66 (68)
                      .|.++++|...|.+.++.-....-+    ...+++|.            ..+..+.|...  ...+...+.|.++.+|.+
T Consensus        37 tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKi  116 (460)
T COG5170          37 TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKI  116 (460)
T ss_pred             ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeee
Confidence            4678899988898888865442211    11233332            34667777653  356777788999999976


Q ss_pred             C
Q psy11876         67 N   67 (68)
Q Consensus        67 ~   67 (68)
                      .
T Consensus       117 y  117 (460)
T COG5170         117 Y  117 (460)
T ss_pred             e
Confidence            4

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.01  E-value=1.3  Score=21.40  Aligned_cols=66  Identities=20%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             eeecCcEEE-EeeCCCCEEEeecCCCCc-c--eEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFA-TCSDDTTIALWDARNLKT-R--VRTL---QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.++ +-+..+.|..+++..... .  ...+   .......-.+++..+++++++....+.|.+++..
T Consensus       141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            577887665 555556677777643222 1  1111   1122235678888888888888778888887753

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.55  E-value=2.7  Score=24.34  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=25.4

Q ss_pred             CCCEEEEEEcCC---CCEEEEEeCCCCEEEEeCC
Q psy11876         37 SNWVKNIEFSSK---DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        37 ~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~   67 (68)
                      ...+..+.|+|.   +..++....|+.+++||+.
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence            346778899995   4788888999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.80  E-value=2  Score=23.59  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=18.8

Q ss_pred             cCcEEEEeeCCCCEEEeecCC
Q psy11876          5 DTRVFATCSDDTTIALWDARN   25 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~   25 (68)
                      +..++++.+.|+.+++|++.+
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t  249 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLET  249 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEEeCCCeEEEEECCC
Confidence            567889999999999999987

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1645|consensus

Probab=88.28  E-value=0.88  Score=24.40  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=28.2

Q ss_pred             EeccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeCCC
Q psy11876         32 TLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~   68 (68)
                      ....+...|..++++|..+ ++..++.+.+|.+.|+++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet  225 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET  225 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEeccc
Confidence            3445566778889999765 678888999999998763

>KOG2315|consensus

Probab=88.21  E-value=3.1  Score=23.32  Aligned_cols=31  Identities=26%  Similarity=0.573  Sum_probs=23.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC---CCEEEEeCC
Q psy11876         37 SNWVKNIEFSSKDNLLVTAGFD---GSIYTWDIN   67 (68)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~   67 (68)
                      +.+-+.+-|+|.+++++.++++   |.+-+||+.
T Consensus       311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            3344678899999888877764   889999975

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.19  E-value=2.8  Score=22.67  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=27.8

Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         32 TLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+.+....+..+..+|.+++.+..+.-|.|.++|..
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~  337 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA  337 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            344455667889999998888777666999999875

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=87.30  E-value=3.1  Score=22.25  Aligned_cols=31  Identities=16%  Similarity=0.151  Sum_probs=21.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         36 HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ...+|.+++.+.-+ .++.+..+|.+.+.|+|
T Consensus        85 ~~g~vtal~~S~iG-Fvaigy~~G~l~viD~R  115 (395)
T PF08596_consen   85 KQGPVTALKNSDIG-FVAIGYESGSLVVIDLR  115 (395)
T ss_dssp             -S-SEEEEEE-BTS-EEEEEETTSEEEEEETT
T ss_pred             cCCcEeEEecCCCc-EEEEEecCCcEEEEECC
Confidence            35667777765444 67788889999999986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=87.04  E-value=3.2  Score=22.25  Aligned_cols=57  Identities=19%  Similarity=0.177  Sum_probs=28.2

Q ss_pred             eeecCcEEE-EeeCCCC--EEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCC
Q psy11876          2 IFLDTRVFA-TCSDDTT--IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA-GFDGS   60 (68)
Q Consensus         2 ~~~~~~~~~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   60 (68)
                      ++||++.++ +.+.++.  +.+++... . ....+.........-.|+|+++.++-. ...+.
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~-g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~  300 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNT-K-TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGY  300 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCC-C-cEEEcccCCCccCccEECCCCCEEEEEECCCCC
Confidence            567886554 4444444  44445443 2 223333333222345799998755544 33443

>KOG4190|consensus

Probab=86.74  E-value=1.4  Score=24.87  Aligned_cols=59  Identities=29%  Similarity=0.409  Sum_probs=39.2

Q ss_pred             EEEeeCCCCEEEeecCCCCcceE--Ee--ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          9 FATCSDDTTIALWDARNLKTRVR--TL--QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++.++....++++|.+...+...  .+  .+-...+.+++..+.+++++.+-..|.+.+.|.+
T Consensus       844 iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR  906 (1034)
T KOG4190|consen  844 IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR  906 (1034)
T ss_pred             eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC
Confidence            34447778899998876433211  11  2233456788899999888888778888777755

>KOG2314|consensus

Probab=86.71  E-value=4.2  Score=23.14  Aligned_cols=55  Identities=13%  Similarity=0.153  Sum_probs=33.2

Q ss_pred             eeecCcEEEEe---eCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy11876          2 IFLDTRVFATC---SDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF   57 (68)
Q Consensus         2 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   57 (68)
                      .+|.|++++.+   ++.+.+.++|.............|. ....+.|.|.|+++.+++.
T Consensus       500 wsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  500 WSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             EcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeee
Confidence            46778776554   4457788888753111111112232 3467789999999988875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=86.47  E-value=3.5  Score=22.06  Aligned_cols=28  Identities=18%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876         38 NWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ..+..+.|..+. .++....+|.++++|+
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDL  108 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeC
Confidence            667788887754 4556678999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1832|consensus

Probab=85.88  E-value=3.6  Score=24.98  Aligned_cols=38  Identities=21%  Similarity=0.382  Sum_probs=31.2

Q ss_pred             eEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         30 VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ...+..+.....+++|+.+.++++.|+..|.++++++.
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~ 1131 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS 1131 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEcc
Confidence            33455667777889999988999999999999999764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=85.00  E-value=6.4  Score=23.71  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=36.0

Q ss_pred             ecCcEEEEeeCC---CCEEEeecCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDD---TTIALWDARNLKTRVRTL--QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      |.|+.|++.-..   ..|-+|+-+-.+.-....  ......+..+.|+.++..++....+. +.+|-.
T Consensus       266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence            677877776651   233344332111111111  13445788999999998888766444 889854

>KOG2314|consensus

Probab=84.51  E-value=5.6  Score=22.68  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             eeecCcEEEEeeCC-----------CCEEEeecCCCCcceEEecc--CCCCE-EEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDD-----------TTIALWDARNLKTRVRTLQG--HSNWV-KNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      +||+.++|++=+..           ..+.+||+.+ +.....+..  ....+ ..+.|+.+..+++.... ..|.+++
T Consensus       257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyE  332 (698)
T KOG2314|consen  257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYE  332 (698)
T ss_pred             cCCccceEEEecCCccccCcccCCCceEEEEEccc-cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEe
Confidence            45666666554322           4678999987 433333333  22223 46789999888876654 3444554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=84.00  E-value=4.4  Score=21.04  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=31.4

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCE-EEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWV-KNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+..++.++.++.+..++..+ .............. .....  .+..+..++.++.+.++|..
T Consensus       278 ~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       278 DDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             eCCEEEEECCCCeEEEEECCC-CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence            345566667777777777765 33222221111111 11111  34466677778888888754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4649|consensus

Probab=83.55  E-value=4.5  Score=20.86  Aligned_cols=29  Identities=17%  Similarity=0.075  Sum_probs=22.2

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEE
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRT   32 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   32 (68)
                      .+++..++.++.|+..+..|.+. ...+..
T Consensus       102 d~~~glIycgshd~~~yalD~~~-~~cVyk  130 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKT-YGCVYK  130 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccc-cceEEe
Confidence            45788999999999999988876 334443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=83.12  E-value=7.5  Score=23.09  Aligned_cols=57  Identities=14%  Similarity=0.104  Sum_probs=35.1

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEecc----CCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTLQG----HSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ....|-.++.+..||.+.....+..-..    ......+++...+| .++.|+.+|.|++||
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd  604 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD  604 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec
Confidence            3456666778888888763322221111    12234455555555 688899999999997

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1275|consensus

Probab=83.00  E-value=8.3  Score=23.49  Aligned_cols=59  Identities=17%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             cEEEEeeCCCCEEEeecCCCCc---ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          7 RVFATCSDDTTIALWDARNLKT---RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ..++.++..|...+.+......   ...........+..+.+++.+..++.+..++.+.+|.
T Consensus       279 t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  279 TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            3466677778888777332122   2333334455678899999999999999999999995

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=82.73  E-value=5.9  Score=21.55  Aligned_cols=59  Identities=8%  Similarity=0.137  Sum_probs=36.8

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ..+++.-+.||.+.+++-+..  .........--..-+.+.+....+++++.+..+.-|.+
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            357899999999999988652  11222222222235566776667777776666665543

>KOG1916|consensus

Probab=82.15  E-value=1.1  Score=26.79  Aligned_cols=60  Identities=18%  Similarity=0.166  Sum_probs=36.2

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEE-----------EEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVK-----------NIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +...++.+..++.+++..+.....  ..+.+|..++.           .-.++|+|..++..+.||.+..|.+
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            345567777778888766643111  12223332221           2236888888888888988888764

>KOG3630|consensus

Probab=82.01  E-value=2.8  Score=25.83  Aligned_cols=29  Identities=14%  Similarity=0.255  Sum_probs=24.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876         37 SNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      .....+++|+|.+..++.+...|++..|.
T Consensus       198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             ccceeeEEeccccceeeEecCCCeEEEee
Confidence            34567999999999999998888887764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=80.62  E-value=8.8  Score=22.16  Aligned_cols=30  Identities=23%  Similarity=0.447  Sum_probs=21.2

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCCCEEEEe
Q psy11876         36 HSNWVKNIEFSSKDN-LLVTAGFDGSIYTWD   65 (68)
Q Consensus        36 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~   65 (68)
                      ..+.|++.+|.++++ ++++.+..-.-.+||
T Consensus       154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             CCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            456789999999874 555555555666776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	68
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-08
2h9l_A	329	Wdr5delta23 Length = 329		4e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		4e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		5e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		6e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		6e-04

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65  DI 66
           D+
Sbjct: 138 DV 139

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65  DI 66
           D+
Sbjct: 138 DV 139

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 65  DI 66
           D+
Sbjct: 159 DV 160

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 98  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 65  DI 66
           D+
Sbjct: 157 DV 158

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 93  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 65  DI 66
           D+
Sbjct: 152 DV 153

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 65  DI 66
           D+
Sbjct: 141 DV 142

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65  DI 66
           D+
Sbjct: 138 DV 139

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 65  DI 66
           D+
Sbjct: 141 DV 142

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 77  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 65  DI 66
           D+
Sbjct: 136 DV 137

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65  DI 66
           D+
Sbjct: 138 DV 139

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 72  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 65  DI 66
           D+
Sbjct: 131 DV 132

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 81  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 65  DI 66
           D+
Sbjct: 140 DV 141

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 82  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 65  DI 66
           D+
Sbjct: 141 DV 142

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 65  DI 66
           D+
Sbjct: 135 DV 136

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 75  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 65  DI 66
           D+
Sbjct: 134 DV 135

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65  DI 66
           D+
Sbjct: 138 DV 139

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D+ +  + SDD T+ +WD  + K  ++TL+GHSN+V    F+ + NL+V+  FD S+  W
Sbjct: 76  DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 65  DI 66
           D+
Sbjct: 135 DV 136

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D++V  +C  D  IA+WD  N +T VR  QGH++    I+ S+    L T G D ++ +W
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 65  DINK 68
           D+ +
Sbjct: 211 DLRE 214

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
           + AT S D T+ALWD RNLK ++ + + H + +  +++S   + +L ++G D  ++ WD+
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 67  NK 68
           +K
Sbjct: 356 SK 357

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
           + AT S D T+ALWD RNLK ++ + + H + +  +++S   + +L ++G D  ++ WD+
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 67  NK 68
           +K
Sbjct: 354 SK 355

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
           + AT S D T+ALWD RNLK ++ + + H + +  +++S   + +L ++G D  ++ WD+
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 67  NK 68
           +K
Sbjct: 352 SK 353

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
           + AT S D T+ALWD RNLK ++ T + H + +  + +S   + +L ++G D  +  WD+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 67  NK 68
           +K
Sbjct: 350 SK 351

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
           + AT S D T+ALWD RNLK ++ T + H + +  + +S   + +L ++G D  +  WD+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 67  NK 68
           +K
Sbjct: 350 SK 351

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 8   VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
           + AT S D T+ALWD RNLK ++ + + H + +  +++S   + +L ++G D  +  WD+
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 67  NK 68
           +K
Sbjct: 348 SK 349

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIY 62
           D    ATCS D  + +WD+   K  V T   HS  V    F++K N  LL T   D  + 
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 63  TWDINK 68
            WD+N+
Sbjct: 734 LWDLNQ 739

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIY 62
           D    ATCS D  + +WD+   K  V T   HS  V    F++K N  LL T   D  + 
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 63  TWDINK 68
            WD+N+
Sbjct: 727 LWDLNQ 732

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 7   RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
           ++ A+CS D TI LWD +  +  +RT+ GH + V ++      + +V+A  D +I  W++
Sbjct: 163 KLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 11  TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
           + S DTTI +WD  N +    TLQGH+  V  +  S  D  LV+A  DGSI  WD N
Sbjct: 327 SASXDTTIRIWDLENGELXY-TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN 380

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 11  TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
           + S DTTI +WD  N +  + TLQGH+  V  +  S  D  LV+A  DGSI  WD N
Sbjct: 327 SASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN 380

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 7   RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
           R+  + S D TI LWD       +R L+GH   V+ I F +K   +V+  +DG I  WD+
Sbjct: 307 RLVVSGSSDNTIRLWDI-ECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDL 363

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           D +  A+ SDD T+ LW+ RN +  ++TL GHS+ V+ + FS     + +A  D ++  W
Sbjct: 68  DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 65  DIN 67
           + N
Sbjct: 126 NRN 128

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 9   FATCSDDTTIALWDARNLKTR-VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
            A+ S D T  +W         V TL+GH N VK++ ++   NLL T   D S++ W+++
Sbjct: 76  LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 68  K 68
           +
Sbjct: 136 E 136

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 11  TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
           + S D T+ +W+  N K R  TL GH+ +V  +  S   +L  + G DG +  WD+
Sbjct: 536 SASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 5   DTRVFATCSDDTTIALW---DARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGS 60
           + ++ A   D+ ++ L+   +A N    +     HS+ VK ++F++K DN+L + G +G 
Sbjct: 78  NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE 137
Query: 61  IYTWDINK 68
           I+ WD+NK
Sbjct: 138 IFIWDMNK 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.81
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.7
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.7
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.7
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.69
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.68
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.68
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.68
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.67
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.67
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.67
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.67
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.67
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.66
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.66
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.65
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.64
2pm7_B	297	Protein transport protein SEC13, protein transport	99.64
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.64
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.64
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.63
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.63
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.63
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.63
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.63
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.63
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.63
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.63
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.62
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.62
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.62
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.62
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.61
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.61
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.6
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.6
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.6
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.59
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.59
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.58
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.57
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.57
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.57
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.57
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.57
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.57
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.56
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.56
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.56
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.56
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.56
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.55
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.55
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.55
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.55
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.55
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.55
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.54
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.54
2pm7_B	297	Protein transport protein SEC13, protein transport	99.54
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.54
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.53
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.53
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.52
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.52
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.52
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.52
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.52
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.52
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.51
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.51
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.51
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.5
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.5
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.5
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.5
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.49
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.49
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.49
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.49
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.49
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.48
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.48
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.48
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.48
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.48
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.47
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.47
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.47
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.47
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.46
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.46
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.46
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.46
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.45
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.45
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.44
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.44
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.44
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.44
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.44
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.44
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.44
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.44
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.44
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.43
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.43
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.43
3jro_A	753	Fusion protein of protein transport protein SEC13	99.43
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.41
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.41
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.4
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.4
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.4
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.4
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.4
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.39
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.38
3jro_A	753	Fusion protein of protein transport protein SEC13	99.36
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.34
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.34
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.29
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.28
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.27
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.12
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.02
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.68
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.66
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.66
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.66
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.65
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.65
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.63
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.6
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.58
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.57
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.57
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.51
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.5
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.5
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.48
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.48
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.46
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.43
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.43
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.41
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.39
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.36
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.3
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.3
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.27
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.26
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.21
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.2
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.2
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.14
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.11
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.09
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.07
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.06
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.03
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.02
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.02
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.0
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.93
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.92
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.91
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.9
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.9
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.87
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.86
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.84
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.47
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.44
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.37
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.33
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.19
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.11
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.07
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.98
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.94
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.94
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.64
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.39
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.29
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.15
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.02
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.9
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.69
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.54
2qe8_A	343	Uncharacterized protein; structural genomics, join	94.97
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	94.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.81
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	94.79
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.4
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.09
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.07
2qe8_A	343	Uncharacterized protein; structural genomics, join	93.76
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.77
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.53
2ece_A	462	462AA long hypothetical selenium-binding protein;	91.75
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	91.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	91.64
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	91.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	91.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	91.4
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	89.02
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	88.01
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	85.51
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	85.34
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	84.57
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	84.48
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	84.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	84.24
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	81.79

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.81  E-value=8.9e-19  Score=84.55  Aligned_cols=65  Identities=15%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++++|++|+.|+.|++|+..+ ..++..+ .+|...|.+++|+|+++++++++.|++|++|++.
T Consensus       277 ~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          277 VDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             ECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            678999999999999999999987 5566554 6899999999999999999999999999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.70  E-value=5.6e-16  Score=73.24  Aligned_cols=65  Identities=14%  Similarity=0.331  Sum_probs=59.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.+++|+.|+.+++|+..+ ......+.+|...+.+++++|++..+++++.|+++++||++
T Consensus        63 ~~~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~  127 (304)
T 2ynn_A           63 FIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE  127 (304)
T ss_dssp             EEGGGTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG
T ss_pred             EeCCCCEEEEECCCCEEEEEECCC-CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC
Confidence            567899999999999999999987 56677888999999999999999999999999999999964

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.70  E-value=1.3e-15  Score=72.62  Aligned_cols=65  Identities=32%  Similarity=0.636  Sum_probs=59.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+... ......+.+|...+..++|+|++..+++++.|+.+++||++
T Consensus       214 ~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          214 FSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             ECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            578899999999999999999987 56677788899999999999999999999999999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.70  E-value=1.1e-15  Score=73.62  Aligned_cols=65  Identities=22%  Similarity=0.354  Sum_probs=58.4

Q ss_pred             eeecCcEEEEeeCCCC-EEEeecCCCCcceEEec-c-CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTT-IALWDARNLKTRVRTLQ-G-HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+. +++|+..+ ......+. + |...+.+++|+|++..+++++.|+++++||++
T Consensus       203 ~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          203 LNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             ECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            5789999999999998 99999987 56666666 4 88999999999999999999999999999975

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.69  E-value=1.4e-15  Score=72.48  Aligned_cols=65  Identities=25%  Similarity=0.454  Sum_probs=59.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.|+.+++|++.. ..+...+..|...+..++|+|++..+++++.|+.+++||+.
T Consensus       256 ~sp~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          256 FCPDDTHFVSSSSDKSVKVWDVGT-RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            578899999999999999999987 66777888899999999999999999999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.68  E-value=2.2e-15  Score=72.52  Aligned_cols=65  Identities=18%  Similarity=0.379  Sum_probs=59.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|++.+ ......+.+|...|.+++|++++ ..+++++.|+++++||++
T Consensus       135 ~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~  200 (344)
T 4gqb_B          135 VLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR  200 (344)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc
Confidence            578999999999999999999987 67788889999999999999976 678999999999999976

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.68  E-value=2.6e-15  Score=71.86  Aligned_cols=65  Identities=28%  Similarity=0.446  Sum_probs=59.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|+... ......+.+|...+.+++|+|++..+++++.|+.+++||++
T Consensus       192 ~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          192 LAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            567889999999999999999987 56677888899999999999999999999999999999976

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.68  E-value=2.2e-15  Score=71.62  Aligned_cols=65  Identities=23%  Similarity=0.437  Sum_probs=59.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.+++++.|+.+++|++.+ ......+.+|...+.+++++|++..+++++.|+++++||++
T Consensus        73 ~s~dg~~l~s~s~D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           73 LTADGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            567899999999999999999987 56677888999999999999999999999999999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.67  E-value=3.1e-15  Score=71.59  Aligned_cols=65  Identities=28%  Similarity=0.477  Sum_probs=59.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.|+.+++|++.+ ......+.+|...+.+++|+|+++.+++++.|+.+++||+.
T Consensus        84 ~~~~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           84 LSQENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             ECSSTTEEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            567889999999999999999987 56677788999999999999999999999999999999974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.67  E-value=2.6e-15  Score=70.61  Aligned_cols=65  Identities=15%  Similarity=0.307  Sum_probs=55.5

Q ss_pred             eeecCcEEEE--eeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFAT--CSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++..+++  ++.|+.+++|+..+ ..++..+.+|...|.+++|+|+++.+++++.|++|++||+.
T Consensus       248 ~~~~~~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          248 WSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ecccccceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            3455655554  44789999999987 67788899999999999999999999999999999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.67  E-value=3e-15  Score=72.77  Aligned_cols=66  Identities=27%  Similarity=0.517  Sum_probs=59.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|+++.+++|+.|+.+++|++.. ......+.+|...+.+++|+|++..+++++.|+.+++||+++
T Consensus       131 ~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          131 FSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence            567899999999999999999987 566777889999999999999999999999999999999763

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.67  E-value=2.1e-15  Score=73.71  Aligned_cols=65  Identities=32%  Similarity=0.551  Sum_probs=59.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++|+.|+.+++|+..+ ......+.+|...|.+++|+|++..+++++.|+++++||+.
T Consensus       116 ~~p~~~~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          116 FHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             ECSSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            567889999999999999999987 56677888999999999999999999999999999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.67  E-value=1.5e-15  Score=76.07  Aligned_cols=65  Identities=31%  Similarity=0.513  Sum_probs=58.6

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++|+++.+++++.|+.+++|+..  ......+.+|...|.+++|+|+++.+++++.|+.+++||..
T Consensus        23 a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~   87 (577)
T 2ymu_A           23 AFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN   87 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            368999999999999999999963  46677888999999999999999999999999999999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.66  E-value=4.8e-15  Score=70.07  Aligned_cols=62  Identities=32%  Similarity=0.550  Sum_probs=57.2

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++..+++++.|+.+++|+++. ......+.+|...+..++|+|++..+++++.|+++++||.+
T Consensus       197 ~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          197 DKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             TCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            667999999999999999987 66777888999999999999999999999999999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.66  E-value=4e-15  Score=72.10  Aligned_cols=63  Identities=30%  Similarity=0.494  Sum_probs=57.3

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.+++|+.|+.+++|+++........+.+|...|.+++|+|++..+++++.|+++++||++
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence            678999999999999999975456677888999999999999999999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.65  E-value=3.5e-15  Score=71.40  Aligned_cols=63  Identities=24%  Similarity=0.428  Sum_probs=57.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++|+++.+++|+.|+.+++|+... ......+.+|...|.+++|+|++..+++++.|+.+++||
T Consensus       278 ~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          278 FSKSGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCCEEEEECCCCeEEEEEccc-CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            578899999999999999999977 556777889999999999999999999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.64  E-value=1.9e-15  Score=73.90  Aligned_cols=65  Identities=26%  Similarity=0.637  Sum_probs=57.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.|+.+++|+... ......+.+|...|.+++|+|++..+++++.|+.+++|+++
T Consensus       346 ~~~~g~~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          346 FHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            567889999999999999999977 56677888999999999999999999999999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.64  E-value=7.1e-15  Score=69.30  Aligned_cols=66  Identities=24%  Similarity=0.498  Sum_probs=57.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC-CcceEEeccCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL-KTRVRTLQGHSNWVKNIEFSS--KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|+.... ......+.+|...|.+++|++  .+..+++++.|+++++||++
T Consensus        17 ~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B           17 MDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE   85 (297)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred             ECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence            5789999999999999999998642 345677889999999999986  37899999999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.64  E-value=6.4e-15  Score=72.01  Aligned_cols=65  Identities=15%  Similarity=0.321  Sum_probs=56.2

Q ss_pred             eeecCcEEEEee--CCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCS--DDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.+++++  .|+.+++|+..+ ..++..+.+|...|.+++|+|++..+++++.|++|++||+.
T Consensus       328 ~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          328 WSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            456676666544  789999999987 67788899999999999999999999999999999999874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.64  E-value=5.8e-15  Score=71.19  Aligned_cols=64  Identities=20%  Similarity=0.318  Sum_probs=54.3

Q ss_pred             eeecC-cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDT-RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++ ++|++++.|+.+++|+... ... ....+|...|.+++|+| ++..+++++.|++|++|++.
T Consensus       277 ~sp~~~~~lasgs~D~~i~iwd~~~-~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          277 YSYHSSPFLASISEDCTVAVLDADF-SEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTS-CEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EcCCCCCEEEEEeCCCEEEEEECCC-CcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            46766 6789999999999999976 333 34557999999999998 68899999999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.63  E-value=1.2e-14  Score=69.75  Aligned_cols=66  Identities=30%  Similarity=0.501  Sum_probs=57.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.|++++.|+.+++|+..... .....+.+|...|.+++|+|+++.+++++.|+.+++||++
T Consensus        69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             ECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            57899999999999999999987532 3456778899999999999999999999999999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.63  E-value=1.9e-14  Score=69.33  Aligned_cols=62  Identities=16%  Similarity=0.359  Sum_probs=56.8

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.+++|+.|+.+++|+++. ..+...+..|...+.+++|+|++..+++++.|+++++||++
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            568999999999999999987 56777888899999999999999999999999999999976

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.63  E-value=1.8e-14  Score=68.01  Aligned_cols=65  Identities=29%  Similarity=0.504  Sum_probs=58.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+... ......+.+|...+..++|+|+++.+++++.|+.+++||++
T Consensus        31 ~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           31 FSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ECCCCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            578899999999999999999977 55666778899999999999999999999999999999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.63  E-value=8.4e-15  Score=70.54  Aligned_cols=63  Identities=27%  Similarity=0.513  Sum_probs=57.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++|++..+++++.|+.+++|+... ......+.+|...|.+++|+|++..+++++.|+.+++|+
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVLK-GSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EeCCCCEEEEEECCCcEEEEECCC-CceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            567899999999999999999977 556777889999999999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.63  E-value=9e-15  Score=70.44  Aligned_cols=64  Identities=23%  Similarity=0.306  Sum_probs=55.2

Q ss_pred             ee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          3 FL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      +| +++++++|+.|+.|++|+++. ..++..+.+|...|.+++|+|++ +++++++.|+++++||.+
T Consensus       223 ~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          223 HPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             CSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             cCCCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            45 457899999999999999987 66778888999999999999986 678999999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.63  E-value=2.3e-14  Score=67.68  Aligned_cols=65  Identities=35%  Similarity=0.709  Sum_probs=59.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|++.. ......+.+|...+.++.|+|++..+++++.|+.+++||++
T Consensus        73 ~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  137 (312)
T 4ery_A           73 WSSDSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK  137 (312)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EcCCCCEEEEECCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            567899999999999999999987 56677788899999999999999999999999999999976

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.7e-14  Score=69.06  Aligned_cols=66  Identities=15%  Similarity=0.302  Sum_probs=56.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQG-HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|++..+++|+.|+.+++|+++........+.. |...+.+++|+|++..+++++ ++.+++||+++
T Consensus       178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~  244 (343)
T 3lrv_A          178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK  244 (343)
T ss_dssp             ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence            5788999999999999999999873333256776 899999999999999999998 55999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.63  E-value=1.2e-14  Score=70.47  Aligned_cols=65  Identities=18%  Similarity=0.354  Sum_probs=56.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEe----ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTL----QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|+... .......    .+|...|.+++|+|++..+++++.|+.+++|++.
T Consensus       306 ~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          306 FSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            578899999999999999999876 3344444    5688899999999999999999999999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.62  E-value=1.5e-14  Score=73.54  Aligned_cols=65  Identities=25%  Similarity=0.425  Sum_probs=57.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec-------cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ-------GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+... ......+.       +|...|..++|+|+++.+++++.|+++++||++
T Consensus       198 fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          198 YNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            678999999999999999999876 44444442       688999999999999999999999999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.62  E-value=2.1e-14  Score=69.73  Aligned_cols=65  Identities=25%  Similarity=0.547  Sum_probs=59.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|++.. ......+.+|...+.+++|+|++..+++++.|+.+++||++
T Consensus       147 ~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          147 FFPSGEALISSSQDMQLKIWSVKD-GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCCC-CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence            567889999999999999999987 55667788899999999999999999999999999999976

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2.1e-14  Score=68.43  Aligned_cols=65  Identities=28%  Similarity=0.483  Sum_probs=59.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+... ......+..|...+.+++|+|++..+++++.|+.+.+||+.
T Consensus        40 ~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           40 YNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             ECTTSCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             EcCCCCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            578899999999999999999987 56677888899999999999999999999999999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2e-14  Score=68.63  Aligned_cols=65  Identities=26%  Similarity=0.492  Sum_probs=56.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC---cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK---TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++|+++.|++++.|+.+++|+.....   .....+.+|...+.+++|+|++..+++++.|+++++|+.
T Consensus       115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~  182 (330)
T 2hes_X          115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD  182 (330)
T ss_dssp             ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            57889999999999999999995311   345567789999999999999999999999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3.2e-14  Score=67.94  Aligned_cols=66  Identities=26%  Similarity=0.462  Sum_probs=52.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC------CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL------KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+....      ......+.+|...|.+++|+|+++.+++++.|+.+++||++
T Consensus        66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            5788999999999999999998531      23455677899999999999999999999999999999973

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.61  E-value=9.7e-15  Score=70.82  Aligned_cols=60  Identities=23%  Similarity=0.294  Sum_probs=50.7

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEE-EEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVK-NIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..+++++.|+.|++||+.+ +.....+.+|...+. .++|+|+++.+++++.|++|++||+.
T Consensus       296 ~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          296 HCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             TEEEEEETTSCEEEEETTT-CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             CEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            3689999999999999988 677778888877654 58999999999999999999999963

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.60  E-value=9.2e-15  Score=73.25  Aligned_cols=62  Identities=31%  Similarity=0.543  Sum_probs=56.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++|+++++++++.|+.+++|+..  ......+.+|...|..++|+|+++.+++++.|+.+++||
T Consensus       516 ~s~dg~~l~s~~~dg~v~lwd~~--~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          516 FSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEECcCEEEEEeCC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            67899999999999999999964  456777889999999999999999999999999999997

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.60  E-value=1.4e-14  Score=68.83  Aligned_cols=66  Identities=24%  Similarity=0.463  Sum_probs=56.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSS--KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.|++|+.|+.+++|++.... .....+.+|...|.+++|++  ++..+++++.|+++++||++
T Consensus        21 ~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           21 MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             ECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             EcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            56889999999999999999997622 23556788999999999975  37899999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.60  E-value=2.6e-14  Score=73.35  Aligned_cols=65  Identities=26%  Similarity=0.390  Sum_probs=59.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|++.. ......+.+|...|.+++|+|++..+++++.|+++++||..
T Consensus       438 ~s~~g~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          438 LSSDGQFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            578899999999999999999987 56677788999999999999999999999999999999863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.59  E-value=1.9e-14  Score=70.68  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=54.3

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++| +++.+++|+.||.|++|++.... .......+|...|.+++|+| ++..+++++.|+++++||++
T Consensus       127 ~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          127 WHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             ECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             EeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            455 56789999999999999987632 23334567999999999998 57899999999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.59  E-value=2.7e-14  Score=68.50  Aligned_cols=66  Identities=24%  Similarity=0.437  Sum_probs=55.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcc--eEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTR--VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.|++|+.|+.+++|+.......  .....+|...|.+++|+|+++.+++++.|+.+++|+..
T Consensus        24 ~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~   91 (345)
T 3fm0_A           24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN   91 (345)
T ss_dssp             ECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence            6789999999999999999998762211  12235788999999999999999999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.58  E-value=5.1e-14  Score=68.39  Aligned_cols=65  Identities=17%  Similarity=0.290  Sum_probs=57.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.+++++.|+.+++|+... ......+..|...+.+++|+|++..+++++.|+.+++||++
T Consensus       105 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A          105 AKLQMRRFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             ECSSSCEEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EecCCCEEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            467889999999999999999976 55555667899999999999999999999999999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.57  E-value=1.3e-13  Score=70.19  Aligned_cols=65  Identities=20%  Similarity=0.343  Sum_probs=57.4

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++. .+++++.|+.+++|+... ......+.+|...|.+++|+|+++.+++++.|+++++||..
T Consensus       155 f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          155 FKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence            567765 699999999999999876 55666788999999999999999999999999999999964

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.57  E-value=1.2e-13  Score=65.68  Aligned_cols=62  Identities=21%  Similarity=0.480  Sum_probs=55.1

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++..+++++.|+.+++|++.. ......+.+|...+..++++|++..+++++.|+.+++||+.
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             CccEEEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            455899999999999999987 55666778899999999999999999999999999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.57  E-value=8.4e-14  Score=67.19  Aligned_cols=65  Identities=23%  Similarity=0.493  Sum_probs=58.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+... ......+.+|...+.+++|++++ ..+++++.|+.+++||++
T Consensus       147 ~spdg~~l~sgs~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~  212 (357)
T 4g56_B          147 VFSDGTQAVSGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR  212 (357)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence            578999999999999999999987 66777888999999999999976 578899999999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.57  E-value=1.5e-13  Score=65.84  Aligned_cols=63  Identities=22%  Similarity=0.564  Sum_probs=55.0

Q ss_pred             cCcEEEEeeCCCCEEEeecCCC------CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNL------KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.+++|+.|+.+++|+....      ..+...+.+|...|.+++|+|++..+++++.|+++++||++
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~  106 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR  106 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            7889999999999999998642      13455678899999999999999999999999999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.57  E-value=2.9e-14  Score=69.45  Aligned_cols=62  Identities=21%  Similarity=0.344  Sum_probs=54.4

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.|++++.|+.+++|++.. ..+......|...+.+++|+|++ ..+++++.|+++++||++
T Consensus       155 d~~~las~s~D~tv~~Wd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~  217 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTD-EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT  217 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEET-TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEECCCeEEEEECCC-CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECC
Confidence            788999999999999999976 45566677788899999999976 589999999999999975

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.57  E-value=1.1e-13  Score=65.30  Aligned_cols=66  Identities=20%  Similarity=0.389  Sum_probs=56.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC---cceEEeccCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK---TRVRTLQGHSNWVKNIEFSS--KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|++....   .....+.+|...+.+++|+|  ++..+++++.|+.+++||++
T Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~   89 (351)
T 3f3f_A           19 YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED   89 (351)
T ss_dssp             ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred             EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence            56889999999999999999997522   24555678999999999999  58999999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.56  E-value=1.5e-13  Score=66.79  Aligned_cols=67  Identities=30%  Similarity=0.553  Sum_probs=58.0

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCC------cceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLK------TRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++| +++.+++++.|+.+++|++....      .+...+.+|...+.+++|+|++ ..+++++.|+.+.+||+++
T Consensus        89 ~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  163 (402)
T 2aq5_A           89 WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT  163 (402)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred             eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence            456 78999999999999999997632      4567788899999999999987 7999999999999999763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.56  E-value=1e-13  Score=66.08  Aligned_cols=66  Identities=18%  Similarity=0.277  Sum_probs=56.7

Q ss_pred             eeec---CcEEEEeeCCCCEEEeecCCC-CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLD---TRVFATCSDDTTIALWDARNL-KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+   ++.+++++.|+.+++|++... ......+..|...+.+++|+|++..+++++.|+.+.+||++
T Consensus        47 ~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             ECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            4566   589999999999999999862 33336677899999999999999999999999999999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.56  E-value=2.6e-13  Score=64.67  Aligned_cols=66  Identities=24%  Similarity=0.516  Sum_probs=57.6

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTL---QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++| +++.+++++.|+.+++|++.. ......+   ..|...+.+++|+|++..+++++.|+.+++||+++
T Consensus       123 ~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          123 FHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTT-TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             ECCCCCCEEEEEeCCCeEEEEEeec-CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            456 789999999999999999987 4555555   57889999999999999999999999999999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.56  E-value=2.1e-13  Score=65.01  Aligned_cols=65  Identities=20%  Similarity=0.396  Sum_probs=57.4

Q ss_pred             eeec----CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLD----TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+    +..+++++.|+.+++|+... ......+..|...+.+++|+| ++..+++++.|+.+++||++
T Consensus        77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           77 WTYDSNTSHPLLAVAGSRGIIRIINPIT-MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             EEECTTTCCEEEEEEETTCEEEEECTTT-CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             eccCCCCCCCEEEEecCCCEEEEEEchh-ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            4555    57899999999999999987 566777888999999999999 88999999999999999976

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=5.2e-14  Score=74.35  Aligned_cols=66  Identities=14%  Similarity=0.084  Sum_probs=56.6

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCC--------------------------------------------cceEEeccC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLK--------------------------------------------TRVRTLQGH   36 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------------------~~~~~~~~~   36 (68)
                      +++|+++.+++|+.|+.|++|++....                                            .+...+.+|
T Consensus       495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h  574 (902)
T 2oaj_A          495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN  574 (902)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred             EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence            378999999999999999999986421                                            124566779


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         37 SNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ...|.+++++|++ .+++++.|+++++||++
T Consensus       575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~  604 (902)
T 2oaj_A          575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRR  604 (902)
T ss_dssp             SCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred             CCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence            9999999999999 99999999999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.55  E-value=1.3e-13  Score=73.89  Aligned_cols=65  Identities=25%  Similarity=0.443  Sum_probs=59.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|+..+ ......+.+|...|.+++|+|++..+++++.|+.+.+||..
T Consensus       623 ~s~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          623 FSQDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            678999999999999999999987 56677888999999999999999999999999999999975

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.55  E-value=8.1e-14  Score=65.77  Aligned_cols=66  Identities=18%  Similarity=0.291  Sum_probs=55.4

Q ss_pred             eeecC----cEEEEeeCCCCEEEeecCCC---------------------------------------------CcceEE
Q psy11876          2 IFLDT----RVFATCSDDTTIALWDARNL---------------------------------------------KTRVRT   32 (68)
Q Consensus         2 ~~~~~----~~~~~~~~~~~v~~~~~~~~---------------------------------------------~~~~~~   32 (68)
                      ++|++    +.+++++.|+.+++|++...                                             ......
T Consensus       222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (351)
T 3f3f_A          222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE  301 (351)
T ss_dssp             ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred             ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence            45666    79999999999999998641                                             034455


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         33 LQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+|...+.+++|+|+++.+++++.|+.+++|++.
T Consensus       302 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          302 HDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            67788999999999999999999999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.55  E-value=2.5e-13  Score=64.39  Aligned_cols=66  Identities=26%  Similarity=0.553  Sum_probs=56.1

Q ss_pred             eeec-CcEEEEeeCCCCEEEeecCCCC----cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLD-TRVFATCSDDTTIALWDARNLK----TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~-~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+ +++|++|+.|+.|++|++....    .+...+.+|...|.+++|+|+++.+++++.|+.+.+|+..
T Consensus        46 ~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~  116 (340)
T 4aow_A           46 TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT  116 (340)
T ss_dssp             ECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence            4666 5799999999999999986522    2455677899999999999999999999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.55  E-value=2.5e-13  Score=66.45  Aligned_cols=63  Identities=17%  Similarity=0.347  Sum_probs=56.5

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQG--HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++..+++++.|+.+++|+++. ......+..  |...+.+++|+|++..+++++.|+.+++||++
T Consensus       180 ~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  244 (437)
T 3gre_A          180 EEKSLLVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR  244 (437)
T ss_dssp             SSCEEEEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            5688999999999999999987 566666766  78899999999999999999999999999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.55  E-value=1.9e-13  Score=66.45  Aligned_cols=66  Identities=21%  Similarity=0.320  Sum_probs=57.8

Q ss_pred             eeecC-cEEEEeeCCCCEEEeecCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDT-RVFATCSDDTTIALWDARNLKTRVRTL--QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|++ +.+++++.|+.+++|++.. ......+  ..|...+.+++|+|++..+++++.|+.+++||+++
T Consensus       139 ~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          139 WHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             ECSSBTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred             ECcCCCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence            45676 6999999999999999987 5666667  77899999999999999999999999999999763

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.55  E-value=2.2e-13  Score=66.29  Aligned_cols=65  Identities=25%  Similarity=0.480  Sum_probs=54.5

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEe-------ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTL-------QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++| +++.+++++.|+.+++|+... ......+       .+|...+.+++|+|++..+++++.|+.+++||++
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            456 788999999999999999976 3333333       4688899999999999999999999999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.54  E-value=4e-13  Score=66.14  Aligned_cols=65  Identities=28%  Similarity=0.494  Sum_probs=57.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.++++.+++|+.|+.+++|+..+ ......+.+|...|.+++|++++ .+++++.|+.+++||+++
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred             EEECCCEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence            355788999999999999999987 66777888999999999999887 899999999999999763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=2.7e-13  Score=64.93  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=53.5

Q ss_pred             eee--cCcEEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFL--DTRVFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|  +++.+++++.|+.+++|++.. ....... ..+...+.+++|+|++..+++++.|+.+++||+++
T Consensus       133 ~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          133 GHNEVNTEYFIWADNRGTIGFQSYED-DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             CCC---CCEEEEEETTCCEEEEESSS-SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             cCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            356  788999999999999999987 4444444 33455789999999999999999999999999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.54  E-value=2.1e-13  Score=64.35  Aligned_cols=62  Identities=24%  Similarity=0.545  Sum_probs=52.3

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCc---ceEEeccCCCCEEEEEEcCCC---CEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKT---RVRTLQGHSNWVKNIEFSSKD---NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~   67 (68)
                      ++.|++|+.|+.+++|+......   ....+.+|...|.+++|+|++   ..+++++.|+++++||++
T Consensus       170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence            56899999999999999875221   345677899999999999974   789999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.54  E-value=1.4e-14  Score=69.63  Aligned_cols=66  Identities=20%  Similarity=0.366  Sum_probs=55.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+..... .....+.+|...+.+++|+|+++.+++++.|+.+++||+.
T Consensus        19 ~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C           19 FNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             ECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             ECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            57889999999999999999997622 4555677899999999999999999999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.4e-13  Score=70.30  Aligned_cols=65  Identities=15%  Similarity=0.263  Sum_probs=54.2

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCc------ceEEe----ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKT------RVRTL----QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++|+++.+++|+.||.+++|+......      ....+    .+|...|.+++|+|++  +++++.|+.+++|+..
T Consensus       136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~  210 (588)
T 2j04_A          136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS  210 (588)
T ss_dssp             EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC
Confidence            3689999999999999999999986321      23454    5677899999999998  7888889999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.53  E-value=7.2e-13  Score=65.23  Aligned_cols=65  Identities=20%  Similarity=0.429  Sum_probs=58.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.+++++.|+.+++|++.. ..+...+.+|...+.+++++|++..+++++.|+.+++||++
T Consensus       276 ~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          276 VSGHGNIVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  340 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            356788999999999999999987 66777788899999999999999999999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.1e-13  Score=66.22  Aligned_cols=66  Identities=24%  Similarity=0.516  Sum_probs=56.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC-CcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL-KTRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+.... ......+.+|...+.+++|++.  +..+++++.|+.+++||+.
T Consensus        19 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   87 (379)
T 3jrp_A           19 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   87 (379)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred             EcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence            5788999999999999999998631 3445567789999999999876  8999999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.52  E-value=3.9e-13  Score=67.63  Aligned_cols=65  Identities=15%  Similarity=0.291  Sum_probs=58.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEecc-CCCCEEEEEEcC----------CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQG-HSNWVKNIEFSS----------KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+... ......+.+ |...+..++|+|          ++..+++++.|+.+++|++.
T Consensus       496 ~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~  571 (615)
T 1pgu_A          496 ISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  571 (615)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             ECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence            578999999999999999999987 555556666 889999999999          99999999999999999975

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.52  E-value=5.8e-14  Score=70.87  Aligned_cols=65  Identities=12%  Similarity=0.146  Sum_probs=57.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+.+. ......+.+|...|.+++|+|+++.+++++.|+++++|+..
T Consensus       363 fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          363 YCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             EETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             eCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            577888899999999999999987 45556677899999999999999999999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.52  E-value=1.8e-13  Score=68.86  Aligned_cols=62  Identities=26%  Similarity=0.471  Sum_probs=56.4

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.+++++.|+.+++|++.........+.+|...+..++|+|++. +++++.|+.+++|++.
T Consensus       552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence            8999999999999999999874366777888999999999999999 9999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.52  E-value=5.3e-13  Score=68.63  Aligned_cols=64  Identities=28%  Similarity=0.521  Sum_probs=56.7

Q ss_pred             eecC--cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDT--RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +|++  ..+++++.|+.+++|++.. ......+.+|...+.+++|+|++..+++++.|+.+++||++
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            4554  5799999999999999987 56667788899999999999999999999999999999975

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.52  E-value=3.3e-13  Score=66.75  Aligned_cols=65  Identities=17%  Similarity=0.208  Sum_probs=55.4

Q ss_pred             eeec-CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLD-TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+ +..+++++.|+.+++|+++. .........|...+.+++|+|++..+++++.|+.+++||.+
T Consensus       157 ~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          157 WNPTVPSMVAVCLADGSIAVLQVTE-TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEEESS-SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             ECCCCCCEEEEEECCCeEEEEEcCC-CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            4565 78999999999999999987 34444455678889999999999999999999999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.51  E-value=9.3e-13  Score=62.23  Aligned_cols=65  Identities=37%  Similarity=0.696  Sum_probs=58.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.++.+.+|++.. ......+..|...+..++|+|++..+++++.++.+.+||++
T Consensus       149 ~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  213 (337)
T 1gxr_A          149 ISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCC-CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence            467889999999999999999987 56677778889999999999999999999999999999976

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.51  E-value=2.9e-13  Score=64.79  Aligned_cols=65  Identities=22%  Similarity=0.525  Sum_probs=57.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc--ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT--RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.++.+++|+... ..  ....+..|...+.+++|+|++..+++++.|+.+.+||+.
T Consensus        16 ~s~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C           16 WNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             ECTTSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            568899999999999999999976 33  566777899999999999999999999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.51  E-value=4.6e-13  Score=64.65  Aligned_cols=65  Identities=22%  Similarity=0.288  Sum_probs=57.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec------cC---------------CCCEEEEEEcCCC----------C
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ------GH---------------SNWVKNIEFSSKD----------N   50 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~---------------~~~~~~~~~~~~~----------~   50 (68)
                      ++|+++.+++++.|+.+++|++.. ......+.      .|               ...+..++|+|++          .
T Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~  377 (397)
T 1sq9_A          299 FNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE  377 (397)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc
Confidence            567889999999999999999987 56666676      66               8899999999997          7


Q ss_pred             EEEEEeCCCCEEEEeCC
Q psy11876         51 LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        51 ~~~~~~~~~~i~~~~~~   67 (68)
                      .+++++.|+.+++|++.
T Consensus       378 ~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          378 SLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             EEEEEETTTEEEEEEEE
T ss_pred             eEEEecCCCcEEEEEcC
Confidence            99999999999999975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.9e-13  Score=66.27  Aligned_cols=65  Identities=20%  Similarity=0.477  Sum_probs=58.1

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      ++| ++..+++++.|+.+++|++.. ..+...+..|...+..++|+|++ ..+++++.|+.+++|++.
T Consensus       270 ~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          270 WCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             ECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             eCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            456 789999999999999999987 56777788899999999999988 899999999999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.50  E-value=3.6e-13  Score=69.68  Aligned_cols=65  Identities=17%  Similarity=0.248  Sum_probs=59.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.++.+.+|+..+ ......+..|...+.+++|+|++..+++++.++.+.+|++.
T Consensus        21 ~sp~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A           21 FHPTEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            678999999999999999999987 56677788899999999999999999999999999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.1e-12  Score=62.58  Aligned_cols=66  Identities=17%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.++.+.+|+..........+..|...+..++|+|++..+++++.++.+.+||++
T Consensus       183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            467888999999999999999987445666778889999999999999999999999999999976

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.50  E-value=5.1e-13  Score=64.51  Aligned_cols=65  Identities=28%  Similarity=0.589  Sum_probs=58.1

Q ss_pred             eeecCcEEEEeeCC---CCEEEeecCCCCcceEEecc-------------CCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDD---TTIALWDARNLKTRVRTLQG-------------HSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++|+++.+++++.|   +.+++|++.. ......+..             |...+..++|+|++..+++++.|+.+++||
T Consensus       241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          241 FSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            56788999999999   9999999987 566667777             889999999999999999999999999999


Q ss_pred             CC
Q psy11876         66 IN   67 (68)
Q Consensus        66 ~~   67 (68)
                      ++
T Consensus       320 ~~  321 (397)
T 1sq9_A          320 VK  321 (397)
T ss_dssp             TT
T ss_pred             cC
Confidence            85

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.2e-12  Score=61.45  Aligned_cols=64  Identities=20%  Similarity=0.296  Sum_probs=56.9

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++++.+++++.|+.+++|+... .........|...+.+++|+|++..+++++.++.+.+|++.
T Consensus        26 ~~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~   89 (313)
T 3odt_A           26 AVDDSKVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF   89 (313)
T ss_dssp             EEETTEEEEEETTSEEEEEEESS-SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             ecCCCEEEEEEcCCcEEEEECCC-CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence            37888999999999999999976 55566677888999999999999999999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.49  E-value=1.3e-13  Score=66.31  Aligned_cols=66  Identities=12%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC--cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK--TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|++....  .+......|...+.+++|+|++..+++++.|+.+++||++
T Consensus        63 ~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  130 (377)
T 3dwl_C           63 WAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE  130 (377)
T ss_dssp             ECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred             EeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence            56788999999999999999997632  2456677899999999999999999999999999999975

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.49  E-value=9e-13  Score=63.63  Aligned_cols=64  Identities=19%  Similarity=0.346  Sum_probs=57.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.|+.+++|++.  ..+...+..|...+.+++|+|++. .+++++.|+.+++||++
T Consensus       171 ~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          171 VSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             EETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred             ECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence            56788999999999999999994  456777888999999999999987 99999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.49  E-value=3.4e-13  Score=68.90  Aligned_cols=62  Identities=13%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCC-----CEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSN-----WVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.|+.+++|+...   ....+. |..     .+.+++|+|+++.+++++.|+++++|++.
T Consensus        93 wSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           93 PSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             ECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            689999999999999999999533   343444 444     49999999999999999999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.49  E-value=2e-12  Score=61.30  Aligned_cols=62  Identities=23%  Similarity=0.544  Sum_probs=55.4

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ...+++++.|+.+++|+... ......+.+|...+.+++|+|+++.+++++.|+.+++||+++
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             CcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            45788999999999999987 566777888999999999999999999999999999999763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.8e-12  Score=63.97  Aligned_cols=65  Identities=31%  Similarity=0.462  Sum_probs=56.1

Q ss_pred             eeec---CcEEEEeeCCCCEEEeecCCCCcceEE-eccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLD---TRVFATCSDDTTIALWDARNLKTRVRT-LQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|+   ++.+++++.|+.+++|++.. ...... ..+|...+.+++|+ ++..+++++.|+.+++||+++
T Consensus       203 ~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          203 LIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             EEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred             EcCCCCCCcEEEEEcCCCcEEEEECCC-CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence            5677   88999999999999999987 444444 55889999999999 999999999999999999763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.48  E-value=2e-12  Score=60.79  Aligned_cols=61  Identities=18%  Similarity=0.453  Sum_probs=49.5

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTL--QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++.|++|. |+.|++|+..+ +.....+  ..|...|.+++|+|+++.+++++.|+.+++|++++
T Consensus        36 ~~~lAvg~-D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           36 GNVLAVAL-DNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             TSEEEEEE-TTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEe-CCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence            34677664 89999999987 4444444  46777899999999999999999999999999763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.48  E-value=8.4e-13  Score=62.78  Aligned_cols=61  Identities=21%  Similarity=0.447  Sum_probs=50.2

Q ss_pred             cEEEEeeCCCCEEEeecCCC---CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNL---KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ..+++++.|+.+++|+....   .........|...+..++|+|+++.+++++.|+.+++|+..
T Consensus       229 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            78999999999999998641   11223345678889999999999999999999999999853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.48  E-value=5e-13  Score=65.33  Aligned_cols=66  Identities=15%  Similarity=0.282  Sum_probs=55.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc----------ceEEeccCC------------CCEEEEEEcCCC--CEEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT----------RVRTLQGHS------------NWVKNIEFSSKD--NLLVTAGF   57 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~------------~~~~~~~~~~~~--~~~~~~~~   57 (68)
                      ++|+++.+++|+.|+.+++|+......          ....+.+|.            ..|.+++|+|++  ..+++++.
T Consensus        36 ~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~  115 (447)
T 3dw8_B           36 FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN  115 (447)
T ss_dssp             ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCC
Confidence            678999999999999999999875221          355677887            789999999987  78999999


Q ss_pred             CCCEEEEeCC
Q psy11876         58 DGSIYTWDIN   67 (68)
Q Consensus        58 ~~~i~~~~~~   67 (68)
                      |+.+++|++.
T Consensus       116 d~~i~iw~~~  125 (447)
T 3dw8_B          116 DKTIKLWKIS  125 (447)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCeEEEEecc
Confidence            9999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.48  E-value=9.9e-14  Score=67.59  Aligned_cols=65  Identities=20%  Similarity=0.399  Sum_probs=52.6

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCc----ceEEeccCCCCEEEEEEcC--------CCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKT----RVRTLQGHSNWVKNIEFSS--------KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+++..+++++.|+.+++|+......    ....+.+|...|..++|+|        +++.+++++.|+++++||++
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence            45667899999999999999876221    1223567999999999987        67899999999999999964

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.47  E-value=2.8e-12  Score=61.89  Aligned_cols=66  Identities=24%  Similarity=0.347  Sum_probs=53.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC----------------------------------------------cceEEecc
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK----------------------------------------------TRVRTLQG   35 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------------------------~~~~~~~~   35 (68)
                      ++|+++.+++++.|+.+++|++....                                              .+...+.+
T Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  332 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG  332 (408)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence            45678888899999999999875411                                              23445567


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876         36 HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      |...+.+++|+|++..+++++.|+.+++|++.
T Consensus       333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence            88899999999999999999999999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.47  E-value=1e-12  Score=68.00  Aligned_cols=65  Identities=14%  Similarity=0.331  Sum_probs=59.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+.+|+..+ ......+..|...+.+++|+|++..+++++.|+.+.+|++.
T Consensus        63 ~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~  127 (814)
T 3mkq_A           63 FIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE  127 (814)
T ss_dssp             EEGGGTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred             EeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence            578999999999999999999987 56677788899999999999999999999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.47  E-value=4.5e-12  Score=61.76  Aligned_cols=64  Identities=28%  Similarity=0.416  Sum_probs=55.3

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++..+++++.|+.+++|+..........+..|...+..++|+|++..+++++.|+.+++||+++
T Consensus       185 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence            5678888999999999998754556667788999999999999999999999999999999763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.47  E-value=2.3e-12  Score=61.17  Aligned_cols=66  Identities=27%  Similarity=0.393  Sum_probs=56.3

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCC-----CcceEEeccCCC---------CEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNL-----KTRVRTLQGHSN---------WVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++| +++.+++++.++.+++|++...     ......+..|..         .+..++|+|++..+++++.|+.+++||+
T Consensus       201 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            456 8899999999999999999763     255666776654         8999999999999999999999999997


Q ss_pred             C
Q psy11876         67 N   67 (68)
Q Consensus        67 ~   67 (68)
                      .
T Consensus       281 ~  281 (342)
T 1yfq_A          281 Q  281 (342)
T ss_dssp             T
T ss_pred             c
Confidence            6

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.46  E-value=6.9e-13  Score=63.14  Aligned_cols=67  Identities=15%  Similarity=0.282  Sum_probs=55.0

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCC------------------cceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCCE
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLK------------------TRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDGSI   61 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i   61 (68)
                      ++|++. .+++++.|+.+++|++....                  .....+..|...+..++|+|++..++ +++.|+.+
T Consensus       267 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          267 HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence            467776 89999999999999986421                  23556778889999999999987777 89999999


Q ss_pred             EEEeCCC
Q psy11876         62 YTWDINK   68 (68)
Q Consensus        62 ~~~~~~~   68 (68)
                      ++|++.+
T Consensus       347 ~iw~~~~  353 (357)
T 3i2n_A          347 RVLIVTK  353 (357)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9999763

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.46  E-value=4.7e-12  Score=61.31  Aligned_cols=64  Identities=11%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+.+|+. . ......+..|...+.+++|+|++..+++++.++.+.+||+.
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWNK-T-GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEET-T-SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             EcCCCCEEEEEeCCCeEEEEeC-C-CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            5678999999999999999994 3 45667788899999999999999999999999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.46  E-value=4.4e-12  Score=62.14  Aligned_cols=61  Identities=18%  Similarity=0.453  Sum_probs=50.0

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTL--QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++.|++|. |+.|++|+..+ +.....+  ..|...|.+++|+|++..+++++.|+.+.+||+.+
T Consensus       116 ~n~lAvgl-d~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          116 GNVLAVAL-DNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             TSEEEEEE-TTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEEe-CCEEEEEECCC-CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence            46777775 89999999987 4444433  45677899999999999999999999999999753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.46  E-value=9.7e-13  Score=66.50  Aligned_cols=62  Identities=15%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEE--EEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNI--EFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      +..|++|+.|+.|++|++.....+...+..|...|.++  .+++++ ..+++++.|+++++||++
T Consensus       277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~  341 (524)
T 2j04_B          277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK  341 (524)
T ss_dssp             SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred             CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence            35799999999999999986334555678899999998  467776 899999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=8.7e-13  Score=69.83  Aligned_cols=66  Identities=14%  Similarity=0.129  Sum_probs=54.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc---ceEEe--c-----cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT---RVRTL--Q-----GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.|++|+......   .....  .     +|...|.+++|+|+++.+++++.|+++++|++.
T Consensus       443 ~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~  518 (902)
T 2oaj_A          443 PAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE  518 (902)
T ss_dssp             CCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence            578899999999999999999875211   11111  1     678899999999999999999999999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.45  E-value=2.3e-12  Score=61.43  Aligned_cols=64  Identities=23%  Similarity=0.352  Sum_probs=55.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEE--cCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF--SSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|++.. ... .....|...+.+++|  ++++..+++++.|+.+++||++
T Consensus        94 ~~~~~~~l~s~~~dg~v~iwd~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~  159 (368)
T 3mmy_A           94 WSDDGSKVFTASCDKTAKMWDLSS-NQA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR  159 (368)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred             ECcCCCEEEEEcCCCcEEEEEcCC-CCc-eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence            567889999999999999999986 333 345668899999999  8888899999999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.44  E-value=3.4e-12  Score=59.86  Aligned_cols=63  Identities=29%  Similarity=0.511  Sum_probs=54.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++++. +++++.++.+++|+... ......+..|...+..++|+|++ .+++++.|+.+.+||++
T Consensus       192 ~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          192 VVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             EEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTT
T ss_pred             EcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECC
Confidence            456666 89999999999999987 56777788899999999999988 58889999999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.1e-12  Score=63.44  Aligned_cols=65  Identities=14%  Similarity=0.142  Sum_probs=56.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc--------------------ceEEeccCCC--CEEEEEEcCCCCEEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT--------------------RVRTLQGHSN--WVKNIEFSSKDNLLVTAGFDG   59 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   59 (68)
                      ++|+++.+++++.|+.+++|++.. ..                    ....+..+..  .+..++|+|+++.+++++.|+
T Consensus       338 ~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  416 (425)
T 1r5m_A          338 ISQDGQKYAVAFMDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ  416 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred             EcCCCCEEEEEECCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence            567899999999999999999875 33                    5667777765  899999999999999999999


Q ss_pred             CEEEEeCC
Q psy11876         60 SIYTWDIN   67 (68)
Q Consensus        60 ~i~~~~~~   67 (68)
                      .+.+|+++
T Consensus       417 ~i~iw~~~  424 (425)
T 1r5m_A          417 EGSVVAIP  424 (425)
T ss_dssp             CCEEEECC
T ss_pred             eEEEEeec
Confidence            99999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.44  E-value=9.7e-13  Score=63.78  Aligned_cols=66  Identities=27%  Similarity=0.584  Sum_probs=57.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCC---CCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARN---LKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.|+.+++|+...   .......+..|...+.+++|+|+ +..+++++.|+.+++||++
T Consensus        75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            567889999999999999999975   12356677789999999999998 8999999999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.44  E-value=1.3e-12  Score=64.25  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=55.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      +++++..+++|+.|+.+++|++..  .....+.+|...|.+++|+|.+ ..+++++.|+.+++||++
T Consensus       217 ~~~~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~  281 (435)
T 4e54_B          217 VSASSRMVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR  281 (435)
T ss_dssp             EETTTTEEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred             ECCCCCEEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence            467889999999999999999864  3455677899999999999976 578899999999999976

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.44  E-value=2.8e-12  Score=63.07  Aligned_cols=66  Identities=30%  Similarity=0.625  Sum_probs=56.6

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++. ++++|+.|+.+++|+++....+...+..|...+..++|+|++ ..+++++.|+.+.+||+.
T Consensus       285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            456664 799999999999999987556677788899999999999987 578999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.44  E-value=8e-12  Score=59.06  Aligned_cols=66  Identities=17%  Similarity=0.341  Sum_probs=56.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+..... ........+...+..++|+|++..+++++.++.+.+||++
T Consensus       105 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~  171 (337)
T 1gxr_A          105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            56788999999999999999997632 1445567788889999999999999999999999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.44  E-value=8.8e-12  Score=60.17  Aligned_cols=66  Identities=29%  Similarity=0.450  Sum_probs=54.3

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCCcceEEe---------------ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLKTRVRTL---------------QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++|++. .+++++.|+.+++|+++.........               ..|...+..++|+|++..+++++.|+.+.+||
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence            456766 68999999999999997643333333               46778899999999999999999999999999


Q ss_pred             CC
Q psy11876         66 IN   67 (68)
Q Consensus        66 ~~   67 (68)
                      ++
T Consensus       274 ~~  275 (408)
T 4a11_B          274 SS  275 (408)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.44  E-value=5.6e-12  Score=61.67  Aligned_cols=64  Identities=22%  Similarity=0.429  Sum_probs=53.2

Q ss_pred             eeecC-cEEEEeeCCCCEEEeecCCCCcc----eEEeccCCC------------CEEEEEEcCCCCEEEEEeCCCCEEEE
Q psy11876          2 IFLDT-RVFATCSDDTTIALWDARNLKTR----VRTLQGHSN------------WVKNIEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         2 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      ++|++ +.+++++.|+.+++|+++. ...    ...+..+..            .+.+++|+|+++.+++++. +.+++|
T Consensus       234 ~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw  311 (447)
T 3dw8_B          234 FHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW  311 (447)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred             ECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence            46777 8999999999999999986 332    566766665            8999999999999999998 999999


Q ss_pred             eCC
Q psy11876         65 DIN   67 (68)
Q Consensus        65 ~~~   67 (68)
                      |++
T Consensus       312 d~~  314 (447)
T 3dw8_B          312 DLN  314 (447)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.44  E-value=3.6e-12  Score=61.03  Aligned_cols=66  Identities=15%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCC-----------------CCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEE
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARN-----------------LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      ++|+++.+++++.|+.+++|++..                 .......+..|...+..++|+|++..+++++.|+.+++|
T Consensus       150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  229 (372)
T 1k8k_C          150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA  229 (372)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            467889999999999999999631                 134566677888899999999999999999999999999


Q ss_pred             eCC
Q psy11876         65 DIN   67 (68)
Q Consensus        65 ~~~   67 (68)
                      |++
T Consensus       230 d~~  232 (372)
T 1k8k_C          230 DAD  232 (372)
T ss_dssp             EGG
T ss_pred             ECC
Confidence            974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.43  E-value=2.4e-12  Score=62.13  Aligned_cols=65  Identities=20%  Similarity=0.334  Sum_probs=54.7

Q ss_pred             eeecC-cEEEEeeCCCCEEEeecCCCCcceEEec--cCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDT-RVFATCSDDTTIALWDARNLKTRVRTLQ--GHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++ +.+++|+.|+.+++|+... ......+.  +|...+.+++|+| ++..+++++.|+.+++||++
T Consensus        81 ~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           81 WHPTHPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             ECSSCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             ECCCCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            46777 8999999999999999986 33344443  6889999999999 67899999999999999975

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.43  E-value=2.9e-12  Score=60.85  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=55.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC--cceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK--TRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~   66 (68)
                      ++|++..+++++.|+.+++|+.....  ........|...+.+++|+|++. .+++++.++.+.+|++
T Consensus        19 ~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A           19 IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             EEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             EcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            57889999999999999999987632  12444557888999999999999 9999999999999997

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=4.9e-12  Score=60.55  Aligned_cols=62  Identities=23%  Similarity=0.474  Sum_probs=54.3

Q ss_pred             CcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++.+++++.|+.+++|+..... ........|...+.+++|+|+  +..+++++.|+.+.+||++
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence            7899999999999999997622 155567778899999999998  8999999999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.1e-12  Score=68.23  Aligned_cols=66  Identities=24%  Similarity=0.516  Sum_probs=57.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCC-CcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNL-KTRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|+.... ......+.+|...|.+++|++.  +..+++++.|+.+++||+.
T Consensus        17 ~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A           17 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             CCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred             ECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence            5788999999999999999998631 3455667889999999999987  8999999999999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.41  E-value=1e-11  Score=61.03  Aligned_cols=63  Identities=25%  Similarity=0.552  Sum_probs=53.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.++++.+++|+.|+.+++|+..+ ......+.+|...+.++++  ++..+++++.|+.+++||+.
T Consensus       139 ~~~d~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          139 LQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             EECCSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EEECCCEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            345788999999999999999877 5667778889999988887  67899999999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.41  E-value=7.9e-13  Score=64.71  Aligned_cols=65  Identities=17%  Similarity=0.311  Sum_probs=54.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec-cCCCCEEEEEEcC----CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ-GHSNWVKNIEFSS----KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|+++. ..+...+. .+...+.+++++|    ++..+++++.|+.+++||++
T Consensus       222 ~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          222 IDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            567899999999999999999987 55565554 6777889997765    46689999999999999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.40  E-value=7.4e-12  Score=60.69  Aligned_cols=67  Identities=18%  Similarity=0.210  Sum_probs=53.6

Q ss_pred             eeecCcEEEEeeCCC----CEEEeecCCCCc---ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDT----TIALWDARNLKT---RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~----~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|++..+++++.++    .+..|+......   ....+..|...|.+++|+|+++++++++.|+.|++||.++
T Consensus       227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence            678999999988876    567777754211   2334667888999999999999999999999999999763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.40  E-value=1.4e-11  Score=60.64  Aligned_cols=67  Identities=25%  Similarity=0.549  Sum_probs=56.1

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCC--cceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeCCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLK--TRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~   68 (68)
                      ++| ++..+++++.|+.+++|+++...  .+...+..|...+.+++|+|.+. .+++++.++.+.+||+++
T Consensus       239 ~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            345 57899999999999999998632  45666778899999999999875 788999999999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.40  E-value=3.6e-12  Score=60.70  Aligned_cols=62  Identities=23%  Similarity=0.416  Sum_probs=53.2

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEE------cCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF------SSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..+++++.|+.+++|+......+...+..|...+.++.|      ++++..+++++.|+.+++||++
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~  147 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR  147 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence            6899999999999999998743367788889999999955      5788899999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.40  E-value=1.5e-11  Score=60.56  Aligned_cols=63  Identities=25%  Similarity=0.487  Sum_probs=54.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.++++.+++|+.|+.+++|+..+ ......+.+|...+.+++++  +..+++++.|+.+++||+.
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             EEEcCCEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            456788999999999999999987 56677788899999999886  5689999999999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.40  E-value=1e-11  Score=66.81  Aligned_cols=65  Identities=32%  Similarity=0.504  Sum_probs=58.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS--KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|+..+ ......+.+|...+.+++|++  +...+++++.|+.+.+||++
T Consensus       665 ~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~  731 (1249)
T 3sfz_A          665 FSSDDSYIATCSADKKVKIWDSAT-GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN  731 (1249)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred             EecCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence            578899999999999999999987 667778889999999999999  45688999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.39  E-value=1.4e-11  Score=60.09  Aligned_cols=65  Identities=29%  Similarity=0.449  Sum_probs=55.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEe--CCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKD-NLLVTAG--FDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+++|++.. ..+...+..|...+.+++|+|++ ..+++++  .|+.+.+||++
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred             EcCCCCEEEEEeCCCeEEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence            467889999999999999999987 56677778899999999999965 6777765  79999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.38  E-value=2.2e-11  Score=58.78  Aligned_cols=56  Identities=16%  Similarity=0.214  Sum_probs=47.9

Q ss_pred             eeCCCCEEEeecCCCC--------------cc-eEEeccCCCCEEEEEEcCCCCEEEEEeCCCC-EEEEeCC
Q psy11876         12 CSDDTTIALWDARNLK--------------TR-VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS-IYTWDIN   67 (68)
Q Consensus        12 ~~~~~~v~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~   67 (68)
                      |+.++.+++|++....              .+ ...+.+|...|.+++|+|++.++++++.|++ +++||++
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            6899999999997622              12 5678899999999999999999999999999 9999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.8e-11  Score=63.83  Aligned_cols=65  Identities=22%  Similarity=0.427  Sum_probs=56.0

Q ss_pred             eec--CcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLD--TRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++  ++.+++|+.|+.+++|+..... ........|...+.+++|+|+  +..+++++.|+.+++||++
T Consensus        62 s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             CCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             cCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            455  8899999999999999997622 145667789999999999998  8999999999999999975

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.34  E-value=1.6e-12  Score=64.32  Aligned_cols=66  Identities=17%  Similarity=0.320  Sum_probs=53.0

Q ss_pred             eeecCcEEE----EeeCCCCEEEeecCCC-----C--cc---eEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFA----TCSDDTTIALWDARNL-----K--TR---VRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~----~~~~~~~v~~~~~~~~-----~--~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++++.++    +++.|+.+++|++...     .  .+   .....+|...+..++|+|+ +..+++++.|+++++||+
T Consensus       100 ~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          100 LSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             ECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred             EcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence            567888888    7889999999997531     0  11   2334568889999999997 789999999999999997


Q ss_pred             C
Q psy11876         67 N   67 (68)
Q Consensus        67 ~   67 (68)
                      +
T Consensus       180 ~  180 (434)
T 2oit_A          180 T  180 (434)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.34  E-value=8.5e-12  Score=61.57  Aligned_cols=66  Identities=12%  Similarity=0.164  Sum_probs=55.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc---ceEEeccCCCCEEEEEEcCC---CCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT---RVRTLQGHSNWVKNIEFSSK---DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.++.+.+|++.....   +...+.+|...+.+++|+|+   +..+++++.|+.+++||++
T Consensus       157 ~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          157 IAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred             EcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence            567899999999999999999865221   22255678889999999999   8899999999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.29  E-value=2.2e-10  Score=56.36  Aligned_cols=61  Identities=34%  Similarity=0.588  Sum_probs=53.5

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+++.+++|+.|+.+++|+..+ ......+..|...+.++++++  ..+++++.|+.+.+||++
T Consensus       181 ~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  241 (435)
T 1p22_A          181 YDERVIITGSSDSTVRVWDVNT-GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA  241 (435)
T ss_dssp             CCSSEEEEEETTSCEEEEESSS-CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECS
T ss_pred             ECCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCC
Confidence            4788999999999999999987 566777888999999999864  589999999999999975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.28  E-value=5.2e-11  Score=58.09  Aligned_cols=62  Identities=8%  Similarity=0.062  Sum_probs=46.6

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCC---CCEEEEEEcCCCCEE------------EEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHS---NWVKNIEFSSKDNLL------------VTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------------~~~~~~~~i~~~~~~   67 (68)
                      ++..+++++.|+.|++|+..+ +..+..+.++.   ..+..++|+|++..+            ++++.|+++++||..
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~T-Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKT-GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTT-CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred             CCceEEEecCCCcEEEEECCC-CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence            568899999999999999988 66677776543   356677899988765            567788999999965

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.27  E-value=1.9e-10  Score=56.65  Aligned_cols=64  Identities=25%  Similarity=0.405  Sum_probs=53.6

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEe-----ccCCCCEEEEEEcCCCCEEEEEeCCCC----EEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTL-----QGHSNWVKNIEFSSKDNLLVTAGFDGS----IYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~   67 (68)
                      ..+++.+++++.|+.+++|+... ......+     ..+...+..++|+|++..+++++.|+.    +.+||+.
T Consensus       369 ~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          369 QFNKNFVITSSDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EECSSEEEEEETTSEEEEEETTT-CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EECCCEEEEEeCCCeEEEEECCC-CceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            34678999999999999999987 4444444     356778999999999999999999998    9999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.12  E-value=1.2e-09  Score=53.43  Aligned_cols=64  Identities=11%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      ++++..+++++.++.+++|+... ......+..+...+..++|+|++..+ +++..++.+.+||++
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCCCEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            46788999999999999999987 45566676788889999999998766 455578999999975

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.02  E-value=1e-09  Score=53.71  Aligned_cols=65  Identities=17%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceE-----EeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVR-----TLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.++.+.+|+... .....     ....|...+..++|++++..+++++.++.+.+||..
T Consensus       130 ~s~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          130 FIDNTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             ESSSSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred             EeCCCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence            456677888888889999999976 33333     233567788999999999999999999999999975

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.00  E-value=7.9e-09  Score=50.05  Aligned_cols=64  Identities=14%  Similarity=0.157  Sum_probs=49.0

Q ss_pred             eeecCcEE-EEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVF-ATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+ ++++.++.+++|+... ......+..+. .+..++|+|+++.+ +++..++.+.+||+.
T Consensus        39 ~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           39 ISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            56788765 6777899999999977 45555554443 78999999998766 455567999999975

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.98  E-value=2.1e-08  Score=48.58  Aligned_cols=64  Identities=9%  Similarity=0.059  Sum_probs=49.9

Q ss_pred             eeecCcEEEEee---CCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCS---DDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++   .++.+.+|+... ......+..+. .+..++++|+++.+ ++++.++.+.+||..
T Consensus       207 ~~~~g~~l~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          207 VNPEGTKAYVTNVDKYFNTVSMIDTGT-NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTT-TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ECCCCCEEEEEecCcCCCcEEEEECCC-CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            567888888777   689999999987 45555555544 46789999998766 677889999999975

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.93  E-value=7.2e-08  Score=47.69  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=49.6

Q ss_pred             eeecCcEEEEeeCCC---CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCC--EEEEeCC
Q psy11876          2 IFLDTRVFATCSDDT---TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDGS--IYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~~   67 (68)
                      ++|+++.++.++.++   .+++|++.. ... ..+..+...+..++|+|+++.++ +++.++.  +.+||+.
T Consensus       186 ~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~  255 (415)
T 2hqs_A          186 WSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  255 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence            678999999998875   899999986 333 34556777889999999998776 6666654  8888875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.93  E-value=2.3e-08  Score=51.07  Aligned_cols=63  Identities=25%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++|++..++++..++.+.+|+..+ ......+..... ++.++++|+++.+.+++.++.+.+||+
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~  207 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDL  207 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEEC
Confidence            456778889999999999999987 455556653333 789999999999999999999999998

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.88  E-value=4.5e-08  Score=50.01  Aligned_cols=64  Identities=16%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeec--CCCCcceEEeccCCCCEEEEEEcC----CCCEEEEEe-CCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDA--RNLKTRVRTLQGHSNWVKNIEFSS----KDNLLVTAG-FDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.++.+.+|+.  .+ ......+. +...+..++++|    +++.+.+++ .++++.+||..
T Consensus       186 ~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          186 MSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             ECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             ECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            6889999999999999999999  55 44455555 344568999999    998887776 58999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.88  E-value=2.2e-08  Score=54.04  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=52.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC----------CCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD----------GSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~   67 (68)
                      ++|+++.++.++.++.+++|+..+ .........+...+..++|+|+++.++.++.+          +.+.+||..
T Consensus       386 ~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          386 VDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             ECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            578999999999999999999977 44444555677778899999999988776654          489999875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.86  E-value=3.6e-08  Score=50.21  Aligned_cols=64  Identities=8%  Similarity=-0.049  Sum_probs=50.6

Q ss_pred             eeecCcEEEEeeCC----CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC--CEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD----TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG--SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~   67 (68)
                      ++|||+.++.++.+    ..+.+|+... .. ...+..+...+...+|+|+++.+++...++  .|.+||..
T Consensus       157 ~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          157 SDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR  226 (582)
T ss_dssp             EEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred             ECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence            67999999977776    6788888765 33 335667777788999999999988777787  78888864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.70  E-value=1.6e-07  Score=48.86  Aligned_cols=64  Identities=13%  Similarity=0.158  Sum_probs=48.0

Q ss_pred             eeecCcEEEEeeC-CC-----CEEEeecCCCCcceEEeccCCC------------------------CEEEEEEcCCCCE
Q psy11876          2 IFLDTRVFATCSD-DT-----TIALWDARNLKTRVRTLQGHSN------------------------WVKNIEFSSKDNL   51 (68)
Q Consensus         2 ~~~~~~~~~~~~~-~~-----~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~   51 (68)
                      ++||++.++.++. ++     .+.+|+... .........+..                        .+..++|+|+++.
T Consensus        44 ~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~  122 (741)
T 2ecf_A           44 VAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR  122 (741)
T ss_dssp             ECTTSSEEEEEECCSSCTTEEEEEEEETTT-CCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred             EecCCCEEEEEeccCCCCcccEEEEEECCC-CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence            6789999999888 77     899999876 333333332221                        2678899999998


Q ss_pred             EEEEeCCCCEEEEeCC
Q psy11876         52 LVTAGFDGSIYTWDIN   67 (68)
Q Consensus        52 ~~~~~~~~~i~~~~~~   67 (68)
                      ++.++. +.+.+||..
T Consensus       123 l~~~~~-~~i~~~d~~  137 (741)
T 2ecf_A          123 LLFPLG-GELYLYDLK  137 (741)
T ss_dssp             EEEEET-TEEEEEESS
T ss_pred             EEEEeC-CcEEEEECC
Confidence            888775 899999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.68  E-value=4.1e-07  Score=43.12  Aligned_cols=62  Identities=8%  Similarity=0.113  Sum_probs=47.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.++++  ++.+.+|+... ......+.. ...+..++|+|+++.+..++.++.+.+||..
T Consensus       248 ~s~dg~~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          248 VNPAKTRAFGA--YNVLESFDLEK-NASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             ECTTSSEEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             ECCCCCEEEEe--CCeEEEEECCC-CcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence            46788888877  68999999976 444444432 3446788999999888878889999999975

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.66  E-value=2.8e-07  Score=42.77  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=47.9

Q ss_pred             eeecCcEEEEee-CCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-----------CCEEEEeCC
Q psy11876          2 IFLDTRVFATCS-DDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD-----------GSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~~   67 (68)
                      ++|+++.++.++ .++.+.+|.+.........+..+...+..+.|+|+++.++.++.+           ..+.+||..
T Consensus       180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             ECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence            467888766555 588899998863244455666666777889999999888776654           468888864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.66  E-value=9.2e-08  Score=49.62  Aligned_cols=64  Identities=17%  Similarity=0.183  Sum_probs=48.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCC---CEEEEEEcCCCCEEEEEeCC---------CCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSN---WVKNIEFSSKDNLLVTAGFD---------GSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~   67 (68)
                      ++|+++++++ +.|+.+++|+..+ .........+..   .+..++|+|+++.++.++.+         +.+.+||+.
T Consensus        24 ~spdg~~~~~-~~dg~i~~~d~~~-g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~   99 (723)
T 1xfd_A           24 WISDTEFIYR-EQKGTVRLWNVET-NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (723)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGG-CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EcCCCcEEEE-eCCCCEEEEECCC-CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence            5788886665 6789999999976 444445554543   37899999999988888654         678899865

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.66  E-value=5.2e-07  Score=41.86  Aligned_cols=65  Identities=11%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             eeecCcEEE-EeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCCEEEEeC
Q psy11876          2 IFLDTRVFA-TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~   66 (68)
                      ++|+++.++ ++..++.+.+|.+.........+..+...+..+.|+|+++.++..+ .++.+.+|++
T Consensus       136 ~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~  202 (297)
T 2ojh_A          136 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV  202 (297)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence            567887665 7878898999986532334455666777889999999998766554 5888888875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.65  E-value=1.5e-06  Score=43.10  Aligned_cols=64  Identities=16%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             eeecCcEEE-EeeCCCC--EEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CC--CEEEEeCC
Q psy11876          2 IFLDTRVFA-TCSDDTT--IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF-DG--SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~i~~~~~~   67 (68)
                      ++|+++.++ +++.++.  +.+|+... .. ...+..+...+..++|+|+++.++..+. ++  .+.+||..
T Consensus       230 ~spdg~~la~~~~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          230 FSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTT-CC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             EcCCCCEEEEEEecCCCceEEEEECCC-CC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            578898776 6666655  78888876 32 3456667778899999999987776665 45  56666754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.65  E-value=3.2e-08  Score=50.41  Aligned_cols=63  Identities=17%  Similarity=0.095  Sum_probs=48.5

Q ss_pred             eeecCcEEEEeeCCC--CEEEeecCCCCcceEEeccCCCCEEEEE--------EcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDT--TIALWDARNLKTRVRTLQGHSNWVKNIE--------FSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++||++.++++..++  .+.+|+... .... ....+...+....        |+|++..+++++.++.+.+|++
T Consensus       202 ~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          202 ISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            688999999888888  788888876 3333 5555555454455        9999988899999999999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.63  E-value=3.7e-07  Score=43.51  Aligned_cols=62  Identities=11%  Similarity=0.123  Sum_probs=45.8

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++| +++.++.+  ++.+.+|+..+ ......+.. ...+..+++++++..+..++.++.+.+||..
T Consensus       262 ~sp~dg~~l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          262 RSPKDPNQIYGV--LNRLAKYDLKQ-RKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             ECSSCTTEEEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             ecCCCCCEEEEE--cCeEEEEECcc-CeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence            357 88888887  78999999976 444434432 2345788999998766667778999999975

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.60  E-value=9.4e-07  Score=46.12  Aligned_cols=64  Identities=14%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc-ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT-RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++||++.++.++. +.+.+|+...... ....+..+...+..++|+|+++.++.++ ++.+.+||..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~  180 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLA  180 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecC
Confidence            6789999988886 8999999876210 2334555667789999999999888876 4689999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.58  E-value=9.2e-07  Score=42.06  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=45.5

Q ss_pred             eeecCcEEEEeeC-CCCEEEeecCCCCcc-eEEeccCCCCEEEEEEcCCCCEEEEEeCCC---CEEEEeCC
Q psy11876          2 IFLDTRVFATCSD-DTTIALWDARNLKTR-VRTLQGHSNWVKNIEFSSKDNLLVTAGFDG---SIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~   67 (68)
                      ++|+++.+++++. ++.+.+|+... ... ......+......++++|+++.+++...++   .+.+||..
T Consensus        47 ~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           47 ITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             ECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             EcCCCCEEEEEeCCCCeEEEEECCC-CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            5788886655555 78999999977 333 444555555544489999998888554442   89999975

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.57  E-value=9.2e-07  Score=42.00  Aligned_cols=64  Identities=6%  Similarity=0.001  Sum_probs=45.0

Q ss_pred             eeecCcEEEEeeCC-CCEEEeecCCC-Cc--ceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDD-TTIALWDARNL-KT--RVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-~~v~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~   66 (68)
                      ++|+++.+++++.+ +.+.+|++... ..  ......... .+..++|+|+++.++.++ .++.+.+|++
T Consensus        45 ~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           45 VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            57888888888876 89999998721 22  222333333 668899999998665554 5788999986

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.57  E-value=4.1e-06  Score=40.04  Aligned_cols=65  Identities=9%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEecc----CCCCEEEEEEcCCCCEEEEE-eCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQG----HSNWVKNIEFSSKDNLLVTA-GFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~   67 (68)
                      ++|+++.++.+..++.+.+|+..+ .........    +...+..++++|++..+... ..++.+.+||..
T Consensus       192 ~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          192 LDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             EETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            567889999999999999999876 444434332    34456778999998765544 445899999875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.57  E-value=9.8e-07  Score=42.16  Aligned_cols=65  Identities=18%  Similarity=0.170  Sum_probs=48.5

Q ss_pred             eeecCcEEEEee--CCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCS--DDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.++.+.  .++.+.+|+... ......+..+...+..+.++|+++.+...+.++.+.+||..
T Consensus       148 ~s~dg~~l~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~  214 (353)
T 3vgz_A          148 ADDATNTVYISGIGKESVIWVVDGGN-IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA  214 (353)
T ss_dssp             EETTTTEEEEEEESSSCEEEEEETTT-TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred             ECCCCCEEEEEecCCCceEEEEcCCC-CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence            467777776665  467899999976 44454554344456788999999888888889999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.54  E-value=6.3e-07  Score=43.44  Aligned_cols=65  Identities=14%  Similarity=0.076  Sum_probs=44.8

Q ss_pred             eeecCcEEEEeeC-CCC--EEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSD-DTT--IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~-~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++||++.++.++. ++.  +.+|+... .........+...+....|+|+++.++....++.+.+||+.
T Consensus        43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~  110 (388)
T 3pe7_A           43 FTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA  110 (388)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETT
T ss_pred             CCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECC
Confidence            6889988877776 664  66667655 33332233333333356799999999988888889999875

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.53  E-value=2e-06  Score=42.04  Aligned_cols=63  Identities=19%  Similarity=0.341  Sum_probs=46.3

Q ss_pred             eeecCcEEEEeeC-----------CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSD-----------DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++++++.++.+..           ...+.+||..+ .+.+..+..+.  ...++++|+++.+.+++. +.+.+||..+
T Consensus       261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t  334 (361)
T 2oiz_A          261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ  334 (361)
T ss_dssp             EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred             EecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence            4566666665432           34788999987 55666666655  789999999988887776 9999999753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.51  E-value=1.8e-06  Score=41.47  Aligned_cols=65  Identities=8%  Similarity=0.198  Sum_probs=45.2

Q ss_pred             eeecCcEE-EEeeCCCCEEEeecCCCC--cceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCCEEEEeC
Q psy11876          2 IFLDTRVF-ATCSDDTTIALWDARNLK--TRVRTLQGHSNWVKNIEFSSKDNLLVTAGF-DGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~   66 (68)
                      ++|+++.+ ++...++.+.+|++....  ........+...+..++|+|+++.++.++. ++.+.+|++
T Consensus       247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            67888876 555567899999986322  223334444555678999999987766655 588999943

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.50  E-value=4.9e-06  Score=39.54  Aligned_cols=66  Identities=14%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             eeecCcEEEEee-CCCCEEEeecCCCCcceE----Eec-cCCCCEEEEEEcCCCCEEE-EEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCS-DDTTIALWDARNLKTRVR----TLQ-GHSNWVKNIEFSSKDNLLV-TAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++ .++.+.+|++........    ... .....+..++|+|+++.+. +...++.+.+|++.
T Consensus       136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            567888777776 789999999875222211    122 2234667899999987554 55578999999873

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.50  E-value=3.7e-07  Score=47.52  Aligned_cols=64  Identities=13%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCC---CEEEEEEcCCCCEEEEEeC---------CCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSN---WVKNIEFSSKDNLLVTAGF---------DGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~   67 (68)
                      ++|++.+++.+ .++.+++|+... .........+..   .+..++|+|+++.++.++.         ++.+.+||+.
T Consensus        23 ~s~dg~~~~~~-~d~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           23 WISGQEYLHQS-ADNNIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             ESSSSEEEEEC-TTSCEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ECCCCeEEEEc-CCCCEEEEEcCC-CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            46778655544 589999999976 444444443322   3788999999998887765         6899999875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.48  E-value=3.2e-06  Score=40.57  Aligned_cols=66  Identities=9%  Similarity=0.148  Sum_probs=45.2

Q ss_pred             eeecCcEEEEee-CCCCEEEeecCCCCc--ceEEecc---------CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCS-DDTTIALWDARNLKT--RVRTLQG---------HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++ .++.+.+|++.....  .......         ....+..++++|+++.+++...++.+.+|++.
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence            578898887777 678899999863222  1222211         11246789999998866666678889999865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.48  E-value=4.5e-06  Score=39.80  Aligned_cols=65  Identities=11%  Similarity=0.083  Sum_probs=47.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCC-CCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHS-NWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      +.+++..+++++.++.+.+|+..+ ......+.... ..+..++++|+++.+ ++...++.+.+||..
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~   73 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   73 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCC-CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence            456778889999999999999977 44444444332 145788999998754 566678899999875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.46  E-value=2.1e-06  Score=44.73  Aligned_cols=55  Identities=11%  Similarity=-0.019  Sum_probs=38.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCC------------------EEEEEEcCCCCEEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNW------------------VKNIEFSSKDNLLVTAGFD   58 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~   58 (68)
                      ++||++.++.++. +.+.+|+... .........+...                  +..+.|+|+++.++.++.+
T Consensus       121 ~SPdG~~la~~~~-~~i~~~~~~~-g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          121 WGPKGQQLIFIFE-NNIYYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             BCSSTTCEEEEET-TEEEEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ECCCCCEEEEEEC-CeEEEEECCC-CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence            6899998888886 6899999876 3333333332222                  2679999999988877643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.43  E-value=4.2e-06  Score=39.68  Aligned_cols=62  Identities=16%  Similarity=0.269  Sum_probs=44.5

Q ss_pred             eeecCcEEEEee------------CCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCS------------DDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.++.+.            .++.+.+|+... ......+.. ...+..+.|+|+++.++.+  ++.+.+||..
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~  162 (337)
T 1pby_B           89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPE  162 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETT
T ss_pred             ECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECC
Confidence            467888887775            568999999976 444444433 3446778899998766665  6889999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.43  E-value=8e-06  Score=38.85  Aligned_cols=63  Identities=8%  Similarity=0.074  Sum_probs=44.4

Q ss_pred             eecC-cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCCEEEEeCC
Q psy11876          3 FLDT-RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA-GFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~   67 (68)
                      ..++ ..+++...++.+.+|+..+ .........+.... .++++|+++.+... ..++.+.+||..
T Consensus         6 ~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~   70 (331)
T 3u4y_A            6 QTTSNFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ   70 (331)
T ss_dssp             -CCCCEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS
T ss_pred             cCCCCEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            3444 4577888889999999987 44444554444555 89999998755544 447899999875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.41  E-value=3.1e-06  Score=44.06  Aligned_cols=53  Identities=15%  Similarity=0.363  Sum_probs=35.9

Q ss_pred             CCCCEEEeecCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCC-----CEEEEeCC
Q psy11876         14 DDTTIALWDARNLKTRVRTL--QGHSNWVKNIEFSSKDNLLVTAGFDG-----SIYTWDIN   67 (68)
Q Consensus        14 ~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~   67 (68)
                      .+..+.+|+... .......  ..+...+..++|+|+++.++.++.++     .+.+||..
T Consensus       233 ~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~  292 (706)
T 2z3z_A          233 HHVTVGIYHLAT-GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE  292 (706)
T ss_dssp             CEEEEEEEETTT-TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT
T ss_pred             CeeEEEEEECCC-CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC
Confidence            345688888876 3322222  13456678999999999888766554     78888865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.39  E-value=4.9e-06  Score=40.18  Aligned_cols=64  Identities=13%  Similarity=0.117  Sum_probs=44.1

Q ss_pred             eeecCcEEEEeeCC--CCEEEeecCCC-Cc--ceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDD--TTIALWDARNL-KT--RVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~--~~v~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~   66 (68)
                      ++|+++.++++..+  +.+.+|++... ..  ....... ...+..++|+|+++.++.++ .++.+.+|.+
T Consensus       266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            67899988776665  78999998621 22  2222333 44567899999998777666 5688999653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.36  E-value=4.7e-06  Score=40.25  Aligned_cols=65  Identities=9%  Similarity=0.107  Sum_probs=44.1

Q ss_pred             eeecCcEEEEee-CCCCEEEeecCCCCcc--eEEec---cCCCCEEEEEEcCCCCEEEEEeC--CCCEEEEeCC
Q psy11876          2 IFLDTRVFATCS-DDTTIALWDARNLKTR--VRTLQ---GHSNWVKNIEFSSKDNLLVTAGF--DGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~   67 (68)
                      ++|+++.++.+. .++.+.+|++.. ...  .....   .+......++|+|+++.+.....  ++.+.+|++.
T Consensus       218 ~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          218 FNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             ECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            678888776666 688999999864 221  11221   22244578999999987755544  5889999863

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.30  E-value=4.1e-06  Score=43.74  Aligned_cols=55  Identities=16%  Similarity=0.154  Sum_probs=36.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEE-eccCCCCE-----------------EEEEEcCCCCEEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRT-LQGHSNWV-----------------KNIEFSSKDNLLVTAGFD   58 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~   58 (68)
                      ++||++.|+.+. ++.+++|+... ...... ..++...+                 ..+.|+|+++.++.++.+
T Consensus       117 ~SPDG~~la~~~-~~~i~~~~~~~-g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          117 WSPVGSKLAYVY-QNNIYLKQRPG-DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             ECSSTTCEEEEE-TTEEEEESSTT-SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             ECCCCCEEEEEE-CCeEEEEeCCC-CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            689999888886 67999999865 222211 12222212                 378999999988877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.30  E-value=1.1e-05  Score=44.04  Aligned_cols=61  Identities=15%  Similarity=0.169  Sum_probs=47.0

Q ss_pred             cCcEEEEeeCCCCEE-EeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIA-LWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.++.++.+..+. +|+... .. ...+..+...+..++|+|+++.++.++.++.+.+||+.
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~-~~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~  408 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRT-GK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  408 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTT-CC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCeEEEEECCCceEEEEECCC-CC-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence            667777777776677 777765 22 23344666788999999999999999999999999975

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.27  E-value=2e-05  Score=38.38  Aligned_cols=66  Identities=11%  Similarity=0.130  Sum_probs=44.1

Q ss_pred             eeecCcE--EEEee-------------CCCCEEEeecCCCCcceEEec----cCCCCEEEEEEcCCCCEEEEEeC-CCCE
Q psy11876          2 IFLDTRV--FATCS-------------DDTTIALWDARNLKTRVRTLQ----GHSNWVKNIEFSSKDNLLVTAGF-DGSI   61 (68)
Q Consensus         2 ~~~~~~~--~~~~~-------------~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~i   61 (68)
                      ++|+++.  ++++.             .++.+.+|++...........    .+...+..++|+|+++.+..++. ++.+
T Consensus        90 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v  169 (365)
T 1jof_A           90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKL  169 (365)
T ss_dssp             TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEE
Confidence            5678873  45553             678899999864233222222    23456789999999987766554 5789


Q ss_pred             EEEeCC
Q psy11876         62 YTWDIN   67 (68)
Q Consensus        62 ~~~~~~   67 (68)
                      .+|++.
T Consensus       170 ~~~~~~  175 (365)
T 1jof_A          170 WTHRKL  175 (365)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.26  E-value=2.3e-05  Score=36.76  Aligned_cols=63  Identities=6%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             eeecCcEEEEeeCCC-CEEEeecCCCCcceEEeccCC--CCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDT-TIALWDARNLKTRVRTLQGHS--NWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.++++++++...++ .+.+|+...  .....+..+.  ..+..+++.++++++++ +.++.+.+|++.
T Consensus       214 ~d~~G~l~v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          214 INSNGEILIADNHNNFNLTIFTQDG--QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             ECTTCCEEEEECSSSCEEEEECTTS--CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             ECCCCCEEEEeCCCCEEEEEECCCC--CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            456777777776665 899998643  3333443332  23678899999887777 568999999874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.21  E-value=4.8e-05  Score=36.35  Aligned_cols=64  Identities=19%  Similarity=0.121  Sum_probs=44.9

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC----CCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD----GSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~   67 (68)
                      .+++++++++..++.+.+|+... .............+..+++.++++++++...+    +.+.+||..
T Consensus        53 ~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~  120 (333)
T 2dg1_A           53 DRQGQLFLLDVFEGNIFKINPET-KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  120 (333)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTT-CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence            46777777777788899998865 33222222445678899999999888777655    578888754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.20  E-value=4.6e-05  Score=36.00  Aligned_cols=62  Identities=6%  Similarity=-0.022  Sum_probs=47.8

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +.++++ .++++..++.+..|+... .  ...+......+..+++.++++++++...++.+.+|+.
T Consensus        35 ~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           35 YVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            456777 778888888999999876 3  4445555667889999999988887777788888886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.20  E-value=5.5e-06  Score=43.70  Aligned_cols=63  Identities=14%  Similarity=0.135  Sum_probs=46.8

Q ss_pred             eeecCcEEEEeeCC---------CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD---------TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++||++.++.++.+         +.+.+|++.+ +. ...+..+...+...+|+|+++.++.+ .++.|.+|+..
T Consensus        69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~-~~-~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~  140 (740)
T 4a5s_A           69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEP  140 (740)
T ss_dssp             ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESST
T ss_pred             ECCCCCEEEEEECCeeeEEEccceEEEEEECCC-Cc-EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECC
Confidence            58999998888875         4556899876 32 22345566678899999999888777 46788888764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.14  E-value=4.3e-05  Score=39.67  Aligned_cols=63  Identities=16%  Similarity=0.080  Sum_probs=42.5

Q ss_pred             eeecCcEEEEeeCC--------CCEEEeecCCCC---cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEE
Q psy11876          2 IFLDTRVFATCSDD--------TTIALWDARNLK---TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         2 ~~~~~~~~~~~~~~--------~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      ++||++.|+.++.+        ..+.+|++....   ........+...+....|+|+++++++...++...+|
T Consensus       195 ~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~  268 (662)
T 3azo_A          195 LSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLH  268 (662)
T ss_dssp             ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEE
T ss_pred             ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEE
Confidence            67899988877644        368888887213   2222333345678899999999877788777744444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.11  E-value=8e-05  Score=38.98  Aligned_cols=65  Identities=17%  Similarity=0.117  Sum_probs=44.7

Q ss_pred             eee--cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEE-EEEcCCCCEEEE-EeCCC----CEEEEeC
Q psy11876          2 IFL--DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKN-IEFSSKDNLLVT-AGFDG----SIYTWDI   66 (68)
Q Consensus         2 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~i~~~~~   66 (68)
                      ++|  ++++++++..++.+.+|.+.........+..+...+.. +.|+|+++.++. +..++    .+..|+.
T Consensus       317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            467  88899999999999999876324445556666666765 799999876654 44444    4555554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.09  E-value=2.7e-05  Score=41.20  Aligned_cols=63  Identities=13%  Similarity=0.144  Sum_probs=44.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCC-----EEEEEEcCCCCEEEEEeCC---------CCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNW-----VKNIEFSSKDNLLVTAGFD---------GSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~   67 (68)
                      .+|++..++++  |+.+.+|+..+ +.....+..+...     ...+.|+|+++.++..+.+         +.+.+||+.
T Consensus        24 w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~  100 (740)
T 4a5s_A           24 WISDHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (740)
T ss_dssp             ECSSSEEEEEE--TTEEEEEETTT-CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ECCCCcEEEEc--CCcEEEEECCC-CceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence            45788878776  89999999987 4444445554422     2347899999988877654         456688875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.07  E-value=7.6e-06  Score=39.81  Aligned_cols=65  Identities=11%  Similarity=0.077  Sum_probs=43.2

Q ss_pred             eeecCcEEEEeeCCC------CEEEeecCCCCcceE---EeccCCCCEEEEEEcC---CCCEEEEEeC-CCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDT------TIALWDARNLKTRVR---TLQGHSNWVKNIEFSS---KDNLLVTAGF-DGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~i~~~~~   66 (68)
                      ++|+++.++++..+.      .+.+|++...+....   ....+......++++|   +++.++.++. ++.+.+|++
T Consensus       262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            678998887776543      799999853133221   1222333445778899   7888877776 489999975

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.06  E-value=1.2e-05  Score=39.31  Aligned_cols=66  Identities=17%  Similarity=0.190  Sum_probs=46.2

Q ss_pred             CeeecCcEEEEeeC----------CCCEEEeecCCCCcceEEeccC------CCCEEEEEEcCCCCEEEEEeC--CCCEE
Q psy11876          1 MIFLDTRVFATCSD----------DTTIALWDARNLKTRVRTLQGH------SNWVKNIEFSSKDNLLVTAGF--DGSIY   62 (68)
Q Consensus         1 ~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~i~   62 (68)
                      +++|+++.++++..          ++.+.+|+..+ ......+...      ......++++|+++.+..+..  ++.+.
T Consensus        56 ~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~  134 (361)
T 2oiz_A           56 QVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIG  134 (361)
T ss_dssp             EECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEE
T ss_pred             EECCCCCEEEEEEecccccccCCCCCEEEEEECcC-CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEE
Confidence            36789999888863          56799999876 3444444321      234567889999988876653  57899


Q ss_pred             EEeCC
Q psy11876         63 TWDIN   67 (68)
Q Consensus        63 ~~~~~   67 (68)
                      +||..
T Consensus       135 v~d~~  139 (361)
T 2oiz_A          135 IVDVA  139 (361)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.03  E-value=6.5e-05  Score=37.57  Aligned_cols=51  Identities=14%  Similarity=0.158  Sum_probs=38.4

Q ss_pred             EEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++..||.+.+|++.. .... .   ....+.+++|+|++  +..+..|+.+.+|+.
T Consensus       139 ~av~~~dG~L~v~dl~~-~~~~-~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~  189 (388)
T 1xip_A          139 LVILNSVNDLSALDLRT-KSTK-Q---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAW  189 (388)
T ss_dssp             EEEEETTSEEEEEETTT-CCEE-E---EEESEEEEEECSSE--EEEEETTSCEEEEEE
T ss_pred             EEEEECCCCEEEEEccC-Cccc-c---ccCCceEEEEcCCc--eEEEEcCCcEEEEcC
Confidence            77788899999999875 2222 1   33468899999988  556778899998864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.02  E-value=0.00013  Score=36.55  Aligned_cols=59  Identities=14%  Similarity=0.119  Sum_probs=43.9

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++.++++ .++.+++|+..... .......+...+..+.+.+.  .++.++.+|.+.+||+.
T Consensus        96 d~~~L~v~-~~~~l~v~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           96 HGDQVLVS-TRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLR  154 (388)
T ss_dssp             ETTEEEEE-ESSEEEEEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETT
T ss_pred             CCCEEEEE-cCCcEEEEEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEcc
Confidence            77888888 78999999987633 33345556666777665443  38888999999999985

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.02  E-value=4.7e-05  Score=40.12  Aligned_cols=57  Identities=9%  Similarity=0.085  Sum_probs=37.0

Q ss_pred             eeecCcEEEEeeCCC-----CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCC
Q psy11876          2 IFLDTRVFATCSDDT-----TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS   60 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (68)
                      ++||++.++.+..++     .+++|++.. +......... ..+..++|+|+++.++.+..++.
T Consensus       132 ~SPDg~~la~~~~~~G~~~~~i~v~d~~t-g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~  193 (710)
T 2xdw_A          132 FSEDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQ  193 (710)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCC
T ss_pred             ECCCCCEEEEEEcCCCCceEEEEEEECCC-CCCCcccccC-cccceEEEEeCCCEEEEEEECCc
Confidence            578998887655443     789999876 3332211111 12457899999988887776654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.00  E-value=4e-05  Score=37.20  Aligned_cols=64  Identities=9%  Similarity=-0.012  Sum_probs=41.0

Q ss_pred             eeecCcEEEEeeCC-C--CEEEeecCCCCcceEEeccCCCCE-EEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD-T--TIALWDARNLKTRVRTLQGHSNWV-KNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.++..... +  .+.+|+... .. ........... ....|+|+++.++....++.+.+|+..
T Consensus        43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           43 FTQDGKKLLFAGDFDGNRNYYLLNLET-QQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTT-TE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred             CCCCCCEEEEEEecCCCceEEEEECCC-Cc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence            57899887665443 3  466667655 22 22333222222 236789999999888888889999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.93  E-value=0.00024  Score=34.22  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=46.4

Q ss_pred             eeecCcEEEEeeCC------------------------CCEEEeecCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEe
Q psy11876          2 IFLDTRVFATCSDD------------------------TTIALWDARNLKTRVRTLQ-GHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         2 ~~~~~~~~~~~~~~------------------------~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      +.++++++++...+                        +.+.+|+..+ ........ .+-.....+++.++++++++..
T Consensus        31 ~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~  109 (329)
T 3fvz_A           31 LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSSGKNLFYLPHGLSIDTDGNYWVTDV  109 (329)
T ss_dssp             ECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEECTTTCSSEEEEEECTTSCEEEEET
T ss_pred             ECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEeccCCCccCCceEEEECCCCCEEEEEC
Confidence            56778877777766                        3688888865 33333332 2334678899999999888888


Q ss_pred             CCCCEEEEeCC
Q psy11876         57 FDGSIYTWDIN   67 (68)
Q Consensus        57 ~~~~i~~~~~~   67 (68)
                      .++.|..|+..
T Consensus       110 ~~~~v~~~~~~  120 (329)
T 3fvz_A          110 ALHQVFKLDPH  120 (329)
T ss_dssp             TTTEEEEECTT
T ss_pred             CCCEEEEEeCC
Confidence            88999999853

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.92  E-value=0.00026  Score=36.98  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=46.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecC--CCCcceEEeccCCCCEEEEEEc----CCCCEEEEE-eCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDAR--NLKTRVRTLQGHSNWVKNIEFS----SKDNLLVTA-GFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.++.+.++|..  + ......+.... ....+.++    |+++++..+ ..++.+.++|..
T Consensus       204 ~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          204 LSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             ECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            67899999999999999999985  4 34444554433 35688899    688766554 456888888854

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.91  E-value=3.9e-05  Score=39.82  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=44.8

Q ss_pred             eeecCcEEEEeeCC----------CCEEEeecCCCC----cceEEec-cCCCCEEEEEEcCCCCEEEEEeCC--------
Q psy11876          2 IFLDTRVFATCSDD----------TTIALWDARNLK----TRVRTLQ-GHSNWVKNIEFSSKDNLLVTAGFD--------   58 (68)
Q Consensus         2 ~~~~~~~~~~~~~~----------~~v~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------   58 (68)
                      ++||++.|+.++.+          ..+.+|+.....    .....+. .+...+...+|+|+++.++..+.+        
T Consensus       137 ~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          137 LLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             EETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred             ECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence            57899988888766          467788876410    2333444 445566778899999888766543        


Q ss_pred             CCEEEEeCC
Q psy11876         59 GSIYTWDIN   67 (68)
Q Consensus        59 ~~i~~~~~~   67 (68)
                      ..|.+||+.
T Consensus       217 ~~i~~~d~~  225 (662)
T 3azo_A          217 TELKTARVT  225 (662)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEEEEEC
Confidence            368888764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.90  E-value=0.00018  Score=34.14  Aligned_cols=59  Identities=10%  Similarity=0.051  Sum_probs=44.0

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCC-CCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHS-NWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .++.+++++.++.+.+|+..+ ...+..+..+. ..++.+.+.|+++.+++  .++.+..+|.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~   63 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR   63 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT
T ss_pred             CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC
Confidence            467899999999999999877 56666665554 35678889999988873  3555666654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.90  E-value=2.9e-05  Score=40.80  Aligned_cols=63  Identities=8%  Similarity=0.063  Sum_probs=42.3

Q ss_pred             eeecCcEEE-----EeeCCCCEEEeecCCCCcceEEeccCCCCE--EEEEEcCCCCEEEEEeCCCC-------------E
Q psy11876          2 IFLDTRVFA-----TCSDDTTIALWDARNLKTRVRTLQGHSNWV--KNIEFSSKDNLLVTAGFDGS-------------I   61 (68)
Q Consensus         2 ~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------------i   61 (68)
                      ++||++.++     .|+.+..+++|++.. +....  ..+...+  ..++|+|+++.++..+.+..             +
T Consensus       128 ~SPDG~~la~~~~~~G~~~~~i~v~dl~t-g~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v  204 (695)
T 2bkl_A          128 VSWDGKKVAFAQKPNAADEAVLHVIDVDS-GEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTI  204 (695)
T ss_dssp             ECTTSSEEEEEEEETTCSCCEEEEEETTT-CCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEE
T ss_pred             ECCCCCEEEEEECCCCCceEEEEEEECCC-CCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEE
Confidence            678998887     444456899999976 33220  1111112  57889999998888877655             8


Q ss_pred             EEEeCC
Q psy11876         62 YTWDIN   67 (68)
Q Consensus        62 ~~~~~~   67 (68)
                      .+|++.
T Consensus       205 ~~~~l~  210 (695)
T 2bkl_A          205 RYHTLG  210 (695)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            888764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.87  E-value=0.00022  Score=33.48  Aligned_cols=64  Identities=6%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ--GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.++++++++...++.+.+|+...  .....+.  .+...+..+++.++++.+++...++.+.+|+..
T Consensus       128 ~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  193 (286)
T 1q7f_A          128 VDNKGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  193 (286)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             EeCCCCEEEEECCCCEEEEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence            346777777666678888888643  3333332  333457899999998888888778899999853

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.86  E-value=0.00028  Score=32.73  Aligned_cols=64  Identities=11%  Similarity=-0.046  Sum_probs=44.0

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+++..+++...++.+..|+... .........+...+..+++.++++++++...++.|.+++..
T Consensus       200 d~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          200 DEAGTVYVTEHNTNQVVKLLAGS-TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             CTTCCEEEEETTTSCEEEECTTC-SCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCCEEEEECCCCcEEEEcCCC-CcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            45666666666677888888754 22221112223457889999998888888889999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.84  E-value=0.00017  Score=34.60  Aligned_cols=52  Identities=17%  Similarity=0.249  Sum_probs=32.7

Q ss_pred             eeecCcEEEEeeCC---CC--EEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy11876          2 IFLDTRVFATCSDD---TT--IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         2 ~~~~~~~~~~~~~~---~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      ++||++.++..+.+   +.  +.+++... .... ....... +..+.|+|+++.++...
T Consensus        66 ~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~-~l~~~~~-~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A           66 ISPDGKKIAFMRANEEKKVSEIWVADLET-LSSK-KILEAKN-IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             ECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEE-EEEEESE-EEEEEECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEEeccCCCcceEEEEECCC-CceE-EEEcCCC-ccceeECCCCCEEEEEE
Confidence            57899888776643   33  55666654 3322 2222233 78899999998777665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.61  E-value=0.0015  Score=34.22  Aligned_cols=60  Identities=23%  Similarity=0.178  Sum_probs=45.9

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..+++...++.+.++|..+ ...+..+... ..++.+.++|+++.+..++.++.+.++|..
T Consensus       167 ~~~~V~~~~~~~V~viD~~t-~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGST-YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTT-CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             ceEEEEeCCCCeEEEEECCC-CeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence            35667777789999999987 4445455433 346789999999988888889999999973

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.59  E-value=0.0011  Score=31.99  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEe---------ccCCCCEEEEEEcC-CCCEEEEEe-CCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTL---------QGHSNWVKNIEFSS-KDNLLVTAG-FDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~-~~~~i~~~~~   66 (68)
                      +.++++++++...++.|..|+.......+..+         ..+......+++.| ++..+++.+ .++.|.+|+.
T Consensus        98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~  173 (329)
T 3fvz_A           98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP  173 (329)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT
T ss_pred             ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC
Confidence            45678877777778889988875421133333         22334578999999 788888886 6889999874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.56  E-value=0.0011  Score=31.32  Aligned_cols=64  Identities=9%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~   67 (68)
                      .+++++.++...++.+..|+..+ ......+..+...+..+++.++++ ++++...++.+..++..
T Consensus       234 d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          234 DEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            45666666666677888888764 233334444446678899999887 55666666788888754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.56  E-value=0.0015  Score=34.65  Aligned_cols=65  Identities=8%  Similarity=0.055  Sum_probs=43.2

Q ss_pred             eeecCcEEEEeeCCCC----------------EEEeecCCCCcc-eEEecc--CCCCEEEEEEcCCCCEEEEEeC-----
Q psy11876          2 IFLDTRVFATCSDDTT----------------IALWDARNLKTR-VRTLQG--HSNWVKNIEFSSKDNLLVTAGF-----   57 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----   57 (68)
                      .+||++.|+.++.+..                +.+|++.+.... ......  +........|+|+++.++....     
T Consensus       178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  257 (710)
T 2xdw_A          178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP  257 (710)
T ss_dssp             ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred             EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence            4678888888777655                888888662211 222332  3445678899999987766543     


Q ss_pred             CCCEEEEeC
Q psy11876         58 DGSIYTWDI   66 (68)
Q Consensus        58 ~~~i~~~~~   66 (68)
                      +..+.+||.
T Consensus       258 ~~~l~~~d~  266 (710)
T 2xdw_A          258 VNRLWYCDL  266 (710)
T ss_dssp             CCEEEEEEG
T ss_pred             ccEEEEEEC
Confidence            457888875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.51  E-value=0.0017  Score=32.22  Aligned_cols=64  Identities=9%  Similarity=0.009  Sum_probs=43.0

Q ss_pred             CeeecCcEEEEee----------CCCCEEEeecCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCCE
Q psy11876          1 MIFLDTRVFATCS----------DDTTIALWDARNLKTRVRTLQGH-------SNWVKNIEFSSKDNLLVTAGF--DGSI   61 (68)
Q Consensus         1 ~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~i   61 (68)
                      +++||++.++.+.          .++.+.+++..+ ......+...       ......+.++|+++.+...+.  +..+
T Consensus        72 ~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v  150 (373)
T 2mad_H           72 VAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV  150 (373)
T ss_pred             EECCCCCEEEEEeccccccccCCCCCeEEEEECCC-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence            3688999888886          356788999876 3333333221       122357889999988776654  4778


Q ss_pred             EEEe
Q psy11876         62 YTWD   65 (68)
Q Consensus        62 ~~~~   65 (68)
                      .++|
T Consensus       151 ~viD  154 (373)
T 2mad_H          151 GLVV  154 (373)
T ss_pred             EEEE
Confidence            8887

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.47  E-value=0.0021  Score=34.06  Aligned_cols=64  Identities=14%  Similarity=0.051  Sum_probs=41.6

Q ss_pred             eeecCcEEEEeeCCCC-------------EEEeecCCCCc-ceEEec--cCCCCEEEEEEcCCCCEEEEEeCCC----CE
Q psy11876          2 IFLDTRVFATCSDDTT-------------IALWDARNLKT-RVRTLQ--GHSNWVKNIEFSSKDNLLVTAGFDG----SI   61 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~i   61 (68)
                      .+||++.|+.++.+..             +++|++.+... ......  .+...+....|+|+++.++..+.++    .+
T Consensus       175 wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l  254 (695)
T 2bkl_A          175 WTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDV  254 (695)
T ss_dssp             ECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred             EecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence            4688888888887765             89999876221 122232  3445677889999987766555443    45


Q ss_pred             EEEe
Q psy11876         62 YTWD   65 (68)
Q Consensus        62 ~~~~   65 (68)
                      .+++
T Consensus       255 ~~~~  258 (695)
T 2bkl_A          255 YWKR  258 (695)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            5554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.46  E-value=0.0017  Score=30.72  Aligned_cols=64  Identities=3%  Similarity=0.011  Sum_probs=41.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcc---eEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTR---VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++...++.+.+|+.......   ...+......+..+++.++++++++.  ++.|.+|+..
T Consensus       179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            4678887776777788999988621222   12222233445678888988877766  7778888753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.45  E-value=0.0015  Score=30.25  Aligned_cols=64  Identities=13%  Similarity=0.049  Sum_probs=42.1

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .++++++++...++.+..|+... .............+..+++.+++.++++...++.+.+|+..
T Consensus       158 ~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          158 DNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             eCCCCEEEEECCCCEEEEEecCC-CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            45666666555567888888764 22221112222556788999988888888778899998754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.44  E-value=0.00042  Score=34.79  Aligned_cols=66  Identities=11%  Similarity=0.111  Sum_probs=44.9

Q ss_pred             eeecCcEEEEee----------CCCCEEEeecCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCCEE
Q psy11876          2 IFLDTRVFATCS----------DDTTIALWDARNLKTRVRTLQGH-------SNWVKNIEFSSKDNLLVTAGF--DGSIY   62 (68)
Q Consensus         2 ~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~i~   62 (68)
                      ++|+++.++.+.          .++.+.+||..+ ......+...       ......+.++|+++.+.....  ++.+.
T Consensus        85 ~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~Vs  163 (386)
T 3sjl_D           85 VADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG  163 (386)
T ss_dssp             ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEE
T ss_pred             ECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEE
Confidence            678998887765          356799999987 4444444321       113457889999987766653  67899


Q ss_pred             EEeCCC
Q psy11876         63 TWDINK   68 (68)
Q Consensus        63 ~~~~~~   68 (68)
                      ++|..+
T Consensus       164 VID~~t  169 (386)
T 3sjl_D          164 VVDLEG  169 (386)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            998753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.42  E-value=0.00039  Score=34.25  Aligned_cols=60  Identities=17%  Similarity=0.184  Sum_probs=36.9

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++..+++++.|+.+..|+..+ +........  ..+.......++..++.++.++.+..||..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT-CCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC---
T ss_pred             eCCEEEEEcCCCEEEEEECCC-CCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC
Confidence            567889999999999999877 444444443  223232333456667777789999999863

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.37  E-value=0.0028  Score=31.45  Aligned_cols=64  Identities=6%  Similarity=-0.031  Sum_probs=42.5

Q ss_pred             eecCcEEEEeeC----------CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEe-CCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSD----------DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAG-FDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~   68 (68)
                      +++++.++.+..          .+.+.+.|..+ ...+..+.. ......+.++++++ .+..+. .++.+.++|..+
T Consensus       275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            455666655443          24688888876 444445543 23468999999987 666666 589999999753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.33  E-value=0.0024  Score=32.16  Aligned_cols=63  Identities=11%  Similarity=-0.000  Sum_probs=44.2

Q ss_pred             eeecCcEEEEeeC-----CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSD-----DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG----------FDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~   66 (68)
                      ..|+++.++....     ++.+.+.|..+ ...+..+.....+ . +.++|+++.+..+.          .++.+.+||.
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            3578888888876     56888999887 4555666555554 4 89999987554443          3567899986


Q ss_pred             C
Q psy11876         67 N   67 (68)
Q Consensus        67 ~   67 (68)
                      .
T Consensus       117 ~  117 (386)
T 3sjl_D          117 V  117 (386)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.19  E-value=0.0044  Score=30.00  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=41.8

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++..+++...++.+.+++..+ ......+. .......++++++++.+++...++.+.++|..
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~  113 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK  113 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT
T ss_pred             CCEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC
Confidence            344555555568899999987 44444553 23456788888887666666578999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.11  E-value=0.0057  Score=29.81  Aligned_cols=52  Identities=17%  Similarity=0.089  Sum_probs=34.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEE--EcCCCCEEEE
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIE--FSSKDNLLVT   54 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   54 (68)
                      ++|+++.|+.++.+..+.+|++.. .........+...+....  .++++..++.
T Consensus        88 ~spdg~~l~~~~~~~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~  141 (388)
T 3pe7_A           88 LSPDDDALFYVKDGRNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVG  141 (388)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCC-CcceeeeechhhcccccceeECCCCCeecc
Confidence            578999999999888999999987 333333333444333333  4777777653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.07  E-value=0.0044  Score=30.15  Aligned_cols=62  Identities=16%  Similarity=0.081  Sum_probs=36.3

Q ss_pred             eeecCcEEEEeeCC-----CCEEEeecCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEe----------------CCC
Q psy11876          2 IFLDTRVFATCSDD-----TTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAG----------------FDG   59 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~~   59 (68)
                      ++|+++.++..+.+     +.+.+|+... .... ....... .. ..|+| +++.++...                .+.
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPET-LENE-EVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEE-EEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCC-CCeE-EeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence            56788766555433     3388888865 2222 1211111 23 78899 888777644                236


Q ss_pred             CEEEEeCC
Q psy11876         60 SIYTWDIN   67 (68)
Q Consensus        60 ~i~~~~~~   67 (68)
                      .+.+||..
T Consensus       321 ~i~~~d~~  328 (396)
T 3c5m_A          321 FLYVLNTK  328 (396)
T ss_dssp             EEEEEETT
T ss_pred             cEEEEecc
Confidence            78888864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.98  E-value=0.0065  Score=29.20  Aligned_cols=57  Identities=14%  Similarity=0.071  Sum_probs=36.2

Q ss_pred             eecCcEEEEeeCC--------CCEEEeecCCCCcceEEeccCCCCEEE-EEEcCCCCEEEEEeCCCCEEEE
Q psy11876          3 FLDTRVFATCSDD--------TTIALWDARNLKTRVRTLQGHSNWVKN-IEFSSKDNLLVTAGFDGSIYTW   64 (68)
Q Consensus         3 ~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~   64 (68)
                      +|+++.++..+.+        ..+.+|+  . .........+...+.. ..|+ ++ .++++..++...+|
T Consensus       223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          223 DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence            6788877666643        2455666  2 3222222334555665 7888 77 88888888888888

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.96  E-value=0.00044  Score=34.40  Aligned_cols=64  Identities=13%  Similarity=-0.006  Sum_probs=43.4

Q ss_pred             eeecCcEEEEee----------CCCCEEEeecCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCCEE
Q psy11876          2 IFLDTRVFATCS----------DDTTIALWDARNLKTRVRTLQGH-------SNWVKNIEFSSKDNLLVTAGF--DGSIY   62 (68)
Q Consensus         2 ~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~i~   62 (68)
                      ++|+++.++.+.          .++.+.++|..+ ......+...       ......+.++|+++++..+..  +..+.
T Consensus        72 ~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~  150 (368)
T 1mda_H           72 AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG  150 (368)
T ss_dssp             ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEE
T ss_pred             ECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEE
Confidence            678888888876          367899999988 4555555322       122467889999877766654  35577


Q ss_pred             E--EeC
Q psy11876         63 T--WDI   66 (68)
Q Consensus        63 ~--~~~   66 (68)
                      +  +|.
T Consensus       151 V~~iD~  156 (368)
T 1mda_H          151 LSVPGA  156 (368)
T ss_dssp             EEETTT
T ss_pred             EEEEch
Confidence            7  665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.94  E-value=0.01  Score=29.73  Aligned_cols=65  Identities=6%  Similarity=-0.112  Sum_probs=42.7

Q ss_pred             eeecCcEEEEeeC---------CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEe-CCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSD---------DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAG-FDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~   68 (68)
                      ++++++.++.+..         +..+.++|..+ ...+..+.... ....+.++++++ .+.+.. .++.+.++|..+
T Consensus       271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            4567766665432         13456899877 34444443322 467899999875 667777 589999999753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.94  E-value=0.01  Score=30.34  Aligned_cols=65  Identities=12%  Similarity=0.156  Sum_probs=43.4

Q ss_pred             eeecCcEEEEeeC----------CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEe-CCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSD----------DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAG-FDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~   68 (68)
                      ++++++.++....          .+.+.+.|..+ ...+..+... .....+.++++++ .+.+.. .++.+.++|..+
T Consensus       326 ~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          326 YHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            3556666655532          24688888877 4444445432 2467889999987 777666 589999999753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.87  E-value=0.0033  Score=33.62  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=33.3

Q ss_pred             eeecCcEEEEeeCC-C----CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDD-T----TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG   59 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (68)
                      ++||++.++.+..+ |    .+++|++.. +.... .......+..++|+|+ +.++....+.
T Consensus       170 ~SPDG~~la~~~~~~G~e~~~i~v~dl~t-g~~~~-~~~~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          170 ASDDGRLLAYSVQDGGSDWRTVKFVGVAD-GKPLA-DELKWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             ECTTSSEEEEEEEETTCSEEEEEEEETTT-CCEEE-EEEEEEESCCCEESTT-SEEEEEECCC
T ss_pred             ECCCCCEEEEEEcCCCCceEEEEEEECCC-CCCCC-ccCCCceeccEEEECC-CEEEEEEecC
Confidence            57899887766543 3    588999876 33222 1111111246789999 8777666544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.77  E-value=0.0016  Score=31.16  Aligned_cols=59  Identities=8%  Similarity=0.205  Sum_probs=36.8

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++..++....++.++.|.    ......+..+...+..++|.++++++++...++.|.+||..
T Consensus        16 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~   74 (333)
T 2dg1_A           16 KSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE   74 (333)
T ss_dssp             GGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred             CccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence            333333334455555552    22233444455566788899988887787778889888764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.74  E-value=0.012  Score=27.96  Aligned_cols=62  Identities=6%  Similarity=0.011  Sum_probs=44.1

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .++++.+++...++.+..|+..  ...+..+... .........++++.+++...++.+..+|..
T Consensus       133 ~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          133 NKKGNYLVPLFATSEVREIAPN--GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT--SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             CCCCCEEEEecCCCEEEEECCC--CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            4578888888888999998875  4445455433 334556677888888888777778877754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.69  E-value=0.013  Score=27.44  Aligned_cols=63  Identities=16%  Similarity=0.026  Sum_probs=39.6

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .++++..++...++.+..|+.. ..............+..+++.+++..+++...++.+..|+.
T Consensus        23 d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           23 SDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence            3456655555546778888765 22222122223456788888888888887766777877764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.67  E-value=0.015  Score=28.14  Aligned_cols=63  Identities=10%  Similarity=0.193  Sum_probs=39.4

Q ss_pred             eeecCcEEEEeeCC----------CCEEEeecCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD----------TTIALWDARNLKTRVRTLQGH-SNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++++++++..+          +.+.+++..+ ......+... ......++++|++..+.....  .+.++|..
T Consensus       179 ~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          179 MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             EcCCCCEEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence            34567766665543          6788888876 3333333321 235688999998776665543  78888764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.64  E-value=0.015  Score=27.68  Aligned_cols=66  Identities=17%  Similarity=0.153  Sum_probs=41.3

Q ss_pred             eeecCcEEE-EeeCCCCEEEeecC-CCCcc-----eEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFA-TCSDDTTIALWDAR-NLKTR-----VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~-~~~~~~~v~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.++ +...++.|..|+.. .....     ...+.........+++.++++++++...++.|..|+..
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            467776554 44456778888763 11211     11122223456788888888888888777888888764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.39  E-value=0.024  Score=27.07  Aligned_cols=62  Identities=11%  Similarity=0.097  Sum_probs=41.6

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ..++++ ++++...++.+..|+... .  ...+......+..+.+.++++++++...++.+..++.
T Consensus        52 ~~~~g~~l~~~d~~~~~i~~~~~~g-~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           52 WWEAQRTLVWSDLVGRRVLGWREDG-T--VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEETTS-C--EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCC-C--EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            356776 567777778888887632 2  2334344556788899999987777655567777764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.29  E-value=0.026  Score=26.39  Aligned_cols=63  Identities=10%  Similarity=-0.121  Sum_probs=39.0

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .++++..++...++.+..++. ...............+..+.+.++++.+++...++.+..++.
T Consensus       191 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          191 GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            345665555545667787877 422211112223456788889888887777666777888775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.29  E-value=0.048  Score=29.41  Aligned_cols=64  Identities=6%  Similarity=-0.007  Sum_probs=38.4

Q ss_pred             eeecCcEEEEeeCCCC--------------EEEeecCCCCc-ceEEecc--CCCCEEEEEEcCCCCEEEEEeCC-----C
Q psy11876          2 IFLDTRVFATCSDDTT--------------IALWDARNLKT-RVRTLQG--HSNWVKNIEFSSKDNLLVTAGFD-----G   59 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~--------------v~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~   59 (68)
                      .+|| +.|+.+..+..              +.+|+..+... .......  +...+....|+|+++.++....+     .
T Consensus       216 wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  294 (741)
T 1yr2_A          216 WLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVN  294 (741)
T ss_dssp             ESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCC
T ss_pred             EECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcc
Confidence            3567 66766665543              77777755221 1223332  22347788999999877655533     3


Q ss_pred             CEEEEeC
Q psy11876         60 SIYTWDI   66 (68)
Q Consensus        60 ~i~~~~~   66 (68)
                      .+.+||.
T Consensus       295 ~l~~~d~  301 (741)
T 1yr2_A          295 TVHVARV  301 (741)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEC
Confidence            6777775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.15  E-value=0.01  Score=31.69  Aligned_cols=53  Identities=23%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             eeecCcEEEE-----eeCCCCEEEeecCCCCcceE-EeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy11876          2 IFLDTRVFAT-----CSDDTTIALWDARNLKTRVR-TLQGHSNWVKNIEFSSKDNLLVTAGFD   58 (68)
Q Consensus         2 ~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (68)
                      ++||++.++-     |+....++++++.+ +.... .....  ....++|+ +++.++....+
T Consensus       136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          136 FSRDGRILAYSLSLAGSDWREIHLMDVES-KQPLETPLKDV--KFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEEEEE--ESCCCEEE-TTTEEEEEESS
T ss_pred             ECCCCCEEEEEEecCCCceEEEEEEECCC-CCCCccccCCc--eeccEEEe-CCCEEEEEEec
Confidence            5788887763     33335688899877 33221 11111  12456788 88877766655

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.05  E-value=0.037  Score=25.90  Aligned_cols=62  Identities=16%  Similarity=0.055  Sum_probs=38.4

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++..++...++.+..++.. ..............+..+.+.+++..+++...++.+..+|.
T Consensus        29 ~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           29 EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK   90 (300)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence            456655555556778888765 22222122223356778888888887777766677777764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.02  E-value=0.069  Score=28.76  Aligned_cols=65  Identities=14%  Similarity=0.212  Sum_probs=44.3

Q ss_pred             eeecCcEE-EEeeCCCCEEEeecCCCC----------cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVF-ATCSDDTTIALWDARNLK----------TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++||++++ +++..+..+.+++..+..          ..+.....-......++|++++..+.+.-.++++..|++
T Consensus       284 ~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          284 MAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             ECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             EcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence            57888755 555566889999987421          011111223345688899999966677888999999985

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.02  E-value=0.052  Score=27.37  Aligned_cols=61  Identities=16%  Similarity=0.260  Sum_probs=37.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC--CEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG--SIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~   65 (68)
                      +.++++++++...++.|+.|+... ......... ..... +++.+++..+.....++  .+..++
T Consensus       138 ~d~~g~lyv~d~~~~~I~~id~~~-g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          138 AVGNNTVLAYQRDDPRVRLISVDD-NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             ECSTTEEEEEETTTTEEEEEETTT-TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred             EeCCCCEEEEecCCCcEEEEECCC-CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence            345677666666668888888865 332222332 22234 88899888777776654  566655

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.90  E-value=0.047  Score=25.84  Aligned_cols=64  Identities=13%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             ecCcEEEEe-eCCCCEEEeecCCCCc-----ceEEeccCC-CCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          4 LDTRVFATC-SDDTTIALWDARNLKT-----RVRTLQGHS-NWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~-~~~~~v~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++.++.+ ..++.+..|+......     ....+..+. .....+++.++++.+++...++.+..|+..
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            666555444 4567888888642121     111222222 446788889999888887778889888864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.69  E-value=0.082  Score=27.16  Aligned_cols=61  Identities=11%  Similarity=-0.012  Sum_probs=40.9

Q ss_pred             ecCcEEEEeeCC-----CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCCEEEEeCC
Q psy11876          4 LDTRVFATCSDD-----TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG----------FDGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~   67 (68)
                      +++..++.....     +.+.++|..+ ...+..+.....+  .+.++|+++.+..+.          .++.+.++|..
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            456666666553     5888999887 4556666555555  789999986554443          35678888864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.54  E-value=0.066  Score=25.03  Aligned_cols=62  Identities=10%  Similarity=-0.061  Sum_probs=37.0

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++..++...++.+..++... .............+..+++.++++++++...++.+..++.
T Consensus        71 ~~g~l~v~~~~~~~v~~~d~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  132 (300)
T 2qc5_A           71 SLGDIWFTENGANKIGKLSKKG-GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA  132 (300)
T ss_dssp             TTSCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CCCCEEEEecCCCeEEEECCCC-CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECC
Confidence            4555555554456677776652 2221222223355778888888888877766677777664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=94.97  E-value=0.042  Score=26.81  Aligned_cols=28  Identities=14%  Similarity=0.074  Sum_probs=22.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876         39 WVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ....+++.++++++++...++.|.+|+.
T Consensus       249 ~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          249 ICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             SCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             CCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            3456788888888888888889999986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=94.81  E-value=0.17  Score=25.60  Aligned_cols=63  Identities=13%  Similarity=0.231  Sum_probs=41.4

Q ss_pred             eeecCcEEEEee-CCCCEEEeecCCCCcceEEeccC---------------CCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCS-DDTTIALWDARNLKTRVRTLQGH---------------SNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      +.++++++++-. .++.|+.|+... .. +..+.++               -.....+++.+++.++++-..++.|+.++
T Consensus       330 ~d~dG~lyvad~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          330 VDEDGNFYIVDGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             ECTTCCEEEEETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             EeCCCCEEEEeCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            456677666655 677888888544 22 2222222               23468899999888888888888888765


Q ss_pred             C
Q psy11876         66 I   66 (68)
Q Consensus        66 ~   66 (68)
                      +
T Consensus       408 ~  408 (409)
T 3hrp_A          408 V  408 (409)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.81  E-value=0.18  Score=27.36  Aligned_cols=51  Identities=14%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876         16 TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.+..||..+ .+..-....+. ......+...+.+++.++.|+.++.||.++
T Consensus       455 g~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~t  505 (689)
T 1yiq_A          455 GKLIAWDPVK-QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADT  505 (689)
T ss_dssp             EEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             eeEEEEECCC-CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCC
Confidence            5577777766 44333333222 122223445667888889999999999763

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=94.79  E-value=0.13  Score=27.78  Aligned_cols=51  Identities=12%  Similarity=0.274  Sum_probs=30.2

Q ss_pred             CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876         16 TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        16 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +.+..||..+ .+..-... +........+...+..++.++.++.+.+||.++
T Consensus       457 g~l~A~D~~t-G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          457 GRLLAWDPVA-QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             EEEEEEETTT-TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cEEEEEeCCC-CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence            4566777766 33333332 222223333445666777788899999998753

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.40  E-value=0.25  Score=25.87  Aligned_cols=65  Identities=17%  Similarity=0.146  Sum_probs=44.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC---c--------ceEEecc------CCCCEEEEEEcCC---CCEEEEEeCCCCE
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK---T--------RVRTLQG------HSNWVKNIEFSSK---DNLLVTAGFDGSI   61 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~--------~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~i   61 (68)
                      ++|+|.++|..+. ..+.+..+....   .        ....+..      ...+|..+.|+|-   +..++....|+.|
T Consensus        73 lSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~I  151 (452)
T 3pbp_A           73 SSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTI  151 (452)
T ss_dssp             ECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCE
T ss_pred             ECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEE
Confidence            5788888888775 467776665211   0        1112221      1457899999994   4588899999999


Q ss_pred             EEEeCC
Q psy11876         62 YTWDIN   67 (68)
Q Consensus        62 ~~~~~~   67 (68)
                      ++||+.
T Consensus       152 r~yDl~  157 (452)
T 3pbp_A          152 TMFDIL  157 (452)
T ss_dssp             EEEETT
T ss_pred             EEEEcc
Confidence            999986

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.09  E-value=0.0049  Score=30.47  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=24.7

Q ss_pred             CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          6 TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +..+++++.++.+..|+..+ +.....+..+.    ....+|.+..+..++.++.+..||.+
T Consensus        92 ~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           92 DGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             ---CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSS
T ss_pred             CCEEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC
Confidence            44566777778888888876 33333332221    12344566667777777888888764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.07  E-value=0.21  Score=23.79  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=33.4

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEc-CCCC-EEEEEe
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS-SKDN-LLVTAG   56 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~   56 (68)
                      .+++++.++...++.|..|+..+ ......+......+.+++|. |++. ++++..
T Consensus       207 d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          207 DAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             BTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            45666666666667788888765 44455555555667888997 6654 444443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=93.76  E-value=0.28  Score=23.99  Aligned_cols=55  Identities=13%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ-GHSNWVKNIEFSSKDNLLVTAGF   57 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   57 (68)
                      +.++++++++...++.|..|+... ........ ........+++.++++++++...
T Consensus       255 ~d~~G~l~va~~~~~~V~~~d~~~-G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          255 IDKDHNIYVGDLAHSAIGVITSAD-RAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             ECTTCCEEEEEGGGTEEEEEETTT-TEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             ECCCCCEEEEccCCCeEEEEECCC-CCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence            345677777777788899998833 22222222 12345678899888887777653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.77  E-value=0.61  Score=25.11  Aligned_cols=64  Identities=8%  Similarity=0.031  Sum_probs=36.4

Q ss_pred             ecCcEEEEeeC-CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CC-----CCEEEEeCC
Q psy11876          4 LDTRVFATCSD-DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FD-----GSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~i~~~~~~   67 (68)
                      .++.+++.|+. +..+.+|+..+..+....-......-+.....++++.++.++ .+     ..+.+||..
T Consensus       252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            56788888874 356888887653221111111122223445556778888777 33     457788764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.53  E-value=0.51  Score=26.86  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=23.8

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876         39 WVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+.++...++...+.+.+.|+++++|++.+
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t  266 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLST  266 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTT
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCC
Confidence            345666667778999999999999998753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=91.75  E-value=0.8  Score=24.18  Aligned_cols=55  Identities=13%  Similarity=0.042  Sum_probs=34.7

Q ss_pred             eeecCcEEEEeeCC-CCEEEeecCCCC--cceEEeccC-C-------------CCEEEEEEcCCCCEEEEEe
Q psy11876          2 IFLDTRVFATCSDD-TTIALWDARNLK--TRVRTLQGH-S-------------NWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-~~v~~~~~~~~~--~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~   56 (68)
                      +++|+++++++... +.|.++++....  ......... .             .....+.++++++.+....
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            67889888777764 788899975322  222222221 0             1246788999987776665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=91.75  E-value=0.59  Score=22.63  Aligned_cols=64  Identities=8%  Similarity=0.094  Sum_probs=38.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCC-----CEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSN-----WVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++..++.+..++.+.+.|..+ ......+.....     ....+.+. ++..++..-.++.+.+-|..
T Consensus       112 lt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          112 LATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK  180 (266)
T ss_dssp             EEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred             EEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence            456776666666678888888876 333434432211     23455665 55566666556777776654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=91.64  E-value=0.74  Score=23.59  Aligned_cols=61  Identities=13%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDI   66 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~   66 (68)
                      ++.++++-..++.|..++... ....... .........++++|+++ ++++-...+.|..+++
T Consensus       237 ~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          237 NGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             TCCEEEEETTTTEEEEEETTT-TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence            344444444456666666654 2211111 11223457889999987 5566666677777653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=91.61  E-value=0.9  Score=24.49  Aligned_cols=63  Identities=17%  Similarity=0.220  Sum_probs=36.3

Q ss_pred             cCcEEEEeeCCC-----------CEEEeecCCCCcce-EEec-cCCCCEEEEEEcCCCCEEEEEeC-CCCEEEEeCC
Q psy11876          5 DTRVFATCSDDT-----------TIALWDARNLKTRV-RTLQ-GHSNWVKNIEFSSKDNLLVTAGF-DGSIYTWDIN   67 (68)
Q Consensus         5 ~~~~~~~~~~~~-----------~v~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   67 (68)
                      ++.+++.|+.+.           .+.+|+..+..... .... .+.......++..++++++.++. +..+.+||..
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~  273 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  273 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCc
Confidence            667777776543           35667776533221 1221 12222334566678888888874 4578888753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=91.58  E-value=0.63  Score=22.62  Aligned_cols=64  Identities=6%  Similarity=-0.051  Sum_probs=38.7

Q ss_pred             eeecCcEEEEe-eCCCCEEEeecC--CCC-c-----ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATC-SDDTTIALWDAR--NLK-T-----RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~-~~~~~v~~~~~~--~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++++.++.+ ..++.+.+|+..  . . .     ....+.........+.+.+++.++++...++.|..|+.
T Consensus       186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          186 FSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            45677665444 445778888875  2 2 1     11112222334567788888887777766677888775

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=91.40  E-value=0.63  Score=22.28  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=19.4

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC------CCEEEEeC
Q psy11876         38 NWVKNIEFSSKDNLLVTAGFD------GSIYTWDI   66 (68)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~   66 (68)
                      .....++++|+++.+......      +.+..|++
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence            345788999998755544433      57777764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.98  E-value=1.5  Score=24.23  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             eeecCcEE-EEeeCCCCEEEeecCCC-----------CcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVF-ATCSDDTTIALWDARNL-----------KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++|||.++ +.+..+..+.+++....           ...+.....-.......+|.+++....+.-.|+++.-|++
T Consensus       330 vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni  406 (638)
T 3sbq_A          330 TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNM  406 (638)
T ss_dssp             ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEec
Confidence            46787654 66777788999988631           0111111122345577889998877788888999999985

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=89.02  E-value=1.2  Score=21.65  Aligned_cols=58  Identities=9%  Similarity=0.149  Sum_probs=32.2

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ....+...++.+.++|..+ ...+..+......-..+  ++++..+..+..++.+.+.|..
T Consensus        77 ~lyv~t~~~~~v~viD~~t-~~v~~~i~~g~~~g~gl--t~Dg~~l~vs~gs~~l~viD~~  134 (266)
T 2iwa_A           77 KLYQVVWLKNIGFIYDRRT-LSNIKNFTHQMKDGWGL--ATDGKILYGSDGTSILYEIDPH  134 (266)
T ss_dssp             EEEEEETTCSEEEEEETTT-TEEEEEEECCSSSCCEE--EECSSSEEEECSSSEEEEECTT
T ss_pred             EEEEEEecCCEEEEEECCC-CcEEEEEECCCCCeEEE--EECCCEEEEECCCCeEEEEECC
Confidence            3444455567888899876 44444553221112333  4455434444467888888864

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.29  E-value=0.58  Score=27.10  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=21.2

Q ss_pred             EEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876         42 NIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++...++...+++.+.|+++++|++.+
T Consensus       242 s~~~~~~~~~lftL~~D~~LRiWsl~t  268 (1139)
T 4fhn_B          242 SMIFLSTYNVLVMLSLDYKLKVLDLST  268 (1139)
T ss_dssp             CCEEETTTTEEEEEBTTCEEEEEETTT
T ss_pred             EeeccCCccEEEEEeCCCEEEEEECCC
Confidence            334455677899999999999999753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=88.01  E-value=2.1  Score=23.47  Aligned_cols=49  Identities=10%  Similarity=0.099  Sum_probs=31.4

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCC-CEEEEEEcCCCCEE
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSN-WVKNIEFSSKDNLL   52 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   52 (68)
                      ...+..++.++.|+.++.||..+ ...+..+..... ...-+.+..+++.+
T Consensus       483 ~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          483 STAGNLVFEGSADGRVIAYAADT-GEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eECCCEEEEECCCCcEEEEECCC-CccceeeeCCCCcccCceEEEECCEEE
Confidence            34567888899999999999988 555555543322 11234455566443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=85.51  E-value=3  Score=22.74  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=36.4

Q ss_pred             cCcEEEEeeCCCC-------------EEEeecCCCCc-ceEEecc---CCCCEEEEEEcCCCCEEEE-EeC---CCCEEE
Q psy11876          5 DTRVFATCSDDTT-------------IALWDARNLKT-RVRTLQG---HSNWVKNIEFSSKDNLLVT-AGF---DGSIYT   63 (68)
Q Consensus         5 ~~~~~~~~~~~~~-------------v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~---~~~i~~   63 (68)
                      |++.|+.++.+..             +++|++.+... .......   +........++|+++.++. ...   .+.+.+
T Consensus       184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred             CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence            6776766665533             77777765221 1223322   2334667889999876643 332   247778


Q ss_pred             EeCC
Q psy11876         64 WDIN   67 (68)
Q Consensus        64 ~~~~   67 (68)
                      +++.
T Consensus       264 ~d~~  267 (693)
T 3iuj_A          264 KDLS  267 (693)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            7753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=85.34  E-value=2.9  Score=22.42  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=14.7

Q ss_pred             CCCEEEEEeCCCCEEEEeCC
Q psy11876         48 KDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        48 ~~~~~~~~~~~~~i~~~~~~   67 (68)
                      .+..+..++.++.+..+|.+
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETT
T ss_pred             CCCEEEEEcCCCeEEEEECC
Confidence            34556667888999998865

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=84.57  E-value=2.4  Score=20.69  Aligned_cols=64  Identities=13%  Similarity=0.184  Sum_probs=34.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCC-----CCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHS-----NWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++..++.+.....+.++|..+ ......+....     ..++-+.+. +++.++..-.+..|.+-|..
T Consensus       132 lt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~  200 (262)
T 3nol_A          132 LTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE  200 (262)
T ss_dssp             EEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred             EecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence            345666676666566777777766 33333333211     122334554 45555555556666666553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=84.48  E-value=2.3  Score=20.46  Aligned_cols=57  Identities=12%  Similarity=-0.008  Sum_probs=32.8

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ........++.+.++|..+ ...+..+.... .-+.++.  ++..+..+..++.+.++|..
T Consensus        76 ~ly~ltw~~~~v~v~D~~t-l~~~~ti~~~~-~Gwglt~--dg~~L~vSdgs~~l~~iDp~  132 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLAT-LTPRARFRYPG-EGWALTS--DDSHLYMSDGTAVIRKLDPD  132 (243)
T ss_dssp             EEEEEESSSSEEEEEETTT-TEEEEEEECSS-CCCEEEE--CSSCEEEECSSSEEEEECTT
T ss_pred             EEEEEEeeCCEEEEEECCc-CcEEEEEeCCC-CceEEee--CCCEEEEECCCCeEEEEeCC
Confidence            3444455667888899877 44455554322 2244443  44434444457889888865

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=84.42  E-value=3.9  Score=23.13  Aligned_cols=21  Identities=14%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             CCCEEEEEeCCCCEEEEeCCC
Q psy11876         48 KDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        48 ~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +...+++.+.|.++++|++.+
T Consensus       230 ~~~fLftL~~Dh~LRiWsL~t  250 (729)
T 3f7f_A          230 HERYLIVLTQNCHLKIWDLTS  250 (729)
T ss_dssp             TTTEEEEEETTCEEEEEETTT
T ss_pred             CCcEEEEEEcCCeEEEEEcCC
Confidence            467899999999999999864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=84.24  E-value=2.5  Score=20.60  Aligned_cols=52  Identities=10%  Similarity=0.137  Sum_probs=29.8

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEc-CCCCEE-EEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS-SKDNLL-VTAGF   57 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~   57 (68)
                      +++++.++...++.+..|+..  ......+......+.++++. +++..+ ++...
T Consensus       239 ~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          239 AEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             TTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCEEEEEeCCCEEEEECCC--CCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            355555555445667777763  33344444445567888887 765544 44433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=81.79  E-value=3.3  Score=20.32  Aligned_cols=64  Identities=8%  Similarity=0.093  Sum_probs=36.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCC-----CEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSN-----WVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +.+++..++.+..++.+.++|..+ ......+.....     .+.-+.|. +++.++..-.+..|.+-|..
T Consensus       141 Lt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~  209 (268)
T 3nok_A          141 LCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA  209 (268)
T ss_dssp             EEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred             EecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence            346677777777677888888776 333433333221     22344554 45555555556666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.1 bits (136), Expect = 3e-12
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
             R+     DD    +WDA     R   L GH N V  +  +     + T  +D  +  W
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

Query: 65  D 65
           +
Sbjct: 340 N 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 5e-07
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 7   RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           R+F + + D +  LWD R      +T  GH + +  I F    N   T   D +   +
Sbjct: 197 RLFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 8e-06
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 25 NLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
           ++TR RTL+GH   +  + + +   LLV+A  DG +  WD   
Sbjct: 44 QMRTR-RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT 86

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 4e-05
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 5   DTRVFATCSDDTTIAL-WDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT 63
           +   FAT SDD T  L     + +    +       + ++ FS    LL+    D +   
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 64  WDINK 68
           WD  K
Sbjct: 297 WDALK 301

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (129), Expect = 3e-11
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
             +   +C+DD T+ +WD +N K  ++TL  H ++V +++F      +VT   D ++  W
Sbjct: 258 GGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

Query: 65  D 65
           +
Sbjct: 317 E 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 3e-09
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
                 + S D TI +WD       + TL GH NWV+ + F S    +++   D ++  W
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

Query: 65  DINK 68
           D   
Sbjct: 275 DYKN 278

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 7e-07
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 20 LWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
           W  R        L GH + V  + F    +++V+A  D +I  WD   
Sbjct: 2  EWIPR--PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET 48

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (76), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           +     + S D TI +W+ +     V+T  GH  WV+ +  +    L+ +   D ++  W
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170

Query: 65  DIN 67
            + 
Sbjct: 171 VVA 173

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (76), Expect = 6e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 5  DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF 45
             V  + S+D TI +WD        RTL+GH++ V++I F
Sbjct: 28 VFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISF 67

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.7 bits (127), Expect = 6e-11
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 5  DTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT 63
          D    A C ++  + +++    K  +V  L+ H+  V  ++++   N +VT G D + Y 
Sbjct: 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 77

Query: 64 WDIN 67
          W + 
Sbjct: 78 WTLK 81

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 7e-11
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
           +  + AT S DT I ++  +     ++ L  H + V N+ + +  + LV++G D  I  W
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRW 284

Query: 65  DI 66
           ++
Sbjct: 285 NV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (80), Expect = 1e-04
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 30 VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
          ++T+ GH+  +  +  +     L++  +DG I  W  + 
Sbjct: 6  LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 40

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.5 bits (69), Expect = 0.004
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 6/56 (10%)

Query: 9  FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
            + S D  I  W + +        Q HSN + +++ S        +  D      
Sbjct: 24 LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 73

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 8e-11
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNI------EFSSKDNLLVTAGFD 58
           +     + S D  +  WD ++    +  LQGH N V ++          + N+  T   D
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 59  GSIYTWDINK 68
                W   K
Sbjct: 378 CKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 4e-06
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 7   RVFATCSDDTTIALWDARN------LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
           +  A  S D  + +WD+        L +   +  GH + V ++ F+     +V+   D S
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277

Query: 61  IYTWDINK 68
           +  W++  
Sbjct: 278 VKLWNLQN 285

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 5e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 5   DTRVFATCSDDTTIALWDARNLK-----------TRVRTLQGHSNWVKNIEFSSKDNLLV 53
           D +   + S D ++ LW+ +N             T   T  GH ++V ++  +  D  ++
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324

Query: 54  TAGFDGSIYTWDINK 68
           +   D  +  WD   
Sbjct: 325 SGSKDRGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.5 bits (72), Expect = 0.002
 Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 13 SDDTTIALWD---ARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
            +    L++    R +   +     H++ V  ++FS+    L T G + +   + ++
Sbjct: 35 QTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVS 91

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-10
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
             + F +   D  +  W      +  ++    S+ V + + S  D  +VT   D     +
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 65  DI 66
           ++
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 1e-04
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 5   DTRVFATCSDDTTIALWDARNL----KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
            TR   T      + +WD  +                N++++ +       L+  G   +
Sbjct: 62  PTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120

Query: 61  IYTWDIN 67
           +  WD+ 
Sbjct: 121 LSIWDLA 127

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 5e-04
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 13 SDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
            D  I     R+ + ++ TL  H   V  +  S+    + T G  G +  WDI+ 
Sbjct: 29 PPDALIGPGIPRHAR-QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH 81

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (70), Expect = 0.004
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 36  HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
           H + V +++F+      V+ G D  +  W    
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-08
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 1   MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS---SKDNLLVTAGF 57
           + +LD++ FAT   D TI +WD       V+        + N +     + +  +++   
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 58  DGSIYTWDI 66
           DG++  +++
Sbjct: 317 DGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 6e-08
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKN-IEFSSKDNLLVTAGFDGSIYT 63
           D    A+ S D TI +W+   LK   +T+   +      +        LV+   +G I  
Sbjct: 249 DGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 64  WDI 66
            + 
Sbjct: 308 VNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 2e-06
 Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 2/63 (3%)

Query: 5  DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
                 C+  +        +L         HS+     + S       +    G++  W
Sbjct: 28 AGDKIQYCNGTSVY-TVPVGSLTD-TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85

Query: 65 DIN 67
          D  
Sbjct: 86 DTT 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 2e-07
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 9   FATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
            AT S D ++ +W+        +     H+    N      +  +V+AG D +I  W++
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 3e-06
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 30 VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
           +   GH+  +  +  S+    L +A  +G I +WDI+ 
Sbjct: 5  DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.7 bits (80), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 20/64 (31%)

Query: 5  DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
          D +   +   +  I  WD     +       H+  +  I+ +SK +L   +  D      
Sbjct: 23 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 82

Query: 65 DINK 68
              
Sbjct: 83 AGGS 86

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 9e-07
 Identities = 8/39 (20%), Positives = 20/39 (51%)

Query: 30 VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
          V+  Q   +++ +I+     +LL+   +DGS+  +  + 
Sbjct: 4  VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI 42

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 1e-04
 Identities = 5/54 (9%), Positives = 16/54 (29%), Gaps = 2/54 (3%)

Query: 5  DTRVFATCSDDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG 56
             +    S D ++ ++          +     + + +    F    +L +  G
Sbjct: 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 1e-04
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
             +   T   D  I+ W+ +  + +++     +     ++ +  DN+L  A  D +  T 
Sbjct: 262 RHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSV-VKIACSDNILCLATSDDTFKTN 319

Query: 65  DI 66
             
Sbjct: 320 AA 321

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-06
 Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 2   IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSI 61
            F  +        +    +++ R+ K     +   ++ + ++ F     L+     DG  
Sbjct: 289 TFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQS 347

Query: 62  YTWDIN 67
           +   ++
Sbjct: 348 FLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 2  IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSI 61
          +  +     T +DD  I ++D+ N K  +  L GH   V  +++ +   +LV+   D ++
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTV 76

Query: 62 YTWDINK 68
            WDI K
Sbjct: 77 RVWDIKK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (77), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 29 RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
          +  TL+GH   V       +DN ++T   D  I  +D   
Sbjct: 4  QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSIN 42

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 4e-06
 Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
               +    +   +  +D +      R +    N + ++  S+    ++    DG IYT+
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKT-----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

Query: 65  DINK 68
            + K
Sbjct: 342 PLEK 345

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 9   FATCSDDTTIALWDARNLK--------TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
             + + D  I +WD               +RTL  HS  V  ++F   +  +V++  D +
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDT 288

Query: 61  IYTWD 65
           I  WD
Sbjct: 289 ILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 5  DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS 46
          D +   +   D TI +WD   L+   R L GH+  V  +++ 
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYD 64

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (71), Expect = 0.002
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 1   MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
           ++  D +   + S D TI +W+    +  VRTL GH   +  +++   D L+V+   D +
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNT 199

Query: 61  IYTWDINK 68
           I  WDI  
Sbjct: 200 IRLWDIEC 207

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 2e-05
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 21 WDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
          W    LK+  + L+GH + V         N +V+   D ++  W   
Sbjct: 1  WRRGELKS-PKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV 45

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 6e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 2  IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS 46
          +        + SDD T+ +W A   K  +RTL GH+  V + +  
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMR 66

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 2e-04
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 7   RVFATCSDDTTIALWDARNLK----TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS-- 60
               T SDD T+ LWD +  +           G    V  I  S+   +      +G+  
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 61  --IYTWDINK 68
             +   D + 
Sbjct: 331 TKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 2e-04
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 1   MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
            +  D     + S DT+I +WD       + TL GH +    +E    DN+LV+   D +
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELK--DNILVSGNADST 238

Query: 61  IYTWDIN 67
           +  WDI 
Sbjct: 239 VKIWDIK 245

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 6e-04
 Identities = 11/66 (16%), Positives = 28/66 (42%)

Query: 2   IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSI 61
           + L   +  + + D+T+ +WD +  +        + +           N ++T+  DG++
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282

Query: 62  YTWDIN 67
             WD+ 
Sbjct: 283 KLWDLK 288

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (69), Expect = 0.004
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 1   MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
            +  D R   + + D  + +WD    +T + TLQGH+N V +++F      +V+   D S
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTS 198

Query: 61  IYTWDIN 67
           I  WD+ 
Sbjct: 199 IRVWDVE 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 3e-05
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 12/79 (15%)

Query: 2  IFLDTRVFATCSDDTTIALWDARNLK-----TRVRTLQGHSNWVKNIEF-------SSKD 49
          +        +CS D  + +WD + L       +  +   H + + +++        + + 
Sbjct: 20 VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79

Query: 50 NLLVTAGFDGSIYTWDINK 68
           L+ T  F G +  + I +
Sbjct: 80 CLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 1e-04
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 7   RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVK----NIEFSSKDNLLVTAGFDGSIY 62
               +   D  +  WD +  K R+ TL  H + ++     +      + L   G     +
Sbjct: 302 ETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 360

Query: 63  TWDINK 68
                +
Sbjct: 361 LKKGWR 366

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.5 bits (81), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 4  LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT 63
          L+     T  D   IAL D    +     L      V     S+    L   G DG +  
Sbjct: 30 LENLFSVTLRDAGQIALIDGSTYEI-KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNM 87

Query: 64 WDIN 67
           D+ 
Sbjct: 88 IDLW 91

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 35.2 bits (79), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 6  TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTW 64
          T  +   S+   I++ D  + K    T+   SN       S     + V       +   
Sbjct: 2  TFAYIANSESDNISVIDVTSNKV-TATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSII 59

Query: 65 DINK 68
          D   
Sbjct: 60 DTAT 63

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 35.1 bits (79), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 2/66 (3%)

Query: 1   MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
            +               +A +D +  K        H      + F  K + L   G    
Sbjct: 257 GLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFND 314

Query: 61  IYTWDI 66
           +  ++ 
Sbjct: 315 LAVFNP 320

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 33.8 bits (76), Expect = 7e-04
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 5  DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
                T  D   IAL D  + K  V+ +      V     S+    L+  G D  I   
Sbjct: 31 PNLFSVTLRDAGQIALVDGDSKK-IVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMI 88

Query: 65 DIN 67
          D+ 
Sbjct: 89 DLW 91

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 32.5 bits (72), Expect = 0.002
 Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 5   DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS--KDNLLVTAGFDGSIY 62
               +   +    + + DA+  + R+   +   + + +I  S   K  L   +  D ++Y
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGE-RLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLY 326

Query: 63  TWDI 66
             D 
Sbjct: 327 IHDA 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 32.1 bits (71), Expect = 0.002
 Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 2/62 (3%)

Query: 7  RVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFS-SKDNLLVTAGFDGSIYTW 64
                +    + + D   +   +V T+            +        T     S+   
Sbjct: 2  DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 65 DI 66
          D+
Sbjct: 62 DL 63

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 31.3 bits (69), Expect = 0.004
 Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 2/67 (2%)

Query: 1   MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGS 60
              ++            +  +D     +  R    H     ++  S+  + +   G  G 
Sbjct: 245 STAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH--SYYSVNVSTDGSTVWLGGALGD 302

Query: 61  IYTWDIN 67
           +  +D  
Sbjct: 303 LAAYDAE 309

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 32.1 bits (71), Expect = 0.002
 Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 2/62 (3%)

Query: 8  VFATCSDDTTIALWD-ARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWD 65
          V+    +   I +W+        +  +      V+ +  S     L V    +  +  + 
Sbjct: 6  VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 66 IN 67
          I 
Sbjct: 66 IA 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.72
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.71
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.67
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.65
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.65
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.65
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.64
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.61
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.6
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.57
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.57
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.56
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.55
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.55
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.5
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.5
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.48
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.48
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.47
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.45
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.45
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.43
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.42
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.41
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.28
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.24
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.22
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.22
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.14
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.13
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.09
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.06
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.06
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.06
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.05
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.77
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.76
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.64
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.62
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.53
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.43
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.3
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.23
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.16
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.98
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.88
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.38
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.22
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.27
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.85
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.53
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	95.21
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.58
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.06
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	92.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	92.11
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	90.14
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	89.02
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	88.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	87.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	84.59

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=9e-17  Score=74.52  Aligned_cols=63  Identities=24%  Similarity=0.428  Sum_probs=58.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++++++.+++|+.|+.+++|+... ......+.+|...|.+++|+|++..+++++.|+.|++||
T Consensus       278 ~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         278 FSKSGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCCEEEEEECCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            567889999999999999999987 667888889999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.3e-17  Score=74.40  Aligned_cols=63  Identities=27%  Similarity=0.662  Sum_probs=57.6

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++|+++.+++++.|+.+++|++.. ..++..+.+|...|.+++|+|+++.+++++.|++|++||
T Consensus       255 ~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         255 FHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECCCCCEEEEEECCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            467889999999999999999987 567778889999999999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1e-15  Score=73.08  Aligned_cols=66  Identities=27%  Similarity=0.604  Sum_probs=54.8

Q ss_pred             eeecCcEEEEeeCCCC---EEEeecCCCCcceEEe-------------ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTT---IALWDARNLKTRVRTL-------------QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++|+++.|++|+.|+.   +++|+... ......+             .+|...|.+++|+|+++++++++.|++|++||
T Consensus       239 ~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            5789999999998874   88999876 3333322             37889999999999999999999999999999


Q ss_pred             CCC
Q psy11876         66 INK   68 (68)
Q Consensus        66 ~~~   68 (68)
                      +.+
T Consensus       318 ~~~  320 (393)
T d1sq9a_         318 VKT  320 (393)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            763

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3e-15  Score=68.01  Aligned_cols=63  Identities=25%  Similarity=0.552  Sum_probs=56.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.|++|+.|+.|++|+..+ ..+...+.+|...|.++++  +++.+++++.|+.+.+|+..
T Consensus        21 ~~~d~~~l~sgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          21 LQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCSSEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EEEcCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            567899999999999999999987 6778888999999988876  56799999999999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3e-15  Score=69.47  Aligned_cols=64  Identities=27%  Similarity=0.487  Sum_probs=57.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++++++|++|+.|+.|++|+..+ ...+..+.+|...|.+++|+++ ..+++++.|+.+++|+..
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTT-TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             EEECCCEEEEEeCCCeEEEEECCC-CcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            567889999999999999999987 6778888999999999999986 478899999999999865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=7.3e-16  Score=73.14  Aligned_cols=66  Identities=23%  Similarity=0.513  Sum_probs=57.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.|++|+..... .....+.+|...|.+++|+|+++++++++.|+.+++||+.
T Consensus        15 ~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_          15 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             ECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            57899999999999999999986522 2455677899999999999999999999999999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=5.2e-16  Score=73.31  Aligned_cols=65  Identities=22%  Similarity=0.363  Sum_probs=57.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEE------cCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF------SSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++++++|+.|+.|++|+..+ ..++..+.+|...|.++++      +|++..+++++.|++|++|+++
T Consensus       316 ~s~~~~~l~sg~~dg~i~vwd~~~-~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         316 TTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            467889999999999999999987 6778888999999988875      4577899999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.5e-14  Score=67.02  Aligned_cols=65  Identities=20%  Similarity=0.488  Sum_probs=58.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++++|++|+.|+.|++|+..+ ......+..|...|.+++|+|++..+++++.++.+.+|+..
T Consensus        63 ~s~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          63 WGTDSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTT-TEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             ECCCCCEEEEEECCCceeeeeccc-ceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            578999999999999999999987 56677788899999999999999999999999999999854

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.8e-14  Score=67.52  Aligned_cols=63  Identities=16%  Similarity=0.237  Sum_probs=54.2

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++|+++.+++++.|+.+++|+... ...+... .|...+.+++|+|+++.+++++.|+.|++||+
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~-~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCC-CCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            568899999999999999999987 4444443 47788999999999999999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.9e-14  Score=66.81  Aligned_cols=65  Identities=17%  Similarity=0.319  Sum_probs=53.3

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC--cc--eEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK--TR--VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++++|++|+ |+.|++|++....  ..  ......|...|.+++|+|+++.+++++.|+.+++||+.
T Consensus        59 fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          59 ISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             ECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             ECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            678999999998 7899999986421  12  22344678889999999999999999999999999975

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.4e-14  Score=64.47  Aligned_cols=63  Identities=24%  Similarity=0.465  Sum_probs=56.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++++.|++|+.|+.|++|+..+ ..+...+.+|...|.++++++  ..+++++.|+.+++|+..
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETT
T ss_pred             EEECCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCCEEEEEeCC--Cccccceecccccccccc
Confidence            567899999999999999999987 677888899999999999976  489999999999999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.56  E-value=8.9e-14  Score=64.94  Aligned_cols=66  Identities=24%  Similarity=0.403  Sum_probs=54.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEe-------ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTL-------QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++|+++.+++++.|+.+++|+... ......+       .+|...|.+++|+|+++.+++++.|+.+++||+++
T Consensus       197 ~~p~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         197 YNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cCcccccccccccccccccccccc-ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            467899999999999999999876 3333322       24678899999999999999999999999999763

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=4.5e-14  Score=64.70  Aligned_cols=62  Identities=26%  Similarity=0.488  Sum_probs=52.7

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .++.++++|+.|+.+++|+++..........+|...|..+.|++++ .+++++.|+.+++|++
T Consensus       225 ~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         225 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            4567899999999999999876455566677899999999999976 5788889999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=4.1e-14  Score=65.16  Aligned_cols=66  Identities=12%  Similarity=0.090  Sum_probs=54.0

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc--ceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT--RVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++++|++|+.|+.|++|++.....  .......|..+|.+++|++. +..+++++.|+.+.+|+..
T Consensus        19 fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_          19 IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             EEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             EeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            688999999999999999999865222  22333468899999999986 5688999999999999875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=3e-13  Score=61.94  Aligned_cols=66  Identities=15%  Similarity=0.276  Sum_probs=53.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCC----------CCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSK----------DNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..|++|+.|+.+++|+.............|...+.+++|+|.          +.++++++.|+.+++|+++
T Consensus       170 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             eccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            57889999999999999999997632223345678888999999864          3578999999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.50  E-value=6.3e-13  Score=62.06  Aligned_cols=65  Identities=20%  Similarity=0.343  Sum_probs=56.9

Q ss_pred             eeecCc-EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTR-VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++. .+++|+.|+.+++|+.+. .........|...+.++.++|+++.+++++.|+.+.+|+.+
T Consensus       154 ~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~  219 (311)
T d1nr0a1         154 FKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  219 (311)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccceeeecccccccccccccccc-cccccccccccccccccccCccccccccccccccccccccc
Confidence            456665 588999999999999987 56677788899999999999999999999999999999875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.48  E-value=3.1e-13  Score=62.14  Aligned_cols=66  Identities=15%  Similarity=0.266  Sum_probs=54.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCc--ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKT--RVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|++..+++++.++.+++|+......  ....+..|...+.+++|+|++..+++++.|+.+++||++
T Consensus       187 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECC
Confidence            467889999999999999999865221  223455688899999999999999999999999999975

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=5.6e-13  Score=63.57  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=49.7

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceE------EeccCCCCEEEEEEcCCCCEEEEEeCCCC---EEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVR------TLQGHSNWVKNIEFSSKDNLLVTAGFDGS---IYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~   67 (68)
                      +|++ .+++|+.|+.+++|+... ..+..      ...+|...|.+++|+|+++.+++++.|+.   +++||++
T Consensus       193 s~dg-~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         193 SERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             CCCC-EEEEEeCCCcEEEEeecc-cccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc
Confidence            4454 889999999999999976 33333      23467889999999999999999998864   8899875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=8.8e-13  Score=60.23  Aligned_cols=65  Identities=32%  Similarity=0.551  Sum_probs=57.9

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++++++|+.|+.|++|++.+ ......+.+|...|.++++++++..++.+..++.+..|+..
T Consensus        25 ~sp~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          25 FHPVFSVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             ECSSSSEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCC-CCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            578899999999999999999987 56777888999999999999999999999999888888653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.5e-12  Score=60.01  Aligned_cols=65  Identities=25%  Similarity=0.410  Sum_probs=52.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEec-----cCCCCEEEEEEcCCCCEEEEEeCCCC----EEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ-----GHSNWVKNIEFSSKDNLLVTAGFDGS----IYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~   67 (68)
                      +.++++.+++|+.|+.|++|++++ ...+..+.     +|...|.+++++|++..+++++.||+    +.+||+.
T Consensus       266 ~~~~~~~~~s~s~Dg~i~iwd~~t-g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         266 LQFNKNFVITSSDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEECSSEEEEEETTSEEEEEETTT-CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             cccCCCeeEEEcCCCEEEEEECCC-CCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            345778999999999999999987 44444432     45667999999999999999998885    9999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=8e-13  Score=62.65  Aligned_cols=65  Identities=9%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCC-cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++|++++|++++.|+.+++|++.... .+......+...+.+++|+|+++.+++++.++.+.+|++
T Consensus        59 fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~  124 (371)
T d1k8kc_          59 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF  124 (371)
T ss_dssp             EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred             ECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeee
Confidence            57899999999999999999987522 234445667888999999999999999999999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=8.3e-13  Score=61.78  Aligned_cols=65  Identities=20%  Similarity=0.343  Sum_probs=51.3

Q ss_pred             eeec-CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEc---CCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLD-TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS---SKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+ +..+++++.|+.+++|+.++ ......+.+|...+....++   +++..+++++.|+.+++||++
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             eccccceeccccccccceeeeeecc-ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence            4565 57899999999999999987 56667777777665443333   567899999999999999976

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.42  E-value=1.6e-12  Score=59.77  Aligned_cols=66  Identities=12%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++++.|+.+.+|++............|...+.+++++|++..+++++.++.+.+||..
T Consensus       144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  209 (299)
T d1nr0a2         144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA  209 (299)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            467889999999999999999876322223345678889999999999999999999999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=5.4e-12  Score=59.49  Aligned_cols=65  Identities=28%  Similarity=0.524  Sum_probs=58.5

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.+++|+.|+.+++|+... ........+|...+..+.+++.+..++.++.++.+.+||.+
T Consensus       129 ~s~~~~~l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         129 FSPDGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ECCCCCcceecccccccccccccc-cccccccccccccccccccccccccccccccceeeeeeecc
Confidence            567899999999999999999987 56677788899999999999999999999999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=8.3e-11  Score=54.37  Aligned_cols=63  Identities=40%  Similarity=0.573  Sum_probs=54.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      +++++..+++++.|+.+++|+... ......+.+|...+.++++++  ..+++++.|+.+++||.+
T Consensus       209 ~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         209 YDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETT
T ss_pred             ccccceeeecccccceEEeeeccc-ccccccccccccccccccccc--ceeeeeeccccccccccc
Confidence            456788999999999999999987 567778888999998988854  689999999999999975

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.24  E-value=8.4e-11  Score=54.45  Aligned_cols=66  Identities=11%  Similarity=0.093  Sum_probs=53.3

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCcceEEec-cCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRTLQ-GHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      ++++++.++++++.++.|.+||..+ .+....+. .+...+..+.++|+++.+ +++..++.+.+||..
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t-~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCC-CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence            4678899999999999999999988 56666554 345556799999998765 566678999999975

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=1e-10  Score=54.63  Aligned_cols=62  Identities=21%  Similarity=0.446  Sum_probs=45.5

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCC--EEEEEEcC-CCCEEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNW--VKNIEFSS-KDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++.|++++.|+.+++|++.. +.++..+..+...  +..+.+.+ .+..+++++.|+.+++||+
T Consensus       261 ~dg~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         261 LDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SSSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCCCEEEEEeCCCeEEEEECCC-CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            6788999999999999999987 5555555544432  33333333 2347889999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.22  E-value=1.7e-10  Score=55.57  Aligned_cols=58  Identities=26%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++++.+.|+.+.+||..+ ...+..+..+. .+..++++|+++.+++++.|+.+++||+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t-~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~   91 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDS-KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLW   91 (426)
T ss_dssp             EEEEETTTTEEEEEETTT-CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             EEEEEcCCCEEEEEECCC-CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEcc
Confidence            567888899999999988 56666776654 58899999999999999999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.14  E-value=8.1e-10  Score=51.41  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             eeecCcEEEEeeCCC--CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDDT--TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++||++.++.++.+.  .+.+|+... + .......+...+..++|+|+++.+++++.++.+.+|+..
T Consensus        50 ~spDg~~l~~~~~~~g~~v~v~d~~~-~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          50 RGGDTKVAFIHGTREGDFLGIYDYRT-G-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             ECSSSEEEEEEEETTEEEEEEEETTT-C-CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ECCCCCEEEEEEcCCCCEEEEEECCC-C-cEEEeeCCCceEEeeeecccccccceecccccccccccc
Confidence            688998887665543  688999876 2 345667788899999999999999999999999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=3.1e-10  Score=52.07  Aligned_cols=64  Identities=27%  Similarity=0.323  Sum_probs=48.1

Q ss_pred             cCcEEEEeeCCCCEEEeecCCCCc-----ceE---------EeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          5 DTRVFATCSDDTTIALWDARNLKT-----RVR---------TLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         5 ~~~~~~~~~~~~~v~~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      ++..+++++.|+.+.+|.......     ...         ....|...+.+++|+|++..+++++.|+.+++||+++
T Consensus       205 ~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence            567889999999999998753110     000         1123455688999999999999999999999999763

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.8e-09  Score=47.60  Aligned_cols=61  Identities=31%  Similarity=0.616  Sum_probs=49.4

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .+++..++++..|+.+++|+... .........+...+..  +.++...+++++.|+.+++||+
T Consensus       185 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         185 QYRDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             EEETTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEH
T ss_pred             cCCCCeEEEecCCCEEEEEeccc-ceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEEC
Confidence            45677899999999999999987 5566677777776654  4557789999999999999985

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.06  E-value=2.5e-09  Score=51.91  Aligned_cols=59  Identities=24%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      -++++.+.++.+.+||..+ ...+..+..+ ..++.++++|+++.+++++.|+.+.+||+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t-~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~   91 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST-YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLW   91 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT-CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             EEEEEEcCCCEEEEEECCC-CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEee
Confidence            3468999999999999988 5666677655 458999999999999999999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.06  E-value=1.1e-09  Score=50.95  Aligned_cols=62  Identities=11%  Similarity=0.065  Sum_probs=47.8

Q ss_pred             eee-cCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC--CCEEEEeCC
Q psy11876          2 IFL-DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD--GSIYTWDIN   67 (68)
Q Consensus         2 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~   67 (68)
                      |+| ||+.++.++. +.+.+|+... +. ... ..|...+..++|+|+++.++.++.+  ..+.+||..
T Consensus        10 fSP~dG~~~a~~~~-g~v~v~d~~~-~~-~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~   74 (360)
T d1k32a3          10 FSPLDGDLIAFVSR-GQAFIQDVSG-TY-VLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR   74 (360)
T ss_dssp             EEECGGGCEEEEET-TEEEEECTTS-SB-EEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred             ccCCCCCEEEEEEC-CeEEEEECCC-Cc-EEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence            688 8999988875 6899999865 33 323 3688889999999999877765544  478999865

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.06  E-value=1.7e-10  Score=55.99  Aligned_cols=67  Identities=10%  Similarity=0.001  Sum_probs=47.5

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCc-ceEEec---cCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKT-RVRTLQ---GHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      +++||++.+++++.|+.+.+|++.+... ....+.   .+...+.+..++|+++.+ +++..++.+.+||..
T Consensus        68 ~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          68 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             EECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc
Confidence            3789999999999999999999876322 122222   222333344567788765 778889999999965

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.05  E-value=2.1e-10  Score=55.25  Aligned_cols=67  Identities=12%  Similarity=0.036  Sum_probs=47.1

Q ss_pred             CeeecCcEEEEeeCCCCEEEeecCCCCc-ceEEec---cCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          1 MIFLDTRVFATCSDDTTIALWDARNLKT-RVRTLQ---GHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      +++|||+.+++++.|+.+++|++.+... ....+.   .+...+.+..|+|+++.+ +++..++.+.+||..
T Consensus        68 afSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~  139 (426)
T d1hzua2          68 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  139 (426)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCC
Confidence            3789999999999999999999987321 122222   233334455677888765 555678999999865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.94  E-value=8.1e-09  Score=47.57  Aligned_cols=61  Identities=7%  Similarity=-0.021  Sum_probs=47.3

Q ss_pred             cEEEEeeCCCCEEEeecCCCCcceEEecc--CCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKTRVRTLQG--HSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDINK   68 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~   68 (68)
                      .++++++.|+.|.+||..+ ......+..  +...+..++++|+++.+ ++++.++.+.+||..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s-~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEEcCCCEEEEEECCC-CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            4689999999999999987 455555543  33456789999998866 5777889999999753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.77  E-value=9.6e-08  Score=43.92  Aligned_cols=62  Identities=8%  Similarity=0.111  Sum_probs=46.5

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .+++..++.+  ++.+.+|+..+ ........ +...+.+++++|+++.+..++.++.+.+||..+
T Consensus       249 ~~~~~~~~~~--~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         249 NPAKTRAFGA--YNVLESFDLEK-NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             CTTSSEEEEE--ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             cccceEEEEc--cccEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            3455556555  46899999987 44444443 455678999999999999999999999999753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.76  E-value=1.7e-07  Score=42.61  Aligned_cols=65  Identities=9%  Similarity=0.042  Sum_probs=45.7

Q ss_pred             eeecCcEEEEeeC---CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCCC
Q psy11876          2 IFLDTRVFATCSD---DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDINK   68 (68)
Q Consensus         2 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~   68 (68)
                      +++++..++.+..   ++.+.+|+..+ ......+.. ...+..++++|+++.+ +++..++.|.+||..+
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGT-NKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTT-TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccccccccccccccceeeeeeeeecCC-CeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            4566666655433   35799999987 444444443 3457899999998765 6778899999999753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.64  E-value=4.5e-07  Score=41.16  Aligned_cols=58  Identities=12%  Similarity=0.133  Sum_probs=43.7

Q ss_pred             EEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCCC
Q psy11876          9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDINK   68 (68)
Q Consensus         9 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~   68 (68)
                      +++...++.|.+||..+ .+....+... ..+..++++|+++++ +++..++.+.+||..+
T Consensus         5 yV~~~~~~~v~v~D~~t-~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t   63 (301)
T d1l0qa2           5 YIANSESDNISVIDVTS-NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT   63 (301)
T ss_dssp             EEEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEECCCCEEEEEECCC-CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            35567789999999987 4555555433 446789999998866 5777889999999753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=8e-08  Score=44.28  Aligned_cols=61  Identities=11%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             cEEEEeeCCCCEEEeecCCCCc-ceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCCEEEEeCC
Q psy11876          7 RVFATCSDDTTIALWDARNLKT-RVRTLQGHSNWVKNIEFSSKDNLLV-TAGFDGSIYTWDIN   67 (68)
Q Consensus         7 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~   67 (68)
                      ..+++++.++.|++|++..... .......+...+..++++|+++.+. ++..++.+.+|++.
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~   67 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA   67 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence            3457778899999999875322 2223335667788999999998774 55557999999764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.62  E-value=1e-07  Score=44.01  Aligned_cols=62  Identities=10%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      +++..++.... +.+.+|+... ........ +...+..++++|+++.+..++.++.|.+||.++
T Consensus       261 ~~~~~~~~~~~-~~v~v~d~~~-~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         261 PKDPNQIYGVL-NRLAKYDLKQ-RKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             SSCTTEEEEEE-SEEEEEETTT-TEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             CCCCEEEEecC-CeEEEEECCC-CcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            44444444443 5689999876 44444443 344578999999999999999999999999864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.53  E-value=2.2e-06  Score=40.13  Aligned_cols=59  Identities=7%  Similarity=0.041  Sum_probs=42.2

Q ss_pred             EEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC--EEEEEeCCCCEEEEeCCC
Q psy11876          8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         8 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~   68 (68)
                      .++....++.+.+|+..+ ......+. +...+..+.++|+++  ++++.+.++++.+||..+
T Consensus       290 ~~~~~~~~~~v~~~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLV-GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             eEEeecCCCeEEEEECCC-CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            344555667788888876 44444443 456678899999986  456888999999999763

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=2.2e-06  Score=39.37  Aligned_cols=65  Identities=6%  Similarity=0.090  Sum_probs=43.6

Q ss_pred             CeeecCcEEEEee-CCCCEEEeecCCCCcc--eEEeccCCCCEEEEEEcCCCCEEEEEeC-CCCEEEEe
Q psy11876          1 MIFLDTRVFATCS-DDTTIALWDARNLKTR--VRTLQGHSNWVKNIEFSSKDNLLVTAGF-DGSIYTWD   65 (68)
Q Consensus         1 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~   65 (68)
                      +++||++.|+++. .++.+.+|++......  ..........+..++++|+++.++.++. ++.+.+|+
T Consensus        43 a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          43 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence            3789998885554 5799999998753222  1122233444578999999988877765 56777775

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.30  E-value=5e-06  Score=38.60  Aligned_cols=50  Identities=18%  Similarity=0.332  Sum_probs=35.1

Q ss_pred             CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC--EEEEEeCCCCEEEEeCCC
Q psy11876         17 TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIYTWDINK   68 (68)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~   68 (68)
                      .+.+|+..+ ......+. ....+..++++|+++  +++++..++.|.+||.++
T Consensus       281 ~v~v~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         281 FVVVLDAKT-GERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             EEEEEETTT-CCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEeCCC-CcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence            577888876 34444443 234467899999886  456777889999999763

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.23  E-value=5e-06  Score=38.59  Aligned_cols=63  Identities=13%  Similarity=0.035  Sum_probs=43.6

Q ss_pred             eeecCcEEEEee-----CCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE----------eCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCS-----DDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA----------GFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~   66 (68)
                      .+||++.++...     ....+.+||..+ ...+.....+..  ..++|+|+++.+...          ..++.+.+||.
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~t-g~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCC-CcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            468888877653     344688999887 555556654443  368999998766543          34678999987


Q ss_pred             C
Q psy11876         67 N   67 (68)
Q Consensus        67 ~   67 (68)
                      .
T Consensus        86 ~   86 (355)
T d2bbkh_          86 V   86 (355)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.16  E-value=3.1e-05  Score=36.22  Aligned_cols=64  Identities=13%  Similarity=-0.083  Sum_probs=43.5

Q ss_pred             CeeecCcEEEEee-----CCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCCEEEEe
Q psy11876          1 MIFLDTRVFATCS-----DDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG----------FDGSIYTWD   65 (68)
Q Consensus         1 ~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~   65 (68)
                      +++|+++.++...     ..+.+.+||..+ .+.+..+..+..  ..+.|+|+++.+....          .++.+.+||
T Consensus        27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~t-g~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D  103 (373)
T d2madh_          27 APGADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             ccCCCCCEEEEEcccccCCCceEEEEECCC-CCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence            3578888776542     234688888877 455555554443  3688999998877664          346789998


Q ss_pred             CC
Q psy11876         66 IN   67 (68)
Q Consensus        66 ~~   67 (68)
                      ..
T Consensus       104 ~~  105 (373)
T d2madh_         104 PV  105 (373)
T ss_pred             CC
Confidence            75

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.98  E-value=1.3e-05  Score=38.92  Aligned_cols=63  Identities=14%  Similarity=0.110  Sum_probs=45.5

Q ss_pred             eeecCcEEEEeeC---------CCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSD---------DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   67 (68)
                      ++||++.|+.++.         ++.+.+|++.. +. ......+...+....|+|+++.++... +..+.+|+..
T Consensus        69 ~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~  140 (470)
T d2bgra1          69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEP  140 (470)
T ss_dssp             ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ECCCCCEEEEEECCcceeeeccCceEEEEECCC-Cc-ccccccCCccccccccccCcceeeEee-cccceEEECC
Confidence            6899998887753         34567888876 32 334566777888999999998887754 5667777643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.88  E-value=1.8e-05  Score=37.26  Aligned_cols=65  Identities=11%  Similarity=-0.018  Sum_probs=43.1

Q ss_pred             eeecCcEEEEee----------CCCCEEEeecCCCCcceEEeccCC-------CCEEEEEEcCCCCEEEEEe-CCCCEEE
Q psy11876          2 IFLDTRVFATCS----------DDTTIALWDARNLKTRVRTLQGHS-------NWVKNIEFSSKDNLLVTAG-FDGSIYT   63 (68)
Q Consensus         2 ~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~i~~   63 (68)
                      ++|+++.++..+          .++.|.+||..+ ..+...+..+.       .....+.|+|+++.++.+. .++.+.+
T Consensus        72 ~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~  150 (368)
T d1mdah_          72 AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG  150 (368)
T ss_dssp             ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEE
T ss_pred             ECCCCCEEEEEcccCccccccccCCeEEEEECCC-CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEE
Confidence            578888777654          356799999877 44443332211       1224678999997776554 5689999


Q ss_pred             EeCC
Q psy11876         64 WDIN   67 (68)
Q Consensus        64 ~~~~   67 (68)
                      ||..
T Consensus       151 ~d~~  154 (368)
T d1mdah_         151 LSVP  154 (368)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            9864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.69  E-value=0.00013  Score=34.32  Aligned_cols=49  Identities=6%  Similarity=-0.046  Sum_probs=33.3

Q ss_pred             CEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC--EEEEEeCCCCEEEEeCC
Q psy11876         17 TIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIYTWDIN   67 (68)
Q Consensus        17 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~   67 (68)
                      .+.+|+..+ ......+. ....+..+.++|+++  .+++...++.+.+||..
T Consensus       295 ~v~v~D~~t-~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         295 NTSSVTASV-GQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEEESSS-CCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eEEEEECCC-CcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            367788776 33333332 334567889999975  35677778999999975

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.38  E-value=0.0011  Score=30.60  Aligned_cols=61  Identities=18%  Similarity=0.121  Sum_probs=42.4

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      +.+|++++++...++.|..++...  . ...+......+..+++.++++++++...++.+..++
T Consensus        35 v~pdG~l~vt~~~~~~I~~i~p~g--~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          35 SAPDGTIFVTNHEVGEIVSITPDG--N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTC--C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEeCCCCEEEEEeCCC--C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence            567888888877777766665432  2 333444556778999999999888877776666554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.22  E-value=0.0023  Score=31.04  Aligned_cols=61  Identities=13%  Similarity=0.190  Sum_probs=40.3

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEec-----cCCCCEEEEEEcCCCCEEEEEeC---------CCCEEEEeCC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQ-----GHSNWVKNIEFSSKDNLLVTAGF---------DGSIYTWDIN   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~   67 (68)
                      +++.+++.  .++.+.+|+..+. .....+.     .+...+....|+|+++.++..+.         ++.+.+||+.
T Consensus        26 ~d~~~~~~--~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~  100 (470)
T d2bgra1          26 SDHEYLYK--QENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (470)
T ss_dssp             SSSEEEEE--SSSCEEEEETTTC-CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             CCCEEEEE--cCCcEEEEECCCC-CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence            35555553  4678999999873 3333332     23456889999999998876642         4567788865

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.05  E-value=0.002  Score=31.89  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=45.2

Q ss_pred             eeecCcEE-EEeeCCCCEEEeecCCCC----------cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVF-ATCSDDTTIALWDARNLK----------TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++||++.+ +++..++.+.+|++.+..          ..+.............+|.+++..+.+...|+++..|++
T Consensus       265 vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             ECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            57888865 678888999999975311          111111122233456688999988899999999999985

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.27  E-value=0.015  Score=27.13  Aligned_cols=62  Identities=10%  Similarity=0.217  Sum_probs=41.3

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCCEEEEeC
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN-LLVTAGFDGSIYTWDI   66 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~   66 (68)
                      .+++..++....+.|.+++... ......+........+++|.++++ ++++....+.|.-.+.
T Consensus       235 ~~GnlyVa~~~~g~I~~~dp~~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         235 EDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             cCCcEEEEEcCCCEEEEEeCCC-CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            4566666666667788887765 334444444445678899998875 6677777787776664

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.85  E-value=0.021  Score=25.36  Aligned_cols=52  Identities=10%  Similarity=0.100  Sum_probs=35.7

Q ss_pred             Ceeec--CcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy11876          1 MIFLD--TRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA   55 (68)
Q Consensus         1 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (68)
                      .++|+  |..++-.+. +.+.+.++.. .. ...+..+........|+|+++.++-.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~-g~-~~~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKS-GS-TRKIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTT-CC-EEEEECSSSEEEEEEECTTSSEEEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCC-CC-EEEEecCCCcccCEEECCCCCEEEEE
Confidence            36888  888776654 5677777765 33 34555566667788999999877644

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.53  E-value=0.0069  Score=29.99  Aligned_cols=62  Identities=6%  Similarity=0.015  Sum_probs=39.4

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      .++++.+..+. ++.+.++.... ......+..... .+.+.++|+++++ +++..++++.+||+.
T Consensus       226 ~~dGk~~~v~~-~~v~vvd~~~~-~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         226 VKAGNFKTIGD-SKVPVVDGRGE-SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             HHTTCCBCCTT-CCCCEEECSSS-CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             ecCCCEEEeCC-CCcEEEEcccC-CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence            34565554443 34555555443 334445554444 4788999999865 566778999999974

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.35  E-value=0.038  Score=24.84  Aligned_cols=62  Identities=13%  Similarity=0.034  Sum_probs=38.2

Q ss_pred             eecCcEEEEeeCCCCEEEeecCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          3 FLDTRVFATCSDDTTIALWDARNLKTRVRTL-QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      .++++.+++...++.+..++.... . .... ...-.....+++.+++.++++....+.+..++.
T Consensus       148 ~~~g~~~v~~~~~~~i~~~d~~~~-~-~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         148 DNSGNVYVTDTDNNRVVKLEAESN-N-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTC-C-EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             cCCCCEeeeccccccccccccccc-e-eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence            456666666666666776666542 1 2222 233345678888888888888777777776653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=95.21  E-value=0.053  Score=25.71  Aligned_cols=66  Identities=6%  Similarity=-0.009  Sum_probs=41.5

Q ss_pred             eeecCcEEEEeeCC-CCEEEeecCCCCcce--EEe--ccCCCCEEEEEEcCCCCEE-EEEeCCCCEEEEeCC
Q psy11876          2 IFLDTRVFATCSDD-TTIALWDARNLKTRV--RTL--QGHSNWVKNIEFSSKDNLL-VTAGFDGSIYTWDIN   67 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~   67 (68)
                      ++|+++.++++... ..+.+++........  ...  .........+.++|+++++ ++.-.++++.+|++.
T Consensus       152 ~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         152 FDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            67899888777653 456777654422211  111  1223456789999998766 455567888888753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.066  Score=23.70  Aligned_cols=64  Identities=3%  Similarity=-0.019  Sum_probs=33.3

Q ss_pred             eeecCcEEEEee-CCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---CCCEEEEeC
Q psy11876          2 IFLDTRVFATCS-DDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGF---DGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~   66 (68)
                      .+|++..++..+ .++...++....... ...............|+|+++.++-.+.   ...+.++++
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATG-GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTC-CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             cccccceeEEEeecCCceeeeEeecccc-cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            356666554444 344445554433122 2233334444567789999987754332   234556654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.19  E-value=0.092  Score=23.81  Aligned_cols=63  Identities=5%  Similarity=0.182  Sum_probs=37.5

Q ss_pred             eecCcEEEEeeC-CCCEEEeecCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCCEEEEeCCC
Q psy11876          3 FLDTRVFATCSD-DTTIALWDARNLKTRVRTLQG--HSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK   68 (68)
Q Consensus         3 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (68)
                      .++++.+++-.. +..+.+++..  ......+..  .......+++.+++.++++. .+..+++|.+.+
T Consensus       208 D~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~-~n~~v~~fr~~~  273 (279)
T d1q7fa_         208 NSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQCFDVALMDDGSVVLAS-KDYRLYIYRYVQ  273 (279)
T ss_dssp             CTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSCEEEEEEETTTEEEEEE-TTTEEEEEECSC
T ss_pred             ccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEe-CCCeEEEEEeee
Confidence            356665554333 3346676643  333333322  22346788899998766654 688899998753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.10  E-value=0.17  Score=23.21  Aligned_cols=65  Identities=18%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTL--QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      +.++++++++...++.+..++...........  .........+.+.++++.+++...++.+..++.
T Consensus        75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~  141 (302)
T d2p4oa1          75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV  141 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             EcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeec
Confidence            46788888877777777766654311112222  223345678888888888777766666665553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.15  Score=22.54  Aligned_cols=55  Identities=18%  Similarity=0.009  Sum_probs=32.1

Q ss_pred             eeecCcEEEEeeCC-CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy11876          2 IFLDTRVFATCSDD-TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         2 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      .+|||+.|+-.... +...+|..............+........|+|++..++...
T Consensus        46 wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~  101 (269)
T d2hqsa1          46 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFAL  101 (269)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEee
Confidence            57898887654433 33233333221233344555666677888999987776544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=92.29  E-value=0.25  Score=23.37  Aligned_cols=65  Identities=9%  Similarity=0.105  Sum_probs=37.2

Q ss_pred             eeecCcEEEEeeCC------CCEEEeecCCCCcceEE---e--ccCCCCEEEEEEcC-CCCEEEEE-eCCCCEEEEeC
Q psy11876          2 IFLDTRVFATCSDD------TTIALWDARNLKTRVRT---L--QGHSNWVKNIEFSS-KDNLLVTA-GFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~~~~~   66 (68)
                      ++|++++++++.+.      ..+..++..........   .  .........++++| +++++..+ ..++.|.+|+.
T Consensus       262 ~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            57888888776532      22666666542211111   1  11223346788888 67766544 56789999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.11  E-value=0.22  Score=22.27  Aligned_cols=60  Identities=12%  Similarity=0.049  Sum_probs=33.4

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCCEEEEe
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQ-GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD   65 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   65 (68)
                      ++++++++...++.+..++... . ...... ..-.....+++.+++.++++-..+++|+..+
T Consensus       191 ~~g~l~vsd~~~~~i~~~~~~~-~-~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         191 EAGTVYVTEHNTNQVVKLLAGS-T-TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             TTCCEEEEETTTTEEEEECTTC-S-CCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eeeeeeeeecCCCEEEEEeCCC-C-eEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            4555555555555555554432 1 111221 2223457888988888887766667666554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.14  E-value=0.44  Score=22.10  Aligned_cols=52  Identities=15%  Similarity=0.090  Sum_probs=29.9

Q ss_pred             ecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy11876          4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG   56 (68)
Q Consensus         4 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (68)
                      +++++.++-..++.|..++... ................+++.++++++++..
T Consensus        49 ~~G~Ly~~D~~~g~I~ri~p~g-~~~~~~~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFKINPET-KEIKRPFVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             TTSCEEEEETTTCEEEEECTTT-CCEEEEEECSSSSEEEEEECTTSCEEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEECCC-CeEEEEEeCCCCCeeEEEECCCCCEEEEec
Confidence            4566555544555555555443 222333334445667888999888777653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.69  Score=22.81  Aligned_cols=55  Identities=9%  Similarity=-0.094  Sum_probs=30.7

Q ss_pred             eeecCcEEEEeeCCCCEEEeecCCCCcceEEeccCCCC-----------------EEEEEEcCCCCEEEEEeC
Q psy11876          2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNW-----------------VKNIEFSSKDNLLVTAGF   57 (68)
Q Consensus         2 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~   57 (68)
                      ++|||+.++-.. ++.+.+.+.........+..+....                 -..+-|+|+++.++....
T Consensus       121 wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         121 WGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             BCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             eccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            578988777665 4566666554321111122221111                 146679999988876654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.73  E-value=0.54  Score=21.23  Aligned_cols=30  Identities=3%  Similarity=0.227  Sum_probs=20.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876         37 SNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ......++..++++.+++....+.+.+++.
T Consensus       156 ~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~  185 (279)
T d1q7fa_         156 LEFPNGVVVNDKQEIFISDNRAHCVKVFNY  185 (279)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEET
T ss_pred             ccccceeeeccceeEEeeeccccceeeeec
Confidence            344566777777777777777777777764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=87.60  E-value=0.74  Score=21.48  Aligned_cols=65  Identities=9%  Similarity=-0.029  Sum_probs=36.0

Q ss_pred             eecCcEEEEeeCC-CCEEEeecCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC------CCEEEEeCC
Q psy11876          3 FLDTRVFATCSDD-TTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD------GSIYTWDIN   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~   67 (68)
                      .+++.+++.|+.+ ..+.+|+..+..............-+..+..++++.++.++..      ..+.+||..
T Consensus        84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            3467777777655 5777888765322111111112223455666777777777642      346677754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.59  E-value=1.1  Score=20.71  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=39.3

Q ss_pred             eeecCcEE-EEeeCCCCEEEeecCCCCcceE-------EeccCCCCEEEEEEcCCCCEEEEEeCCCCEEEEeC
Q psy11876          2 IFLDTRVF-ATCSDDTTIALWDARNLKTRVR-------TLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI   66 (68)
Q Consensus         2 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   66 (68)
                      ++++++.+ ++-...+.|..+++........       ...........+++..+++++++....+.|.+++.
T Consensus       184 ~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            45677655 4444557777777654221111       11111223457888888888888888888888874