Psyllid ID: psy11902

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
TCWSLELPTRHRTEDPPDFKRRRPTPTVKVESDNANANFTFPQNPLPLCSMASSSSVAPTRPGRRLYGKRLSNITAQNSASISYSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEESVLPDKEFLQQ
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccEEEcccEEEEEEEcccccccccHHcccccccccccccccccccccccccccccEEEEEEEEEEEcccccEEEEccEEEccEEcccccccccEEEEcccccccccccEEEEcccccccccccccccccccccccccccccEEEEEEEccccccEEEEEEcccccccc
cccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEEccccccEEccccccccEEEEEcccccEEEEEEEEccccccccccEEEEEEEccccccccEEEEEcccEEEEEEcccccccEEEEEcHHHHHcccccEEEEccccccccccccccEEEEEEEEEcccccccEEEEEEEccccEEccccccccHEEccccccccccccHHHHEEccccccEccccccccEEEEEccccccccEEEEEEEccccccEEEEEEEcHHHHcc
tcwslelptrhrtedppdfkrrrptptvkvesdnananftfpqnplplcsmassssvaptrpgrrlygkrlsnitaqnsasisysvrdpsvyleitsqpeQQHRARYqtegsrgavkdksgngfpvvklvgyngpatlevfigtdqgkiapHMFYQACRvagknstpclekktdgtviididfdpskdmsvtcdCVGILkernvdveqrfpedssaknkkrstRCRMVFRTtiihpgtreTEVLQVAshpimcnqppgvpeickksltscpvtggaelfkvsptdtiagkgllqdhpdailgknfLKDTQVKFQKMVADICQWeesvlpdkEFLQQ
tcwslelptrhrtedppdfkrrrptptvkvesdnananFTFPQNPLPLCSMASSSSVAPTRPGRRLYGKrlsnitaqnsasisysvRDPSVYLEitsqpeqqhRARYQtegsrgavkdksgnGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKnstpclekktdgTVIIDidfdpskdmsVTCDCVGILKernvdveqrfpedssaknkkrstrcrmvfrttiihpgtreTEVLQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEesvlpdkeflqq
TCWSLELPTRHRTEDPPDFKRRRPTPTVKVESDNANANFTFPQNPLPLCSMASSSSVAPTRPGRRLYGKRLSNITAQNSASISYSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEESVLPDKEFLQQ
**************************************************************************************************************************GFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNV*******************RCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEESVL********
TCWS************************************************************************************PSVYLEITSQPEQQH*********************PVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCV***********************KRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEESVLPD***L**
TCWSLELPTRHRTEDPPDFKRRRPTPTVKVESDNANANFTFPQNPLPLCSM*********RPGRRLYGKRLSNITAQNSASISYSVRDPSVYLEITS********************DKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQ**************TRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEESVLPDKEFLQQ
TCWSLELPT****************************N****QN*********SSSV************************ISY*VRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEESVLPDKEFL*Q
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TCWSLELPTRHRTEDPPDFKRRRPTPTVKVESDNANANFTFPQNPLPLCSMASSSSVAPTRPGRRLYGKRLSNITAQNSASISYSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEESVLPDKEFLQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
O94916 1531 Nuclear factor of activat yes N/A 0.681 0.149 0.486 2e-63
Q9WV30 1225 Nuclear factor of activat no N/A 0.672 0.184 0.488 3e-63
Q60591 927 Nuclear factor of activat no N/A 0.720 0.261 0.357 2e-34
O88942717 Nuclear factor of activat no N/A 0.642 0.301 0.395 4e-34
O77638 822 Nuclear factor of activat no N/A 0.616 0.251 0.405 8e-34
Q12968 1075 Nuclear factor of activat no N/A 0.616 0.192 0.399 1e-33
Q8K120 901 Nuclear factor of activat no N/A 0.619 0.230 0.393 1e-33
Q14934 902 Nuclear factor of activat no N/A 0.619 0.230 0.397 2e-33
O95644 943 Nuclear factor of activat no N/A 0.642 0.229 0.387 5e-33
Q13469 925 Nuclear factor of activat no N/A 0.720 0.261 0.350 6e-33
>sp|O94916|NFAT5_HUMAN Nuclear factor of activated T-cells 5 OS=Homo sapiens GN=NFAT5 PE=1 SV=1 Back     alignment and function desciption
 Score =  243 bits (620), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 154/253 (60%), Gaps = 24/253 (9%)

Query: 84  YSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIG 143
           Y V+     L+I  QPE QHRARY TEGSRG+VKD++  GFP VKL G+N P  L+VF+G
Sbjct: 273 YPVKSEGKELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVG 332

Query: 144 TDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERN 203
            D G++ PH FYQACRV G+N+TPC E   +GT +I++  DPS +M++  DCVGILK RN
Sbjct: 333 NDSGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRN 392

Query: 204 VDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEIC 263
            DVE R      A +KK+STR R+VFR  I+      T  LQ  S PI+C QP GVPEI 
Sbjct: 393 ADVEARI---GIAGSKKKSTRARLVFRVNIMR-KDGSTLTLQTPSSPILCTQPAGVPEIL 448

Query: 264 KKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQW 323
           KKSL SC V G  E+F                    ++GKNFLK T+V FQ+ V+D   W
Sbjct: 449 KKSLHSCSVKGEEEVF--------------------LIGKNFLKGTKVIFQENVSDENSW 488

Query: 324 EESVLPDKEFLQQ 336
           +     D E   Q
Sbjct: 489 KSEAEIDMELFHQ 501
Plays a role in the inducible expression of genes. Regulates hypertonicity-induced cellular accumulation of osmolytes.
Homo sapiens (taxid: 9606)
>sp|Q9WV30|NFAT5_MOUSE Nuclear factor of activated T-cells 5 OS=Mus musculus GN=Nfat5 PE=2 SV=1 Back     alignment and function description
>sp|Q60591|NFAC2_MOUSE Nuclear factor of activated T-cells, cytoplasmic 2 OS=Mus musculus GN=Nfatc2 PE=1 SV=3 Back     alignment and function description
>sp|O88942|NFAC1_MOUSE Nuclear factor of activated T-cells, cytoplasmic 1 OS=Mus musculus GN=Nfatc1 PE=2 SV=1 Back     alignment and function description
>sp|O77638|NFAC1_PIG Nuclear factor of activated T-cells, cytoplasmic 1 OS=Sus scrofa GN=NFATC1 PE=2 SV=2 Back     alignment and function description
>sp|Q12968|NFAC3_HUMAN Nuclear factor of activated T-cells, cytoplasmic 3 OS=Homo sapiens GN=NFATC3 PE=1 SV=1 Back     alignment and function description
>sp|Q8K120|NFAC4_MOUSE Nuclear factor of activated T-cells, cytoplasmic 4 OS=Mus musculus GN=Nfatc4 PE=1 SV=2 Back     alignment and function description
>sp|Q14934|NFAC4_HUMAN Nuclear factor of activated T-cells, cytoplasmic 4 OS=Homo sapiens GN=NFATC4 PE=1 SV=2 Back     alignment and function description
>sp|O95644|NFAC1_HUMAN Nuclear factor of activated T-cells, cytoplasmic 1 OS=Homo sapiens GN=NFATC1 PE=1 SV=3 Back     alignment and function description
>sp|Q13469|NFAC2_HUMAN Nuclear factor of activated T-cells, cytoplasmic 2 OS=Homo sapiens GN=NFATC2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
242014887 489 conserved hypothetical protein [Pediculu 0.875 0.601 0.582 3e-97
383864604 1287 PREDICTED: uncharacterized protein LOC10 0.872 0.227 0.532 1e-95
340721630 1256 PREDICTED: hypothetical protein LOC10064 0.872 0.233 0.533 2e-95
350404893 1280 PREDICTED: hypothetical protein LOC10074 0.767 0.201 0.602 7e-95
350404887 1302 PREDICTED: hypothetical protein LOC10074 0.767 0.198 0.602 8e-95
328787246 1296 PREDICTED: hypothetical protein LOC40835 0.761 0.197 0.608 2e-94
345484735 1373 PREDICTED: hypothetical protein LOC10011 0.678 0.166 0.640 1e-92
91083923 1115 PREDICTED: similar to dNFAT [Tribolium c 0.845 0.254 0.537 1e-91
270008248 1048 hypothetical protein TcasGA2_TC014708 [T 0.845 0.270 0.537 1e-91
307196026 1204 Nuclear factor of activated T-cells 5 [H 0.702 0.196 0.606 1e-91
>gi|242014887|ref|XP_002428114.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512645|gb|EEB15376.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/326 (58%), Positives = 225/326 (69%), Gaps = 32/326 (9%)

Query: 17  PDFKRRRPTPTVKVESDNANANFTFPQNPLPLCSMASSSSVAPTR-----PGRRLYGKRL 71
           PD KR++     ++E D+ N  F FP    P     S       +     PGR   G+  
Sbjct: 119 PDAKRKKYYNNTEIEPDDINDEFCFPDILRPKSENDSGDDYTKGKLLLSMPGR---GRGH 175

Query: 72  SNITAQNSASISYSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVG 131
              +   +  +S + RD    L I  QPEQQHRARYQTEGSRGAVKD++GNGFPVVKL G
Sbjct: 176 PGTSVTLATPLSTTSRDGKTQLIIVCQPEQQHRARYQTEGSRGAVKDRTGNGFPVVKLAG 235

Query: 132 YNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSV 191
           YN P TL++FIGTD G++ PHMFYQACRV+GKNSTPC+E+K DGTV+I++D DPSKDM +
Sbjct: 236 YNKPTTLQIFIGTDVGRVTPHMFYQACRVSGKNSTPCVERKIDGTVVIEVDLDPSKDMVI 295

Query: 192 TCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPI 251
           TCDCVGILKERNVDVE RFP+ +  +NKK+STRCRMVFRTTI +     TEVLQV S PI
Sbjct: 296 TCDCVGILKERNVDVEHRFPDQTGTRNKKKSTRCRMVFRTTITN-TEGLTEVLQVCSQPI 354

Query: 252 MCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQV 311
           +C QPPGVPEICKKSLTSCPVTGGAELF                    ILGKNFLKDT+V
Sbjct: 355 VCTQPPGVPEICKKSLTSCPVTGGAELF--------------------ILGKNFLKDTKV 394

Query: 312 KFQKMVADIC-QWEESVLPDKEFLQQ 336
            FQ+  A++   WEE+VLPDKEFLQQ
Sbjct: 395 IFQQ--AEVHPPWEETVLPDKEFLQQ 418

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383864604|ref|XP_003707768.1| PREDICTED: uncharacterized protein LOC100881293 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340721630|ref|XP_003399220.1| PREDICTED: hypothetical protein LOC100642970 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350404893|ref|XP_003487252.1| PREDICTED: hypothetical protein LOC100741848 isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350404887|ref|XP_003487251.1| PREDICTED: hypothetical protein LOC100741848 isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|328787246|ref|XP_391906.4| PREDICTED: hypothetical protein LOC408354 [Apis mellifera] Back     alignment and taxonomy information
>gi|345484735|ref|XP_001599457.2| PREDICTED: hypothetical protein LOC100114432 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|91083923|ref|XP_974734.1| PREDICTED: similar to dNFAT [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270008248|gb|EFA04696.1| hypothetical protein TcasGA2_TC014708 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307196026|gb|EFN77751.1| Nuclear factor of activated T-cells 5 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
FB|FBgn0030505 1457 NFAT "NFAT homolog" [Drosophil 0.791 0.182 0.608 4.6e-81
ZFIN|ZDB-GENE-030131-6322 1416 nfat5 "nuclear factor of activ 0.833 0.197 0.407 1.6e-53
UNIPROTKB|F1PBY6 1527 NFAT5 "Uncharacterized protein 0.833 0.183 0.426 4.3e-52
UNIPROTKB|O94916 1531 NFAT5 "Nuclear factor of activ 0.833 0.182 0.422 5.5e-52
UNIPROTKB|E9PHR7 1549 NFAT5 "Nuclear factor of-activ 0.833 0.180 0.422 5.7e-52
UNIPROTKB|F1MAZ9 1505 NFAT5 "Uncharacterized protein 0.833 0.186 0.422 6.9e-52
MGI|MGI:1859333 1225 Nfat5 "nuclear factor of activ 0.833 0.228 0.422 7.1e-52
UNIPROTKB|F1S394 1551 NFAT5 "Uncharacterized protein 0.833 0.180 0.422 9.3e-52
RGD|1309142 1543 Nfat5 "nuclear factor of activ 0.833 0.181 0.422 1.2e-51
UNIPROTKB|F1NSH4 1437 NFAT5 "Uncharacterized protein 0.830 0.194 0.422 2.1e-51
FB|FBgn0030505 NFAT "NFAT homolog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 823 (294.8 bits), Expect = 4.6e-81, P = 4.6e-81
 Identities = 166/273 (60%), Positives = 197/273 (72%)

Query:    65 RLYGKRLSNITAQNSASISYSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGF 124
             R+  KR    T  NS + S    D  V LEI SQPEQQHRARYQTEGSRGAVKD+SGNGF
Sbjct:   480 RVANKRQPT-TPLNSVASS---NDGQVQLEILSQPEQQHRARYQTEGSRGAVKDRSGNGF 535

Query:   125 PVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFD 184
             P+V+L GY+  A L+VFIGTD G++APHMFYQAC+VAGKNST C EKK DGT++I+IDF 
Sbjct:   536 PIVRLTGYDKVAVLQVFIGTDIGRVAPHMFYQACKVAGKNSTQCNEKKVDGTMVIEIDFK 595

Query:   185 PSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHP-GTRETEV 243
             P  DM++TCDCVGILKERNVDVE RFPE  + KNKK+STRCRMVFRT +    GT  TE 
Sbjct:   596 PETDMTITCDCVGILKERNVDVEHRFPEHLAQKNKKKSTRCRMVFRTQLTRDDGT--TET 653

Query:   244 LQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGK 303
             LQV S+PI+C QPPGVPEICKKSL SCPV GG ELF +          + Q+  D++ G 
Sbjct:   654 LQVCSNPIICTQPPGVPEICKKSLNSCPVDGGLELFIIGKNFLKDTHVVFQETYDSVNGD 713

Query:   304 NFLKDTQVKFQKMVADICQWEESVLPDKEFLQQ 336
             +   +  V+ Q +      WE+SVLPDKE+L Q
Sbjct:   714 DPATEIAVRQQLIGGTAALWEQSVLPDKEYLHQ 746
GO:0005634 "nucleus" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006351 "transcription, DNA-dependent" evidence=ISS
GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IGI
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009651 "response to salt stress" evidence=IMP
GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI
GO:2000301 "negative regulation of synaptic vesicle exocytosis" evidence=IDA
GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP
ZFIN|ZDB-GENE-030131-6322 nfat5 "nuclear factor of activated T-cells 5, tonicity-responsive" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PBY6 NFAT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O94916 NFAT5 "Nuclear factor of activated T-cells 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PHR7 NFAT5 "Nuclear factor of-activated T-cells 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MAZ9 NFAT5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1859333 Nfat5 "nuclear factor of activated T cells 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S394 NFAT5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309142 Nfat5 "nuclear factor of activated T-cells 5, tonicity-responsive" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSH4 NFAT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
cd07882161 cd07882, RHD-n_TonEBP, N-terminal sub-domain of th 4e-84
cd07927161 cd07927, RHD-n_NFAT_like, N-terminal sub-domain of 2e-53
cd07881175 cd07881, RHD-n_NFAT, N-terminal sub-domain of the 3e-45
pfam00554169 pfam00554, RHD, Rel homology domain (RHD) 4e-33
cd07827174 cd07827, RHD-n, N-terminal sub-domain of the Rel h 6e-28
cd01178101 cd01178, IPT_NFAT, IPT domain of the NFAT family o 2e-14
cd00602101 cd00602, IPT_TF, IPT domain of eukaryotic transcri 1e-07
cd07883197 cd07883, RHD-n_NFkB, N-terminal sub-domain of the 1e-06
cd07887173 cd07887, RHD-n_Dorsal_Dif, N-terminal sub-domain o 1e-04
cd07935202 cd07935, RHD-n_NFkB1, N-terminal sub-domain of the 3e-04
cd07884159 cd07884, RHD-n_Relish, N-terminal sub-domain of th 7e-04
cd07934185 cd07934, RHD-n_NFkB2, N-terminal sub-domain of the 0.001
>gnl|CDD|143642 cd07882, RHD-n_TonEBP, N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP) Back     alignment and domain information 
 Score =  251 bits (642), Expect = 4e-84
 Identities = 90/163 (55%), Positives = 115/163 (70%), Gaps = 4/163 (2%)

Query: 93  LEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPH 152
           L+I  QPE QHRARY TEGSRG+VKD+S  GFP VKL GYN P  L+VF+GTD G++ PH
Sbjct: 3   LKILVQPETQHRARYLTEGSRGSVKDRSQQGFPTVKLEGYNKPVVLQVFVGTDSGRVKPH 62

Query: 153 MFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPE 212
            FYQAC+V G+N+TPC E   +GT +I++  DP+ +M+++ DCVGILK RN DVE R   
Sbjct: 63  GFYQACKVTGRNTTPCEEVDVEGTTVIEVPLDPTNNMTISVDCVGILKLRNADVEARIGI 122

Query: 213 DSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQ 255
              A++KK+STR R+VFR  I       T  LQ  S+PI+C Q
Sbjct: 123 ---ARSKKKSTRVRLVFRVIIPRKDG-STLTLQTVSNPILCTQ 161

Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the tonicity-responsive enhancer binding protein (TonEBP), also called NFAT5. Mammalian TonEBP regulates the expression of genes in response to tonicity. It plays a pivotal role in urinary concentrating mechanisms in kidney medulla, by triggering the accumulation of osmolytes that enable renal medullary cells to tolerate high levels of urea and salt. Length = 161
>gnl|CDD|143648 cd07927, RHD-n_NFAT_like, N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins and similar proteins Back     alignment and domain information
>gnl|CDD|143641 cd07881, RHD-n_NFAT, N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins Back     alignment and domain information
>gnl|CDD|201301 pfam00554, RHD, Rel homology domain (RHD) Back     alignment and domain information
>gnl|CDD|143640 cd07827, RHD-n, N-terminal sub-domain of the Rel homology domain (RHD) Back     alignment and domain information
>gnl|CDD|238583 cd01178, IPT_NFAT, IPT domain of the NFAT family of transcription factors Back     alignment and domain information
>gnl|CDD|238336 cd00602, IPT_TF, IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa) Back     alignment and domain information
>gnl|CDD|143643 cd07883, RHD-n_NFkB, N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa light polypeptide gene enhancer in B-cells (NF-kappa B) Back     alignment and domain information
>gnl|CDD|143647 cd07887, RHD-n_Dorsal_Dif, N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Dorsal Back     alignment and domain information
>gnl|CDD|143651 cd07935, RHD-n_NFkB1, N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa B1 (NF-kappa B1) Back     alignment and domain information
>gnl|CDD|143644 cd07884, RHD-n_Relish, N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish Back     alignment and domain information
>gnl|CDD|143650 cd07934, RHD-n_NFkB2, N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor kappa B2 (NF-kappa B2) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
cd07882161 RHD-n_TonEBP N-terminal sub-domain of the Rel homo 100.0
cd07927161 RHD-n_NFAT_like N-terminal sub-domain of the Rel h 100.0
cd07881175 RHD-n_NFAT N-terminal sub-domain of the Rel homolo 100.0
cd07827174 RHD-n N-terminal sub-domain of the Rel homology do 100.0
cd07885169 RHD-n_RelA N-terminal sub-domain of the Rel homolo 100.0
cd07933172 RHD-n_c-Rel N-terminal sub-domain of the Rel homol 100.0
cd07887173 RHD-n_Dorsal_Dif N-terminal sub-domain of the Rel 100.0
cd07934185 RHD-n_NFkB2 N-terminal sub-domain of the Rel homol 100.0
cd07883197 RHD-n_NFkB N-terminal sub-domain of the Rel homolo 100.0
cd07886172 RHD-n_RelB N-terminal sub-domain of the Rel homolo 100.0
PF00554169 RHD: Rel homology domain (RHD); InterPro: IPR01153 100.0
cd07935202 RHD-n_NFkB1 N-terminal sub-domain of the Rel homol 100.0
cd07884159 RHD-n_Relish N-terminal sub-domain of the Rel homo 100.0
cd01178101 IPT_NFAT IPT domain of the NFAT family of transcri 99.81
cd01177102 IPT_NFkappaB IPT domain of the transcription facto 99.8
cd00602101 IPT_TF IPT domain of eukaryotic transcription fact 99.68
cd0117585 IPT_COE IPT domain of the COE family (Col/Olf-1/EB 95.92
cd0010289 IPT Immunoglobulin-like fold, Plexins, Transcripti 94.76
smart0042990 IPT ig-like, plexins, transcription factors. 94.29
cd0060390 IPT_PCSR IPT domain of Plexins and Cell Surface Re 85.66
PF0183385 TIG: IPT/TIG domain; InterPro: IPR002909 This fami 83.63
>cd07882 RHD-n_TonEBP N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP) Back     alignment and domain information 
Probab=100.00  E-value=8.2e-67  Score=458.78  Aligned_cols=160  Identities=56%  Similarity=0.961  Sum_probs=156.2

Q ss_pred             eEEEeeCCccccccceeccCCCCccCCCCCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccCCCccccc
Q psy11902         92 YLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEK  171 (336)
Q Consensus        92 ~L~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~~t~C~E~  171 (336)
                      +|+|+|||++||||||+||||||||++.+++|||||||+||+|||+|+|||||+|++++||||||+||++||++|+|.|.
T Consensus         2 ~L~I~eQP~~~~RaRY~tEGSrGsvk~~s~~~~PtVkl~gy~gp~~l~V~lvT~d~~~rPH~fyq~~k~~Gk~~t~c~E~   81 (161)
T cd07882           2 ELKILVQPETQHRARYLTEGSRGSVKDRSQQGFPTVKLEGYNKPVVLQVFVGTDSGRVKPHGFYQACKVTGRNTTPCEEV   81 (161)
T ss_pred             eeEEEECCchhceEeeeccCcCccccCCCCCcCCeEEEeccCCCEEEEEEEEeCCCCcCCCcceeeeecccCCCccceee
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCCceEeceeeeeee
Q psy11902        172 KTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPI  251 (336)
Q Consensus       172 ~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g~~~~l~V~S~PI  251 (336)
                      .++|+.++||+|+|++||+++||||||||+||+|||.|+++++   +++|+|+|||||||||+++ +|..++|||+|+||
T Consensus        82 ~~~gt~v~ev~~~P~~~mta~~d~lGIl~lrn~Dve~r~~~~~---~~~k~t~vRLvFrv~ip~~-~G~~~~lqv~S~pI  157 (161)
T cd07882          82 DVEGTTVIEVPLDPTNNMTISVDCVGILKLRNADVEARIGIAR---SKKKSTRVRLVFRVIIPRK-DGSTLTLQTVSNPI  157 (161)
T ss_pred             ccCCcEEEEEEcCCCCceEEEecccceEEeehhchhhhccchh---hcccccEEEEEEEEEecCC-CCCEEeccccccce
Confidence            9999999999999999999999999999999999999999886   8999999999999999998 69999999999999


Q ss_pred             ecCC
Q psy11902        252 MCNQ  255 (336)
Q Consensus       252 ~dsK  255 (336)
                      .|+|
T Consensus       158 ~c~q  161 (161)
T cd07882         158 LCTQ  161 (161)
T ss_pred             eecC
Confidence            9986

Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the tonicity-responsive enhancer binding protein (TonEBP), also called NFAT5. Mammalian TonEBP regulates the expression of genes in response to tonicity. It plays a pivotal role in urinary concentrating mechanisms in kidney medulla, by triggering the accumulation of osmolytes that enable renal medullary cells to tolerate high levels of urea and salt.
>cd07927 RHD-n_NFAT_like N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins and similar proteins Back     alignment and domain information
>cd07881 RHD-n_NFAT N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins Back     alignment and domain information
>cd07827 RHD-n N-terminal sub-domain of the Rel homology domain (RHD) Back     alignment and domain information
>cd07885 RHD-n_RelA N-terminal sub-domain of the Rel homology domain (RHD) of RelA Back     alignment and domain information
>cd07933 RHD-n_c-Rel N-terminal sub-domain of the Rel homology domain (RHD) of c-Rel Back     alignment and domain information
>cd07887 RHD-n_Dorsal_Dif N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Dorsal Back     alignment and domain information
>cd07934 RHD-n_NFkB2 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor kappa B2 (NF-kappa B2) Back     alignment and domain information
>cd07883 RHD-n_NFkB N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa light polypeptide gene enhancer in B-cells (NF-kappa B) Back     alignment and domain information
>cd07886 RHD-n_RelB N-terminal sub-domain of the Rel homology domain (RHD) of the reticuloendotheliosis viral oncogene homolog B (RelB) protein Back     alignment and domain information
>PF00554 RHD: Rel homology domain (RHD); InterPro: IPR011539 The Rel homology domain (RHD) is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish, NFAT, among others Back     alignment and domain information
>cd07935 RHD-n_NFkB1 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa B1 (NF-kappa B1) Back     alignment and domain information
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish Back     alignment and domain information
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors Back     alignment and domain information
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors Back     alignment and domain information
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa) Back     alignment and domain information
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors Back     alignment and domain information
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT) Back     alignment and domain information
>smart00429 IPT ig-like, plexins, transcription factors Back     alignment and domain information
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins Back     alignment and domain information
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
1imh_C281 TonebpDNA COMPLEX Length = 281 6e-63
2o93_L301 Crystal Structure Of Nfat Bound To The Hiv-1 Ltr Ta 1e-34
1a02_N301 Structure Of The Dna Binding Domains Of Nfat, Fos A 2e-34
1p7h_L286 Structure Of Nfat1 Bound As A Dimer To The Hiv-1 Lt 2e-34
1s9k_C280 Crystal Structure Of Human Nfat1 And Fos-Jun On The 2e-34
1owr_M284 Crystal Structure Of Human Nfat1 Bound Monomericall 2e-34
2as5_N287 Structure Of The Dna Binding Domains Of Nfat And Fo 2e-34
3qrf_N286 Structure Of A Domain-Swapped Foxp3 Dimer Length = 8e-34
1a66_A178 Solution Nmr Structure Of The Core Nfatc1DNA COMPLE 7e-31
1nfa_A178 Human Transcription Factor Nfatc Dna Binding Domain 3e-30
2i9t_A279 Structure Of Nf-Kb P65-P50 Heterodimer Bound To Prd 4e-08
1vkx_A273 Crystal Structure Of The Nfkb P50P65 HETERODIMER CO 4e-08
1ram_A273 A Novel Dna Recognition Mode By Nf-Kb P65 Homodimer 4e-08
1ikn_A286 IkappabalphaNF-Kappab Complex Length = 286 4e-08
1le5_A274 Crystal Structure Of A Nf-Kb Heterodimer Bound To A 4e-08
2o61_A 540 Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The 1e-07
1nfi_A301 I-Kappa-B-AlphaNF-Kappa-B Complex Length = 301 6e-07
>pdb|1IMH|C Chain C, TonebpDNA COMPLEX Length = 281 Back     alignment and structure 
Iteration: 1

 Score =  237 bits (605), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 154/253 (60%), Gaps = 24/253 (9%)
Query: 84  YSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIG 143
           Y V+     L+I  QPE QHRARY TEGSRG+VKD++  GFP VKL G+N P  L+VF+G
Sbjct: 10  YPVKSEGKELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVG 69
Query: 144 TDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERN 203
            D G++ PH FYQACRV G+N+TPC E   +GT +I++  DPS +M++  DCVGILK RN
Sbjct: 70  NDSGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRN 129
Query: 204 VDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPGVPEIC 263
            DVE R      A +KK+STR R+VFR  I+      T  LQ  S PI+C QP GVPEI 
Sbjct: 130 ADVEARI---GIAGSKKKSTRARLVFRVNIMRKDG-STLTLQTPSSPILCTQPAGVPEIL 185
Query: 264 KKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQW 323
           KKSL SC V G  E+F                    ++GKNFLK T+V FQ+ V+D   W
Sbjct: 186 KKSLHSCSVKGEEEVF--------------------LIGKNFLKGTKVIFQENVSDENSW 225
Query: 324 EESVLPDKEFLQQ 336
           +     D E   Q
Sbjct: 226 KSEAEIDMELFHQ 238
>pdb|2O93|L Chain L, Crystal Structure Of Nfat Bound To The Hiv-1 Ltr Tandem Kappab Enhancer Element Length = 301 Back     alignment and structure
>pdb|1A02|N Chain N, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun Bound To Dna Length = 301 Back     alignment and structure
>pdb|1P7H|L Chain L, Structure Of Nfat1 Bound As A Dimer To The Hiv-1 Ltr Kb Element Length = 286 Back     alignment and structure
>pdb|1S9K|C Chain C, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2 Arre1 Site Length = 280 Back     alignment and structure
>pdb|1OWR|M Chain M, Crystal Structure Of Human Nfat1 Bound Monomerically To Dna Length = 284 Back     alignment and structure
>pdb|2AS5|N Chain N, Structure Of The Dna Binding Domains Of Nfat And Foxp2 Bound Specifically To Dna. Length = 287 Back     alignment and structure
>pdb|3QRF|N Chain N, Structure Of A Domain-Swapped Foxp3 Dimer Length = 286 Back     alignment and structure
>pdb|1A66|A Chain A, Solution Nmr Structure Of The Core Nfatc1DNA COMPLEX, 18 Structures Length = 178 Back     alignment and structure
>pdb|1NFA|A Chain A, Human Transcription Factor Nfatc Dna Binding Domain, Nmr, 10 Structures Length = 178 Back     alignment and structure
>pdb|2I9T|A Chain A, Structure Of Nf-Kb P65-P50 Heterodimer Bound To Prdii Element Of B-Interferon Promoter Length = 279 Back     alignment and structure
>pdb|1VKX|A Chain A, Crystal Structure Of The Nfkb P50P65 HETERODIMER COMPLEXED To The Immunoglobulin Kb Dna Length = 273 Back     alignment and structure
>pdb|1RAM|A Chain A, A Novel Dna Recognition Mode By Nf-Kb P65 Homodimer Length = 273 Back     alignment and structure
>pdb|1IKN|A Chain A, IkappabalphaNF-Kappab Complex Length = 286 Back     alignment and structure
>pdb|1LE5|A Chain A, Crystal Structure Of A Nf-Kb Heterodimer Bound To An Ifnb-Kb Length = 274 Back     alignment and structure
>pdb|2O61|A Chain A, Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The Interferon-B Enhancer Length = 540 Back     alignment and structure
>pdb|1NFI|A Chain A, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
1imh_C281 NF-AT5, tonebp, nuclear factor of activated T cell 7e-67
1p7h_L286 Nuclear factor of activated T-cells, cytoplasmic 2 2e-57
1ikn_A286 P65, protein (NF-kappa-B P65 subunit); transcripti 1e-46
1gji_A275 C-REL protein, C-REL proto-oncogene protein; NF-KB 4e-46
2o61_A 540 Transcription factor P65/interferon regulatory FA 4e-44
1a3q_A285 Protein (nuclear factor kappa-B P52); transcriptio 1e-38
2v2t_A288 RELB, transcription factor RELB; 4-diphosphocytidy 2e-38
1nfk_A325 Protein (nuclear factor kappa-B (NF-KB)); NF-KB P5 4e-33
1svc_P365 Protein (nuclear factor kappa-B (NF-KB)); DNA-bind 9e-33
1bvo_A175 Transcription factor gambif1; REL protein, morphog 5e-12
2yrp_A114 Nuclear factor of activated T-cells, cytoplasmic 4 4e-11
1u36_A106 DNA-binding, nuclear factor NF-kappa-B P105 subuni 2e-08
1ikn_C119 P50D, protein (NF-kappa-B P50D subunit); transcrip 5e-08
1zk9_A110 Transcription factor RELB; NF-KB, transcription fa 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
1my7_A114 NF-kappab P65 (RELA) subunit; immunoglobulin, IG, 8e-04
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 Length = 281 Back     alignment and structure
 Score =  210 bits (536), Expect = 7e-67
 Identities = 122/258 (47%), Positives = 153/258 (59%), Gaps = 24/258 (9%)

Query: 79  SASISYSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATL 138
                Y V+     L+I  QPE QHRARY TEGSRG+VKD++  GFP VKL G+N P  L
Sbjct: 5   MLCGQYPVKSEGKELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVL 64

Query: 139 EVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGI 198
           +VF+G D G++ PH FYQACRV G+N+TPC E   +GT +I++  DPS +M++  DCVGI
Sbjct: 65  QVFVGNDSGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGI 124

Query: 199 LKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPG 258
           LK RN DVE R      A +KK+STR R+VFR  I+         LQ  S PI+C QP G
Sbjct: 125 LKLRNADVEARIGI---AGSKKKSTRARLVFRVNIMRKDGSTL-TLQTPSSPILCTQPAG 180

Query: 259 VPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVA 318
           VPEI KKSL SC V G  E+F                    ++GKNFLK T+V FQ+ V+
Sbjct: 181 VPEILKKSLHSCSVKGEEEVF--------------------LIGKNFLKGTKVIFQENVS 220

Query: 319 DICQWEESVLPDKEFLQQ 336
           D   W+     D E   Q
Sbjct: 221 DENSWKSEAEIDMELFHQ 238
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A* Length = 286 Back     alignment and structure
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A Length = 286 Back     alignment and structure
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3 Length = 275 Back     alignment and structure
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens} Length = 540 Back     alignment and structure
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A Length = 285 Back     alignment and structure
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A Length = 288 Back     alignment and structure
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B Length = 325 Back     alignment and structure
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 Length = 365 Back     alignment and structure
>1bvo_A Transcription factor gambif1; REL protein, morphogen, immunity, development, insects, complex (transcription factor/DNA); HET: DNA; 2.70A {Anopheles gambiae} SCOP: b.2.5.3 Length = 175 Back     alignment and structure
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B Length = 106 Back     alignment and structure
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 Length = 119 Back     alignment and structure
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A Length = 110 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A Length = 114 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
1imh_C281 NF-AT5, tonebp, nuclear factor of activated T cell 100.0
1p7h_L286 Nuclear factor of activated T-cells, cytoplasmic 2 100.0
1nfk_A325 Protein (nuclear factor kappa-B (NF-KB)); NF-KB P5 100.0
1ikn_A286 P65, protein (NF-kappa-B P65 subunit); transcripti 100.0
1svc_P365 Protein (nuclear factor kappa-B (NF-KB)); DNA-bind 100.0
1gji_A275 C-REL protein, C-REL proto-oncogene protein; NF-KB 100.0
1a3q_A285 Protein (nuclear factor kappa-B P52); transcriptio 100.0
2v2t_A288 RELB, transcription factor RELB; 4-diphosphocytidy 100.0
2o61_A 540 Transcription factor P65/interferon regulatory FA 100.0
1bvo_A175 Transcription factor gambif1; REL protein, morphog 100.0
1u36_A106 DNA-binding, nuclear factor NF-kappa-B P105 subuni 99.82
2yrp_A114 Nuclear factor of activated T-cells, cytoplasmic 4 99.81
1ikn_C119 P50D, protein (NF-kappa-B P50D subunit); transcrip 99.81
1my7_A114 NF-kappab P65 (RELA) subunit; immunoglobulin, IG, 99.75
1zk9_A110 Transcription factor RELB; NF-KB, transcription fa 99.74
1oy3_C136 Transcription factor P65; protein-protein complex, 99.72
3muj_A138 Transcription factor COE3; immunoglobulin like fol 94.21
3mlp_A 402 Transcription factor COE1; transcription factor, p 93.94
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 Back     alignment and structure
Probab=100.00  E-value=1.6e-88  Score=640.72  Aligned_cols=229  Identities=53%  Similarity=0.914  Sum_probs=221.8

Q ss_pred             cccCCCCeeEEEeeCCccccccceeccCCCCccCCCCCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceeccc
Q psy11902         84 YSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGK  163 (336)
Q Consensus        84 ~ps~~~~p~L~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK  163 (336)
                      +|+..++|||+|+|||+++|||||+||||||||+|+++||||+|||+||+|+|.|+|+|+|+|++++|||||||||||||
T Consensus        10 ~p~~~~~p~l~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkl~gy~g~a~v~v~~~t~d~~~~pH~h~~v~~lvGK   89 (281)
T 1imh_C           10 YPVKSEGKELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKPHGFYQACRVTGR   89 (281)
T ss_dssp             CCSEETTEEEEEEECBCSBCCCEETTSCCCCCCCBTTSSSCCEEEEESCCSCEEEEEEEEESSSSCCBCSSEEEEECCCT
T ss_pred             CCccCCCceEEEEeCCchhceEEEecCCCCcccccccCCCCCEEEEecCCCCEEEEEEEEECCCCCCCCccceeeEeecC
Confidence            78889999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCCceEe
Q psy11902        164 NSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEV  243 (336)
Q Consensus       164 ~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g~~~~  243 (336)
                      ++|+|.|.+++|+|++||+|.|+++|+++|+||||||+||+|||+|+++++   .++|+|+|||||||||+++ +|++++
T Consensus        90 ~~t~c~e~~~~g~~~~ev~l~P~~~m~~~f~~lGI~~~rkkdve~rk~~~~---~~~k~~~VRL~F~v~i~~~-~G~~~~  165 (281)
T 1imh_C           90 NTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRNADVEARIGIAG---SKKKSTRARLVFRVNIMRK-DGSTLT  165 (281)
T ss_dssp             TSCCCEEEEETTEEEEEEEECGGGTTEEECCSEEEEECCHHHHHTTCTTSS---TTCCCCEEEEEEEEEEECS-SSCEEE
T ss_pred             CCCCccccccCCCEEEEEecCCCCCCEEEEcCeeEEEEeecChHHhcCCCh---hhhhccEEEEEEEEEEECC-CCCEEE
Confidence            999999999999999999999999999999999999999999999998765   6788999999999999998 577999


Q ss_pred             ceeeeeeeecCCCCCCCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEEeeCCccCe
Q psy11902        244 LQVASHPIMCNQPPGVPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQW  323 (336)
Q Consensus       244 l~V~S~PI~dsK~~~~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E~~~~~~~W  323 (336)
                      |+++|+||||+|++++|+|||+|++||||+||+|||                    ||||||++||+|||||+++|+.+|
T Consensus       166 L~~~S~PI~d~k~~~~l~I~r~s~~sg~v~GG~Ev~--------------------Llc~kv~KdikVrF~E~~~d~~~W  225 (281)
T 1imh_C          166 LQTPSSPILCTQPAGVPEILKKSLHSCSVKGEEEVF--------------------LIGKNFLKGTKVIFQENVSDENSW  225 (281)
T ss_dssp             EEEECCCEECSCCCCCCEEEEESCCEEETTCCCEEE--------------------EEEECCCTTCEEEEESSSCTTCSC
T ss_pred             ccCcCcceecCCCCCCCeEEEEecCccccCCCcEEE--------------------EEeeccCCCcEEEEEEeCCCCCce
Confidence            999999999999999999999999999999999999                    999999999999999998888999


Q ss_pred             eEeEeCCccccCC
Q psy11902        324 EESVLPDKEFLQQ  336 (336)
Q Consensus       324 Ea~a~~dk~~~~~  336 (336)
                      |++|+||++++||
T Consensus       226 E~~~~f~~~dvhQ  238 (281)
T 1imh_C          226 KSEAEIDMELFHQ  238 (281)
T ss_dssp             EEEECBCGGGCCS
T ss_pred             EEeEEeChhhccc
Confidence            9999999999997
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A* Back     alignment and structure
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B Back     alignment and structure
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A Back     alignment and structure
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 Back     alignment and structure
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3 Back     alignment and structure
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A Back     alignment and structure
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A Back     alignment and structure
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens} Back     alignment and structure
>1bvo_A Transcription factor gambif1; REL protein, morphogen, immunity, development, insects, complex (transcription factor/DNA); HET: DNA; 2.70A {Anopheles gambiae} SCOP: b.2.5.3 Back     alignment and structure
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B Back     alignment and structure
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 Back     alignment and structure
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A Back     alignment and structure
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A Back     alignment and structure
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A Back     alignment and structure
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Back     alignment and structure
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 336
d1imhc2180 b.2.5.3 (C:188-367) T-cell transcription factor NF 3e-62
d1p7hl2183 b.2.5.3 (L:393-575) T-cell transcription factor NF 3e-50
d1gjia2175 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB) 3e-34
d1ikna2173 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB 2e-32
d1a3qa2184 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB 2e-30
d1bvoa_175 b.2.5.3 (A:) Dorsal homologue Gambif1 {African mal 9e-29
d1imhc1101 b.1.18.1 (C:368-468) T-cell transcription factor N 4e-11
d1p7hl1103 b.1.18.1 (L:576-678) T-cell transcription factor N 3e-09
d1u36a_104 b.1.18.1 (A:) p50 subunit of NF-kappa B transcript 3e-09
d1a3qa1101 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NF 6e-08
d1gjia1100 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NF 1e-07
d1ooaa2213 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB 1e-07
d1my7a_107 b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), di 4e-06
>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5 (TONEBP), DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: Rel/Dorsal transcription factors, DNA-binding domain
domain: T-cell transcription factor NFAT5 (TONEBP), DNA-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (494), Expect = 3e-62
 Identities = 91/167 (54%), Positives = 114/167 (68%), Gaps = 4/167 (2%)

Query: 92  YLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAP 151
            L+I  QPE QHRARY TEGSRG+VKD++  GFP VKL G+N P  L+VF+G D G++ P
Sbjct: 18  ELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKP 77

Query: 152 HMFYQACRVAGKNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFP 211
           H FYQACRV G+N+TPC E   +GT +I++  DPS +M++  DCVGILK RN DVE R  
Sbjct: 78  HGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRNADVEARIG 137

Query: 212 EDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPIMCNQPPG 258
               A +KK+STR R+VFR  I+      T  LQ  S PI+C QP G
Sbjct: 138 I---AGSKKKSTRARLVFRVNIMRKDGS-TLTLQTPSSPILCTQPAG 180
>d1p7hl2 b.2.5.3 (L:393-575) T-cell transcription factor NFAT1 (NFATC), DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 183 Back     information, alignment and structure
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} Length = 175 Back     information, alignment and structure
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 Back     information, alignment and structure
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 175 Back     information, alignment and structure
>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} Length = 100 Back     information, alignment and structure
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 Back     information, alignment and structure
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
d1imhc2180 T-cell transcription factor NFAT5 (TONEBP), DNA-bi 100.0
d1p7hl2183 T-cell transcription factor NFAT1 (NFATC), DNA-bin 100.0
d1ooaa2213 p50 subunit of NF-kappa B (NFKB), N-terminal domai 100.0
d1gjia2175 p65 subunit of NF-kappa B (NFKB), N-terminal domai 100.0
d1ikna2173 p65 subunit of NF-kappa B (NFKB), N-terminal domai 100.0
d1bvoa_175 Dorsal homologue Gambif1 {African malaria mosquito 100.0
d1a3qa2184 p52 subunit of NF-kappa B (NFKB), N-terminal domai 100.0
d1u36a_104 p50 subunit of NF-kappa B transcription factor {Hu 99.79
d1a3qa1101 p52 subunit of NF-kappa B (NFKB) {Human (Homo sapi 99.79
d1my7a_107 p65 subunit of NF-kappa B (NFKB), dimerization dom 99.74
d1gjia1100 p65 subunit of NF-kappa B (NFKB), dimerization dom 99.74
d1imhc1101 T-cell transcription factor NFAT5 (TONEBP) {Human 99.73
d1p7hl1103 T-cell transcription factor NFAT1 (NFATC2) {Human 99.57
>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5 (TONEBP), DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: Rel/Dorsal transcription factors, DNA-binding domain
domain: T-cell transcription factor NFAT5 (TONEBP), DNA-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-68  Score=471.54  Aligned_cols=171  Identities=54%  Similarity=0.946  Sum_probs=165.7

Q ss_pred             cccCCCCeeEEEeeCCccccccceeccCCCCccCCCCCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceeccc
Q psy11902         84 YSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGK  163 (336)
Q Consensus        84 ~ps~~~~p~L~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK  163 (336)
                      +|+..++|+|+|+|||++||||||+||||||||+|+++||||+|||+||+|+|+|+|||||+|++++|||||||||||||
T Consensus        10 ~P~~~~~~~l~I~eQP~~~~RfRY~~EGs~Gsi~g~~~kt~Ptv~l~~y~g~~~v~v~~vt~d~~~~pHp~~~~h~lvGK   89 (180)
T d1imhc2          10 YPVKSEGKELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKPHGFYQACRVTGR   89 (180)
T ss_dssp             CCSEETTEEEEEEECBCSBCCCEETTSCCCCCCCBTTSSSCCEEEEESCCSCEEEEEEEEESSSSCCBCSSEEEEECCCT
T ss_pred             CCCCCCCceEEEEECCchhceeeccccCccCCcCCCCCCcCCeEEEecCCCcEEEEEEEEeCCCCCCCCCccceeEcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCCceEe
Q psy11902        164 NSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEV  243 (336)
Q Consensus       164 ~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g~~~~  243 (336)
                      +.++|.|..++|+|+++|.+.|+++|+++|+||||||+||+|||+++.++.   .++++++|||||||||+++ +|++..
T Consensus        90 ~~~~~~e~~~~G~~v~~v~~~P~~~m~~~f~~lGI~~vrkkdve~~l~~r~---~k~~~~~VRLcFqa~i~~~-~G~~~~  165 (180)
T d1imhc2          90 NTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRNADVEARIGIAG---SKKKSTRARLVFRVNIMRK-DGSTLT  165 (180)
T ss_dssp             TSCCCEEEEETTEEEEEEEECGGGTTEEECCSEEEEECCHHHHHTTCTTSS---TTCCCCEEEEEEEEEEECS-SSCEEE
T ss_pred             cCccceeeecCCceEEEeecCCCCceEEEeeccccEEEecccHHHHhHHhH---hhcCCCeEEEEEEEEEEcC-CCCEEc
Confidence            999999999999999999999999999999999999999999999999876   7888999999999999998 688889


Q ss_pred             ceeeeeeeecCCCCC
Q psy11902        244 LQVASHPIMCNQPPG  258 (336)
Q Consensus       244 l~V~S~PI~dsK~~~  258 (336)
                      +||+|+||+|+|++|
T Consensus       166 lpVvS~PI~csq~~g  180 (180)
T d1imhc2         166 LQTPSSPILCTQPAG  180 (180)
T ss_dssp             EEEECCCEECSCCCC
T ss_pred             CCcccCCcccCCCCC
Confidence            999999999999975
>d1p7hl2 b.2.5.3 (L:393-575) T-cell transcription factor NFAT1 (NFATC), DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} Back     information, alignment and structure
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Back     information, alignment and structure
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} Back     information, alignment and structure
>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure