Psyllid ID: psy11905

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MSHGAEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGCHSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMVDFSSARLDSAYTEPK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccEEccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHcEEcccccccc
Coil and Loop (DISEMBL)
mshgaeqsssekTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQqesgitpsldlntmENRIMIRDAIQNGRIQEATALVNELYpelldndrYIYFHLQQLHLLELIRENKIEEALHFAQEQlsesgqsdpDILNELERTMALLafgepmnspfgdllNQAHRQKVASQLNTAILKMehhestspRLLNLLKIILWSQgeldkkkieypkmrafsqlcgchsitglsftqSSYLLSLVSSTCNAATGRYSIKVALNTAILKMehhestspRLLNLLKIILWSQgeldkkkieypkmvdfssarldsaytepk
Flexible Loop (DISEMBL)
mshgaeqsssektWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFqqesgitpsldlntMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEqlsesgqsdPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGCHSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGeldkkkieypkmvdfssarldsaytepk
Low Complexity Region (SEG)
MSHGAEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGCHSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMVDFSSARLDSAYTEPK
Disordered region (IsUnstruct)
*************WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAE**********SLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHF*********************TMALLAFG**********************LNTAILK********PRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGCHSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYP******************
Disordered Region (DISOPRED)
*********************HIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILK*********RLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGCHSITG*************SSTCNAATGRYSIKVA*****************LLNLLKIILWSQGELDKKKIEYPKMVDFSSARL********
Disordered Region (DISEMBL)
************TWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQ********SDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGCHSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMVDFSSARL********
Disordered Region (DISPRO)
***********KTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGCHSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMVDFSSARLDSA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHGAEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGCHSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMVDFSSARLDSAYTEPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q32L52	228	Glucose-induced degradati	yes	N/A	0.652	0.907	0.615	4e-67
Q5ZKQ7	228	Glucose-induced degradati	yes	N/A	0.652	0.907	0.615	2e-66
Q9NWU2	228	Glucose-induced degradati	yes	N/A	0.652	0.907	0.610	3e-66
Q9D7M1	228	Glucose-induced degradati	yes	N/A	0.652	0.907	0.610	4e-66
Q6PC55	228	Glucose-induced degradati	yes	N/A	0.665	0.925	0.584	8e-65
A7SWD3	225	Glucose-induced degradati	N/A	N/A	0.662	0.933	0.537	6e-62
Q54X16	228	Glucose-induced degradati	yes	N/A	0.671	0.934	0.441	4e-48
Q10446	240	Uncharacterized protein C	yes	N/A	0.637	0.841	0.347	5e-21
Q6C435	564	Protein FYV10 OS=Yarrowia	no	N/A	0.454	0.255	0.287	8e-10
Q5R532	396	Macrophage erythroblast a	yes	N/A	0.479	0.383	0.230	4e-06

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score =  254 bits (650), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 128/208 (61%), Positives = 164/208 (78%), Gaps = 1/208 (0%)

Query: 14  WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAI 73
           W+ KL  +H+QR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI PS+DL T++ RI IR+ I
Sbjct: 15  WMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMI 74

Query: 74  QNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ 133
             G+IQEA AL+N L+PELLD +RY+YFHLQQ HL+ELIR+ + E AL FAQ QL+E G+
Sbjct: 75  LKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGE 134

Query: 134 SDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLL 193
              + L E+ERT+ALLAF  P +SPFGDLLN   RQKV S++N A+L  E+ EST P+L 
Sbjct: 135 ESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST-PKLA 193

Query: 194 NLLKIILWSQGELDKKKIEYPKMRAFSQ 221
            LLK++LW+Q ELD+KK++YPKM   S+
Sbjct: 194 KLLKLLLWAQNELDQKKVKYPKMTDLSK 221

Bos taurus (taxid: 9913)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/208 (61%), Positives = 163/208 (78%), Gaps = 1/208 (0%)

Query: 14  WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAI 73
           W+ KL  +HIQR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI PS+DL T++ RI IR+ I
Sbjct: 15  WMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMI 74

Query: 74  QNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ 133
             G+IQEA +L+N L+PELLD +RY+YFHLQQ HL+ELIR+ + E AL FAQ QL+E G+
Sbjct: 75  LKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGE 134

Query: 134 SDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLL 193
              + L E+ERT+ALLAF  P  SPFGDLLN   RQKV S++N A+L  E+ EST P+L 
Sbjct: 135 ESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST-PKLA 193

Query: 194 NLLKIILWSQGELDKKKIEYPKMRAFSQ 221
            LLK++LW+Q ELD+KK++YPKM   S+
Sbjct: 194 KLLKLLLWAQNELDQKKVKYPKMTDLSK 221

Gallus gallus (taxid: 9031)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score =  252 bits (643), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 127/208 (61%), Positives = 163/208 (78%), Gaps = 1/208 (0%)

Query: 14  WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAI 73
           W+ KL  +H+QR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI PS+DL T++ RI IR+ I
Sbjct: 15  WMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMI 74

Query: 74  QNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ 133
             G+IQEA AL+N L+PELLD +RY+YFHLQQ HL+ELIR+ + E AL FAQ QL+E G+
Sbjct: 75  LKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGE 134

Query: 134 SDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLL 193
              + L E+ERT+ALLAF  P  SPFGDLL+   RQKV S++N A+L  E+ EST P+L 
Sbjct: 135 ESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST-PKLA 193

Query: 194 NLLKIILWSQGELDKKKIEYPKMRAFSQ 221
            LLK++LW+Q ELD+KK++YPKM   S+
Sbjct: 194 KLLKLLLWAQNELDQKKVKYPKMTDLSK 221

Homo sapiens (taxid: 9606)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score =  251 bits (642), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 127/208 (61%), Positives = 163/208 (78%), Gaps = 1/208 (0%)

Query: 14  WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAI 73
           W+ KL  +H+QR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI PS+DL T++ RI IR+ I
Sbjct: 15  WMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMI 74

Query: 74  QNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ 133
             G+IQEA AL+N L+PELLD +RY+YFHLQQ HL+ELIR+ + E AL FAQ QL+E G+
Sbjct: 75  LKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGE 134

Query: 134 SDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLL 193
              + L E+ERT+ALLAF  P  SPFGDLL+   RQKV S++N A+L  E+ EST P+L 
Sbjct: 135 ESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST-PKLA 193

Query: 194 NLLKIILWSQGELDKKKIEYPKMRAFSQ 221
            LLK++LW+Q ELD+KK++YPKM   S+
Sbjct: 194 KLLKLLLWAQNELDQKKVKYPKMTDLSK 221

Mus musculus (taxid: 10090)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score =  247 bits (631), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 166/212 (78%), Gaps = 1/212 (0%)

Query: 10  SEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMI 69
           +++ W++KL  +HIQR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI P++DL++++ RI I
Sbjct: 11  TKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVDLDSLDERIKI 70

Query: 70  RDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129
           R+ +  G+IQEA AL+N L+PELLD +RY+YFHLQQ HL+ELIR  + E AL FAQ QL+
Sbjct: 71  REMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQLA 130

Query: 130 ESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTS 189
           E G+   + L E+ERT+ALLAF  P  SPFGDLLN   RQKV S++N A+L  E+ EST 
Sbjct: 131 EQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST- 189

Query: 190 PRLLNLLKIILWSQGELDKKKIEYPKMRAFSQ 221
           P+L  LLK++LW+Q ELD+KK++Y +M   S+
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYSRMTDLSK 221

Danio rerio (taxid: 7955)

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 163/212 (76%), Gaps = 2/212 (0%)

Query: 5   AEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTME 64
           AE+ + E+ W+ K+  +  QR++MN+LIM+YLVTEG+KEAAEKF+ ESG  P+  L++++
Sbjct: 4   AEEVNREE-WMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLD 62

Query: 65  NRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFA 124
           +RI IR+A+Q G +++A ++ N+L P++LD+++ +YFHLQQ  L+ELIRE  IE A+ FA
Sbjct: 63  DRIKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFA 122

Query: 125 QEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEH 184
           Q Q SE GQ     L ELE+TMALLAF  P  SPFGDLL+ + RQKVAS+LN AIL+ E 
Sbjct: 123 QGQFSEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAILEAE- 181

Query: 185 HESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
           H+ T P+L N+LK++LW+Q EL+ KK+++PKM
Sbjct: 182 HKKTQPKLANVLKLLLWAQDELEGKKVKFPKM 213

Nematostella vectensis (taxid: 45351)

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score =  191 bits (486), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 145/215 (67%), Gaps = 2/215 (0%)

Query: 2   SHGAEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLN 61
           S+  ++  S   W +KL  ++I +SD+NKL+MNYLV EG++EAA KFQ+ES    ++DL 
Sbjct: 7   SNAQKKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLA 66

Query: 62  TMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEAL 121
           ++ +R+ IR AIQ G +++   +VN+L PE+LD +  +YFHLQQ  L+ELIR+    EAL
Sbjct: 67  SIADRMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEAL 126

Query: 122 HFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILK 181
            FAQ++L+  G+ +   L ELE+T++LL F +   SP   LL+ + RQK A +LN+AIL 
Sbjct: 127 KFAQDELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAIL- 185

Query: 182 MEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
           +   +   P+L  +LK++ W+Q +LD K I YPK+
Sbjct: 186 LSQSQDKDPKLPTILKLLKWAQTQLDSKCI-YPKI 219

Dictyostelium discoideum (taxid: 44689)

>sp|Q10446|YDED_SCHPO Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.13 PE=4 SV=1

 Score =  102 bits (253), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 117/213 (54%), Gaps = 11/213 (5%)

Query: 14  WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAI 73
           W  + +++HI  SD+N LI++YLV +G +EAA+ F +E+ IT       ++ R+ I + I
Sbjct: 22  WEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICELI 81

Query: 74  QNGRIQEATALVNELYPELLDNDR---YIYFHLQQLHLLELIRENK------IEEALHFA 124
           ++G I  A   +NEL PE+LD +    +    L+ L L+  + E K      +E  L+FA
Sbjct: 82  KSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLNFA 141

Query: 125 QEQLSESGQSDPDILNELERTMALLAFGEPMNSP-FGDLLNQAHRQKVASQLNTAILKME 183
            E L+    S+   LN LE TM+LL F     SP   ++LN + R++VA+  N +ILK +
Sbjct: 142 HENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILKSQ 201

Query: 184 HHESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
              + S RLL+L+    W + E  +  IE  K 
Sbjct: 202 GLSNES-RLLSLVNFERWCEKEAQRNSIEVQKF 233

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6C435|FYV10_YARLI Protein FYV10 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FYV10 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 16/160 (10%)

Query: 6   EQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMEN 65
           +Q  +EK WL         R+ + +L+ +Y + +GF E A+ F Q  GIT  +D+  ++ 
Sbjct: 119 KQKETEKKWL---------RTRLERLLTDYFLRQGFSETAKSFAQNRGITSLVDVTILDQ 169

Query: 66  RIMIRDAI-QNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFA 124
            I +  ++ Q     E  A  +E    L      + F ++  H +EL++  ++E+AL + 
Sbjct: 170 CISVETSLRQRHSTAECLAWCSENRSFLRKTRSSLEFEVRLQHYVELVKSGRVEDALKYC 229

Query: 125 QEQLSESGQSDPDI-LNELERTMALLAFGEPM-NSPFGDL 162
           Q  LS++     DI L E+++   LLAF      SP+ DL
Sbjct: 230 QRFLSKNA----DIHLREIQQAAGLLAFPPGTEGSPYKDL 265

Involved in the proteasome-dependent degradation of fructose-1,6-bisphosphatase.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q5R532|MAEA_PONAB Macrophage erythroblast attacher OS=Pongo abelii GN=MAEA PE=2 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 3   HGAEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNT 62
           H ++Q ++   W         +R  M+++++ +L+  G+   A K  ++SGI   +++  
Sbjct: 109 HSSDQPAAASVW---------KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIEDLVNIEM 159

Query: 63  MENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALH 122
                 + ++++        A  ++    L      + F L+    +ELIR+NK  +A+ 
Sbjct: 160 FLTAKEVEESLERRETATCLAWCHDNKSRLRKMKSCLEFSLRIQEFIELIRQNKRLDAVR 219

Query: 123 FAQEQLSESGQSDPDILNELERTMALLAFGEPMN-SPFGDLLNQA 166
            A++  S++  S    L+E+ + M +LAF    + SP+ DLL+ A
Sbjct: 220 HARKHFSQAEGSQ---LDEVRQAMGMLAFPPDTHISPYKDLLDPA 261

Plays a role in erythroblast enucleation and in the development of the mature macrophages. Mediates the attachment of erythroid cell to mature macrophages, in correlation with the presence of MAEA at cell surface of mature macrophages; This MAEA-mediated contact inhibits erythroid cells apoptosis. Participates to erythroblastic island formation, which is the functional unit of definitive erythropoiesis. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
242007634	229	protein C20orf11, putative [Pediculus hu	0.681	0.943	0.714	6e-88
157104359	228	hypothetical protein AaeL_AAEL004052 [Ae	0.640	0.890	0.719	2e-85
156542666	230	PREDICTED: protein C20orf11-like [Nasoni	0.662	0.913	0.725	1e-83
307198745	230	Protein C20orf11 [Harpegnathos saltator]	0.681	0.939	0.706	3e-83
58378948	228	AGAP000951-PB [Anopheles gambiae str. PE	0.637	0.885	0.700	6e-83
170047134	228	conserved hypothetical protein [Culex qu	0.681	0.947	0.658	4e-82
383859233	230	PREDICTED: protein C20orf11-like [Megach	0.652	0.9	0.721	6e-82
350411293	230	PREDICTED: protein C20orf11-like [Bombus	0.681	0.939	0.692	7e-81
307188507	230	Protein C20orf11 [Camponotus floridanus]	0.640	0.882	0.720	7e-81
328783780	224	PREDICTED: protein C20orf11-like isoform	0.681	0.964	0.692	8e-81

>gi|242007634|ref|XP_002424638.1| protein C20orf11, putative [Pediculus humanus corporis] gi|212508104|gb|EEB11900.1| protein C20orf11, putative [Pediculus humanus corporis]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/217 (71%), Positives = 193/217 (88%), Gaps = 1/217 (0%)

Query: 1   MSHGAEQSS-SEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD 59
           MS   +Q + S+  W+N+LE++HIQRSD+NKLIMNYLVTEGFKEAAEKFQQESGI+P   
Sbjct: 1   MSFSEKQENISKDDWMNRLESLHIQRSDINKLIMNYLVTEGFKEAAEKFQQESGISPGTA 60

Query: 60  LNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEE 119
           L++++ RI IRDAIQNG IQEATA+VNEL+PELLD+DRY+YFHLQQLHL+ELIR NK+EE
Sbjct: 61  LDSLDERIKIRDAIQNGAIQEATAMVNELHPELLDSDRYLYFHLQQLHLIELIRANKLEE 120

Query: 120 ALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAI 179
           ALHFAQEQLSE+G+SDP+ L ELERT+ALLAF EP++SPF DLL  +HRQK+AS+LN AI
Sbjct: 121 ALHFAQEQLSEAGESDPNALAELERTLALLAFEEPLSSPFSDLLQPSHRQKIASELNAAI 180

Query: 180 LKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
           LKME+ EST+P+L NLLK+ILW+Q ELDKK+I++P++
Sbjct: 181 LKMENRESTTPKLSNLLKVILWAQDELDKKRIKFPRL 217

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104359|ref|XP_001648371.1| hypothetical protein AaeL_AAEL004052 [Aedes aegypti] gi|108880355|gb|EAT44580.1| AAEL004052-PA [Aedes aegypti]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 182/203 (89%)

Query: 14  WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAI 73
           W ++LET   ++ D+NKLIMNYLVTEGFKEAAEKFQ ESG+ PS+DL++++NRI+IR+A+
Sbjct: 15  WQSRLETFPFKQDDINKLIMNYLVTEGFKEAAEKFQAESGVEPSVDLSSLDNRILIREAV 74

Query: 74  QNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ 133
           QNGRIQEAT LVN+L+PELLDNDRY+YFHLQQLHL+ELIR  KIEEAL FAQ Q+SE+G+
Sbjct: 75  QNGRIQEATHLVNQLHPELLDNDRYLYFHLQQLHLIELIRAGKIEEALTFAQTQISEAGE 134

Query: 134 SDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLL 193
           S+P++LNELERT+ALLAF +P NSPF DLL+Q HRQKVAS+LN AILKMEH E +SPR++
Sbjct: 135 SNPEVLNELERTLALLAFEKPQNSPFADLLDQTHRQKVASELNAAILKMEHQEQSSPRMI 194

Query: 194 NLLKIILWSQGELDKKKIEYPKM 216
           N+LK+ILW+Q ELDKK ++YPKM
Sbjct: 195 NVLKLILWAQAELDKKNVKYPKM 217

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542666|ref|XP_001600429.1| PREDICTED: protein C20orf11-like [Nasonia vitripennis]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 183/211 (86%), Gaps = 1/211 (0%)

Query: 7   QSSSEKTWLNKLET-IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMEN 65
           +S S+  W+ KLE   HIQR  MN LIMNYLVTEGFKEAAEKFQQESG+ P+++LN++++
Sbjct: 8   ESMSKDEWMAKLEEGSHIQRVQMNNLIMNYLVTEGFKEAAEKFQQESGVGPTVELNSLDD 67

Query: 66  RIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQ 125
           RI IRDAIQNGRI+EA  LVN+L+PELLDNDRY++FHLQQLHL+ELIR  +IEEAL FAQ
Sbjct: 68  RIRIRDAIQNGRIEEAKDLVNQLHPELLDNDRYLHFHLQQLHLIELIRTGRIEEALQFAQ 127

Query: 126 EQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHH 185
           EQLSE+G+SD +IL+ELERT+ALLAF EP  SPF DLL+  HRQK+AS+LN AILKMEH 
Sbjct: 128 EQLSEAGESDENILSELERTLALLAFDEPHKSPFSDLLHPTHRQKIASELNAAILKMEHQ 187

Query: 186 ESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
           ESTSPRL NLLK+ILW+Q ELDKKK++YPKM
Sbjct: 188 ESTSPRLNNLLKMILWAQDELDKKKVKYPKM 218

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198745|gb|EFN79548.1| Protein C20orf11 [Harpegnathos saltator]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 154/218 (70%), Positives = 186/218 (85%), Gaps = 2/218 (0%)

Query: 1   MSHGAEQSS-SEKTWLNKL-ETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSL 58
           MS   +Q S S+  W+ +L E  H+QR  MN LIMNYLVTEGFKEAAEKFQQESG+ P++
Sbjct: 1   MSFPEKQDSISKDEWVARLKEGFHMQRVSMNNLIMNYLVTEGFKEAAEKFQQESGVGPTV 60

Query: 59  DLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIE 118
           +L+++++RI IRDAIQNGRIQEAT LVN+L+PELLDNDRY+YFHLQQLHL+ELIR  +IE
Sbjct: 61  ELSSLDDRIRIRDAIQNGRIQEATDLVNQLHPELLDNDRYLYFHLQQLHLIELIRTGRIE 120

Query: 119 EALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTA 178
           EAL FAQ++LSE+G+SD +IL ELERT+ALLAF EP  SPF DLL+  HRQK+AS+LN A
Sbjct: 121 EALQFAQDKLSEAGESDDNILCELERTLALLAFDEPHKSPFSDLLHPTHRQKIASELNAA 180

Query: 179 ILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
           ILKMEH ESTSPRL NLLK+ILW+Q ELDKKK++YPKM
Sbjct: 181 ILKMEHRESTSPRLNNLLKMILWAQDELDKKKVKYPKM 218

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58378948|ref|XP_309141.2| AGAP000951-PB [Anopheles gambiae str. PEST] gi|158287089|ref|XP_001688166.1| AGAP000951-PA [Anopheles gambiae str. PEST] gi|347964823|ref|XP_003437152.1| AGAP000951-PC [Anopheles gambiae str. PEST] gi|55245016|gb|EAA04925.2| AGAP000951-PB [Anopheles gambiae str. PEST] gi|157019740|gb|EDO64476.1| AGAP000951-PA [Anopheles gambiae str. PEST] gi|333466494|gb|EGK96272.1| AGAP000951-PC [Anopheles gambiae str. PEST]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 145/207 (70%), Positives = 181/207 (87%)

Query: 10  SEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMI 69
           S++ W ++LET   ++ D+NKLIMNYLVTEGFKEAAEKFQ ESG+TPS+DLN+++NRI I
Sbjct: 11  SKEEWQSRLETFPFKQDDINKLIMNYLVTEGFKEAAEKFQAESGVTPSVDLNSLDNRIQI 70

Query: 70  RDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129
           R+A+QNG IQEAT LVN+L+PELLDNDRY+YFHLQQLHL+ELIR  KIEEAL FAQ Q+S
Sbjct: 71  REAVQNGFIQEATHLVNQLHPELLDNDRYLYFHLQQLHLIELIRAGKIEEALTFAQTQIS 130

Query: 130 ESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTS 189
           E+G+S+P++LNELERT+ALLAF  P +SPF DLL  +HRQKVAS+LN AILKME  E +S
Sbjct: 131 EAGESNPEVLNELERTLALLAFETPQHSPFADLLGHSHRQKVASELNAAILKMEQQEQSS 190

Query: 190 PRLLNLLKIILWSQGELDKKKIEYPKM 216
           PR++N+LK+ILW+Q ELDKK ++YPKM
Sbjct: 191 PRMINILKLILWAQTELDKKNVKYPKM 217

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047134|ref|XP_001851089.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167869652|gb|EDS33035.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 143/217 (65%), Positives = 183/217 (84%), Gaps = 1/217 (0%)

Query: 1   MSHGAEQSSSEKTWLNKLETIH-IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD 59
           MS   +   S + W ++LET    ++ D+NKLIMNYLVTEGFKEAAEKFQ ESG+ PS+D
Sbjct: 1   MSCNDKGDVSREDWQSRLETFQSFKQDDINKLIMNYLVTEGFKEAAEKFQAESGVEPSVD 60

Query: 60  LNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEE 119
           L++++NRI+IR+A+QNGR+QEA   VN+L+PELLDNDRY+YFHLQQLHL+ELIR  KIE+
Sbjct: 61  LSSLDNRILIREAVQNGRVQEAVRQVNQLHPELLDNDRYLYFHLQQLHLIELIRAGKIED 120

Query: 120 ALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAI 179
           AL FAQ Q+SE+G+S+P++LNELERT+ALLAF +P  SPF DLL+Q HRQKVAS+LN AI
Sbjct: 121 ALTFAQTQISEAGESNPEVLNELERTLALLAFEQPQKSPFADLLDQTHRQKVASELNAAI 180

Query: 180 LKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
           LK EH E +SPR++N+LK+ILW+Q ELDKK ++YPKM
Sbjct: 181 LKTEHQEQSSPRMINVLKLILWAQAELDKKNVKYPKM 217

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859233|ref|XP_003705100.1| PREDICTED: protein C20orf11-like [Megachile rotundata]

 Score =  310 bits (794), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 150/208 (72%), Positives = 180/208 (86%), Gaps = 1/208 (0%)

Query: 10  SEKTWLNKLE-TIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIM 68
           S+  W+ KLE   H QR  MN LIMNYLVTEGFKEAAEKFQQESG+ P++DL+++++RI 
Sbjct: 11  SKDEWVAKLEENSHTQRVSMNNLIMNYLVTEGFKEAAEKFQQESGVEPTVDLSSLDDRIR 70

Query: 69  IRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQL 128
           IR+AIQNGRIQEAT LVN+L+PELLDNDRY+YFHLQQLHL+ELIR  KIEEAL FAQ++L
Sbjct: 71  IREAIQNGRIQEATNLVNQLHPELLDNDRYLYFHLQQLHLIELIRTGKIEEALQFAQDRL 130

Query: 129 SESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHEST 188
           SE+G+SD +IL ELERT+ALLAF EP  SP+ DLL+  HRQK+AS+LN AILKMEH EST
Sbjct: 131 SEAGESDDNILCELERTLALLAFDEPHKSPYSDLLHPTHRQKIASELNAAILKMEHKEST 190

Query: 189 SPRLLNLLKIILWSQGELDKKKIEYPKM 216
           SPRL NLLK+ILW+Q EL+KKK++YPKM
Sbjct: 191 SPRLNNLLKMILWAQDELEKKKVKYPKM 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411293|ref|XP_003489301.1| PREDICTED: protein C20orf11-like [Bombus impatiens]

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 185/218 (84%), Gaps = 2/218 (0%)

Query: 1   MSHGAEQSS-SEKTWLNKLE-TIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSL 58
           MS+  +Q + ++  W+ KLE   + QR  MN LIMNYLVTEGFKEAAEKFQQESG+ P++
Sbjct: 1   MSYPEKQDNITKDEWVAKLEENSYTQRVSMNNLIMNYLVTEGFKEAAEKFQQESGVEPTV 60

Query: 59  DLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIE 118
           DL+++++RI IR+AIQNGRIQEAT LVN+L+PELLDNDRY+YFHLQQLHL+ELIR  KIE
Sbjct: 61  DLSSLDDRIRIREAIQNGRIQEATDLVNQLHPELLDNDRYLYFHLQQLHLIELIRTGKIE 120

Query: 119 EALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTA 178
           EAL FAQ++LSE+G+SD  IL ELERT+ALLAF EP  SP+ DLL+  HRQK+AS+LN A
Sbjct: 121 EALQFAQDRLSEAGESDDIILCELERTLALLAFDEPHKSPYSDLLHPTHRQKIASELNAA 180

Query: 179 ILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
           ILKMEH ESTSPRL NLLK+ILW+Q EL+KKK++YPKM
Sbjct: 181 ILKMEHKESTSPRLNNLLKMILWAQDELEKKKVKYPKM 218

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188507|gb|EFN73244.1| Protein C20orf11 [Camponotus floridanus]

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 147/204 (72%), Positives = 178/204 (87%), Gaps = 1/204 (0%)

Query: 14  WLNKLE-TIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDA 72
           W+ KLE + ++Q+  MN LIMNYLVTEGFKEAAEKFQQESG+ P+++L++++ RI IRDA
Sbjct: 16  WVVKLEESAYMQKLSMNNLIMNYLVTEGFKEAAEKFQQESGVGPTVELSSLDERIRIRDA 75

Query: 73  IQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESG 132
           IQNGRIQEAT LVN+L+PELLDNDRY+YFHLQQLHL+ELIR  ++EEAL FAQ+QLSE+G
Sbjct: 76  IQNGRIQEATNLVNQLHPELLDNDRYLYFHLQQLHLIELIRTGRVEEALQFAQDQLSEAG 135

Query: 133 QSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRL 192
           +SD +IL ELERT+ALLAF EP  SPF DLL+  HRQK+AS+LN AILKMEH ESTSPRL
Sbjct: 136 ESDDNILCELERTLALLAFDEPHKSPFSDLLHPTHRQKIASELNAAILKMEHRESTSPRL 195

Query: 193 LNLLKIILWSQGELDKKKIEYPKM 216
            NLLK+ILW+Q ELDKKK++Y KM
Sbjct: 196 SNLLKMILWAQDELDKKKVKYAKM 219

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783780|ref|XP_392965.3| PREDICTED: protein C20orf11-like isoform 1 [Apis mellifera] gi|380020633|ref|XP_003694186.1| PREDICTED: protein C20orf11-like [Apis florea]

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 185/218 (84%), Gaps = 2/218 (0%)

Query: 1   MSHGAEQSS-SEKTWLNKLE-TIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSL 58
           MS+  +Q + ++  W+ KLE   + QR  MN LIMNYLVTEGFKEAAEKFQQESG+ P++
Sbjct: 1   MSYPEKQDNITKDEWVAKLEENSYTQRVSMNNLIMNYLVTEGFKEAAEKFQQESGVEPTV 60

Query: 59  DLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIE 118
           DL+++++RI IR+AIQNGRIQEAT LVN+L+PELLDNDRY+YFHLQQLHL+ELIR  KIE
Sbjct: 61  DLSSLDDRIRIREAIQNGRIQEATDLVNQLHPELLDNDRYLYFHLQQLHLIELIRTGKIE 120

Query: 119 EALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTA 178
           EAL FAQ++LSE+G+SD  IL ELERT+ALLAF EP  SP+ DLL+  HRQK+AS+LN A
Sbjct: 121 EALQFAQDRLSEAGESDDVILCELERTLALLAFDEPHKSPYSDLLHPTHRQKIASELNAA 180

Query: 179 ILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
           ILKMEH ESTSPRL NLLK+ILW+Q EL+KKK++YPKM
Sbjct: 181 ILKMEHKESTSPRLNNLLKMILWAQDELEKKKVKYPKM 218

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.652	0.907	0.615	8.2e-67
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.694	0.964	0.590	1.1e-66
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.694	0.964	0.585	2.2e-66
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.694	0.964	0.585	2.8e-66
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.694	0.88	0.567	4.1e-65
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.659	0.860	0.464	9.5e-50
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.671	0.934	0.441	1.6e-45
TAIR|locus:2137926	224	AT4G09300 "AT4G09300" [Arabido	0.646	0.915	0.394	1.2e-33
TAIR|locus:2197404	277	AT1G11110 "AT1G11110" [Arabido	0.618	0.707	0.368	4.9e-30
POMBASE|SPAC12B10.13	240	SPAC12B10.13 "proteasome-depen	0.675	0.891	0.368	1.3e-29

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 128/208 (61%), Positives = 164/208 (78%)

Query:    14 WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAI 73
             W+ KL  +H+QR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI PS+DL T++ RI IR+ I
Sbjct:    15 WMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMI 74

Query:    74 QNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ 133
               G+IQEA AL+N L+PELLD +RY+YFHLQQ HL+ELIR+ + E AL FAQ QL+E G+
Sbjct:    75 LKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGE 134

Query:   134 SDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLL 193
                + L E+ERT+ALLAF  P +SPFGDLLN   RQKV S++N A+L  E+ EST P+L 
Sbjct:   135 ESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST-PKLA 193

Query:   194 NLLKIILWSQGELDKKKIEYPKMRAFSQ 221
              LLK++LW+Q ELD+KK++YPKM   S+
Sbjct:   194 KLLKLLLWAQNELDQKKVKYPKMTDLSK 221

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 131/222 (59%), Positives = 168/222 (75%)

Query:     1 MSHGAEQSSSEKT-WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD 59
             MS+  +     K  W+ KL  +HIQR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI PS+D
Sbjct:     1 MSYAEKPDEITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD 60

Query:    60 LNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEE 119
             L T++ RI IR+ I  G+IQEA +L+N L+PELLD +RY+YFHLQQ HL+ELIR+ + E 
Sbjct:    61 LETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEA 120

Query:   120 ALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAI 179
             AL FAQ QL+E G+   + L E+ERT+ALLAF  P  SPFGDLLN   RQKV S++N A+
Sbjct:   121 ALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAV 180

Query:   180 LKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQ 221
             L  E+ EST P+L  LLK++LW+Q ELD+KK++YPKM   S+
Sbjct:   181 LDYENREST-PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSK 221

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 130/222 (58%), Positives = 168/222 (75%)

Query:     1 MSHGAEQSSSEKT-WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD 59
             MS+  +     K  W+ KL  +H+QR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI PS+D
Sbjct:     1 MSYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD 60

Query:    60 LNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEE 119
             L T++ RI IR+ I  G+IQEA AL+N L+PELLD +RY+YFHLQQ HL+ELIR+ + E 
Sbjct:    61 LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEA 120

Query:   120 ALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAI 179
             AL FAQ QL+E G+   + L E+ERT+ALLAF  P  SPFGDLL+   RQKV S++N A+
Sbjct:   121 ALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAV 180

Query:   180 LKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQ 221
             L  E+ EST P+L  LLK++LW+Q ELD+KK++YPKM   S+
Sbjct:   181 LDYENREST-PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSK 221

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 130/222 (58%), Positives = 168/222 (75%)

Query:     1 MSHGAEQSSSEKT-WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD 59
             MS+  +     K  W+ KL  +H+QR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI PS+D
Sbjct:     1 MSYAEKPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD 60

Query:    60 LNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEE 119
             L T++ RI IR+ I  G+IQEA AL+N L+PELLD +RY+YFHLQQ HL+ELIR+ + E 
Sbjct:    61 LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEA 120

Query:   120 ALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAI 179
             AL FAQ QL+E G+   + L E+ERT+ALLAF  P  SPFGDLL+   RQKV S++N A+
Sbjct:   121 ALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAV 180

Query:   180 LKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQ 221
             L  E+ EST P+L  LLK++LW+Q ELD+KK++YPKM   S+
Sbjct:   181 LDYENREST-PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSK 221

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 126/222 (56%), Positives = 171/222 (77%)

Query:     1 MSHGAE-QSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD 59
             MS+  + +  +++ W++KL  +HIQR+DMN+LIMNYLVTEGFKEAAEKF+ ESGI P++D
Sbjct:    23 MSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVD 82

Query:    60 LNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEE 119
             L++++ RI IR+ +  G+IQEA AL+N L+PELLD +RY+YFHLQQ HL+ELIR  + E 
Sbjct:    83 LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEA 142

Query:   120 ALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAI 179
             AL FAQ QL+E G+   + L E+ERT+ALLAF  P  SPFGDLLN   RQKV S++N A+
Sbjct:   143 ALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAV 202

Query:   180 LKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQ 221
             L  E+ EST P+L  LLK++LW+Q ELD+KK++Y +M   S+
Sbjct:   203 LDYENREST-PKLAKLLKLLLWAQNELDQKKVKYSRMTDLSK 243

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 98/211 (46%), Positives = 148/211 (70%)

Query:    10 SEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMI 69
             + + W  KL  + +++ DMN L+MN+LVTEG+ EAAEKFQ+ESG  P +DL T+ +R+ +
Sbjct:    26 TREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEIDLATITDRMAV 85

Query:    70 RDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129
             + A+QNG +++A   VN+L PE+LD +  ++FHLQQ  L+ELIR+ K EEAL FAQE+L+
Sbjct:    86 KKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELA 145

Query:   130 ESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTS 189
               G+ +   L ELE+T+ALL F +    P  +LL+ +HR K AS++N AIL  + HE   
Sbjct:   146 PRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHEK-D 204

Query:   190 PRLLNLLKIILWSQGELDKKKIEYPKMRAFS 220
             P+L +LLK+++W+Q +LD+K + YP +   S
Sbjct:   205 PKLPSLLKMLIWAQTQLDEKAV-YPHINDLS 234

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 95/215 (44%), Positives = 145/215 (67%)

Query:     2 SHGAEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLN 61
             S+  ++  S   W +KL  ++I +SD+NKL+MNYLV EG++EAA KFQ+ES    ++DL 
Sbjct:     7 SNAQKKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLA 66

Query:    62 TMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEAL 121
             ++ +R+ IR AIQ G +++   +VN+L PE+LD +  +YFHLQQ  L+ELIR+    EAL
Sbjct:    67 SIADRMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEAL 126

Query:   122 HFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILK 181
              FAQ++L+  G+ +   L ELE+T++LL F +   SP   LL+ + RQK A +LN+AIL 
Sbjct:   127 KFAQDELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAIL- 185

Query:   182 MEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKM 216
             +   +   P+L  +LK++ W+Q +LD K I YPK+
Sbjct:   186 LSQSQDKDPKLPTILKLLKWAQTQLDSKCI-YPKI 219

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2137926 AT4G09300 "AT4G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 84/213 (39%), Positives = 128/213 (60%)

Query:    10 SEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMI 69
             + + W +KL  + I   DMN+L+MN LV EG++EAAEKF++ES   P  DL +M  R+ +
Sbjct:     9 TSEDWESKLSDVEILIEDMNRLVMNLLVAEGYREAAEKFKEESITMPEEDLASMNERLEV 68

Query:    70 RDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLS 129
               AI++  +++A   +N L PE++       FHL Q  L+ELIRE K EEA+ FAQE+L+
Sbjct:    69 IKAIESRNLEDAIEKLNALNPEIIKTS----FHLHQQMLIELIREKKTEEAVAFAQEKLA 124

Query:   130 ESGQSDPDILNELERTMALLAF-GEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHEST 188
                + +  +  ELE+T+ +L   G P N P  +L + +   + AS +N AI   +  E  
Sbjct:   125 PLAEENEALQRELEKTVCILVTEGLP-NCPSRELFHNSQWIRTASHVNEAIHTSQTGEK- 182

Query:   189 SPRLLNLLKIILWSQGELDKKKIE-YPKMRAFS 220
              P L  LLK ++W+Q +LD+K +  YP+M  FS
Sbjct:   183 GPELERLLKELIWTQNQLDEKTVYVYPRMNDFS 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197404 AT1G11110 "AT1G11110" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 76/206 (36%), Positives = 128/206 (62%)

Query:    14 WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAI 73
             W   L T  I++ DMN+L+MN+LV EG+ EA EKFQ+ESG T  + + ++ +R+ ++  I
Sbjct:    61 WEQYLTTAEIRKEDMNRLVMNFLVVEGYLEAVEKFQKESG-TKQVGVASISDRLAVKRDI 119

Query:    74 QNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIREN-KIEEALHFAQEQLSESG 132
             ++G +++A   +N + PE+L  +    F L Q   +E IR    I+E  +FA+++L    
Sbjct:   120 ESGDLEDAVEKLNAINPEILKTN----FSLNQQRFIERIRIGVTIKETFNFAEKELKPLV 175

Query:   133 QSDPDILNELERTMALLAFGEPMNSPFGD--LLNQAHRQKVASQLNTAILKMEHHESTSP 190
             + +   L ELE+TMA+L F +  + P  +  LL+ +   K A+++N AIL  +      P
Sbjct:   176 EQNLAFLEELEKTMAILRFRDLPDIPEAERELLDNSRWFKTAAEVNAAILTSQTGLKC-P 234

Query:   191 RLLNLLKIILWSQGELDKKKIEYPKM 216
             +LL+LLK++ W+Q +LD+K +EYP+M
Sbjct:   235 KLLDLLKMLTWTQNQLDEK-VEYPRM 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC12B10.13 SPAC12B10.13 "proteasome-dependent catabolite inactivation protein, ubiquitin ligase complex subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 83/225 (36%), Positives = 126/225 (56%)

Query:     1 MSHGAEQSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDL 60
             +S     SS  + W  + +++HI  SD+N LI++YLV +G +EAA+ F +E+ IT     
Sbjct:     9 ISMSGSSSSDAEQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIP 68

Query:    61 NTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRE---NK- 116
               ++ R+ I + I++G I  A   +NEL PE+LD +  + F L +L LLELIRE    K 
Sbjct:    69 PYVKERLEICELIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKD 128

Query:   117 -----IEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSP-FGDLLNQAHRQK 170
                  +E  L+FA E L+    S+   LN LE TM+LL F     SP   ++LN + R++
Sbjct:   129 TSDLAVERCLNFAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRER 188

Query:   171 VASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPK 215
             VA+  N +ILK +   + S RLL+L+    W + E  +  IE  K
Sbjct:   189 VANLANVSILKSQGLSNES-RLLSLVNFERWCEKEAQRNSIEVQK 232

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0034657 "GID complex" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0045721 "negative regulation of gluconeogenesis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NWU2	GID8_HUMAN	No assigned EC number	0.6105	0.6529	0.9078	yes	N/A
Q54X16	GID8_DICDI	No assigned EC number	0.4418	0.6719	0.9342	yes	N/A
Q9D7M1	GID8_MOUSE	No assigned EC number	0.6105	0.6529	0.9078	yes	N/A
Q32L52	GID8_BOVIN	No assigned EC number	0.6153	0.6529	0.9078	yes	N/A
Q5ZKQ7	GID8_CHICK	No assigned EC number	0.6153	0.6529	0.9078	yes	N/A
Q10446	YDED_SCHPO	No assigned EC number	0.3474	0.6372	0.8416	yes	N/A
Q6PC55	GID8_DANRE	No assigned EC number	0.5849	0.6656	0.9254	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	317
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	2e-37
smart00757	99	smart00757, CRA, CT11-RanBPM	1e-22
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	5e-12
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	8e-08
pfam08513	27	pfam08513, LisH, LisH	1e-06

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  129 bits (328), Expect = 2e-37
 Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 4/147 (2%)

Query: 62  TMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEAL 121
             + R  IR+++ NG ++EA    NE  PELL  +  + F L+    +ELIRE KI EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 122 HFAQEQLSESGQSDPDILNELERTMALLAFGEP-MNSPFGDLLNQAHRQKVASQLNTAIL 180
            +A+E L+         L E+++ M LLAF +P  +SP+  LL+ +  +K+A++ N AIL
Sbjct: 61  EYARENLAPFFNE--QHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAIL 118

Query: 181 KMEHHESTSPRLLNLLKIILWSQGELD 207
           K+    S SP L  LLK  L +   L 
Sbjct: 119 KLLGLSSESP-LEILLKAGLSALKTLL 144

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 90.0 bits (224), Expect = 1e-22
 Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 1/99 (1%)

Query: 115 NKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMN-SPFGDLLNQAHRQKVAS 173
            KIEEAL +A+E L+   +     L ELE+TMALLA+ +P   SP+ +LL+ + R+K+A 
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 174 QLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIE 212
           +LN+AIL++ H +S+   L  LL   L +   L +K   
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEKGGV 99

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 62  TMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEE 119
             + R  IR+ I  G   EA   ++ L P LL+ +  + F L++   LEL+R+ K+EE
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 47.4 bits (114), Expect = 8e-08
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITP 56
          I RS++N+LI+ YL+  G++E AE  Q+ESG++ 
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 1e-06
 Identities = 14/27 (51%), Positives = 20/27 (74%)

Query: 26 SDMNKLIMNYLVTEGFKEAAEKFQQES 52
           ++N+LI +YLV  G+KE AE F +ES
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
KOG2817|consensus	394		100.0
KOG2659|consensus	228		100.0
KOG0396|consensus	389		100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	99.96
COG5109	396	Uncharacterized conserved protein, contains RING Z	99.86
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.68
KOG2659|consensus	228		99.34
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.31
KOG0293|consensus	519		98.4
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.19
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.96
KOG1477|consensus	469		97.8
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	96.61
KOG0275|consensus	508		96.09
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	93.87
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	91.02
KOG1333|consensus	241		86.57
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	81.11

>KOG2817|consensus

Probab=100.00  E-value=4.8e-49  Score=370.24  Aligned_cols=243  Identities=19%  Similarity=0.269  Sum_probs=220.6

Q ss_pred             cCCCCHHH-HHHHHHHHHHHhChHHHHHHHHHHhCCCCC--CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCC
Q psy11905         20 TIHIQRSD-MNKLIMNYLVTEGFKEAAEKFQQESGITPS--LDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDND   96 (317)
Q Consensus        20 ~v~~~~~~-Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~--~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~   96 (317)
                      ++..+... ||.+|+.||+|+|+.|+|+.|++|+|+..+  .....|.++++|.++|+.||+++|++|+..++..|.+.+
T Consensus       110 ~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~  189 (394)
T KOG2817|consen  110 SVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS  189 (394)
T ss_pred             CcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc
Confidence            55555554 599999999999999999999999999865  345799999999999999999999999999999999999


Q ss_pred             CcchhhhhHHHHHHHHHhcchH--HHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCC--CCCCcchhccCHHHHHHHH
Q psy11905         97 RYIYFHLQQLHLLELIRENKIE--EALHFAQEQLSESGQSDPDILNELERTMALLAFGE--PMNSPFGDLLNQAHRQKVA  172 (317)
Q Consensus        97 s~LeF~L~~q~fIeLir~~~~~--eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~--~~~spy~~Ll~~~~r~~la  172 (317)
                      |.|+|.||+++|+++++.|...  +||.|||++|+||+..   +.+|||.+|++|.|-.  .+.|||.+++++..|.++.
T Consensus       190 s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~---~~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~  266 (394)
T KOG2817|consen  190 SSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVAD---HLREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELT  266 (394)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccc---hHHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHH
Confidence            9999999999999999998655  9999999999999874   4899999999999865  4789999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCch----------HHHHHHHHH--------HHHhhhhhhccCCCCcccCCcccCCCcceEE--ee
Q psy11905        173 SQLNTAILKMEHHESTSP----------RLLNLLKII--------LWSQGELDKKKIEYPKMRAFSQLCGCHSITG--LS  232 (317)
Q Consensus       173 ~~~n~~il~~~g~~~~~p----------~Le~Llk~~--------~w~~~~l~~~~~elP~ei~l~~~~~~hSvf~--vs  232 (317)
                      .+|.+.+|.++|+|.++|          +||.|+|+.        +|++  .    ++||++|+||.+++|||||+  |+
T Consensus       267 ~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~--~----deLPveIeL~~~~~fHSvF~CPVl  340 (394)
T KOG2817|consen  267 EEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEWNT--K----DELPVEIELGKEYHFHSVFICPVL  340 (394)
T ss_pred             HHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCccc--c----ccCccceeccccccccceeecccc
Confidence            999999999999999888          999999976        4766  3    56999999999999999999  99


Q ss_pred             cccccccccccccccccccchhhhhhhhhHHH--hhccCCC
Q psy11905        233 FTQSSYLLSLVSSTCNAATGRYSIKVALNTAI--LKMEHHE  271 (317)
Q Consensus       233 req~t~~~~~~~~~~~~~~~r~~~~~~~n~~~--~~~~~~~  271 (317)
                      |||+|++||||.+.|||+..|+....-.|...  |||++.+
T Consensus       341 KeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP  381 (394)
T KOG2817|consen  341 KEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP  381 (394)
T ss_pred             hhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence            99999999999999999999999986556655  7887765

>KOG2659|consensus

Probab=100.00  E-value=2.8e-39  Score=287.22  Aligned_cols=213  Identities=51%  Similarity=0.836  Sum_probs=203.3

Q ss_pred             CCCChhHHHHHHhcCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC-CCChhHHHHHHHHHHHHHcCCHHHHHHHH
Q psy11905          7 QSSSEKTWLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITP-SLDLNTMENRIMIRDAIQNGRIQEATALV   85 (317)
Q Consensus         7 ~~~~~~~w~~~~~~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~-~~~~e~~~~r~~I~~~I~~gdi~~Al~w~   85 (317)
                      +.++.++|++++..+.+.+.++|+||++||+++||.|+|+.|++|+|+.+ ..+.+.+.+|.+|+.+|..|+++.||+.+
T Consensus         8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i   87 (228)
T KOG2659|consen    8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV   87 (228)
T ss_pred             ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999997 78999999999999999999999999999


Q ss_pred             HhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCCCCCcchhccCH
Q psy11905         86 NELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQ  165 (317)
Q Consensus        86 ~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~~~spy~~Ll~~  165 (317)
                      +++.|++++.+..|.|.|++|+||||||.|...+||+|||++++|++..++.++.+++++|++|+|.++..||++.++..
T Consensus        88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~  167 (228)
T KOG2659|consen   88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ  167 (228)
T ss_pred             HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhhhhhhccCCCCcccCCc
Q psy11905        166 AHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFS  220 (317)
Q Consensus       166 ~~r~~la~~~n~~il~~~g~~~~~p~Le~Llk~~~w~~~~l~~~~~elP~ei~l~  220 (317)
                      ++|.++|+.+|++|+..+|.. ..|.|+.|+|...|++..+..++...|...++.
T Consensus       168 s~R~kvA~~vN~aiL~~~~~~-~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~  221 (228)
T KOG2659|consen  168 SLRQKVASEVNSAILASQEHE-SEPKLPFLLKLISWAQEELDREKFSEPHFKDLT  221 (228)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHHhHhhccccccCCcc
Confidence            999999999999999999998 899999999999999988887676666665554

>KOG0396|consensus

Probab=100.00  E-value=9.8e-33  Score=257.35  Aligned_cols=234  Identities=19%  Similarity=0.220  Sum_probs=205.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcch
Q psy11905         21 IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIY  100 (317)
Q Consensus        21 v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~Le  100 (317)
                      .+|++..++++|++||.|.||+++|..|.++++++..+|.+.|.+.+.|+++|++|++.|||.||++|+..|.+.+|.||
T Consensus       111 ~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lE  190 (389)
T KOG0396|consen  111 RKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLE  190 (389)
T ss_pred             HHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhh
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCC-CCCCcchhccCHHHHHHHHHHHHHHH
Q psy11905        101 FHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGE-PMNSPFGDLLNQAHRQKVASQLNTAI  179 (317)
Q Consensus       101 F~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~-~~~spy~~Ll~~~~r~~la~~~n~~i  179 (317)
                      |.++.|+|||||+.+++.+||+|||+||+|++.   .+..+++.+||+|+|+. +..++|..+++..+|+.+++.|...+
T Consensus       191 f~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~---~~~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a  267 (389)
T KOG0396|consen  191 FQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAK---SHKSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEA  267 (389)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhh---hhHHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHH
Confidence            999999999999999999999999999999998   56899999999999988 55678999999999999999999999


Q ss_pred             HhhcCCCCCchHHHHHHHHHHHHhh---hhhhccCC----CCccc--------CCcccCCCcceEE--eecccccccccc
Q psy11905        180 LKMEHHESTSPRLLNLLKIILWSQG---ELDKKKIE----YPKMR--------AFSQLCGCHSITG--LSFTQSSYLLSL  242 (317)
Q Consensus       180 l~~~g~~~~~p~Le~Llk~~~w~~~---~l~~~~~e----lP~ei--------~l~~~~~~hSvf~--vsreq~t~~~~~  242 (317)
                      ++++|++ ..|+|-.++....-++.   .+.+.+++    +|++-        +||=...-||..+  +|.+---++|||
T Consensus       268 ~~l~~i~-~~~~L~~~l~~GLsalKTp~c~~~~~~~~~~~CpvC~~~f~~ia~~LPfah~~~S~Lvc~isge~md~~N~P  346 (389)
T KOG0396|consen  268 LKLFGIP-INPALTIYLQAGLSALKTPRCLNDESDNNPNNCPVCCEAFKPIAQALPFAHHAQSRLVCSISGELMDDDNPP  346 (389)
T ss_pred             HHHhCCC-CCcHHHHHHHhhhhhcccccccccccCCCCCCCCCcccccchhhhcCCchhhhhhHHHhhccccccCCCCCc
Confidence            9999999 88999999986532221   11122222    33332        5555556677777  999999999999


Q ss_pred             cccccccccchhhhhh
Q psy11905        243 VSSTCNAATGRYSIKV  258 (317)
Q Consensus       243 ~~~~~~~~~~r~~~~~  258 (317)
                      +...=|.++.-+.+-|
T Consensus       347 ~lfpnG~Vyg~~~L~s  362 (389)
T KOG0396|consen  347 HLFPNGYVYGTKALES  362 (389)
T ss_pred             ccccCceeehhHHHHh
Confidence            9999999998887765

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=99.96  E-value=2e-29  Score=212.87  Aligned_cols=137  Identities=36%  Similarity=0.563  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHH
Q psy11905         63 MENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNEL  142 (317)
Q Consensus        63 ~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~ei  142 (317)
                      |.+|++|+++|++||+++|++|+++++|.|++.++.|+|.|++|+||+||+.|++.+||+|||+++.++..   .+.++|
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l   78 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL   78 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999976654   578999


Q ss_pred             HHHHHHHccCCCCC---CcchhccCHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHh
Q psy11905        143 ERTMALLAFGEPMN---SPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQ  203 (317)
Q Consensus       143 q~lm~lL~y~~~~~---spy~~Ll~~~~r~~la~~~n~~il~~~g~~~~~p~Le~Llk~~~w~~  203 (317)
                      +++|++|+|.++++   +||++++++.+|++||+.||+++|..+|++ ..|.|+.+++...|+.
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~-~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLP-KESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcC-CCCHHHHHHHHHHHHh
Confidence            99999999999886   899999999999999999999999999999 8999999999998875

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=99.86  E-value=7.1e-21  Score=174.25  Aligned_cols=249  Identities=14%  Similarity=0.091  Sum_probs=194.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcc
Q psy11905         21 IHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD-LNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYI   99 (317)
Q Consensus        21 v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~-~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~L   99 (317)
                      ++.+...++.+.-.++.+.|-..-+-.|+.+.|..+... .+.|...+.|.+.|.+.+...-|+|+ +....|.+.++.+
T Consensus        96 f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtes  174 (396)
T COG5109          96 FSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTES  174 (396)
T ss_pred             CccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchh
Confidence            334444556667777778888888888999999886554 47899999999999999999999999 6667777777777


Q ss_pred             hhhhhHHHHH--HHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCCC------C---------------
Q psy11905        100 YFHLQQLHLL--ELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPM------N---------------  156 (317)
Q Consensus       100 eF~L~~q~fI--eLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~~------~---------------  156 (317)
                      ++.|..-...  -++.. ++++|+.|.++.++.|..   .|..+++.+|-.+.+-+..      +               
T Consensus       175 el~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~---kh~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksli  250 (396)
T COG5109         175 ELELYLVSHESLLLIHK-RYDEALRLCFTKLASFVP---KHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLI  250 (396)
T ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HhccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhc
Confidence            7766655544  44444 799999999999999986   5688999999998874421      0               


Q ss_pred             -Cc--chhccCHHHHHHHHHHHHHHHHhhcCCCCCch----------HHHHHHHHH--------HHHhhhhhhccCCCCc
Q psy11905        157 -SP--FGDLLNQAHRQKVASQLNTAILKMEHHESTSP----------RLLNLLKII--------LWSQGELDKKKIEYPK  215 (317)
Q Consensus       157 -sp--y~~Ll~~~~r~~la~~~n~~il~~~g~~~~~p----------~Le~Llk~~--------~w~~~~l~~~~~elP~  215 (317)
                       -|  |-+-++ ..|.++...|.+.+|+..|++.++|          +++.|+|..        .|+.      ..|||+
T Consensus       251 gqPiEdIDkvn-k~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~~l~k~~si~~~kHvdWT~------~~eLP~  323 (396)
T COG5109         251 GQPIEDIDKVN-KSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFLQLSKSGSILFDKHVDWTD------DSELPM  323 (396)
T ss_pred             CCcHHHHHHhh-hhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHHHHHHhhhHHHhhccCccC------CCCCce
Confidence             11  112122 3489999999999999999998777          777777753        7776      357999


Q ss_pred             ccCCcccCCCcceEE--eecccccccccccccccccccchhhhh--hhhhH-HHhhccCCCCCchhHHHHHHH
Q psy11905        216 MRAFSQLCGCHSITG--LSFTQSSYLLSLVSSTCNAATGRYSIK--VALNT-AILKMEHHESTSPRLLNLLKI  283 (317)
Q Consensus       216 ei~l~~~~~~hSvf~--vsreq~t~~~~~~~~~~~~~~~r~~~~--~~~n~-~~~~~~~~~~~~~~l~~l~kl  283 (317)
                      +|-||+.+.|||||.  |+|||+|++||||.+.|||+..+-...  |. |. --|||++.+ ...++.+.+|+
T Consensus       324 eIklp~~~hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~-nG~~~FKCPYCP-~~~~~~~~~rv  394 (396)
T COG5109         324 EIKLPKGRHFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQ-NGVLSFKCPYCP-EMSKYENILRV  394 (396)
T ss_pred             EEecCCcccccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhh-cCcEEeeCCCCC-cchhhhhhhcc
Confidence            999999999999999  999999999999999999999887654  32 33 356888877 56777777664

>smart00757 CRA CT11-RanBPM

Probab=99.68  E-value=3.7e-16  Score=123.28  Aligned_cols=92  Identities=40%  Similarity=0.549  Sum_probs=85.0

Q ss_pred             chHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCC-CCCcchhccCHHHHHHHHHHHHHHHHhhc-CCCCCchHHH
Q psy11905        116 KIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEP-MNSPFGDLLNQAHRQKVASQLNTAILKME-HHESTSPRLL  193 (317)
Q Consensus       116 ~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~-~~spy~~Ll~~~~r~~la~~~n~~il~~~-g~~~~~p~Le  193 (317)
                      ++.+||+|||+++++|..+++.++++|+++||+|+|.++ +.+||++++++++|+.||+.||+++|..+ |.+ ..|.|+
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~-~~s~L~   80 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKS-SESPLE   80 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCC-CCChHH
Confidence            578999999999999998877778999999999999998 89999999999999999999999999998 998 789999


Q ss_pred             HHHHHHHHHhhhhhh
Q psy11905        194 NLLKIILWSQGELDK  208 (317)
Q Consensus       194 ~Llk~~~w~~~~l~~  208 (317)
                      .++++..|+...+..
T Consensus        81 ~~~~~~~~~~~~l~~   95 (99)
T smart00757       81 ILLSAGLAALKTLLE   95 (99)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998766654

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>KOG2659|consensus

Probab=99.34  E-value=2.9e-11  Score=108.30  Aligned_cols=196  Identities=21%  Similarity=0.312  Sum_probs=123.6

Q ss_pred             HHHHHHHHc-CCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHH
Q psy11905         67 IMIRDAIQN-GRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERT  145 (317)
Q Consensus        67 ~~I~~~I~~-gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~l  145 (317)
                      .-|.+.+.. |--+.|.....+.  .+.....++.+.=.+.+..++|+.|++.+||+..++..+..-.++....=.++++
T Consensus        31 ~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q  108 (228)
T KOG2659|consen   31 RLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQL  108 (228)
T ss_pred             HHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHH
Confidence            344455544 4444444444332  2322245677888899999999999999999999976655444442211122222


Q ss_pred             HHHHccCCCCCCcchhccCHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhhhhhhccCCCCcccCCcccCCC
Q psy11905        146 MALLAFGEPMNSPFGDLLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMRAFSQLCGC  225 (317)
Q Consensus       146 m~lL~y~~~~~spy~~Ll~~~~r~~la~~~n~~il~~~g~~~~~p~Le~Llk~~~w~~~~l~~~~~elP~ei~l~~~~~~  225 (317)
                      ..+=+-             -....+-|-.|.+.-+...|.. +...+.-+-+....    |-     +|           
T Consensus       109 ~lIEli-------------R~~~~eeal~F~q~~LA~~a~e-~~~~~~elE~~l~l----Lv-----f~-----------  154 (228)
T KOG2659|consen  109 HLIELI-------------REGKTEEALEFAQTKLAPFAEE-NPKKMEELERTLAL----LV-----FE-----------  154 (228)
T ss_pred             HHHHHH-------------HhhhHHHHHHHHHHHccccccc-cHHHHHHHHHHHHH----HH-----cC-----------
Confidence            111000             0112334555555556655654 11222222222211    10     01           


Q ss_pred             cceEEeecccccccccccccccccccchhhhhhhhhHHHhhccCCCCCchhHHHHHHHHHHhhhhhcccCCCCccccccc
Q psy11905        226 HSITGLSFTQSSYLLSLVSSTCNAATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKIEYPKMVDFS  305 (317)
Q Consensus       226 hSvf~vsreq~t~~~~~~~~~~~~~~~r~~~~~~~n~~~~~~~~~~~~~~~l~~l~kl~~w~q~~l~~~~~~~~~~~~~~  305 (317)
                             ..|.++.+.++     +.++|+++|+++|++|+++++++ ++|||++|+|++.|||.+|+.+++.||+++|+.
T Consensus       155 -------~~~~sp~~~l~-----~~s~R~kvA~~vN~aiL~~~~~~-~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~  221 (228)
T KOG2659|consen  155 -------LSQESPSAELL-----SQSLRQKVASEVNSAILASQEHE-SEPKLPFLLKLISWAQEELDREKFSEPHFKDLT  221 (228)
T ss_pred             -------CcccCcHHHHH-----HHHHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHHhHhhccccccCCcc
Confidence                   12333444455     78999999999999999999988 899999999999999999999999999999999


Q ss_pred             cccccc
Q psy11905        306 SARLDS  311 (317)
Q Consensus       306 ~~~~~~  311 (317)
                      +|.++.
T Consensus       222 ~~~~e~  227 (228)
T KOG2659|consen  222 KIKSEE  227 (228)
T ss_pred             ccccCC
Confidence            998763

>smart00668 CTLH C-terminal to LisH motif

Probab=99.31  E-value=3.5e-12  Score=90.76  Aligned_cols=55  Identities=33%  Similarity=0.575  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcchhhhhHHHHHHHHHhcch
Q psy11905         63 MENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKI  117 (317)
Q Consensus        63 ~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~LeF~L~~q~fIeLir~~~~  117 (317)
                      +.++..|+++|+.||+++|++|+++++|.+.+.++.++|.|++|+|||+++.|+.
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            5789999999999999999999999999999999999999999999999998764

Alpha-helical motif of unknown function.

>KOG0293|consensus

Probab=98.40  E-value=3.4e-06  Score=81.12  Aligned_cols=163  Identities=15%  Similarity=0.232  Sum_probs=126.1

Q ss_pred             CCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh-ChhhhcCCCcchh
Q psy11905         23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNEL-YPELLDNDRYIYF  101 (317)
Q Consensus        23 ~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~-~p~L~~~~s~LeF  101 (317)
                      +...++.+++.+.|+..||.+++..+..|+|+-.+..     .-+...+++++|+++.++.-.... ++. .+......|
T Consensus        15 ikk~efi~il~q~l~slgy~~S~~~lE~es~ll~~ta-----t~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~f   88 (519)
T KOG0293|consen   15 IKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTA-----TTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMF   88 (519)
T ss_pred             eccchhhHhHHHHHHhcCccccchhhHHhhCcccccc-----hHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHH
Confidence            4556788999999999999999999999999974432     236678899999999999877666 343 344457899


Q ss_pred             hhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccCCCCC----CcchhccCHHHHHHHHHHHHH
Q psy11905        102 HLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFGEPMN----SPFGDLLNQAHRQKVASQLNT  177 (317)
Q Consensus       102 ~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~~~~~----spy~~Ll~~~~r~~la~~~n~  177 (317)
                      .+.+|.|+|+++.|++..|+...|..+.+...    ..+.+.++.+.|++++...    ..-+. + ...|.++.+++..
T Consensus        89 Lv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~----~~kk~~el~~sll~sn~~~~ne~~~~~~-~-~n~R~~ll~elsk  162 (519)
T KOG0293|consen   89 LVNKQIFLEFLKTGSISHALPVLRNPVLYLRK----NKKKFHELASSLLVSNDQFSNEENTTAQ-L-NNERDKLLDELSK  162 (519)
T ss_pred             HHHHHHHHHHHhhccHhhhhHhhhcchhhhhh----hHHHHHHHHHHHhccccccccccchhhh-h-chhHHHHHHHHHh
Confidence            99999999999999999999999987777764    3578899999999887321    12122 2 2347788888877


Q ss_pred             HHHhhcCCCCCchHHHHHHHHH
Q psy11905        178 AILKMEHHESTSPRLLNLLKII  199 (317)
Q Consensus       178 ~il~~~g~~~~~p~Le~Llk~~  199 (317)
                      -|-...-+  +.-+|+.|++++
T Consensus       163 yi~p~ill--P~rRLehLl~qA  182 (519)
T KOG0293|consen  163 YIPPNILL--PKRRLEHLLEQA  182 (519)
T ss_pred             hCCHhhcC--ChHHHHHHHHHH
Confidence            66554444  366999999987

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.19  E-value=2.5e-06  Score=51.49  Aligned_cols=27  Identities=44%  Similarity=0.892  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHh
Q psy11905         26 SDMNKLIMNYLVTEGFKEAAEKFQQES   52 (317)
Q Consensus        26 ~~Ln~lI~~yL~r~Gy~dtA~~f~~Es   52 (317)
                      +.||++|.+||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            469999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.96  E-value=1.7e-05  Score=49.57  Aligned_cols=32  Identities=47%  Similarity=0.949  Sum_probs=29.4

Q ss_pred             CHHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q psy11905         24 QRSDMNKLIMNYLVTEGFKEAAEKFQQESGIT   55 (317)
Q Consensus        24 ~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~   55 (317)
                      .+..++++|++||.++||.++|.+|.+|+++.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            45789999999999999999999999999875

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG1477|consensus

Probab=97.80  E-value=5.3e-06  Score=82.79  Aligned_cols=177  Identities=19%  Similarity=0.195  Sum_probs=135.4

Q ss_pred             CCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCC----hhHHH--------HHHHHHHHHHcCCHHHHHHHHHhhCh
Q psy11905         23 IQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLD----LNTME--------NRIMIRDAIQNGRIQEATALVNELYP   90 (317)
Q Consensus        23 ~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~----~e~~~--------~r~~I~~~I~~gdi~~Al~w~~~~~p   90 (317)
                      .........+..|+++.|+.+++..|+..+.-.....    ...+.        .+.....-+-.+-+..+.+.+.+.-+
T Consensus       247 ~s~~l~t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~  326 (469)
T KOG1477|consen  247 ISFNLSTVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIP  326 (469)
T ss_pred             ecccccCCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccc
Confidence            3333455788899999999999999988765432211    11111        23333333344455555666555555


Q ss_pred             hhhc-------CCCcchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCC--CChhhHHHHHHHHHHHccCCCCCCcchh
Q psy11905         91 ELLD-------NDRYIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQ--SDPDILNELERTMALLAFGEPMNSPFGD  161 (317)
Q Consensus        91 ~L~~-------~~s~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~--~~~~~~~eiq~lm~lL~y~~~~~spy~~  161 (317)
                      ....       ..+...+.++++.+|.+.+.|.+...+++-+.++++...  .+....+.++..++||+|++|..||...
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~  406 (469)
T KOG1477|consen  327 TYRKVGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGY  406 (469)
T ss_pred             cccccceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCcccc
Confidence            4444       356788999999999999999999999999999998876  3446789999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q psy11905        162 LLNQAHRQKVASQLNTAILKMEHHESTSPRLLNLLKIIL  200 (317)
Q Consensus       162 Ll~~~~r~~la~~~n~~il~~~g~~~~~p~Le~Llk~~~  200 (317)
                      ++++.+++-+++.+|.+++...+.+ ..+.|+.++.+..
T Consensus       407 ~~~~~~~e~v~~~~n~~il~t~~~~-~~~~l~~~l~~~~  444 (469)
T KOG1477|consen  407 LLDPIQREPVAEALNSAILETDNNS-KDPDLERVLSQTP  444 (469)
T ss_pred             ccCcccchhHHhhhcccccccCCCC-ccchhhhhhccch
Confidence            9999999999999999999999999 7888888887763

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=96.61  E-value=0.00081  Score=45.11  Aligned_cols=28  Identities=7%  Similarity=-0.016  Sum_probs=18.8

Q ss_pred             eecccccccccccccccccccchhhhhh
Q psy11905        231 LSFTQSSYLLSLVSSTCNAATGRYSIKV  258 (317)
Q Consensus       231 vsreq~t~~~~~~~~~~~~~~~r~~~~~  258 (317)
                      |.+|+++++||||.+.|||+.+|..+..
T Consensus         3 Ic~e~~~~~n~P~~L~CGH~~c~~cl~~   30 (43)
T PF13445_consen    3 ICKEFSTEENPPMVLPCGHVFCKDCLQK   30 (43)
T ss_dssp             TT----TTSS-EEE-SSS-EEEHHHHHH
T ss_pred             ccccccCCCCCCEEEeCccHHHHHHHHH
Confidence            6788999999999999999999998864

>KOG0275|consensus

Probab=96.09  E-value=0.074  Score=50.50  Aligned_cols=168  Identities=22%  Similarity=0.308  Sum_probs=108.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhChhhhcCCCcc
Q psy11905         20 TIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATALVNELYPELLDNDRYI   99 (317)
Q Consensus        20 ~v~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~w~~~~~p~L~~~~s~L   99 (317)
                      ++.+....+-++|.+||-.+....|...+.+|.++.-.    ...........|-+|+|+..+.-++...-     ...-
T Consensus         2 sieiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLN----TVDSvd~Fv~dI~sG~WD~VL~~vqsLKL-----P~kk   72 (508)
T KOG0275|consen    2 SIEIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLN----TVDSVDGFVNDINSGHWDTVLKTVQSLKL-----PDKK   72 (508)
T ss_pred             ceeeecchHHHHHHHHHhhhhHHHHHHHHHHhhcccee----echhHHHHHHhcccCchHHHHHHHHhccC-----chhH
Confidence            34556668999999999999999999999999988632    12223556788999999999999887641     1122


Q ss_pred             hhhhhHHHHHHHHHhcchHHHHHHHHHHhcc--cCCCChhhHHHHHHHHHHHccCCCCCCcchhccCHHHHHHHHHHHHH
Q psy11905        100 YFHLQQLHLLELIRENKIEEALHFAQEQLSE--SGQSDPDILNELERTMALLAFGEPMNSPFGDLLNQAHRQKVASQLNT  177 (317)
Q Consensus       100 eF~L~~q~fIeLir~~~~~eAl~yar~~l~~--~~~~~~~~~~eiq~lm~lL~y~~~~~spy~~Ll~~~~r~~la~~~n~  177 (317)
                      ...|..|-.+|||.-.....|-..+|+.-+.  .....|+..-.++.+..-- |-+|. ..|.+--...+|..+|..+..
T Consensus        73 L~dLYEqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~-YFDp~-EaY~dssKEkrRa~IAQ~ls~  150 (508)
T KOG0275|consen   73 LIDLYEQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRS-YFDPR-EAYGDSSKEKRRAVIAQALSG  150 (508)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhccc-ccChh-hhcCcchHHHHHHHHHHHhcC
Confidence            3478888889998877776777777753221  1222333333333332221 44432 235553334567777776554


Q ss_pred             HHHhhcCCCCCchHHHHHHHHH-HHHh
Q psy11905        178 AILKMEHHESTSPRLLNLLKII-LWSQ  203 (317)
Q Consensus       178 ~il~~~g~~~~~p~Le~Llk~~-~w~~  203 (317)
                      +.-   -.  +.++|-+|+-++ -|.+
T Consensus       151 EV~---VV--ppSRLlaLlGQaLKWQq  172 (508)
T KOG0275|consen  151 EVH---VV--PPSRLLALLGQALKWQQ  172 (508)
T ss_pred             ceE---Ec--ChHHHHHHHHHHhhhHh
Confidence            432   12  567888888876 7876

>smart00757 CRA CT11-RanBPM

Probab=93.87  E-value=0.076  Score=41.20  Aligned_cols=48  Identities=29%  Similarity=0.233  Sum_probs=39.5

Q ss_pred             cccchhhhhhhhhHHHhhccCCCCCchhHHHHHHHHHHhhhhhcccCC
Q psy11905        249 AATGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGELDKKKI  296 (317)
Q Consensus       249 ~~~~r~~~~~~~n~~~~~~~~~~~~~~~l~~l~kl~~w~q~~l~~~~~  296 (317)
                      ...+|..++.++|.++++..+....+|.|..++|...||+.+|.+.+.
T Consensus        51 ~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~~~~~~~~~~~~l~~~~~   98 (99)
T smart00757       51 SPSQREKLAEELNSAILELLHGKSSESPLEILLSAGLAALKTLLEKGG   98 (99)
T ss_pred             CHHHHHHHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHHhcC
Confidence            345789999999999998863233689999999999999999987553

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=91.02  E-value=2.4  Score=35.07  Aligned_cols=40  Identities=28%  Similarity=0.178  Sum_probs=35.3

Q ss_pred             cchhhhhhhhhHHHhhccCCCCCchhHHHHHHHHHHhhhhh
Q psy11905        251 TGRYSIKVALNTAILKMEHHESTSPRLLNLLKIILWSQGEL  291 (317)
Q Consensus       251 ~~r~~~~~~~n~~~~~~~~~~~~~~~l~~l~kl~~w~q~~l  291 (317)
                      ..|.+++.++|.++++..+.. .+|.|..+++-..||+..|
T Consensus       105 ~~~~~la~~~~~~~l~~~~~~-~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen  105 ERREELAEEFNSAILKSYGLP-KESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHHHHHHHHHHHHHhCcC-CCCHHHHHHHHHHHHhhhc
Confidence            678899999999999887655 7899999999999999765

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG1333|consensus

Probab=86.57  E-value=4.3  Score=36.27  Aligned_cols=137  Identities=17%  Similarity=0.239  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHcCCHHHHHH----HHHhhChhhhcCCC----
Q psy11905         26 SDMNKLIMNYLVTEGFKEAAEKFQQESGITPSLDLNTMENRIMIRDAIQNGRIQEATA----LVNELYPELLDNDR----   97 (317)
Q Consensus        26 ~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~~~~e~~~~r~~I~~~I~~gdi~~Al~----w~~~~~p~L~~~~s----   97 (317)
                      +.++.+|-+||+-.|+..|.++|-.|.....+.....=.-..+..++|...|++.--+    |=+..+..|.....    
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~   85 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH   85 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            4688999999999999999999988887665444333333566777888888876543    22333444433322    


Q ss_pred             cchhhhhHHHHHHHHHhcchHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHccC--C-C-CCCcchhccCHHHHHHH
Q psy11905         98 YIYFHLQQLHLLELIRENKIEEALHFAQEQLSESGQSDPDILNELERTMALLAFG--E-P-MNSPFGDLLNQAHRQKV  171 (317)
Q Consensus        98 ~LeF~L~~q~fIeLir~~~~~eAl~yar~~l~~~~~~~~~~~~eiq~lm~lL~y~--~-~-~~spy~~Ll~~~~r~~l  171 (317)
                      .++=.|.+..++--|.++..+.|=+|-++.-+...+ ++++.+       .++|+  + . ++.|++.+|+.. |.++
T Consensus        86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqn-q~eWkD-------WF~fPf~~~a~~tppf~~~F~kt-w~e~  154 (241)
T KOG1333|consen   86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQN-QAEWKD-------WFVLPFLPSAKDTPPFRKYFDKT-WIEI  154 (241)
T ss_pred             HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhc-chhhhh-------heecccCCCCCCCccHHHHHHhh-hhHh
Confidence            366678888888889999999998888865444433 222222       23332  1 2 345677766543 6554

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=81.11  E-value=4.9  Score=30.67  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCC
Q psy11905         25 RSDMNKLIMNYLVTEGFKEAAEKFQQESGITPS   57 (317)
Q Consensus        25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~   57 (317)
                      ...++.+|.+||--.||.-|+..|..|+|....
T Consensus        18 g~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~   50 (81)
T PF09398_consen   18 GRLINELIREYLEFNNLDYTLSVFQPESGQPEE   50 (81)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred             hHHHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence            346899999999999999999999999998743

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 46/210 (21%)

Query: 14  WLNKLETIHIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGIT-PSLDLN---TMENRIMI 69
           W + +++       +NKL              EK  +ES I+ PS+ L     +EN   +
Sbjct: 396 WFDVIKSD--VMVVVNKLHK--------YSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 70  RDAIQNGRIQEATALVNELYPELLDNDRYIYFHLQQLHLLELIRENKIEEA------LHF 123
             +I +      T   ++L P  LD   Y Y H+   HL  +    ++           F
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSHIGH-HLKNIEHPERMTLFRMVFLDFRF 502

Query: 124 AQEQLSESGQSDPDILNELERTMALLAFGEPMNSPFGDL--------LNQAHRQKVASQL 175
            ++++                  A  A G  +N+    L         N    +++ + +
Sbjct: 503 LEQKIRHDS-------------TAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAI 548

Query: 176 NTAILKMEHHESTSPRLLNLLKIILWSQGE 205
              + K+E +   S    +LL+I L ++ E
Sbjct: 549 LDFLPKIEENLICSKY-TDLLRIALMAEDE 577

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	94.11
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	92.83

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=94.11  E-value=0.065  Score=40.37  Aligned_cols=33  Identities=30%  Similarity=0.648  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCC
Q psy11905         25 RSDMNKLIMNYLVTEGFKEAAEKFQQESGITPS   57 (317)
Q Consensus        25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~~   57 (317)
                      +++||+.|++||...||.+++.+|.+|++++.+
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            458999999999999999999999999988743

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=92.83  E-value=0.11  Score=39.30  Aligned_cols=35  Identities=34%  Similarity=0.516  Sum_probs=32.4

Q ss_pred             CCCHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q psy11905         22 HIQRSDMNKLIMNYLVTEGFKEAAEKFQQESGITP   56 (317)
Q Consensus        22 ~~~~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~   56 (317)
                      .++.+++|.+|.-||...||..+|-+|.+|+++..
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~   36 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ   36 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence            57889999999999999999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	94.79

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.79  E-value=0.016  Score=40.73  Aligned_cols=32  Identities=31%  Similarity=0.659  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q psy11905         25 RSDMNKLIMNYLVTEGFKEAAEKFQQESGITP   56 (317)
Q Consensus        25 ~~~Ln~lI~~yL~r~Gy~dtA~~f~~Es~l~~   56 (317)
                      +++||+.|++||..+|+.+++.+|.+|++++.
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~   38 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM   38 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCC
Confidence            46899999999999999999999999998863