Psyllid ID: psy12031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
TIRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINSH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccEEEEccccccccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHEcccccccEEEEcccccccEEEHHHHHHHcHHHHHHHHHHHHHccccccccccccEEEcccccccccEEcccEEEEEHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
TIRNEKVEVKQKWASRLLGKLRKDITQECREDFVLsitgkkpamcvlsnpdqkgkmrriDCLRQADKVWRLDLVMVILFKaiplestdgerlekapecahpslcvnpyhinvSVRELDLYLANYINSH
Flexible Loop (DISEMBL)
tirnekvevkqkwasrllgklrkditQECREDFvlsitgkkpamcvlsnpdqkgkmrriDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINSH
Low Complexity Region (SEG)
TIRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINSH
Disordered region (IsUnstruct)
***********KWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPD*KGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTD***L*KAPECAHPSLCVNPYHINVSVRELDLYLANYI***
Disordered Region (DISOPRED)
******V***QKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINS*
Disordered Region (DISEMBL)
*********KQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINSH
Disordered Region (DISPRO)
***NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINSH
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TIRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q90932	431	Nuclear factor 1 X-type O	yes	N/A	0.960	0.285	0.788	8e-56
P17923	522	Nuclear factor 1 A-type O	no	N/A	0.968	0.237	0.790	2e-55
P09414	509	Nuclear factor 1 A-type O	yes	N/A	0.968	0.243	0.790	2e-55
Q12857	509	Nuclear factor 1 A-type O	yes	N/A	0.968	0.243	0.790	2e-55
Q02780	532	Nuclear factor 1 A-type O	yes	N/A	0.968	0.233	0.790	2e-55
Q14938	502	Nuclear factor 1 X-type O	no	N/A	0.960	0.245	0.772	4e-55
P21999	506	Nuclear factor 1 C-type O	no	N/A	0.945	0.239	0.818	4e-55
P70257	488	Nuclear factor 1 X-type O	no	N/A	0.960	0.252	0.772	4e-55
P08651	508	Nuclear factor 1 C-type O	no	N/A	0.945	0.238	0.826	4e-55
P17926	439	Nuclear factor 1 C-type O	no	N/A	0.953	0.277	0.819	1e-54

>sp|Q90932|NFIX_CHICK Nuclear factor 1 X-type OS=Gallus gallus GN=NFIX PE=2 SV=1

 Score =  215 bits (547), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 97/123 (78%), Positives = 108/123 (87%)

Query: 5   EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
           EK EVKQKWASRLL KLRKDI  ECREDFVLS+TGKK   CVLSNPDQKGK+RRIDCLRQ
Sbjct: 63  EKPEVKQKWASRLLAKLRKDIRPECREDFVLSVTGKKAPCCVLSNPDQKGKIRRIDCLRQ 122

Query: 65  ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
           ADKVWRLDLVMVILFK +PLESTDGERL KAP+CA P LCV P+HI V+++ELDLYLA +
Sbjct: 123 ADKVWRLDLVMVILFKGVPLESTDGERLAKAPQCASPGLCVQPHHIGVTIKELDLYLAFF 182

Query: 125 INS 127
           + +
Sbjct: 183 VQA 185

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.
Gallus gallus (taxid: 9031)

>sp|P17923|NFIA_CHICK Nuclear factor 1 A-type OS=Gallus gallus GN=NFIA PE=1 SV=1

 Score =  213 bits (543), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query: 4   NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
           +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct: 62  SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121

Query: 64  QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
           QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181

Query: 124 YINS 127
           ++++
Sbjct: 182 FVHA 185

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Gallus gallus (taxid: 9031)

>sp|P09414|NFIA_RAT Nuclear factor 1 A-type OS=Rattus norvegicus GN=Nfia PE=1 SV=2

 Score =  213 bits (543), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query: 4   NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
           +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct: 62  SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121

Query: 64  QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
           QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181

Query: 124 YINS 127
           ++++
Sbjct: 182 FVHA 185

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Rattus norvegicus (taxid: 10116)

>sp|Q12857|NFIA_HUMAN Nuclear factor 1 A-type OS=Homo sapiens GN=NFIA PE=1 SV=2

 Score =  213 bits (543), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query: 4   NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
           +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct: 62  SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121

Query: 64  QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
           QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181

Query: 124 YINS 127
           ++++
Sbjct: 182 FVHA 185

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Homo sapiens (taxid: 9606)

>sp|Q02780|NFIA_MOUSE Nuclear factor 1 A-type OS=Mus musculus GN=Nfia PE=1 SV=1

 Score =  213 bits (543), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query: 4   NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
           +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct: 85  SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 144

Query: 64  QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
           QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct: 145 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 204

Query: 124 YINS 127
           ++++
Sbjct: 205 FVHA 208

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Mus musculus (taxid: 10090)

>sp|Q14938|NFIX_HUMAN Nuclear factor 1 X-type OS=Homo sapiens GN=NFIX PE=1 SV=2

 Score =  213 bits (541), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/123 (77%), Positives = 110/123 (89%)

Query: 5   EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
           EK E+KQKWASRLL KLRKDI  E REDFVL+ITGKKP  CVLSNPDQKGK+RRIDCLRQ
Sbjct: 63  EKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQ 122

Query: 65  ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
           ADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI V+++ELDLYLA +
Sbjct: 123 ADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYF 182

Query: 125 INS 127
           +++
Sbjct: 183 VHT 185

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Homo sapiens (taxid: 9606)

>sp|P21999|NFIC_PIG Nuclear factor 1 C-type OS=Sus scrofa GN=NFIC PE=3 SV=1

 Score =  213 bits (541), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 99/121 (81%), Positives = 106/121 (87%)

Query: 5   EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
           EK EVKQKWASRLL KLRKDI  ECREDFVL+ITGKK   CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64  EKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123

Query: 65  ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
           ADKVWRLDLVMVILFK IPLESTDGERL KA +C HP LCV P+HI V+V+ELDLYLA +
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183

Query: 125 I 125
           +
Sbjct: 184 V 184

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Sus scrofa (taxid: 9823)

>sp|P70257|NFIX_MOUSE Nuclear factor 1 X-type OS=Mus musculus GN=Nfix PE=1 SV=2

 Score =  213 bits (541), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/123 (77%), Positives = 110/123 (89%)

Query: 5   EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
           EK E+KQKWASRLL KLRKDI  E REDFVL+ITGKKP  CVLSNPDQKGK+RRIDCLRQ
Sbjct: 63  EKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQ 122

Query: 65  ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
           ADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI V+++ELDLYLA +
Sbjct: 123 ADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYF 182

Query: 125 INS 127
           +++
Sbjct: 183 VHT 185

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. Isoform NFIX1 acts as a transcriptional activator while isoform NFIX3 acts as a repressor.

Mus musculus (taxid: 10090)

>sp|P08651|NFIC_HUMAN Nuclear factor 1 C-type OS=Homo sapiens GN=NFIC PE=1 SV=2

 Score =  212 bits (540), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 100/121 (82%), Positives = 106/121 (87%)

Query: 5   EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
           EK EVKQKWASRLL KLRKDI  ECREDFVLSITGKK   CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64  EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123

Query: 65  ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
           ADKVWRLDLVMVILFK IPLESTDGERL KA +C HP LCV P+HI V+V+ELDLYLA +
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183

Query: 125 I 125
           +
Sbjct: 184 V 184

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Homo sapiens (taxid: 9606)

>sp|P17926|NFIC_CHICK Nuclear factor 1 C-type OS=Gallus gallus GN=NFIC PE=1 SV=1

 Score =  211 bits (537), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/122 (81%), Positives = 110/122 (90%)

Query: 4   NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
           +EK EVKQKWASRLL KLRKDI  ECREDFVLSITGKKP+ CVLSNPDQKGKMRRIDCLR
Sbjct: 63  SEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKPSCCVLSNPDQKGKMRRIDCLR 122

Query: 64  QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
           QADKVWRLDLVMVILFK IPLESTDGERL KA +C +P LC+ P+HI+VSV+ELDLYLA 
Sbjct: 123 QADKVWRLDLVMVILFKGIPLESTDGERLVKAGQCTNPILCIQPHHISVSVKELDLYLAY 182

Query: 124 YI 125
           ++
Sbjct: 183 FV 184

Recognizes and binds the palindromic sequence 5'-TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
328710533	656	PREDICTED: nuclear factor 1 X-type-like	0.992	0.193	0.960	5e-69
242012988	234	Nuclear factor, putative [Pediculus huma	0.992	0.542	0.952	7e-66
270014496	608	hypothetical protein TcasGA2_TC001775 [T	0.992	0.208	0.913	6e-65
91092246	606	PREDICTED: similar to Nuclear factor I C	0.992	0.209	0.913	7e-65
340722002	671	PREDICTED: nuclear factor 1 X-type-like	0.992	0.189	0.913	7e-65
383860570	763	PREDICTED: uncharacterized protein LOC10	0.992	0.166	0.913	9e-65
321468430	182	hypothetical protein DAPPUDRAFT_52430 [D	0.992	0.697	0.937	9e-65
345490702	699	PREDICTED: nuclear factor 1 C-type-like	0.992	0.181	0.913	1e-64
307169916	876	Nuclear factor 1 A-type [Camponotus flor	0.992	0.144	0.913	1e-64
350414865	880	PREDICTED: nuclear factor 1 X-type-like	0.992	0.144	0.913	2e-64

>gi|328710533|ref|XP_001947078.2| PREDICTED: nuclear factor 1 X-type-like [Acyrthosiphon pisum]

 Score =  265 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 122/127 (96%), Positives = 124/127 (97%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           + NEK EVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC
Sbjct: 52  LMNEKPEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 111

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK+PEC HPSLCVNPYHINVSVRELDLYL
Sbjct: 112 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKSPECTHPSLCVNPYHINVSVRELDLYL 171

Query: 122 ANYINSH 128
           ANYINSH
Sbjct: 172 ANYINSH 178

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012988|ref|XP_002427205.1| Nuclear factor, putative [Pediculus humanus corporis] gi|212511497|gb|EEB14467.1| Nuclear factor, putative [Pediculus humanus corporis]

 Score =  254 bits (649), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 121/127 (95%), Positives = 123/127 (96%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           + NEKVEVKQKWASRLLGKLRKDITQECREDFVL ITGKKPAMCVLSNPDQKGKMRRIDC
Sbjct: 82  LMNEKVEVKQKWASRLLGKLRKDITQECREDFVLGITGKKPAMCVLSNPDQKGKMRRIDC 141

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEKA ECAHP LCVNPYHINVSVRELDLYL
Sbjct: 142 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAAECAHPGLCVNPYHINVSVRELDLYL 201

Query: 122 ANYINSH 128
           AN+INSH
Sbjct: 202 ANFINSH 208

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014496|gb|EFA10944.1| hypothetical protein TcasGA2_TC001775 [Tribolium castaneum]

 Score =  251 bits (641), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 116/127 (91%), Positives = 123/127 (96%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           ++NEK EVKQKWASRLLGKLRKDITQECREDFVLSITGK+PA+CVLSNPDQKGKMRRIDC
Sbjct: 78  LQNEKAEVKQKWASRLLGKLRKDITQECREDFVLSITGKRPAVCVLSNPDQKGKMRRIDC 137

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK P+C+ P LCVNPYHINVSVRELDLYL
Sbjct: 138 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKNPDCSQPGLCVNPYHINVSVRELDLYL 197

Query: 122 ANYINSH 128
           AN+INSH
Sbjct: 198 ANFINSH 204

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092246|ref|XP_971603.1| PREDICTED: similar to Nuclear factor I CG2380-PB [Tribolium castaneum]

 Score =  251 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 116/127 (91%), Positives = 123/127 (96%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           ++NEK EVKQKWASRLLGKLRKDITQECREDFVLSITGK+PA+CVLSNPDQKGKMRRIDC
Sbjct: 78  LQNEKAEVKQKWASRLLGKLRKDITQECREDFVLSITGKRPAVCVLSNPDQKGKMRRIDC 137

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK P+C+ P LCVNPYHINVSVRELDLYL
Sbjct: 138 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKNPDCSQPGLCVNPYHINVSVRELDLYL 197

Query: 122 ANYINSH 128
           AN+INSH
Sbjct: 198 ANFINSH 204

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722002|ref|XP_003399401.1| PREDICTED: nuclear factor 1 X-type-like isoform 1 [Bombus terrestris] gi|350414867|ref|XP_003490449.1| PREDICTED: nuclear factor 1 X-type-like isoform 2 [Bombus impatiens]

 Score =  251 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 116/127 (91%), Positives = 121/127 (95%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           ++NEK+EVKQKWASRLLGKLRKDITQE REDFVLSITGK+PAMCVLSNPDQKGKMRRIDC
Sbjct: 52  LQNEKLEVKQKWASRLLGKLRKDITQEYREDFVLSITGKRPAMCVLSNPDQKGKMRRIDC 111

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK  ECA P LCVNPYHINVSVRELDLYL
Sbjct: 112 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKTAECAQPGLCVNPYHINVSVRELDLYL 171

Query: 122 ANYINSH 128
           AN+I SH
Sbjct: 172 ANFITSH 178

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860570|ref|XP_003705762.1| PREDICTED: uncharacterized protein LOC100883560 [Megachile rotundata]

 Score =  251 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 116/127 (91%), Positives = 121/127 (95%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           ++NEK+EVKQKWASRLLGKLRKDITQE REDFVLSITGK+PAMCVLSNPDQKGKMRRIDC
Sbjct: 151 LQNEKLEVKQKWASRLLGKLRKDITQEYREDFVLSITGKRPAMCVLSNPDQKGKMRRIDC 210

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK  ECA P LCVNPYHINVSVRELDLYL
Sbjct: 211 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKTAECAQPGLCVNPYHINVSVRELDLYL 270

Query: 122 ANYINSH 128
           AN+I SH
Sbjct: 271 ANFITSH 277

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468430|gb|EFX79415.1| hypothetical protein DAPPUDRAFT_52430 [Daphnia pulex]

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/127 (93%), Positives = 124/127 (97%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           ++NEK EVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC
Sbjct: 52  LQNEKPEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 111

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK+P+C HP LCVNPYHINVSVRELDLYL
Sbjct: 112 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKSPDCLHPGLCVNPYHINVSVRELDLYL 171

Query: 122 ANYINSH 128
           AN+INSH
Sbjct: 172 ANFINSH 178

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490702|ref|XP_001602848.2| PREDICTED: nuclear factor 1 C-type-like [Nasonia vitripennis]

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 116/127 (91%), Positives = 121/127 (95%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           ++NEK+EVKQKWASRLLGKLRKDITQE REDFVLSITGK+PAMCVLSNPDQKGKMRRIDC
Sbjct: 78  LQNEKLEVKQKWASRLLGKLRKDITQEYREDFVLSITGKRPAMCVLSNPDQKGKMRRIDC 137

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK  ECA P LCVNPYHINVSVRELDLYL
Sbjct: 138 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKTAECAQPGLCVNPYHINVSVRELDLYL 197

Query: 122 ANYINSH 128
           AN+I SH
Sbjct: 198 ANFITSH 204

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169916|gb|EFN62425.1| Nuclear factor 1 A-type [Camponotus floridanus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 116/127 (91%), Positives = 121/127 (95%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           ++NEK+EVKQKWASRLLGKLRKDITQE REDFVLSITGK+PAMCVLSNPDQKGKMRRIDC
Sbjct: 260 LQNEKLEVKQKWASRLLGKLRKDITQEYREDFVLSITGKRPAMCVLSNPDQKGKMRRIDC 319

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK  ECA P LCVNPYHINVSVRELDLYL
Sbjct: 320 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKTAECAQPGLCVNPYHINVSVRELDLYL 379

Query: 122 ANYINSH 128
           AN+I SH
Sbjct: 380 ANFITSH 386

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414865|ref|XP_003490448.1| PREDICTED: nuclear factor 1 X-type-like isoform 1 [Bombus impatiens]

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 116/127 (91%), Positives = 121/127 (95%)

Query: 2   IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
           ++NEK+EVKQKWASRLLGKLRKDITQE REDFVLSITGK+PAMCVLSNPDQKGKMRRIDC
Sbjct: 261 LQNEKLEVKQKWASRLLGKLRKDITQEYREDFVLSITGKRPAMCVLSNPDQKGKMRRIDC 320

Query: 62  LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
           LRQADKVWRLDLVMVILFKAIPLESTDGERLEK  ECA P LCVNPYHINVSVRELDLYL
Sbjct: 321 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKTAECAQPGLCVNPYHINVSVRELDLYL 380

Query: 122 ANYINSH 128
           AN+I SH
Sbjct: 381 ANFITSH 387

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0042696	766	NfI "Nuclear factor I" [Drosop	0.992	0.165	0.881	6.6e-58
UNIPROTKB|P17926	439	NFIC "Nuclear factor 1 C-type"	0.953	0.277	0.819	6.5e-51
ZFIN|ZDB-GENE-080305-2	506	nfic "nuclear factor I/C" [Dan	0.945	0.239	0.826	2.2e-50
UNIPROTKB|F1NT77	504	NFIA "Nuclear factor 1" [Gallu	0.968	0.246	0.790	2.8e-50
UNIPROTKB|F1NT78	240	NFIA "Nuclear factor 1" [Gallu	0.968	0.516	0.790	2.8e-50
UNIPROTKB|F1NT83	456	NFIA "Nuclear factor 1" [Gallu	0.968	0.271	0.790	2.8e-50
UNIPROTKB|F1NT84	517	NFIA "Nuclear factor 1" [Gallu	0.968	0.239	0.790	2.8e-50
UNIPROTKB|P17923	522	NFIA "Nuclear factor 1 A-type"	0.968	0.237	0.790	2.8e-50
UNIPROTKB|Q90927	498	cNFI-A4 "Nuclear factor 1" [Ga	0.968	0.248	0.790	2.8e-50
UNIPROTKB|Q90929	386	cNFI-A6 "Nuclear factor 1" [Ga	0.968	0.321	0.790	2.8e-50

FB|FBgn0042696 NfI "Nuclear factor I" [Drosophila melanogaster (taxid:7227)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 112/127 (88%), Positives = 119/127 (93%)

Query:     2 IRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDC 61
             ++NEK EVKQKWASRLLGKLRKDITQE REDFV SI GK+ ++CVLSNPDQKGKMRRIDC
Sbjct:    78 LQNEKTEVKQKWASRLLGKLRKDITQESREDFVQSIIGKRKSICVLSNPDQKGKMRRIDC 137

Query:    62 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYL 121
             LRQADKVWRLDLVMVILFKAIPLESTDGERLEK PEC HP LCVNPYHINVSVRELDLYL
Sbjct:   138 LRQADKVWRLDLVMVILFKAIPLESTDGERLEKNPECLHPGLCVNPYHINVSVRELDLYL 197

Query:   122 ANYINSH 128
             AN+IN+H
Sbjct:   198 ANFINTH 204

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|P17926 NFIC "Nuclear factor 1 C-type" [Gallus gallus (taxid:9031)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 100/122 (81%), Positives = 110/122 (90%)

Query:     4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
             +EK EVKQKWASRLL KLRKDI  ECREDFVLSITGKKP+ CVLSNPDQKGKMRRIDCLR
Sbjct:    63 SEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKPSCCVLSNPDQKGKMRRIDCLR 122

Query:    64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
             QADKVWRLDLVMVILFK IPLESTDGERL KA +C +P LC+ P+HI+VSV+ELDLYLA 
Sbjct:   123 QADKVWRLDLVMVILFKGIPLESTDGERLVKAGQCTNPILCIQPHHISVSVKELDLYLAY 182

Query:   124 YI 125
             ++
Sbjct:   183 FV 184

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-080305-2 nfic "nuclear factor I/C" [Danio rerio (taxid:7955)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 100/121 (82%), Positives = 108/121 (89%)

Query:     5 EKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQ 64
             EK EVKQKWASRLL KLRKDI  ECREDFVLSITGKKP  CVLSNPDQKGKMRRIDCLRQ
Sbjct:    64 EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKPPCCVLSNPDQKGKMRRIDCLRQ 123

Query:    65 ADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANY 124
             ADKVWRLDLVMVILFK IPLESTDGERL K  +C++P LCV P+HI+VSV+ELDLYLA +
Sbjct:   124 ADKVWRLDLVMVILFKGIPLESTDGERLVKGGQCSNPILCVQPHHISVSVKELDLYLAYF 183

Query:   125 I 125
             +
Sbjct:   184 V 184

GO:0005622 "intracellular" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1NT77 NFIA "Nuclear factor 1" [Gallus gallus (taxid:9031)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query:     4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
             +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct:    62 SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121

Query:    64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
             QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct:   122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181

Query:   124 YINS 127
             ++++
Sbjct:   182 FVHA 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NT78 NFIA "Nuclear factor 1" [Gallus gallus (taxid:9031)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query:     4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
             +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct:    53 SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 112

Query:    64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
             QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct:   113 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 172

Query:   124 YINS 127
             ++++
Sbjct:   173 FVHA 176

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NT83 NFIA "Nuclear factor 1" [Gallus gallus (taxid:9031)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query:     4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
             +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct:    62 SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121

Query:    64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
             QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct:   122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181

Query:   124 YINS 127
             ++++
Sbjct:   182 FVHA 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NT84 NFIA "Nuclear factor 1" [Gallus gallus (taxid:9031)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query:     4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
             +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct:    62 SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121

Query:    64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
             QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct:   122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181

Query:   124 YINS 127
             ++++
Sbjct:   182 FVHA 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|P17923 NFIA "Nuclear factor 1 A-type" [Gallus gallus (taxid:9031)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query:     4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
             +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct:    62 SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121

Query:    64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
             QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct:   122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181

Query:   124 YINS 127
             ++++
Sbjct:   182 FVHA 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q90927 cNFI-A4 "Nuclear factor 1" [Gallus gallus (taxid:9031)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query:     4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
             +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct:    62 SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 121

Query:    64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
             QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct:   122 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 181

Query:   124 YINS 127
             ++++
Sbjct:   182 FVHA 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q90929 cNFI-A6 "Nuclear factor 1" [Gallus gallus (taxid:9031)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 98/124 (79%), Positives = 111/124 (89%)

Query:     4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLR 63
             +EK EVKQKWASRLL KLRKDI  E REDFVL++TGKKP  CVLSNPDQKGKMRRIDCLR
Sbjct:    50 SEKPEVKQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 109

Query:    64 QADKVWRLDLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLAN 123
             QADKVWRLDLVMVILFK IPLESTDGERL K+P+C++P LCV P+HI VSV+ELDLYLA 
Sbjct:   110 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 169

Query:   124 YINS 127
             ++++
Sbjct:   170 FVHA 173

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02780	NFIA_MOUSE	No assigned EC number	0.7903	0.9687	0.2330	yes	N/A
Q90932	NFIX_CHICK	No assigned EC number	0.7886	0.9609	0.2853	yes	N/A
P09414	NFIA_RAT	No assigned EC number	0.7903	0.9687	0.2436	yes	N/A
Q12857	NFIA_HUMAN	No assigned EC number	0.7903	0.9687	0.2436	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
smart00523	109	smart00523, DWA, Domain A in dwarfin family protei	1e-24
pfam03165	103	pfam03165, MH1, MH1 domain	7e-18

>gnl|CDD|214708 smart00523, DWA, Domain A in dwarfin family proteins

 Score = 90.1 bits (224), Expect = 1e-24
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 16/117 (13%)

Query: 9   VKQKWASRLLGKLRKDITQECREDFVLSIT--GKKPAMCVLSNPDQKGKMRRIDCLRQAD 66
           V++KWA +    L K + ++  E+ + ++   G  P  CVL      G+++       A 
Sbjct: 1   VEEKWAKKATESLLKKLKKKQLEELLQAVESKGGPPTRCVLIPRSLDGRLQV------AH 54

Query: 67  KVWRLDLVMVILFKAIPLESTDGERLEKAPECAHP------SLCVNPYHINVSVREL 117
           +     ++   LF+   L+S     L+  P C H        +C NPYH +   R  
Sbjct: 55  RKGLPHVLYCRLFRWPDLQS--PHELKALPTCEHAFESKSDEVCCNPYHYSRVERPE 109

Length = 109

>gnl|CDD|217397 pfam03165, MH1, MH1 domain

 Score = 72.4 bits (178), Expect = 7e-18
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 26/117 (22%)

Query: 10  KQKWASRLLGKLRKDITQECREDFVLSIT--GKKPAMCV---------LSNPDQKGKMRR 58
            +K    LL KL+K    +  E+  L++   G  P  CV         L    +KG    
Sbjct: 1   AKKAVESLLKKLKKKK--QQLEELELAVESRGGPPTKCVTIPRSLDGRLQVAGRKGLPHV 58

Query: 59  IDCLRQADKVWRL-DLVMVILFKAIPLESTDGERLEKAPECAHPSLCVNPYHINVSV 114
           I C     ++WR  DL      KAIP       R +K        +C+NPYH +   
Sbjct: 59  IYC-----RLWRWPDLQSQHELKAIPTCEYAF-RSKK------DEVCINPYHYSRVE 103

The MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localisation signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG3663|consensus	518		100.0
smart00523	109	DWA Domain A in dwarfin family proteins.	99.93
cd00049	121	MH1 MH1 is a small DNA binding domain, binding in	99.87
PF03165	103	MH1: MH1 domain; InterPro: IPR003619 Mammalian dwa	99.53
COG4049	65	Uncharacterized protein containing archaeal-type C	89.6
KOG3701|consensus	411		87.46

>KOG3663|consensus

Probab=100.00  E-value=1e-89  Score=596.54  Aligned_cols=128  Identities=80%  Similarity=1.272  Sum_probs=126.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcChhhHhhhHhhhcCCCCCeeEeeCCCCCCcccccccccccCeeeehheeeeehhc
Q psy12031          1 TIRNEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFK   80 (128)
Q Consensus         1 ~l~~e~~evK~kWasrLL~KLrKDI~~e~re~Fv~~itg~~~~~CvlSnpDqKGKmRRIDclrQaDKVWRLDlVmviLfk   80 (128)
                      ||+|||||||||||||||+||||||++|+||+||++|+|+||+|||||||||||||||||||||||||||||||||||||
T Consensus        59 ELl~ekpEvKqKWASRLLaKlrKDIr~e~rEdFVltItGkk~p~CVlSnpDQKGKmRRIDCLRQADKVWRLDLVmVILFK  138 (518)
T KOG3663|consen   59 ELLNEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTITGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFK  138 (518)
T ss_pred             HHhccchHHHHHHHHHHHHHHHhhcchHHHHHHHhhhcCCCCCceeecCccccCceeehhhhhhhchheeeeeeeEEeec
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCcccccccCCCCCCCcccccCeeeEEEechhhHHHHHhhhcC
Q psy12031         81 AIPLESTDGERLEKAPECAHPSLCVNPYHINVSVRELDLYLANYINSH  128 (128)
Q Consensus        81 giPLESTDgeRl~k~~~C~~p~LCV~P~Hi~v~vreLDl~lan~~~~~  128 (128)
                      ||||||||||||+|+++|.||+||||||||+|+||||||||||||++.
T Consensus       139 gIPLESTDGERL~ksp~C~hP~LCVqPhHi~VsVkeLDlylAyfv~~~  186 (518)
T KOG3663|consen  139 GIPLESTDGERLEKSPQCSHPGLCVQPHHIGVSVKELDLYLAYFVHTV  186 (518)
T ss_pred             ccccccCchhhhhcCcccCCCccccccceeeeeehhhhHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999863

>smart00523 DWA Domain A in dwarfin family proteins

Probab=99.93  E-value=5.1e-26  Score=165.77  Aligned_cols=98  Identities=28%  Similarity=0.517  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHhhhcChhhHhhhHhhhcCCC--CCeeEeeCCCCCCcccccccccccCeeeehheeeeehhcccccccC
Q psy12031         10 KQKWASRLLGKLRKDITQECREDFVLSITGKK--PAMCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKAIPLEST   87 (128)
Q Consensus        10 K~kWasrLL~KLrKDI~~e~re~Fv~~itg~~--~~~CvlSnpDqKGKmRRIDclrQaDKVWRLDlVmviLfkgiPLEST   87 (128)
                      ++|||++++.+|.|++..+..|+|+++|+++.  |..||+++++++|||++      ||++|+++++|..||++.+|+| 
T Consensus         2 ~ek~~~k~~~sL~KklK~k~le~L~~AV~s~g~~~t~CV~i~~~~dgrl~~------~~~~~~phvi~crLfRWpdL~s-   74 (109)
T smart00523        2 EEKWAKKATESLLKKLKKKQLEELLQAVESKGGPPTRCVLIPRSLDGRLQV------AHRKGLPHVLYCRLFRWPDLQS-   74 (109)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEeCcccCccccc------ccCCCCCcEEEEEEeeCCCCCC-
Confidence            58999999999999999999999999999665  67999999999999988      8999999999999999999999 


Q ss_pred             cccccccCCCCCCCc------ccccCeeeEEEec
Q psy12031         88 DGERLEKAPECAHPS------LCVNPYHINVSVR  115 (128)
Q Consensus        88 DgeRl~k~~~C~~p~------LCV~P~Hi~v~vr  115 (128)
                       +++|.+.+.|.+|.      .||||||++..++
T Consensus        75 -~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~  107 (109)
T smart00523       75 -PHELKALPTCEHAFESKSDEVCCNPYHYSRVER  107 (109)
T ss_pred             -HHHceecccCCCcccCCCCeEEeCCceEEEeec
Confidence             99999999999998      9999999998764

>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove

Probab=99.87  E-value=1.3e-22  Score=150.07  Aligned_cols=97  Identities=37%  Similarity=0.498  Sum_probs=87.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhhcChhhHhhhHhhhcCCCCCeeEeeCC-CCCCcc--cccccccccCeeeeh-heeeeehh
Q psy12031          4 NEKVEVKQKWASRLLGKLRKDITQECREDFVLSITGKKPAMCVLSNP-DQKGKM--RRIDCLRQADKVWRL-DLVMVILF   79 (128)
Q Consensus         4 ~e~~evK~kWasrLL~KLrKDI~~e~re~Fv~~itg~~~~~CvlSnp-DqKGKm--RRIDclrQaDKVWRL-DlVmviLf   79 (128)
                      +|.++.++||+++||+||+|++..|..+.||.+..|. |..||++++ |+|++|  |++++..+++||||. ||.+.+  
T Consensus        14 ~~~e~~~~k~~~sLlKkLKk~~~le~L~~AV~s~g~~-~t~CV~i~r~D~rl~~~~r~~~phv~~crlwRWpDL~~~~--   90 (121)
T cd00049          14 GEEEKWKKKAAESLLKKLKKKIQLEELEDAVESRGGP-PTRCVLIPRSDGRLQVSHRKGLPHVIYCRVWRWPDLRSNH--   90 (121)
T ss_pred             cchHHHHHHHHHHHHHHHhcccCHHHHHHHHHcCCCC-CCCeEEeccccccccccccCCCcceEEEeeeeccccCchH--
Confidence            3678999999999999999999999999999999886 466888765 999999  999999999999999 999965  


Q ss_pred             cccccccCcccccccCCCCCCC------cccccCeeeEEEe
Q psy12031         80 KAIPLESTDGERLEKAPECAHP------SLCVNPYHINVSV  114 (128)
Q Consensus        80 kgiPLESTDgeRl~k~~~C~~p------~LCV~P~Hi~v~v  114 (128)
                                 +|.+-+.|.++      ..||||||++..+
T Consensus        91 -----------eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~  120 (121)
T cd00049          91 -----------ELKRLETCEHAFDSKPDEVCINPYHYSRVV  120 (121)
T ss_pred             -----------hheeCccCCCccccCCCeEEeCCceeeeec
Confidence                       78888899887      7999999999865

MH1 is present in Smad proteins, an important family of proteins involved in TGF-beta signalling and frequent targets of tumorigenic mutations. Also known as Domain A in dwarfin family proteins.

>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []

Probab=99.53  E-value=2.9e-15  Score=107.75  Aligned_cols=88  Identities=30%  Similarity=0.508  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhhhcChhhHhhhHhhhc--CCCCCeeEee---------CCCCCCcccccccccccCeeeeh-heeeeeh
Q psy12031         11 QKWASRLLGKLRKDITQECREDFVLSIT--GKKPAMCVLS---------NPDQKGKMRRIDCLRQADKVWRL-DLVMVIL   78 (128)
Q Consensus        11 ~kWasrLL~KLrKDI~~e~re~Fv~~it--g~~~~~CvlS---------npDqKGKmRRIDclrQaDKVWRL-DlVmviL   78 (128)
                      +||+.+||+||+|++  +..|+|+.+|+  |..+..||..         ++++||.+..|.|     |+||. ||.+..-
T Consensus         2 ~k~~~sLlkkLK~~~--~~le~L~~Av~s~g~~~t~CV~i~r~~dgrl~v~~~k~~phvl~c-----rlwRwpdL~~~~e   74 (103)
T PF03165_consen    2 EKAIKSLLKKLKKKI--GQLEELLKAVESRGDPPTKCVTIPRSLDGRLQVSGRKGLPHVLYC-----RLWRWPDLRHSHE   74 (103)
T ss_dssp             HHHHHHHHHHHTTTC--THHHHHHHHHHCTTTSTS---EEE--TTS-EEETTEEE-HHHHHH-----HHHT-TT--SCCC
T ss_pred             hHHHHHHHHHHcccc--chHHHHHHHHhcCCCCCCCcEEecCccCccccccccccCceEEEE-----EEechhhcCCHHh
Confidence            699999999999998  89999999999  8888889854         5789999999999     99999 9999999


Q ss_pred             hcccccccCcccccccCCCCCCCcccccCeeeEE
Q psy12031         79 FKAIPLESTDGERLEKAPECAHPSLCVNPYHINV  112 (128)
Q Consensus        79 fkgiPLESTDgeRl~k~~~C~~p~LCV~P~Hi~v  112 (128)
                      +|.+|...+.++ +      .+...|+||||.+.
T Consensus        75 Lk~l~~C~~~~~-~------~~~~vC~NPyHy~r  101 (103)
T PF03165_consen   75 LKRLPHCRFAFD-S------KNDEVCCNPYHYSR  101 (103)
T ss_dssp             EEE-TT-TT-GG-G--------SEEE--GGGEEE
T ss_pred             cccCCCCCChhh-c------CCCCEEeCCcEeee
Confidence            998888776632 1      12359999999975

The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localisation signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3QSV_A 1MHD_A 1OZJ_A 3KMP_B.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=89.60  E-value=0.13  Score=35.88  Aligned_cols=22  Identities=36%  Similarity=0.756  Sum_probs=20.6

Q ss_pred             hcccccccCcccccccCCCCCC
Q psy12031         79 FKAIPLESTDGERLEKAPECAH  100 (128)
Q Consensus        79 fkgiPLESTDgeRl~k~~~C~~  100 (128)
                      ||+|-.+|.|||.+.+|+-|..
T Consensus         4 ~KA~Kv~~RDGE~~lrCPRC~~   25 (65)
T COG4049           4 LKAIKVRDRDGEEFLRCPRCGM   25 (65)
T ss_pred             ceeeEeeccCCceeeeCCchhH
Confidence            8999999999999999999964

>KOG3701|consensus

Probab=87.46  E-value=1.2  Score=39.52  Aligned_cols=87  Identities=26%  Similarity=0.504  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhhhcChhh--HhhhHhhhc--CCCCCeeEeeCCCCCCccccccccccc-----------Ceeeehheee
Q psy12031         11 QKWASRLLGKLRKDITQEC--REDFVLSIT--GKKPAMCVLSNPDQKGKMRRIDCLRQA-----------DKVWRLDLVM   75 (128)
Q Consensus        11 ~kWasrLL~KLrKDI~~e~--re~Fv~~it--g~~~~~CvlSnpDqKGKmRRIDclrQa-----------DKVWRLDlVm   75 (128)
                      .+||++.+..|-|-+....  -|+.+.+++  |.++..||.--       |+.|+==|-           =||||---+ 
T Consensus        26 e~~~~ka~~slvkklk~~~~~le~l~~av~s~g~~~~~Cvtip-------rslD~Rlq~~~rkg~Phviy~rlwRwpdl-   97 (411)
T KOG3701|consen   26 EKFAEKAVESLVKKLKDKKGELENLIKAVESPGTKPTGCVTIP-------RSLDGRLQVAHRKGFPHVIYCRLWRWPDL-   97 (411)
T ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHhcCCCCCCCceEECC-------CCCCccccccCCCCCCceEEEEeeccccc-
Confidence            4666655544444444333  566666665  66778888654       555543333           378886321 


Q ss_pred             eehhcccccccC-cccccccCCCCCCC---cccccCeeeEEEe
Q psy12031         76 VILFKAIPLEST-DGERLEKAPECAHP---SLCVNPYHINVSV  114 (128)
Q Consensus        76 viLfkgiPLEST-DgeRl~k~~~C~~p---~LCV~P~Hi~v~v  114 (128)
                               .++ ---+|+-|+.|.+-   .-|+||||.+-..
T Consensus        98 ---------~~~~elk~l~~C~~a~~~~~~~vC~NPyHy~rv~  131 (411)
T KOG3701|consen   98 ---------QKNHELKRLECCEHAFESKSDNVCINPYHYSRVE  131 (411)
T ss_pred             ---------ccchhheecccCCccccCCCCCeeeCCcccceee
Confidence                     222 33456666666321   3699999987543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3qsv_A	132	SMAD4, mothers against decapentaplegic homolog 4;	96.5
3kmp_A	124	SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH	96.41
1ozj_A	144	SMAD 3; MAD homology domain 1, DNA recognition, TG	96.28

>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}

Probab=96.50  E-value=0.004  Score=46.38  Aligned_cols=91  Identities=22%  Similarity=0.469  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhhhcCh--hhHhhhHhhhcCC--CCCeeEeeCCCCCCccc--ccccccc--cCeeeehheeeeehhccc
Q psy12031         11 QKWASRLLGKLRKDITQ--ECREDFVLSITGK--KPAMCVLSNPDQKGKMR--RIDCLRQ--ADKVWRLDLVMVILFKAI   82 (128)
Q Consensus        11 ~kWasrLL~KLrKDI~~--e~re~Fv~~itg~--~~~~CvlSnpDqKGKmR--RIDclrQ--aDKVWRLDlVmviLfkgi   82 (128)
                      .||+.+...-|-|.+..  ..-|+..++|+.+  .+..||.--....|+++  .-.++-+  .=++||-          =
T Consensus        25 ek~~~ka~~sLvKkLK~k~~~Le~L~~Av~s~g~~~s~CV~ipr~ldgrlqv~~rk~~PHvi~cRlwRW----------P   94 (132)
T 3qsv_A           25 ETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRW----------P   94 (132)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTSSCCCCCEEECCTTSCEEETTEEECHHHHHHHHHTC----------T
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHhCCCCCCCCeEEeeccccccccccccccCcceeEEEEecC----------C
Confidence            37766654444444443  3688999999865  47889986545555542  1111111  1133442          2


Q ss_pred             ccccCcccccccCCCC---CCCcccccCeeeE
Q psy12031         83 PLESTDGERLEKAPEC---AHPSLCVNPYHIN  111 (128)
Q Consensus        83 PLESTDgeRl~k~~~C---~~p~LCV~P~Hi~  111 (128)
                      .|.|..=++|.-|...   .....||||||.+
T Consensus        95 dL~s~ELk~l~~C~~~~~~~~~~VC~NPyHY~  126 (132)
T 3qsv_A           95 DLHKNELKHVKYCQYAFDLKCDSVCVNPYHYE  126 (132)
T ss_dssp             TCCTTCEEECTTCTTCGGGCCSEEECCGGGEE
T ss_pred             ccCHhhcccCCCCCCCccCCCCeEEeCCcCcc
Confidence            3555444556655544   2246999999987

>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1

Probab=96.41  E-value=0.0059  Score=44.85  Aligned_cols=89  Identities=27%  Similarity=0.496  Sum_probs=47.1

Q ss_pred             HHHHHH----HHHHHhhhcChhhHhhhHhhhcCCCC-CeeEeeCCCCCCccc--ccccccc--cCeeeehheeeeehhcc
Q psy12031         11 QKWASR----LLGKLRKDITQECREDFVLSITGKKP-AMCVLSNPDQKGKMR--RIDCLRQ--ADKVWRLDLVMVILFKA   81 (128)
Q Consensus        11 ~kWasr----LL~KLrKDI~~e~re~Fv~~itg~~~-~~CvlSnpDqKGKmR--RIDclrQ--aDKVWRLDlVmviLfkg   81 (128)
                      .+||.+    |++||+|  +...-|.+..+|+...+ ..||.--....|++.  .--++-+  .=++||-.         
T Consensus        19 ~~~~~kav~sL~KklK~--~~~~Le~L~~Av~~~~~~s~CV~ipr~ldgrlqv~~~k~~Phvi~crl~RWp---------   87 (124)
T 3kmp_A           19 EKWAEKAVDALVKKLKK--KKGAMEELEKALSCPGQPSNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWP---------   87 (124)
T ss_dssp             HHHHHHHHHHHHHHHTT--STTHHHHHHHHHHCTTSCCCCCEEECCSSSCEEETTEEECHHHHHHHHHTCT---------
T ss_pred             hhHHHHHHHHHHHHHHh--ccchHHHHHHHHhCCCCCCCeEEeccccccccccCCcccCceeeEEEeecCC---------
Confidence            377665    5556554  34788889998875533 457765444556553  0001110  11344432         


Q ss_pred             ccccc-CcccccccCCCCC---CCcccccCeeeE
Q psy12031         82 IPLES-TDGERLEKAPECA---HPSLCVNPYHIN  111 (128)
Q Consensus        82 iPLES-TDgeRl~k~~~C~---~p~LCV~P~Hi~  111 (128)
                       .|.+ ..=.+|..|..-.   ....|+||||.+
T Consensus        88 -dL~~~~eLk~l~~C~~~~~~~~~~VC~NPyHY~  120 (124)
T 3kmp_A           88 -DLQSHHELKPLECCEFPFGSKQKEVCINPYHYK  120 (124)
T ss_dssp             -TCCCGGGEEECTTCSSCGGGCCSEEECCGGGEE
T ss_pred             -cCCCHHHcccCCCCCCCccCCCCeEEeCCccch
Confidence             2222 2224554443321   346899999987

>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*

Probab=96.28  E-value=0.0036  Score=47.35  Aligned_cols=87  Identities=26%  Similarity=0.524  Sum_probs=49.4

Q ss_pred             HHHH----HHHHHHhhhcChhhHhhhHhhhcCCC-CCeeEeeCCCCCCcccccc---cccc--cCeeeehheeeeehhcc
Q psy12031         12 KWAS----RLLGKLRKDITQECREDFVLSITGKK-PAMCVLSNPDQKGKMRRID---CLRQ--ADKVWRLDLVMVILFKA   81 (128)
Q Consensus        12 kWas----rLL~KLrKDI~~e~re~Fv~~itg~~-~~~CvlSnpDqKGKmRRID---clrQ--aDKVWRLDlVmviLfkg   81 (128)
                      +|+.    .|++||+|   ...-|.+..+|+-+. +..||.---...|++ +++   ++-+  .=++||-.=        
T Consensus        29 ~~~~kai~sLvKkLK~---~~~Le~L~~AV~s~g~~t~CV~iprsldgRl-qv~~rk~~PHVi~cRlwRWPD--------   96 (144)
T 1ozj_A           29 KWCEKAVKSLVKKLKK---TGQLDELEKAITTQNVNTKCITIPRSLDGRL-QVSHRKGLPHVIYCRLWRWPD--------   96 (144)
T ss_dssp             HHHHHHHHHHHHHHHH---TTCHHHHHHHHHHCCTTSCCCEEECCTTSCE-EETTEEECHHHHHHHHHTCTT--------
T ss_pred             HHHHHHHHHHHHHhcc---cccHHHHHHHHhCCCCCCCeEEcccCCCccc-cccCccCCCeeEEEEeeeCcc--------
Confidence            5655    56777766   367888988887432 456765544666776 121   1110  115566521        


Q ss_pred             cccccCcccccccCCCCC------CCcccccCeeeEEEe
Q psy12031         82 IPLESTDGERLEKAPECA------HPSLCVNPYHINVSV  114 (128)
Q Consensus        82 iPLESTDgeRl~k~~~C~------~p~LCV~P~Hi~v~v  114 (128)
                        |.|  +..|-.-+.|.      +...|+||||.+-..
T Consensus        97 --L~~--~~ELk~l~~C~~~~~~~~~~VC~NPYHY~Rv~  131 (144)
T 1ozj_A           97 --LHS--HHELRAMELCEFAFNMKKDEVCVNPYHYQRVE  131 (144)
T ss_dssp             --CCS--GGGEEECTTCTTCGGGCCSEEECCGGGEEECC
T ss_pred             --CCC--HhhccccccCCCchhcCCCeEEeCcchhhhhc
Confidence              222  23444445665      346899999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1ozja_	126	SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606	94.18

>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SMAD MH1 domain
superfamily: SMAD MH1 domain
family: SMAD MH1 domain
domain: SMAD MH1 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.05  Score=38.65  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=18.1

Q ss_pred             HHHHHHHHhhhcChhhHhhhHhhhc-CCCCCeeE-eeC
Q psy12031         14 ASRLLGKLRKDITQECREDFVLSIT-GKKPAMCV-LSN   49 (128)
Q Consensus        14 asrLL~KLrKDI~~e~re~Fv~~it-g~~~~~Cv-lSn   49 (128)
                      ...|++||+|-   ..-|++..+++ |..+..|| |++
T Consensus        29 i~sLvKkLKk~---~~le~L~~Av~s~g~~t~CV~Ipr   63 (126)
T d1ozja_          29 VKSLVKKLKKT---GQLDELEKAITTQNVNTKCITIPR   63 (126)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHCCTTSCCCEEEC
T ss_pred             HHHHHHHHhcc---chHHHHHHHHHCCCCCCCCEEeec
Confidence            34477777652   23455666654 33445677 444