Psyllid ID: psy12095

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQLL
Secondary Structure (PSIPRED)
cEEEEEccccEEEEEEEEcccccccccccccccEEEEEEEcccccEEEEcEEccccccccccEEEEcccccccccccEEEEEEEEccccccccEEEEEEEEccccccccccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEccccHHHHcccEEEEEEEEcccccccEEEEEEEEEHHHccccccEEEEEEcEcccccccccc
Coil and Loop (DISEMBL)
mkleydfnanslsVTVIqaedlpaldmggtsdpyvkvyllpdkkkkfETKVHrktlnpvfnetfvfkgvpyadaMNKTLVFAIFdfdrfskhdqiGEVKVALCQIDLAQTIEEWRELQSVEGEGGQLL
Flexible Loop (DISEMBL)
mkleydfnanSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKkfetkvhrktlnpvfnetFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELqsvegeggqll
Low Complexity Region (SEG)
MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQLL
Disordered region (IsUnstruct)
******FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE************
Disordered Region (DISOPRED)
MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK*KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWR*************
Disordered Region (DISEMBL)
MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL***********
Disordered Region (DISPRO)
MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
P21521	474	Synaptotagmin 1 OS=Drosop	yes	N/A	0.937	0.253	0.912	5e-64
P46097	422	Synaptotagmin-2 OS=Mus mu	yes	N/A	0.937	0.284	0.735	1e-46
Q8N9I0	419	Synaptotagmin-2 OS=Homo s	yes	N/A	0.937	0.286	0.735	2e-46
P29101	422	Synaptotagmin-2 OS=Rattus	yes	N/A	0.937	0.284	0.735	2e-46
P41823	428	Synaptotagmin-1 OS=Aplysi	N/A	N/A	0.937	0.280	0.694	4e-45
P47191	424	Synaptotagmin-1 OS=Gallus	no	N/A	0.937	0.283	0.702	2e-44
P24506	439	Synaptotagmin-B OS=Diplob	N/A	N/A	0.937	0.273	0.677	3e-44
Q5R4J5	419	Synaptotagmin-1 OS=Pongo	yes	N/A	0.937	0.286	0.702	4e-44
P21579	422	Synaptotagmin-1 OS=Homo s	no	N/A	0.937	0.284	0.702	4e-44
P48018	422	Synaptotagmin-1 OS=Bos ta	no	N/A	0.937	0.284	0.702	4e-44

>sp|P21521|SY65_DROME Synaptotagmin 1 OS=Drosophila melanogaster GN=Syt1 PE=1 SV=2

 Score =  242 bits (618), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/125 (91%), Positives = 120/125 (96%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN+NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFN
Sbjct: 199 KLEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFN 258

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETF FK +PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LC IDLAQTIEEWR+L SVE
Sbjct: 259 ETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTIDLAQTIEEWRDLVSVE 318

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 319 GEGGQ 323

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.
Drosophila melanogaster (taxid: 7227)

>sp|P46097|SYT2_MOUSE Synaptotagmin-2 OS=Mus musculus GN=Syt2 PE=1 SV=1

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 100/121 (82%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct: 150 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 209

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
           TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct: 210 TFTFK-VPYQELAGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 268

Query: 123 E 123
           E
Sbjct: 269 E 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Mus musculus (taxid: 10090)

>sp|Q8N9I0|SYT2_HUMAN Synaptotagmin-2 OS=Homo sapiens GN=SYT2 PE=1 SV=2

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 100/121 (82%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct: 147 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 206

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
           TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct: 207 TFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 265

Query: 123 E 123
           E
Sbjct: 266 E 266

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Homo sapiens (taxid: 9606)

>sp|P29101|SYT2_RAT Synaptotagmin-2 OS=Rattus norvegicus GN=Syt2 PE=1 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 100/121 (82%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct: 150 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 209

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
           TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct: 210 TFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 268

Query: 123 E 123
           E
Sbjct: 269 E 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Rattus norvegicus (taxid: 10116)

>sp|P41823|SY65_APLCA Synaptotagmin-1 OS=Aplysia californica GN=SYT1 PE=1 SV=2

 Score =  179 bits (455), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 100/121 (82%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF    LSV VIQA DLP +DM GTSDPYVKVYLLPDKKKK+ETKVHRKTLNPVFNE
Sbjct: 161 LDYDFQKGELSVNVIQAADLPGMDMSGTSDPYVKVYLLPDKKKKYETKVHRKTLNPVFNE 220

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
           +F FK VPYA+  +K L FA++DFDRFSKHDQIG+V+V L  IDL + +E+W++LQS + 
Sbjct: 221 SFTFK-VPYAEVGSKILTFAVYDFDRFSKHDQIGQVQVPLNSIDLGRVVEDWKDLQSPDT 279

Query: 123 E 123
           E
Sbjct: 280 E 280

Acts as inhibitor of neurotransmitter release. Overexpression leads to a decrease in the amplitude of the excitatory postsynaptic potential in dissected cholinergic and glutaminergic neurons while depletion with antisense oligonucleotides leads to an increase. Overexpression of isoform 1 blocks the reversal of synaptic depression by serotonin in sensory neurons.

Aplysia californica (taxid: 6500)

>sp|P47191|SYT1_CHICK Synaptotagmin-1 OS=Gallus gallus GN=SYT1 PE=2 SV=1

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 97/121 (80%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNPVFNE
Sbjct: 152 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPVFNE 211

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
            F FK VPY++   KTLV A++DFDRFSKHD IGE KVA+  +D     EEWR+LQS E 
Sbjct: 212 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEYKVAMNTVDFGHVTEEWRDLQSAEK 270

Query: 123 E 123
           E
Sbjct: 271 E 271

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Gallus gallus (taxid: 9031)

>sp|P24506|SY62_DIPOM Synaptotagmin-B OS=Diplobatis ommata GN=P65-B PE=1 SV=1

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 101/121 (83%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF AN L+V +IQA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKV +KTLNP FNE
Sbjct: 167 LDYDFQANQLTVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVQKKTLNPTFNE 226

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
           +FVFK VPY +   KTL+ A++DFDRFSKHD IG+V V + ++DL Q +EEWR+L+S E 
Sbjct: 227 SFVFK-VPYQELGGKTLMMAVYDFDRFSKHDCIGQVTVLMTKVDLGQQLEEWRDLESAEK 285

Query: 123 E 123
           E
Sbjct: 286 E 286

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Discopyge ommata (taxid: 7785)

>sp|Q5R4J5|SYT1_PONAB Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=2 SV=1

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 96/121 (79%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 147 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 206

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
            F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E 
Sbjct: 207 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 265

Query: 123 E 123
           E
Sbjct: 266 E 266

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Pongo abelii (taxid: 9601)

>sp|P21579|SYT1_HUMAN Synaptotagmin-1 OS=Homo sapiens GN=SYT1 PE=1 SV=1

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 96/121 (79%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 150 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 209

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
            F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E 
Sbjct: 210 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 268

Query: 123 E 123
           E
Sbjct: 269 E 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Homo sapiens (taxid: 9606)

>sp|P48018|SYT1_BOVIN Synaptotagmin-1 OS=Bos taurus GN=SYT1 PE=1 SV=1

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 96/121 (79%), Gaps = 1/121 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 150 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 209

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
            F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E 
Sbjct: 210 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 268

Query: 123 E 123
           E
Sbjct: 269 E 269

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
12658419	429	synaptotagmin [Manduca sexta]	0.960	0.286	0.960	7e-66
383860584	434	PREDICTED: synaptotagmin 1-like [Megachi	0.937	0.276	0.96	9e-66
332018156	436	Synaptotagmin 1 [Acromyrmex echinatior]	0.953	0.279	0.952	1e-65
270006365	444	synaptotagmin [Tribolium castaneum]	0.953	0.274	0.96	2e-65
357626340	419	synaptotagmin I [Danaus plexippus]	0.953	0.291	0.96	2e-65
225543472	444	synaptotagmin 1 [Tribolium castaneum] gi	0.953	0.274	0.96	2e-65
237648990	431	synaptotagmin I [Bombyx mori] gi|2237024	0.953	0.283	0.96	2e-65
333033753	424	synaptotagmin 1 [Gryllus bimaculatus]	0.953	0.287	0.944	6e-65
307206115	429	Synaptotagmin [Harpegnathos saltator]	0.937	0.279	0.936	8e-65
193713831	466	PREDICTED: synaptotagmin 1 isoform 1 [Ac	0.937	0.257	0.944	8e-65

>gi|12658419|gb|AAK01129.1|AF331039_1 synaptotagmin [Manduca sexta]

 Score =  254 bits (649), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 121/126 (96%), Positives = 124/126 (98%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN+NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFN
Sbjct: 160 KLEYDFNSNSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFN 219

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETFVFK VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQTIEEWRELQSVE
Sbjct: 220 ETFVFKNVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQTIEEWRELQSVE 279

Query: 122 GEGGQL 127
           GEGGQL
Sbjct: 280 GEGGQL 285

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860584|ref|XP_003705769.1| PREDICTED: synaptotagmin 1-like [Megachile rotundata]

 Score =  254 bits (648), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 120/125 (96%), Positives = 122/125 (97%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN
Sbjct: 162 KLEYDFNTNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 221

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETF FKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQTIEEWRELQSVE
Sbjct: 222 ETFTFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQTIEEWRELQSVE 281

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 282 GEGGQ 286

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018156|gb|EGI58762.1| Synaptotagmin 1 [Acromyrmex echinatior]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/125 (95%), Positives = 123/125 (98%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN+NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP+FN
Sbjct: 164 KLEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPIFN 223

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETF FKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQTIEEWRELQSVE
Sbjct: 224 ETFTFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQTIEEWRELQSVE 283

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 284 GEGGQ 288

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006365|gb|EFA02813.1| synaptotagmin [Tribolium castaneum]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/125 (96%), Positives = 122/125 (97%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFN
Sbjct: 173 KLEYDFNQNSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFN 232

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETFVFK +PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQTIEEWRELQSVE
Sbjct: 233 ETFVFKNIPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQTIEEWRELQSVE 292

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 293 GEGGQ 297

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626340|gb|EHJ76466.1| synaptotagmin I [Danaus plexippus]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/125 (96%), Positives = 123/125 (98%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN+NSLSVTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN
Sbjct: 147 KLEYDFNSNSLSVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 206

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETFVFK VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQTIEEWRELQSVE
Sbjct: 207 ETFVFKSVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQTIEEWRELQSVE 266

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 267 GEGGQ 271

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225543472|ref|NP_001139384.1| synaptotagmin 1 [Tribolium castaneum] gi|223702450|gb|ACN21656.1| synaptotagmin I isoform A [Tribolium castaneum]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/125 (96%), Positives = 122/125 (97%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFN
Sbjct: 173 KLEYDFNQNSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFN 232

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETFVFK +PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQTIEEWRELQSVE
Sbjct: 233 ETFVFKNIPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQTIEEWRELQSVE 292

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 293 GEGGQ 297

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|237648990|ref|NP_001153672.1| synaptotagmin I [Bombyx mori] gi|223702452|gb|ACN21657.1| synaptotagmin I isoform A [Bombyx mori]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/125 (96%), Positives = 123/125 (98%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN+NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFN
Sbjct: 159 KLEYDFNSNSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFN 218

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETFVFK VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQTIEEWRELQSVE
Sbjct: 219 ETFVFKNVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQTIEEWRELQSVE 278

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 279 GEGGQ 283

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|333033753|dbj|BAK23253.1| synaptotagmin 1 [Gryllus bimaculatus]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 118/125 (94%), Positives = 122/125 (97%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN+NSL+VTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFN
Sbjct: 153 KLEYDFNSNSLAVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFN 212

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETF FK VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQTIEEWRELQSVE
Sbjct: 213 ETFTFKNVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQTIEEWRELQSVE 272

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 273 GEGGQ 277

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206115|gb|EFN84195.1| Synaptotagmin [Harpegnathos saltator]

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 117/125 (93%), Positives = 123/125 (98%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           KLEYDFN+NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+P+FN
Sbjct: 157 KLEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPIFN 216

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETF FKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQ+DLAQTIEEWRELQSVE
Sbjct: 217 ETFTFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQVDLAQTIEEWRELQSVE 276

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 277 GEGGQ 281

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193713831|ref|XP_001944713.1| PREDICTED: synaptotagmin 1 isoform 1 [Acyrthosiphon pisum] gi|328711543|ref|XP_003244566.1| PREDICTED: synaptotagmin 1 isoform 2 [Acyrthosiphon pisum]

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 118/125 (94%), Positives = 121/125 (96%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           K+EYDF  N+LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN
Sbjct: 195 KMEYDFQGNTLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 254

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
           ETF FKG+PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LCQIDLAQTIEEWRELQSVE
Sbjct: 255 ETFQFKGIPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCQIDLAQTIEEWRELQSVE 314

Query: 122 GEGGQ 126
           GEGGQ
Sbjct: 315 GEGGQ 319

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0004242	474	Syt1 "Synaptotagmin 1" [Drosop	0.976	0.263	0.912	1.9e-58
MGI|MGI:99666	422	Syt2 "synaptotagmin II" [Mus m	0.937	0.284	0.735	1e-43
UNIPROTKB|G5E6N8	417	SYT2 "Uncharacterized protein"	0.937	0.287	0.735	1.7e-43
UNIPROTKB|Q8N9I0	419	SYT2 "Synaptotagmin-2" [Homo s	0.937	0.286	0.735	1.7e-43
UNIPROTKB|F1S5A0	362	SYT2 "Uncharacterized protein"	0.937	0.331	0.735	1.7e-43
RGD|3804	422	Syt2 "synaptotagmin II" [Rattu	0.937	0.284	0.735	1.7e-43
UNIPROTKB|P29101	422	Syt2 "Synaptotagmin-2" [Rattus	0.937	0.284	0.735	1.7e-43
UNIPROTKB|P41823	428	SYT1 "Synaptotagmin-1" [Aplysi	0.937	0.280	0.694	1.5e-42
UNIPROTKB|P47191	424	SYT1 "Synaptotagmin-1" [Gallus	0.937	0.283	0.702	6.6e-42
UNIPROTKB|P48018	422	SYT1 "Synaptotagmin-1" [Bos ta	0.937	0.284	0.702	1.1e-41

FB|FBgn0004242 Syt1 "Synaptotagmin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 114/125 (91%), Positives = 120/125 (96%)

Query:     2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
             KLEYDFN+NSL+VTVIQAE+LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL+PVFN
Sbjct:   199 KLEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLSPVFN 258

Query:    62 ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
             ETF FK +PYADAMNKTLVFAIFDFDRFSKHDQIGEVKV LC IDLAQTIEEWR+L SVE
Sbjct:   259 ETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTIDLAQTIEEWRDLVSVE 318

Query:   122 GEGGQ 126
             GEGGQ
Sbjct:   319 GEGGQ 323

GO:0007269 "neurotransmitter secretion" evidence=NAS;IMP

GO:0016192 "vesicle-mediated transport" evidence=IMP;TAS

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0030285 "integral to synaptic vesicle membrane" evidence=NAS

GO:0005509 "calcium ion binding" evidence=ISS;IDA

GO:0006887 "exocytosis" evidence=NAS

GO:0005544 "calcium-dependent phospholipid binding" evidence=TAS

GO:0048489 "synaptic vesicle transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=ISS;IDA;NAS

GO:0016020 "membrane" evidence=IEA;NAS

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0048488 "synaptic vesicle endocytosis" evidence=IDA;IMP

GO:0005215 "transporter activity" evidence=IEA

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IDA

GO:0060024 "rhythmic synaptic transmission" evidence=IDA

MGI|MGI:99666 Syt2 "synaptotagmin II" [Mus musculus (taxid:10090)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 89/121 (73%), Positives = 100/121 (82%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct:   150 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 209

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
             TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct:   210 TFTFK-VPYQELAGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 268

Query:   123 E 123
             E
Sbjct:   269 E 269

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|G5E6N8 SYT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 89/121 (73%), Positives = 100/121 (82%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct:   145 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 204

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
             TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct:   205 TFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 263

Query:   123 E 123
             E
Sbjct:   264 E 264

GO:0005886 "plasma membrane" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q8N9I0 SYT2 "Synaptotagmin-2" [Homo sapiens (taxid:9606)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 89/121 (73%), Positives = 100/121 (82%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct:   147 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 206

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
             TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct:   207 TFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 265

Query:   123 E 123
             E
Sbjct:   266 E 266

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1S5A0 SYT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 89/121 (73%), Positives = 100/121 (82%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct:    90 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 149

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
             TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct:   150 TFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 208

Query:   123 E 123
             E
Sbjct:   209 E 209

GO:0005886 "plasma membrane" evidence=IEA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

RGD|3804 Syt2 "synaptotagmin II" [Rattus norvegicus (taxid:10116)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 89/121 (73%), Positives = 100/121 (82%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct:   150 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 209

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
             TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct:   210 TFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 268

Query:   123 E 123
             E
Sbjct:   269 E 269

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA;ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005544 "calcium-dependent phospholipid binding" evidence=IEA;ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0019905 "syntaxin binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=TAS

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|P29101 Syt2 "Synaptotagmin-2" [Rattus norvegicus (taxid:10116)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 89/121 (73%), Positives = 100/121 (82%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF AN L+V V+QA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNP FNE
Sbjct:   150 LDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPAFNE 209

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
             TF FK VPY +   KTLV AI+DFDRFSKHD IGEVKV +  +DL Q IEEWR+LQ  E 
Sbjct:   210 TFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGGEK 268

Query:   123 E 123
             E
Sbjct:   269 E 269

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|P41823 SYT1 "Synaptotagmin-1" [Aplysia californica (taxid:6500)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 84/121 (69%), Positives = 100/121 (82%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF    LSV VIQA DLP +DM GTSDPYVKVYLLPDKKKK+ETKVHRKTLNPVFNE
Sbjct:   161 LDYDFQKGELSVNVIQAADLPGMDMSGTSDPYVKVYLLPDKKKKYETKVHRKTLNPVFNE 220

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
             +F FK VPYA+  +K L FA++DFDRFSKHDQIG+V+V L  IDL + +E+W++LQS + 
Sbjct:   221 SFTFK-VPYAEVGSKILTFAVYDFDRFSKHDQIGQVQVPLNSIDLGRVVEDWKDLQSPDT 279

Query:   123 E 123
             E
Sbjct:   280 E 280

GO:0000149 "SNARE binding" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0016079 "synaptic vesicle exocytosis" evidence=IDA

GO:0030285 "integral to synaptic vesicle membrane" evidence=IDA

GO:0045955 "negative regulation of calcium ion-dependent exocytosis" evidence=IDA

UNIPROTKB|P47191 SYT1 "Synaptotagmin-1" [Gallus gallus (taxid:9031)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 85/121 (70%), Positives = 97/121 (80%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKK+ETKVHRKTLNPVFNE
Sbjct:   152 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKTLNPVFNE 211

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
              F FK VPY++   KTLV A++DFDRFSKHD IGE KVA+  +D     EEWR+LQS E 
Sbjct:   212 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEYKVAMNTVDFGHVTEEWRDLQSAEK 270

Query:   123 E 123
             E
Sbjct:   271 E 271

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

UNIPROTKB|P48018 SYT1 "Synaptotagmin-1" [Bos taurus (taxid:9913)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 85/121 (70%), Positives = 96/121 (79%)

Query:     3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
             L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct:   150 LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 209

Query:    63 TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
              F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E 
Sbjct:   210 QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 268

Query:   123 E 123
             E
Sbjct:   269 E 269

GO:0042584 "chromaffin granule membrane" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29101	SYT2_RAT	No assigned EC number	0.7355	0.9375	0.2843	yes	N/A
P46097	SYT2_MOUSE	No assigned EC number	0.7355	0.9375	0.2843	yes	N/A
P21521	SY65_DROME	No assigned EC number	0.912	0.9375	0.2531	yes	N/A
Q8N9I0	SYT2_HUMAN	No assigned EC number	0.7355	0.9375	0.2863	yes	N/A
Q5R4J5	SYT1_PONAB	No assigned EC number	0.7024	0.9375	0.2863	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	4e-78
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	4e-52
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	3e-38
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	3e-38
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	1e-37
pfam00168	85	pfam00168, C2, C2 domain	4e-33
cd00030	102	cd00030, C2, C2 domain	7e-33
smart00239	101	smart00239, C2, Protein kinase C conserved region	8e-33
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	7e-32
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-30
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	1e-29
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-29
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	9e-29
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	2e-27
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-26
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-26
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	6e-26
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-26
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-25
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	9e-25
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	9e-25
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	3e-24
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	4e-24
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	1e-23
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	1e-22
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	6e-21
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	5e-17
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	8e-17
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-16
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-15
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-15
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-14
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-14
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	3e-14
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-14
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	5e-14
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-13
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	4e-13
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	4e-13
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	4e-13
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	8e-13
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	1e-12
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	8e-12
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	4e-11
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	1e-10
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-10
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	4e-10
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	7e-10
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	1e-09
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	1e-09
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-09
cd08680	124	cd08680, C2_Kibra, C2 domain found in Human protei	2e-09
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-09
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	3e-09
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	4e-09
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	4e-09
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	4e-09
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	5e-09
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	6e-09
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	7e-09
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	1e-08
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	2e-08
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	3e-08
cd08400	126	cd08400, C2_Ras_p21A1, C2 domain present in RAS p2	9e-08
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	2e-07
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	3e-07
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	3e-07
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	4e-07
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	6e-07
cd08395	120	cd08395, C2C_Munc13, C2 domain third repeat in Mun	8e-07
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	9e-07
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	9e-07
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	1e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-06
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	2e-06
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	3e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-06
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	6e-06
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	4e-05
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	9e-05
cd08691	137	cd08691, C2_NEDL1-like, C2 domain present in NEDL1	1e-04
cd08677	118	cd08677, C2A_Synaptotagmin-13, C2 domain	1e-04
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	0.003
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	0.003
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.004

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score =  225 bits (577), Expect = 4e-78
 Identities = 87/118 (73%), Positives = 101/118 (85%), Gaps = 1/118 (0%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
            L+YDF +N L+V +IQA DLPA+DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN
Sbjct: 8   SLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 67

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
           ETF FK VPY++  NKTLVF+++DFDRFSKHD IGEV+V L  +DL    EEWR+L+S
Sbjct: 68  ETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score =  160 bits (406), Expect = 4e-52
 Identities = 57/116 (49%), Positives = 83/116 (71%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           + YDF  ++L++ +++A +LPA D  GTSDP+VK+YLLPDKK K ETKV RK LNP +NE
Sbjct: 9   VSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNE 68

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           TF+F+G PY     + L   + D+DRFS++D IGEV + L ++DL +    W++L+
Sbjct: 69  TFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score =  125 bits (315), Expect = 3e-38
 Identities = 53/119 (44%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
             LEYD +   L+V +IQA +L   D  GT+DPY KV LLPD+    ++K+H+KTLNP F
Sbjct: 7   FSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEF 66

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
           +E+FVF  VP  +   +TL   ++DFD+FS+ + IG V++ L ++DL++ ++ WR++QS
Sbjct: 67  DESFVF-EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score =  125 bits (315), Expect = 3e-38
 Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 3/121 (2%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
            L Y+    +L V +I+  DLPA+D   GTSDPYVK+ LLP+K+ K +T+V RKT NPV+
Sbjct: 8   SLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVY 67

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQ 118
           +ETF F G+PY    + +L FA+  FDR+S+ D IGEV   L   DL     +   RE+Q
Sbjct: 68  DETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127

Query: 119 S 119
            
Sbjct: 128 P 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score =  123 bits (311), Expect = 1e-37
 Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           ++YD     L+V++I+A +LP         DP+VKV LLPD+++  ++KV RKT NP F+
Sbjct: 7   VQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFD 66

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           ETFVF+ V + +   +TL  +++D DRFS+H  IG V   L  +DL +    WR+L+
Sbjct: 67  ETFVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score =  110 bits (278), Expect = 4e-33
 Identities = 45/88 (51%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
          L VTVI A++LP  D+ G SDPYVKV L   KK   +TKV + TLNPV+NETF F+    
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 72 ADAMNKTLVFAIFDFDRFSKHDQIGEVK 99
            A    L   ++D+DRF K D IGEV 
Sbjct: 61 ELA---ELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  111 bits (278), Expect = 7e-33
 Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 6/107 (5%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L VTVI+A +LPA D+ G SDPYVKV L    K+KF+TKV + TLNPV+NETF F   P 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEF---PV 55

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI-DLAQTIEEWREL 117
            D  + TL   ++D DRFSK D +GEV++ L ++ D  +  E W  L
Sbjct: 56  LDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score =  110 bits (277), Expect = 8e-33
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVP 70
           +L+V +I A +LP  D GG SDPYVKV L  D K+K +TKV + TLNPV+NETF F+  P
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 114
              A    L   ++D DRF + D IG+V + L  + L    E+ 
Sbjct: 61  PELAE---LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score =  108 bits (273), Expect = 7e-32
 Identities = 51/124 (41%), Positives = 70/124 (56%), Gaps = 11/124 (8%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKF--ETKVHRKTLNP 58
           ++L YD   + L VTV+QA DLP  D G   +PYVKVYLLPD+ +K    TK  +KTLNP
Sbjct: 7   IQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNP 66

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI----EEW 114
            +N+TF +  V       +TL   ++D+DR  ++D +GE       IDLA  +      W
Sbjct: 67  EWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGE-----VVIDLADALLDDEPHW 121

Query: 115 RELQ 118
             LQ
Sbjct: 122 YPLQ 125

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score =  105 bits (265), Expect = 1e-30
 Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVF 60
           L YD   ++L  T+I+A+ L A+D  G SDPYVK+ LLP   K  K  TK   KT NP F
Sbjct: 8   LLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEF 67

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT 110
           NET  + G+   D   KTL   + D DRF  +D +GE ++ L ++   QT
Sbjct: 68  NETLTYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLKKLKPNQT 116

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score =  103 bits (258), Expect = 1e-29
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 5/122 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
           + + Y      L VTV +  +LP  D     DPYV++YLLPDK K  + +T V +  LNP
Sbjct: 7   LTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNP 66

Query: 59  VFNETFVFKGVPYADAMNKTLVFAI-FDFDRFSKH-DQIGEVKVALCQIDLAQTIEEWRE 116
           VF+ETF F  V   +   +TL  A+       S+    +G+V + L  +DL++   +W +
Sbjct: 67  VFDETFEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD 125

Query: 117 LQ 118
           L 
Sbjct: 126 LT 127

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score =  102 bits (257), Expect = 3e-29
 Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 3/98 (3%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 60
           L Y   A  L+V V++A +LP  D  G SDPYVKV LL   K  KK +T V + TLNPVF
Sbjct: 7   LSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
           NE F F  VP       +LV  + D D   +++ IG+V
Sbjct: 67  NEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQV 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score =  100 bits (252), Expect = 9e-29
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
           L Y++   SL V + +  +L   D     S+PYVKVYLLPDK K  K +T V + T NPV
Sbjct: 7   LSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV 66

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 114
           FNET  +  +  +    +TL  +++  DRF ++  +GEV++ L   DL     EW
Sbjct: 67  FNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEW 120

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 98.5 bits (246), Expect = 2e-27
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGV 69
           L V V +A++LPAL  GGTSD +VK YLLPDK K  K +T V +K++NPV+N TFV+ GV
Sbjct: 29  LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGV 88

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
              D     L   ++D D+ S +D +G V++ L          +W +    E
Sbjct: 89  SPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEE 140

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 95.9 bits (239), Expect = 1e-26
 Identities = 44/98 (44%), Positives = 69/98 (70%), Gaps = 3/98 (3%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-PDKK-KKFETKVHRKTLNPVF 60
           L Y+  AN ++V +I+A +L A+D+ GTSDPYVKV+L+  DK+ +K +T + ++TLNPVF
Sbjct: 8   LCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVF 67

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
           NE+F+F  +P       TL+  + D DR S++D IG++
Sbjct: 68  NESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKI 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 94.8 bits (236), Expect = 3e-26
 Identities = 40/100 (40%), Positives = 66/100 (66%), Gaps = 3/100 (3%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 60
           L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ + K  KK +T + ++TLNP +
Sbjct: 8   LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYY 67

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV 100
           NE+F F+ VP+       L+  + D+DR  K+D IG+V +
Sbjct: 68  NESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 94.0 bits (234), Expect = 6e-26
 Identities = 51/119 (42%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
           L+YD     L V VIQ +DL A D     SDPYVK YLLPDK    K +T V +KTLNPV
Sbjct: 8   LDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPV 67

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           FNET  +K V   +   + L  +++  D   ++  +GEV+V L   D + T   W  LQ
Sbjct: 68  FNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 94.3 bits (235), Expect = 6e-26
 Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 6/125 (4%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 59
            L+     N L+V V +A++L  +D  G SDPYVK+ L+PD   + K +TK  +KTLNPV
Sbjct: 5   YLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPV 64

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW-RELQ 118
           +NETF F   P AD  ++ L   ++D+DR +++D +G +   + ++ +   ++ W + L 
Sbjct: 65  WNETFTFDLKP-AD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL-IKMPVDGWYKLLN 121

Query: 119 SVEGE 123
             EGE
Sbjct: 122 QEEGE 126

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 90.7 bits (226), Expect = 7e-25
 Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 8/114 (7%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L+V VI AE+LP+ D  G SDP+VK YL  + +K F+TK  +KTLNPV+NE+F    VP 
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYL--NGEKVFKTKTIKKTLNPVWNESFE---VPV 55

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 125
              +   L   ++D+DR  K D +G   + L  ++  +T E    L  ++G+GG
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTE--LTLP-LDGQGG 106

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 91.1 bits (227), Expect = 9e-25
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----KKFETKVHRKTLN 57
           K  Y  +  SL V ++ A +L  LD  G+SDP+VKV LLP          +T+V +KTL 
Sbjct: 8   KAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLF 67

Query: 58  PVFNETFVFKGVPYADAMNK---TLVFAIFDFDRFSKHDQIGEVKVALCQI 105
           P+F+E+F F  VP  +  +     L+F + D+D    +D  GE  + L  I
Sbjct: 68  PLFDESFEFN-VP-PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 91.3 bits (227), Expect = 9e-25
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 5/117 (4%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVF 60
           L Y    N L+V V++A  LP +D+ G +DPYVKV L   KK+  K +T V + TLNPVF
Sbjct: 8   LCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVF 67

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           NE+FVF  +P  +  + ++ F + D DR +K++ IG  ++ L           W+E+
Sbjct: 68  NESFVFD-IPSEELEDISVEFLVLDSDRVTKNEVIG--RLVLGPKASGSGGHHWKEV 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 89.7 bits (223), Expect = 3e-24
 Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
           L Y+     L V +I+  +L A+D  G SDP+VK+YL PD  KK K +T+V +KTLNP F
Sbjct: 6   LMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEF 65

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
           NE F +  + ++D   KTL   ++D D    +D IG +
Sbjct: 66  NEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGL 102

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 89.3 bits (222), Expect = 4e-24
 Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 59
           KL   +   +L V V+ A++LP LD G   DPYVK YLLPD  K  K +TKV RKT NP 
Sbjct: 5   KLSISYKNGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT 63

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 114
           FNE  V+ G+P  D   + L  +++  D   +++ +G V + L ++DL+Q  E+W
Sbjct: 64  FNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKW 118

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 88.1 bits (219), Expect = 1e-23
 Identities = 50/116 (43%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
            EYD +A  L+VTVI+A+D+P  D GG S   V + LLP KK++ +TKV R   NPVFNE
Sbjct: 9   FEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRGP-NPVFNE 67

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           TF F  V   +  N  L F ++  +R  K   IGE  V L Q++L      W  L+
Sbjct: 68  TFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 85.6 bits (212), Expect = 1e-22
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGT-SDPYVKVYLLPDK--KKKFETKVHRKTLNPV 59
           L YD+   SL+V V +  +L   D     S+PYVK YLLPDK  + K +T + R T NPV
Sbjct: 8   LSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPV 67

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           +NET  +  + ++    +TL  +++ +DRF ++  +GEV++ L   +     EE   L 
Sbjct: 68  YNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 81.4 bits (201), Expect = 6e-21
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 3/94 (3%)

Query: 9   ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVF 66
           A  L++T+I+A +L A+D+ G SDPYVKV L+ + +  KK +T V + TLNP +NE  VF
Sbjct: 13  AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVF 72

Query: 67  KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV 100
             VP  +  N +L+ A+ D+DR   ++ IG  +V
Sbjct: 73  D-VPPENVDNVSLIIAVVDYDRVGHNELIGVCRV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 71.0 bits (175), Expect = 5e-17
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 15/97 (15%)

Query: 14  VTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVH--RKTLNPVFNETFVFKG-VP 70
           V V++A +L   D  G SDPY+K+ L    KKK   + +    TLNPVF + F  +  +P
Sbjct: 4   VYVVRARNLQPKDPNGKSDPYLKIKLG---KKKINDRDNYIPNTLNPVFGKMFELEATLP 60

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 107
                N  L  ++ D+D     D IGE       IDL
Sbjct: 61  ----GNSILKISVMDYDLLGSDDLIGETV-----IDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 70.7 bits (173), Expect = 8e-17
 Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNP 58
           + L Y  +A  L+V +I+A+ L   DM   SDP+VK+ L+   K  K  +T   R T++P
Sbjct: 5   LSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDP 64

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
            +NE+F FK VP  +  N +LVF ++  +  S +D IG +
Sbjct: 65  FYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRI 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 69.6 bits (171), Expect = 2e-16
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 6/102 (5%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVP 70
            L + + +  +L A D GGTSDPYVK       K  +++K   K LNPV++E F    +P
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKFKY--GGKTVYKSKTIYKNLNPVWDEKFT---LP 55

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 112
             D   + L   +FD+DR    D +G   V L  ++L +  E
Sbjct: 56  IEDV-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTE 96

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 67.4 bits (165), Expect = 2e-15
 Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 14/129 (10%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKV-YLLPDKKKKFETKVHRKTLNPVFNETFVFKG-- 68
           LSV V++  DL AL   GT DP+ +V      K     TKV +KT NP F+E F F+   
Sbjct: 1   LSVRVLECRDL-ALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 69  ----------VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
                     V   D     L   ++     S  D +GEV++ L  +  A + + W  LQ
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119

Query: 119 SVEGEGGQL 127
             E  G + 
Sbjct: 120 PREAPGTRS 128

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 10/100 (10%)

Query: 8    NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 67
            N+  L++ +   E+LP+ D  G SDP+VK++L  ++K  ++TKV +KTLNPV+NE F   
Sbjct: 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFL--NEKSVYKTKVVKKTLNPVWNEEFT-- 1093

Query: 68   GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 107
             +   + +   L   + D+D   K+D +G       +IDL
Sbjct: 1094 -IEVLNRVKDVLTINVNDWDSGEKNDLLGT-----AEIDL 1127

Length = 1227

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 12  LSVTVIQAEDLPALDMG--GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGV 69
           L V V++A+DL A D    G SDPY  + +     ++F+T+    TLNP +N    F   
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEF--- 56

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE---WRELQSV 120
           P   A N+ L   ++D DRF+  D +GE  +AL ++       +   W  L+S 
Sbjct: 57  PIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 63.9 bits (156), Expect = 3e-14
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 17/118 (14%)

Query: 12  LSVTVIQAEDLPALDMG------GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETF- 64
           L + VI+A+DL A D        G SDPYV V +     + F++KV ++ LNP +NE + 
Sbjct: 3   LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKENLNPKWNEVYE 59

Query: 65  -VFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
            V   VP      + L   +FD D   K D +G + + L  ++    I+EW  L+ V+
Sbjct: 60  AVVDEVP-----GQELEIELFDEDP-DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVK 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 63.4 bits (155), Expect = 3e-14
 Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 9/110 (8%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVP 70
           SL + +++A++LP+    GT DPY  V L  D+ +   TK   + LNP + E FVF   P
Sbjct: 1   SLRLRILEAKNLPS---KGTRDPYCTVSL--DQVEVARTKT-VEKLNPFWGEEFVFD-DP 53

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
             D    TL F   D    SK   I   KVAL ++DL Q  +EW  L  V
Sbjct: 54  PPDVTFFTLSFYNKDKR--SKDRDIVIGKVALSKLDLGQGKDEWFPLTPV 101

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 63.4 bits (155), Expect = 4e-14
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 12  LSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVP 70
           L VT+ +A DLP  D G G+SDPYV        K  + T++ RK LNPV+ ET+     P
Sbjct: 3   LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTP 62

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 102
                 + L   ++D DRF+  D++G V++ L
Sbjct: 63  DEVKAGERLSCRLWDSDRFTADDRLGRVEIDL 94

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 63.0 bits (154), Expect = 5e-14
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 18/110 (16%)

Query: 14  VTVIQAEDLPAL--------DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFV 65
           + +    DLP L        DM    DP+V +      ++ F T   R TLNPVFNE   
Sbjct: 5   MEIKSITDLPPLKNMTRTGFDM----DPFVIISF---GRRVFRTSWRRHTLNPVFNERLA 57

Query: 66  FKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ-IDLAQTIEEW 114
           F+  P+    N  + F + D D+FS +D +    +++ + ++ A   +  
Sbjct: 58  FEVYPH--EKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPDPE 105

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 61.7 bits (150), Expect = 2e-13
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 6/107 (5%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L   V++A DL   D  GTSDP+V+V+      +  ET V +K+  P +NE F F+ +  
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFELMEG 58

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           AD+    L   ++D+D  SK+D +G+V  ++  +  A+  E W  L 
Sbjct: 59  ADSP---LSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLL 102

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 61.3 bits (149), Expect = 4e-13
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVF 60
           L Y   A  L+V V++A +L   +   T+DP+VKVYLL D +K  K +T V R   NP+F
Sbjct: 8   LSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIF 67

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
           NE  +F  VP     + +L   + +     K   +G V +      +   +  W ++ +
Sbjct: 68  NEAMIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMG--LSHWNQMLA 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 61.6 bits (150), Expect = 4e-13
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V V++  +L   D   +SDPYV + L   K K   T+V +K LNPV+NE      VP 
Sbjct: 4   LKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVK---TRVIKKNLNPVWNEELTL-SVP- 57

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 102
                  L   +FD D FSK D +GE ++ L
Sbjct: 58  --NPMAPLKLEVFDKDTFSKDDSMGEAEIDL 86

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----KKFETKVHRKTLNPVFNETFVFK 67
           L V V+   DL   D+ G SDPYVK+ L            +TK  +KTLNP +NE F F+
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 68  GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 102
             P        L+F +FD +R ++ D +G+V+V L
Sbjct: 62  VNP----REHRLLFEVFDENRLTRDDFLGQVEVPL 92

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 60.0 bits (146), Expect = 8e-13
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V VI+A  L A D+GG SDP+  + L+     + +T    KTLNP +N+ F F   P 
Sbjct: 3   LQVKVIRASGLAAADIGGKSDPFCVLELVNA---RLQTHTIYKTLNPEWNKIFTF---PI 56

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
            D ++  L   ++D D+  K + +G+V + L  I
Sbjct: 57  KD-IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSI 89

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 59.2 bits (144), Expect = 1e-12
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 12  LSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN-ETFVFKGV 69
           L V V+ A DLP +D     +D +V+V         ++T V +K+LNPV+N E F F+ V
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFE-V 56

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 102
              +  ++ L   + D D +S +D IG+V + L
Sbjct: 57  DDEELQDEPLQIRVMDHDTYSANDAIGKVYIDL 89

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 57.2 bits (139), Expect = 8e-12
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 13  SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK-GVPY 71
            V VI+A  L     GG  DP VKV +   KK    T V + T  P +NE F F      
Sbjct: 7   RVRVIEARQLV----GGNIDPVVKVEVGGQKKY---TSVKKGTNCPFYNEYFFFNFHESP 59

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKV 100
            +  +K +  +++D         IG  K+
Sbjct: 60  DELFDKIIKISVYDSRSLRSDTLIGSFKL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.7 bits (135), Expect = 4e-11
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 8/117 (6%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           +++ +++ ++LP +D  G SDPYVK  L     +K+++KV  KTLNP + E F       
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLH---L 55

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQLL 128
            D  ++ L   ++D D   K + IG  ++ L  +   QT     EL+  +GEG  LL
Sbjct: 56  FDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELE--DGEGSLLL 110

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 17/123 (13%)

Query: 18  QAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY---ADA 74
           QA DL A D  G SDP+ +V  L   +   ET+V ++TL+P +++T +F  V      + 
Sbjct: 9   QARDLLAADKSGLSDPFARVSFLNQSQ---ETEVIKETLSPTWDQTLIFDEVELYGSPEE 65

Query: 75  MNK---TLVFAIFDFDRFSKHDQIG------EVKVALCQIDLAQTIEEWRELQSVEGEGG 125
           + +    +V  +FD D   K + +G       VK+ L +    +   +W  +       G
Sbjct: 66  IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKL--QWFPIYKGGQSAG 123

Query: 126 QLL 128
           +LL
Sbjct: 124 ELL 126

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 12/93 (12%)

Query: 11 SLSVTVIQAEDLP--ALDMGGTSDPYVKVYLL---PDKKKKFETK-VHRKTLNPVFNETF 64
          +L++ +I  + LP    D G   DPYV+V +     D   KF+TK V     NPV+NETF
Sbjct: 3  TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 65 VFKGVPYAD-AMNKTLVFAIFDFDRFSKHDQIG 96
           F  V   + A    L F ++D D     D +G
Sbjct: 63 EFD-VTVPELAF---LRFVVYDEDSG-DDDFLG 90

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 53.5 bits (129), Expect = 4e-10
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 8/110 (7%)

Query: 12  LSVTVIQAEDL-PALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKG 68
           L V VI+A  L           PYVKVYLL  KK   K +TK+ RKTL+P++ +  VF  
Sbjct: 31  LEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90

Query: 69  VPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
            P      KTL   ++ D+ R  K   +G  ++ L  +DL+  +  W +L
Sbjct: 91  SPT----GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKL 136

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 13 SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVF 66
           V V  AE L   D GG +DPYV +     + +   + V + TL+P F+   +F
Sbjct: 6  QVHVHSAEGLSKQDSGGGADPYVIIK---CEGESVRSPVQKDTLSPEFDTQAIF 56

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 17  IQAEDLPALDMGGTSDPYVKVY-LLPDKKKK--FETKVHRKTLNPVFNETFVFKGVPYAD 73
              + L   D  G SDP++++     D      + T+V + TLNPV+     F  +P   
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FT-IPLQK 62

Query: 74  A----MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 114
                 ++ +   ++D+D   KHD IGE +  L ++ L  +  E+
Sbjct: 63  LCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDEL-LKSSPLEF 106

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 3  LEYDFNANSLSVTVIQAEDLPALDMGGTS-DPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
          L Y+F  + L +T+    +L   D       PYVKV LLPDK    K +T V + T+NPV
Sbjct: 8  LHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPV 67

Query: 60 FNETFVFK 67
          FNET  + 
Sbjct: 68 FNETLKYV 75

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 21/56 (37%), Positives = 36/56 (64%)

Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 67
          L+V V++A ++   D+  T D YV+++L     +K  TK  + ++NPV+NETF F+
Sbjct: 2  LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR 57

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176062 cd08680, C2_Kibra, C2 domain found in Human protein Kibra

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 2  KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP---DKKKKFETKVHRKTLNP 58
           L YD   +SL ++V Q  +L AL +   S  YV+V LLP        F TK       P
Sbjct: 6  GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKP 65

Query: 59 VFNETFVFKGVPYADAMNKTL 79
          VFNE F    +       KTL
Sbjct: 66 VFNEVFRVP-ISSTKLYQKTL 85

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that promotes SWH pathway activity. Kibra contains two amino-terminal WW domains, an internal C2-like domain, and a carboxy-terminal glutamic acid-rich stretch. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 124

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 13 SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFE---TKVHRKTLNPVFNETFVFKGV 69
          ++ +++AE+L A    G SDPYV    L D   K     T+    TLNP ++E F  + V
Sbjct: 4  TIRIVRAENLKADSSNGLSDPYV---TLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-V 59

Query: 70 PYADAMNKTLVFAIFDFDRFSKHDQIG 96
          P  + +   +   ++D     KHD  G
Sbjct: 60 PAGEPL--WISATVWDRSFVGKHDLCG 84

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 28/58 (48%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVF 66
          LSV VI+  DL      GT DPY  V L+   KK   K  TKV +KT NP F+E F F
Sbjct: 2  LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKR-TKVKKKTNNPQFDEAFYF 56

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 17/122 (13%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPY--VKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKG 68
           SL + +++ ++LPA D+ G+SDPY  VKV    D +    T    KTLNP + E +    
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCIVKV----DNEVIIRTATVWKTLNPFWGEEYTVHL 56

Query: 69  VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-AQTIEEWREL------QSVE 121
            P       T+ F + D D  S+ D IG+V +    I    + I+ W  L      + V+
Sbjct: 57  PPGF----HTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQ 112

Query: 122 GE 123
           GE
Sbjct: 113 GE 114

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 17  IQAEDLPALDMGGTSDPYVKVYLLPDKKKKFE----TKVHRKTLNPVFNETFVFKGVPYA 72
           I   +L   D+   SDP+V VY+      ++     T+V +  LNP F  TF      Y 
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTV---DYY 63

Query: 73  DAMNKTLVFAIFDFD----RFSKHDQIGEVKVALCQI 105
               + L F ++D D      S HD +GE +  L +I
Sbjct: 64  FEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V V+ A+DL   D  G+S  YV++     KK+   T+   K LNPV+NE  VF     
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKR---TRTKPKDLNPVWNEKLVFNVSDP 58

Query: 72  ADAMNKTLVFAIFDFDRFS-KHDQIGEVKVALCQI 105
           +   N  L   +++  R   +   +G V+++    
Sbjct: 59  SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSF 93

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 1  MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFE--TKVHRKTLNP 58
          +KL  +     L++ V++A+ L + +  GT + YVK+ L PDK+ +F   T     + NP
Sbjct: 3  LKLSIEGQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANP 61

Query: 59 VFNETFVF 66
          +F+ETF F
Sbjct: 62 LFHETFSF 69

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 50.4 bits (121), Expect = 6e-09
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPV 59
           LEY+     LSV VI+  +   L M    D YVK+ LL    +   K +T + R   +P 
Sbjct: 8   LEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE 67

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIG 96
           F ETFVF+ V        TL+F++++  +  + + IG
Sbjct: 68  FKETFVFQ-VALFQLSEVTLMFSVYNKRKMKRKEMIG 103

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 49.9 bits (119), Expect = 7e-09
 Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 67
          +S+TV+ A+ L A D  GTSDPYV V +   KK+   TK   + LNPV+NE F F+
Sbjct: 3  ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKR---TKTIPQNLNPVWNEKFHFE 55

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 36/112 (32%), Positives = 45/112 (40%), Gaps = 21/112 (18%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL------NPVFNETFV 65
           L V +I A+ L   D  G  DPYV +        +  T+  +  +      NP +NE F 
Sbjct: 3   LEVLLISAKGLQDTDFLGKIDPYVII--------QCRTQERKSKVAKGDGRNPEWNEKFK 54

Query: 66  FKGVPYADAMNKT-LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 116
           F  V Y      T L+  I D D FS  D IGE       I L    EE  E
Sbjct: 55  FT-VEYPGWGGDTKLILRIMDKDNFSDDDFIGEAT-----IHLKGLFEEGVE 100

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 16/96 (16%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L + + +A DL  L+  G  DPYV+V  L +   K  T     TLNPV++E      VP 
Sbjct: 3   LRLHIRKANDLKNLEGVGKIDPYVRV--LVNGIVKGRTVTISNTLNPVWDEVLY---VPV 57

Query: 72  ADAMNKTLVFAIFDF-----DRFSKHDQIGEVKVAL 102
             + N+ +   + D+     DR      +G V++ +
Sbjct: 58  T-SPNQKITLEVMDYEKVGKDRS-----LGSVEINV 87

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 26/81 (32%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--------KKKKFE--------------- 48
           L VTVI+A+ L A D+ G SDPY  + ++P          KK+                 
Sbjct: 30  LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89

Query: 49  ---TKVHRKTLNPVFNETFVF 66
              T+V  +TLNPV+NETF F
Sbjct: 90  IKVTEVKPQTLNPVWNETFRF 110

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1)

 Score = 47.0 bits (112), Expect = 9e-08
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVP 70
           SL + V++A  LP   +     PY  + L  ++ K   TKV R+  NPV++E FVF  +P
Sbjct: 5   SLQLNVLEAHKLP---VKHVPHPYCVISL--NEVKVARTKV-REGPNPVWSEEFVFDDLP 58

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
             D  + T+  ++ +  + SK  +I EV V L ++   Q  +EW  L S
Sbjct: 59  -PDVNSFTI--SLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSS 104

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 13/101 (12%)

Query: 26  DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN---ETFVFKGVPYADAMNKTLVFA 82
              G   PY ++YL  + K  + T+V +KT NP +N   E  V       D     +   
Sbjct: 8   SKTGLLSPYAELYL--NGKLVYTTRVKKKTNNPSWNASTEFLVT------DRRKSRVTVV 59

Query: 83  IFDFDRFSKHDQIGEVKVALCQ-IDLAQTIEEWRELQSVEG 122
           + D DR      +G V ++L   ID     ++W  L     
Sbjct: 60  VKD-DRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQ 99

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK--TLNPVFNETFVFKG 68
           +L +T+I AEDL  +++ G    Y  V++ P  K+   T V R   T NP +NET  F  
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQS--TPVDRDGGT-NPTWNETLRF-P 56

Query: 69  VP--YADAMNKTLVFAIFDFDRFSKHDQ-IGEVKVALCQI 105
           +           L   ++  +R S  D+ IGEV+V L  +
Sbjct: 57  LDERLLQQGRLALTIEVYC-ERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 7/114 (6%)

Query: 13  SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE--TFVFKGVP 70
            VTV+QA  L      GT+D YV + L    K+K+ T V  KT +PV+ E  +F   G+ 
Sbjct: 2   QVTVLQARGLLCKGKSGTNDAYVIIQL---GKEKYSTSVKEKTTSPVWKEECSFELPGLL 58

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE--EWRELQSVEG 122
             +    TL   +   +       +G+V + L  +D  +      W +L+S  G
Sbjct: 59  SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG 112

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 13/100 (13%)

Query: 12  LSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFE-TKVHRKTLNPVFNETFVFKGV 69
           L+VT+  A  L   D +GGT DPYV   +    +++   TKV + T NPV+NET      
Sbjct: 4   LAVTIKSARGLKGSDIIGGTVDPYVTFSI--SNRRELARTKVKKDTSNPVWNETKYI--- 58

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
              +++ + L   ++DF+   K   IG       + DL+ 
Sbjct: 59  -LVNSLTEPLNLTVYDFNDKRKDKLIGTA-----EFDLSS 92

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 19/100 (19%)

Query: 11 SLSVTVIQAEDLPALD---MGGT-----------SDPYVKVYLLPDKKKKFETKVHRKTL 56
               + +AEDLP +D   M               DPYV+V       +K +T V + + 
Sbjct: 1  RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSY 57

Query: 57 NPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIG 96
          NP +NE  VF        + + +   I D+DR    D IG
Sbjct: 58 NPEWNEQIVFP--EMFPPLCERIKIQIRDWDRVGNDDVIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 44.3 bits (105), Expect = 8e-07
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYL----LPDKKKKFETKVHRKTLNPVFNETFVF 66
          ++V V+ A DL      G   P+V+V L    L DKK+KF TK      +P +NETF F
Sbjct: 2  VTVKVVAANDL-KWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQF 59

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 43.7 bits (104), Expect = 9e-07
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 11/110 (10%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V +  A++LP         PYV++  +    +K  +KV  +T NPV+ E F F     
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVEL-TVGKTTQK--SKVKERTNNPVWEEGFTFL---V 55

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQS 119
            +  N+ L   + D         +G + + L ++      T+++   L +
Sbjct: 56  RNPENQELEIEVKDDKTGK---SLGSLTLPLSELLKEPDLTLDQPFPLDN 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 44.2 bits (105), Expect = 9e-07
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 10/93 (10%)

Query: 15  TVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVF--KGVPYA 72
            V+  ++LP L   G  D   KV     KKK   T+V    LNPV+NETF +   G P  
Sbjct: 1   LVVSLKNLPGL--KGKGDRIAKVTFRGVKKK---TRVLENELNPVWNETFEWPLAGSPDP 55

Query: 73  DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
           D     L   + D+++  ++  IG   V+L  +
Sbjct: 56  DES---LEIVVKDYEKVGRNRLIGSATVSLQDL 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V +++  DL   +  G SDPY +V +   + K   TKV   TLNP +N +  F     
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHK---TKVVSDTLNPKWNSSMQFF---V 70

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIG--EVKVA 101
            D     L   +FD D FS  D +G  E++VA
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVA 102

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 12  LSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGV 69
           + V +  AE L   D  + GT DPY+ V      +   +T+V + TLNPV+NETF    +
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTF--SDRVIGKTRVKKNTLNPVWNETFY---I 492

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 102
              ++    L  +++DF+ F     +G  ++ L
Sbjct: 493 L-LNSFTDPLNLSLYDFNSFKSDKVVGSTQLDL 524

Length = 1227

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 18/123 (14%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKV-HRKTLNPVFNETFVFKGVP 70
           L V V++A +LP        DPY  + +    KK   TK   R   +P ++E   F    
Sbjct: 3   LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKK---TKTDFRGGQHPEWDEELRF---E 56

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-----WRELQSVEGEGG 125
             +     L  A+FD D   K D IG+      ++DL+  ++E     W EL       G
Sbjct: 57  ITEDKKPILKVAVFD-DDKRKPDLIGD-----TEVDLSPALKEGEFDDWYELTLKGRYAG 110

Query: 126 QLL 128
           ++ 
Sbjct: 111 EVY 113

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 60
           L Y+   N L+V V++A  L  LD   T   YVKV L+   K  K  +T+V     +P F
Sbjct: 8   LTYNPTLNRLTVVVLRARGLRQLDHAHT-SVYVKVSLMIHNKVVKTKKTEVVDGAASPSF 66

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV 100
           NE+F FK V        +L  ++       K   +G V +
Sbjct: 67  NESFSFK-VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           + V+V +A DL     GG SDPY  V +  +   K+ T     TLNP++NE      + Y
Sbjct: 713 IRVSVRKANDLRNEIPGGKSDPYATVLV--NNLVKYRTIYGSSTLNPIWNE------ILY 764

Query: 72  ADAMNKTLVFAI--FDFDRFSKHDQIGEVKVA 101
               +K     +   D++       +GEV + 
Sbjct: 765 VPVTSKNQRLTLECMDYEESGDDRNLGEVNIN 796

Length = 1227

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 11  SLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGV 69
           SL + + +A++LP         D Y  V L  D+++ F TK   K+L P F E F F+ +
Sbjct: 1   SLKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQEEVFRTKTVEKSLCPFFGEDFYFE-I 57

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQSVE 121
           P        L F I+D D   +   IG  KVA+ + DL      + W  LQ V+
Sbjct: 58  PRTFRH---LSFYIYDRDVLRRDSVIG--KVAIKKEDLHKYYGKDTWFPLQPVD 106

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVP 70
           + +TV+ A+ L   D+    DP+  + +  D  +   T V +KTL+P +NE F     P
Sbjct: 1  KVRLTVLCADGLAKRDLFRLPDPFAVITV--DGGQTHSTDVAKKTLDPKWNEHFDLTVGP 58

Query: 71 YADAMNKTLVFAIFDFDRFSKHDQ 94
               +  +   +FD  +F K DQ
Sbjct: 59 -----SSIITIQVFDQKKFKKKDQ 77

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKV-HRKTLNPVFNETFVFKGV- 69
           L VTVI+A+DL   D     + +VK  L     +   T+    +  NP +NE  +F    
Sbjct: 2   LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN---QVLRTRPSQTRNGNPSWNEELMFVAAE 58

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 106
           P+ D     L+ ++ D    +K + +G   + L  I+
Sbjct: 59  PFED----HLILSVEDRVGPNKDEPLGRAVIPLNDIE 91

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176073 cd08691, C2_NEDL1-like, C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 12/71 (16%)

Query: 11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK----------TLNPVF 60
          S S++ +QA +L    M    DPYVK+ + P K+  F    H            T+NPV+
Sbjct: 2  SFSLSGLQARNLKK-GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVW 60

Query: 61 -NETFVFKGVP 70
            E FVF G+P
Sbjct: 61 HREQFVFVGLP 71

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 137

>gnl|CDD|176059 cd08677, C2A_Synaptotagmin-13, C2 domain

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-PDKKKKFETKVHRKTLNPVFN 61
           L YD     L V +++AE++    +    + Y+   +   + +K+ +T + +  L+  + 
Sbjct: 7   LSYDKQKAELHVNILEAENI---SVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWE 63

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           E  VF  +P  ++++ TL   +   DRFS+H  +GE+++ L  + +     +W +L
Sbjct: 64  EELVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This CD contains the first C2 repeat, C2A, and has a type-I topology. Length = 118

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
          L V  I+A  L   +  G+S+PY  V  + +  +K+++   + T NP ++E F+F+    
Sbjct: 1  LLVKNIKANGL--SEAAGSSNPYC-VLEMDEPPQKYQSSTQKNTSNPFWDEHFLFE---- 53

Query: 72 ADAMNKTLVFAIFD 85
              +K L+F ++D
Sbjct: 54 LSPNSKELLFEVYD 67

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 8/95 (8%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVP 70
            L +TV  A+           DPYV+V    D +   +T+V +KT NP +NE F     P
Sbjct: 3   QLQITVESAKLKSNSKSFKP-DPYVEV--TVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP 59

Query: 71  YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
            +     TL F ++          +GE  + L  I
Sbjct: 60  QS-----TLEFKVWSHHTLKADVLLGEASLDLSDI 89

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVF 66
          L V V++A  LPA     ++DP V+V L   K     TK   +T NP +N+ F F
Sbjct: 2  LYVRVVKARGLPA----NSNDPVVEVKLGNYKGS---TKAIERTSNPEWNQVFAF 49

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.97
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.96
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.96
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.96
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.96
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.96
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.96
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.96
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.96
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.95
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.95
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.95
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.95
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.95
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.95
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.95
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.95
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.94
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.94
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.94
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.94
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.94
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.93
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.93
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.93
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.93
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.93
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.93
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.92
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.92
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.92
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.92
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.92
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.9
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.9
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.9
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.9
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.9
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.9
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.9
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.89
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.89
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.89
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.89
KOG1028|consensus	421		99.88
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.88
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.88
KOG0696|consensus	683		99.88
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.88
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.87
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.87
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.87
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.87
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.87
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.87
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.86
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.86
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.86
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.86
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.86
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.86
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.86
KOG1030|consensus	168		99.86
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.85
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.85
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.85
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.85
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.85
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.85
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.85
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.85
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.85
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.84
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.84
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.84
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.84
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.83
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.82
KOG1028|consensus	421		99.82
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.81
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.81
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.81
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.81
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.8
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.79
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.79
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.79
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.78
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.77
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.75
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.74
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.74
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.72
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.7
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.7
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.7
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.67
PLN03008	868	Phospholipase D delta	99.65
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.63
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.6
KOG2059|consensus	800		99.56
PLN02223	537	phosphoinositide phospholipase C	99.53
KOG1011|consensus	1283		99.53
PLN02952	599	phosphoinositide phospholipase C	99.52
KOG0905|consensus	1639		99.47
PLN02230	598	phosphoinositide phospholipase C 4	99.45
PLN02222	581	phosphoinositide phospholipase C 2	99.42
KOG0169|consensus	746		99.4
PLN02228	567	Phosphoinositide phospholipase C	99.38
KOG1328|consensus	1103		99.37
PLN02270	808	phospholipase D alpha	99.3
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.29
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	99.24
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.2
KOG1328|consensus	1103		99.16
KOG1031|consensus	1169		99.13
KOG1013|consensus	362		99.12
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.05
KOG2059|consensus	800		98.97
KOG1264|consensus	1267		98.87
KOG1013|consensus	362		98.84
KOG1011|consensus	1283		98.71
PLN02352	758	phospholipase D epsilon	98.7
KOG1326|consensus	1105		98.64
KOG1326|consensus	1105		98.5
KOG2060|consensus	405		98.5
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.46
PLN02964	644	phosphatidylserine decarboxylase	98.23
KOG3837|consensus	523		98.17
KOG1265|consensus	1189		98.13
KOG1327|consensus	529		98.06
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.64
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.58
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.54
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.34
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.26
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	97.11
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.89
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.74
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	96.63
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.44
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.21
PF15627	156	CEP76-C2: CEP76 C2 domain	96.11
KOG1452|consensus	442		95.98
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.83
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.92
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	94.5
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	93.87
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	91.16
KOG1327|consensus	529		90.38
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	90.3
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	88.06
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	85.43
KOG0906|consensus	843		82.86
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	80.08

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.97  E-value=3.1e-30  Score=147.70  Aligned_cols=113  Identities=24%  Similarity=0.515  Sum_probs=102.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCC-CCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD-KKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      |+|+|.+..+.|+|+|++|++|+ .  .+.+|||+++++.+. +..+.+|++.+.+.+|.|||+|.|+ ++.+++...++
T Consensus         5 fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-v~~~~l~~~tL   80 (118)
T cd08677           5 YSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-LPEEESLDGTL   80 (118)
T ss_pred             EEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe-CCHHHhCCcEE
Confidence            68999999999999999999998 2  355899999999764 3357789999999999999999999 99888888999


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  117 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L  117 (128)
                      .+.|||++.++++++||++.+++.++..+.+.++|.+|
T Consensus        81 ~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          81 TLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            99999999999999999999999988777788899875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.96  E-value=1.1e-28  Score=143.80  Aligned_cols=116  Identities=28%  Similarity=0.449  Sum_probs=105.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |+|.|++..+.|.|.|.+|+||++.+..+.+|||+++++.|+..   .+.+|++.+.+.+|.|||+|.|+ ++.+++...
T Consensus         5 ~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L~~~   83 (124)
T cd08680           5 IGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTKLYQK   83 (124)
T ss_pred             EEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHHhhcC
Confidence            58999999999999999999999887778899999999998773   47889999999999999999999 988888889


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEeccccccc-ccccceEec
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWREL  117 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~-~~~~~w~~L  117 (128)
                      .|.++||+++..+++++||.+.++|+++... .....||+|
T Consensus        84 ~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          84 TLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            9999999999999999999999999999554 457789986

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.96  E-value=2.8e-28  Score=142.87  Aligned_cols=117  Identities=44%  Similarity=0.668  Sum_probs=104.7

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |++.|.+..+.|.|+|++|++|++.+.. +.+|||+++.+.+..  ..+.+|++++++.+|.|||+|.|. +...++...
T Consensus         6 ~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~~~l~~~   84 (125)
T cd08393           6 FALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VEREELPTR   84 (125)
T ss_pred             EEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCHHHhCCC
Confidence            5899999999999999999999998865 789999999998765  345789999999999999999999 776666677


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecc
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  118 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~  118 (128)
                      .|.++|||++..+++++||++.++|.++........||+|+
T Consensus        85 ~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          85 VLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             EEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            89999999999999999999999999998777788999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.96  E-value=1.6e-27  Score=139.69  Aligned_cols=117  Identities=74%  Similarity=1.223  Sum_probs=105.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|++..+.|+|+|++|++|+..+..+.+|||+++.+.+......+|+++..+.+|.|+|.|.|. +...++....|.
T Consensus         7 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~   85 (124)
T cd08385           7 FSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-VPYSELGNKTLV   85 (124)
T ss_pred             EEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe-CCHHHhCCCEEE
Confidence            5789999999999999999999988878889999999998766667889999999999999999999 765555556899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  118 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~  118 (128)
                      ++|||++.++++++||++.++|.++..+...++|++|.
T Consensus        86 ~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          86 FSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             EEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            99999999999999999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.96  E-value=1.3e-27  Score=139.88  Aligned_cols=118  Identities=42%  Similarity=0.651  Sum_probs=106.8

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|++..+.|.|+|++|++|++.+..+..+||+++.+.+...++.+|++.+. .+|.|||+|.|..+..+++....|.
T Consensus         7 ~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~   85 (124)
T cd08389           7 VAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALR   85 (124)
T ss_pred             EEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEE
Confidence            589999999999999999999999887888899999988887777888998877 9999999999985666677778899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      +.||+++.+++++++|.+.++|+++..+.....|++|++
T Consensus        86 ~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          86 FRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             EEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            999999999999999999999999988888889999975

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.96  E-value=2.2e-27  Score=139.01  Aligned_cols=117  Identities=36%  Similarity=0.627  Sum_probs=104.0

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCC-CCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |++.|++..+.|.|.|++|++|++.+. .+.+|||+++.+.+.+.  .+.+|++++++.+|.|||+|.|. ++..++...
T Consensus         6 ~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~l~~~   84 (125)
T cd04029           6 FSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHSQLETR   84 (125)
T ss_pred             EEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHHHhCCC
Confidence            589999999999999999999997754 47899999999987653  36789999999999999999999 876666667


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecc
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  118 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~  118 (128)
                      .|.+.|||++..+++++||++.++|..+......+.|++|.
T Consensus        85 ~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          85 TLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            89999999999999999999999999998888889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.96  E-value=1.9e-27  Score=139.28  Aligned_cols=118  Identities=45%  Similarity=0.831  Sum_probs=106.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|++..+.|.|+|.+|++|+..+..+.+|||+++.+.+.+....+|++++++.+|.|+|+|.|. ++..++....|.
T Consensus         7 ~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~l~   85 (124)
T cd08387           7 FSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-VPPQELPKRTLE   85 (124)
T ss_pred             EEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe-CCHHHhCCCEEE
Confidence            5789999999999999999999988888889999999997666667889999999999999999998 776655567899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      +.|||++.++++++||++.++|+++..+...+.|++|+.
T Consensus        86 i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~  124 (124)
T cd08387          86 VLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS  124 (124)
T ss_pred             EEEEECCCCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence            999999999999999999999999987778899999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.96  E-value=1.8e-27  Score=138.77  Aligned_cols=114  Identities=41%  Similarity=0.754  Sum_probs=100.5

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |++.|+  .+.|.|.|++|++|++.+ .+.+|||+++.+.+...  .+.+|++++++.+|.|||+|.|..++..++....
T Consensus         6 ~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~   82 (122)
T cd08381           6 LSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRV   82 (122)
T ss_pred             EEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCE
Confidence            578888  799999999999999998 88999999999987543  4678999999999999999999832555566678


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  117 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L  117 (128)
                      |.++|||++..+++++||++.++|.++..+.....||+|
T Consensus        83 L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          83 LQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             EEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            999999999999999999999999999887778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.96  E-value=2.4e-27  Score=139.11  Aligned_cols=117  Identities=32%  Similarity=0.499  Sum_probs=103.3

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |++.|++..+.|.|+|.+|++|++.+.. +.+||||++++.|...  .+.+|+++.++.+|.|||+|.|. ++..++...
T Consensus         6 ~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~~~l~~~   84 (128)
T cd08392           6 FALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEADLLSSR   84 (128)
T ss_pred             EEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCHHHhCCc
Confidence            5899999999999999999999988764 8899999999987653  36789999999999999999999 877777778


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEeccccccc---ccccceEecc
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLA---QTIEEWRELQ  118 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~---~~~~~w~~L~  118 (128)
                      .|.+.||+++.++++++||++.|+|.++...   .....||+|.
T Consensus        85 ~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          85 QLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             EEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            9999999999999999999999999988543   4667899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.95  E-value=8.4e-27  Score=137.04  Aligned_cols=119  Identities=47%  Similarity=0.789  Sum_probs=103.4

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      |++.|.+..+.|+|+|++|++|+..+.. +.+||||++.+.+...++.+|+++.++.+|.|+|+|.|..++..++....|
T Consensus         7 ~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L   86 (128)
T cd08388           7 FSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSL   86 (128)
T ss_pred             EEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEE
Confidence            5789999999999999999999987765 789999999998766667889999999999999999994365555555689


Q ss_pred             EEEEEEccCCCCCceeEEEEEeccccccc--ccccceEeccc
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS  119 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~--~~~~~w~~L~~  119 (128)
                      .+.||+++.++++++||++.++|.++...  +....|.+|++
T Consensus        87 ~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          87 HFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             EEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            99999999999999999999999998554  66788999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.95  E-value=1.3e-27  Score=141.38  Aligned_cols=119  Identities=30%  Similarity=0.466  Sum_probs=105.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+|.|.+..+.|.|+|++|++|++.+..+.+|||+++.+.+++..  +.+|++++.+.+|.|||+|.|. ++..++....
T Consensus         6 ~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~~l~~~~   84 (136)
T cd08406           6 LSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAIVLQDLS   84 (136)
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHHHhCCcE
Confidence            689999999999999999999999887889999999999876554  5689999999999999999999 8877777889


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.|+||+++.++++++||++.+...  ..+...++|.++...++
T Consensus        85 l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~  126 (136)
T cd08406          85 LRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLR  126 (136)
T ss_pred             EEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCC
Confidence            9999999999999999999999765  35677889999877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.95  E-value=2.5e-27  Score=140.18  Aligned_cols=119  Identities=25%  Similarity=0.342  Sum_probs=104.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCC--CCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMN   76 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~   76 (128)
                      |+|+|.+..++|.|.|++|+||.+.+.  .+.+|||+++++.+++.+  +.+|++.+.+.+|.|||.|.|. ++.+++..
T Consensus         6 ~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~-v~~~~L~~   84 (138)
T cd08407           6 LSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE-LPSELLAA   84 (138)
T ss_pred             EEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE-CCHHHhCc
Confidence            689999999999999999999998873  244899999999876543  6789999999999999999999 98888878


Q ss_pred             CeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         77 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        77 ~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      ..|.++|||++.++++++||++.+.+..  .|....+|.++...++
T Consensus        85 ~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~  128 (138)
T cd08407          85 SSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPR  128 (138)
T ss_pred             cEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCC
Confidence            8999999999999999999999999875  5667789999876544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.95  E-value=1.8e-26  Score=135.38  Aligned_cols=119  Identities=48%  Similarity=0.937  Sum_probs=104.5

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|.+..+.|+|+|.+|++|+..+..+..|||+++.+.+.+....+|+++.++.+|.|+|+|.|...+.+.+....|.
T Consensus         7 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~   86 (125)
T cd08386           7 FSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLY   86 (125)
T ss_pred             EEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEE
Confidence            58999999999999999999999888788899999999876666678899999999999999999973333334456799


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      ++|||++..+++++||++.+++.++..+.....|++|.+
T Consensus        87 ~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          87 LQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             EEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            999999999999999999999999988888899999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.95  E-value=9.9e-27  Score=136.15  Aligned_cols=119  Identities=14%  Similarity=0.286  Sum_probs=100.5

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCC-CCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTL-NPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~-~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |+|+|.|..++|+|.|++|+||++......+|||+++++...+.+  +.+|++.+.+. +|.|||+|.|+ ++.+. ...
T Consensus         5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~-~~v   82 (135)
T cd08692           5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQE-HGI   82 (135)
T ss_pred             EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCchh-hee
Confidence            689999999999999999999998766677799999999766554  67899999885 69999999999 87654 356


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      .+.|++||++..+++++||++.+..+.. .+.+.++|.++...++
T Consensus        83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr  126 (135)
T cd08692          83 QFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPE  126 (135)
T ss_pred             EEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCC
Confidence            7899999999999999999999998764 4456789999866543

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.95  E-value=4.8e-26  Score=135.66  Aligned_cols=116  Identities=34%  Similarity=0.541  Sum_probs=99.9

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |+|.|  ..+.|.|+|++|++|.+.+ ..+.+|||+++++.+++.  .+.+|++++.+.+|.|||+|.|. +.   +...
T Consensus        22 lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-v~---l~~~   95 (146)
T cd04028          22 LGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-VS---PTGK   95 (146)
T ss_pred             EEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-Ec---CCCC
Confidence            46777  5789999999999998764 467899999999987664  37789999999999999999999 66   3457


Q ss_pred             eEEEEEE-EccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         78 TLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        78 ~l~v~v~-~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      .|.++|| +++.+.++++||.+.|+|+.+..+.....||+|.+...
T Consensus        96 ~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~  141 (146)
T cd04028          96 TLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS  141 (146)
T ss_pred             EEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence            8999999 57788889999999999999977777889999998754

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.95  E-value=3.8e-26  Score=134.29  Aligned_cols=117  Identities=35%  Similarity=0.660  Sum_probs=103.7

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |++.|.+..+.|+|+|++|++|+..+..+.+|||+++.+.+.+  ....+|++++++.+|.|+|+|.|. +...++....
T Consensus         7 ~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~~l~~~~   85 (127)
T cd04030           7 LTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLEELKRRT   85 (127)
T ss_pred             EEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHHHhcCCE
Confidence            5899999999999999999999998888899999999997654  347789999999999999999999 7766565678


Q ss_pred             EEEEEEEccCC--CCCceeEEEEEecccccccccccceEecc
Q psy12095         79 LVFAIFDFDRF--SKHDQIGEVKVALCQIDLAQTIEEWRELQ  118 (128)
Q Consensus        79 l~v~v~~~~~~--~~~~~lG~~~~~l~~l~~~~~~~~w~~L~  118 (128)
                      +.+.||+++.+  +++++||++.++|.++..+....+||+|.
T Consensus        86 l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          86 LDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             EEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            99999999875  68899999999999998888889999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.95  E-value=4.9e-26  Score=133.13  Aligned_cols=116  Identities=38%  Similarity=0.674  Sum_probs=102.4

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |++.|++..+.|.|+|.+|++|+..+ ..+.+|||+++.+.+...  ...+|+++.++.+|.|+|+|.|. +...++...
T Consensus         5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~l~~~   83 (123)
T cd08521           5 FSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQLETR   83 (123)
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHHhCCC
Confidence            57899999999999999999999887 677899999999876543  46789999999999999999998 776555567


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  117 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L  117 (128)
                      .+.+.||+++..+++++||++.++|.++..+.....||+|
T Consensus        84 ~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          84 TLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             EEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            8999999999999999999999999999777778899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.94  E-value=7.4e-26  Score=132.39  Aligned_cols=118  Identities=41%  Similarity=0.756  Sum_probs=104.4

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      +++.|++..+.|.|+|.+|++|+..+ ..+.+|||+++.+.+.+....+|+++.++.+|.|+|.|.|. ++...+....|
T Consensus         5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-i~~~~l~~~~l   83 (123)
T cd08390           5 FSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-VSFKELQRRTL   83 (123)
T ss_pred             EEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE-cCHHHhcccEE
Confidence            57999999999999999999999887 57789999999987766666789999999999999999998 76555445689


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      .|.||+++..+++++||++.++|.++........|++|.+
T Consensus        84 ~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          84 RLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             EEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            9999999998889999999999999988888889999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.94  E-value=2.8e-25  Score=130.27  Aligned_cols=117  Identities=44%  Similarity=0.680  Sum_probs=98.6

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |++.|++..+.|.|+|++|++|...+..+.+|||+++.+.+..  ....+|+++.++.+|.|+|+|.|..+...++....
T Consensus         7 ~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~   86 (125)
T cd04031           7 IQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERT   86 (125)
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCE
Confidence            5789999999999999999999988878889999999996543  24678999999999999999999833434444578


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  118 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~  118 (128)
                      |.++|||++..+++++||++.++|.+. ......+||+|+
T Consensus        87 l~~~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~  125 (125)
T cd04031          87 LEVTVWDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ  125 (125)
T ss_pred             EEEEEEeCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence            999999999999999999999999983 334457899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.94  E-value=9.9e-26  Score=133.50  Aligned_cols=120  Identities=33%  Similarity=0.580  Sum_probs=103.3

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+|.|.+..+.|.|+|++|++|++.+..+.+|||+++.+.+...  .+.+|+++..+.+|.|+|+|.|. +...++....
T Consensus         4 ~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l~~~~   82 (133)
T cd08384           4 VSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDLAKKT   82 (133)
T ss_pred             EEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHhCCCE
Confidence            58999999999999999999999988888899999999976442  36789999999999999999998 7665555578


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      |.++|||++..+++++||++.+++..  .++...+|+++...++.
T Consensus        83 l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~  125 (133)
T cd08384          83 LEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDK  125 (133)
T ss_pred             EEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCC
Confidence            99999999998899999999999975  45567899998776543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.94  E-value=7.3e-26  Score=134.48  Aligned_cols=120  Identities=28%  Similarity=0.434  Sum_probs=105.4

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+|.|++..++|.|+|.+|++|++.+ .+.+|||+++.+.+.+.  ...+|++..++.+|.|||.|.|. ++.+++....
T Consensus         6 ~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-i~~~~l~~~~   83 (137)
T cd08409           6 ISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VTSRQLDTAS   83 (137)
T ss_pred             EEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-CCHHHhCccE
Confidence            57999999999999999999999887 77799999999976543  35689999999999999999999 8877777788


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.++||+++..+++++||++.+.......+...++|.++...++
T Consensus        84 L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~  127 (137)
T cd08409          84 LSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPK  127 (137)
T ss_pred             EEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCC
Confidence            99999999999999999999999777777788899999877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.94  E-value=8.4e-26  Score=134.19  Aligned_cols=120  Identities=31%  Similarity=0.542  Sum_probs=103.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      ++++|++..++|.|+|++|+||++.+..+.+|||+++.+.+...   .+.+|++...+.+|.|||+|.|. ++.+++...
T Consensus         6 ~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~~~l~~~   84 (138)
T cd08408           6 LGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQLSEV   84 (138)
T ss_pred             EEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCHHHhCcc
Confidence            58999999999999999999999988888899999999987443   25689999999999999999999 887777778


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      .+.+.||+.+..+++++||++.+++.... .....+|+++...++
T Consensus        85 ~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~  128 (138)
T cd08408          85 TLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKG  128 (138)
T ss_pred             EEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCC
Confidence            99999999999999999999999876543 234578999876544

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.93  E-value=5.2e-25  Score=133.96  Aligned_cols=119  Identities=39%  Similarity=0.637  Sum_probs=100.0

Q ss_pred             CeEEEec------------CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEE
Q psy12095          1 MKLEYDF------------NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVF   66 (128)
Q Consensus         1 ~~~~y~~------------~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f   66 (128)
                      |+|.|+|            ..+.|.|+|++|++|+..+..+.+|||+++.+.+..  ...++|+++.++.+|.|+|+|.|
T Consensus         6 ~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f   85 (162)
T cd04020           6 VALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVY   85 (162)
T ss_pred             EEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEE
Confidence            5789999            558999999999999998878899999999986643  34788999999999999999999


Q ss_pred             cccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095         67 KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        67 ~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      ..+...++....|.|.|||++.++++++||++.+++..+........|++|.+
T Consensus        86 ~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          86 DGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             ecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            73334445556899999999999999999999999999866555677777654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.93  E-value=4.6e-25  Score=128.06  Aligned_cols=113  Identities=29%  Similarity=0.443  Sum_probs=96.5

Q ss_pred             eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      .+.|+...+.|.|+|++|++|++.+ .+.+|||+++.+.++...  +.+|+++..+.+|.|||+|.|. ++..+.. ..+
T Consensus         4 ~l~~~~~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~~~-~~l   80 (119)
T cd08685           4 KLSIEGQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERDYQ-KRL   80 (119)
T ss_pred             EEEEEEcCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHHhC-CEE
Confidence            5677778999999999999999887 778999999999876543  6689999999999999999998 7655443 468


Q ss_pred             EEEEEEccCCC-CCceeEEEEEecccccccccccceEec
Q psy12095         80 VFAIFDFDRFS-KHDQIGEVKVALCQIDLAQTIEEWREL  117 (128)
Q Consensus        80 ~v~v~~~~~~~-~~~~lG~~~~~l~~l~~~~~~~~w~~L  117 (128)
                      .++||+++... ++++||.+.|+|.++..+...++||.|
T Consensus        81 ~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          81 LVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             EEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            89999998765 478999999999999877778899976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.93  E-value=3.2e-25  Score=131.76  Aligned_cols=119  Identities=37%  Similarity=0.612  Sum_probs=102.9

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+++|++..+.|.|+|++|++|+..+..+.+|||+++.+.+.+.  ...+|++++++.+|.|+|+|.|. ++..+.....
T Consensus         6 ~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~~~~~~~   84 (136)
T cd08404           6 LSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSEELEDIS   84 (136)
T ss_pred             EEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHHHhCCCE
Confidence            57999999999999999999999988888999999999865543  25678999999999999999999 7765555577


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      +.|+|||++.++++++||.+.+++..  .+....+|++|.+.++
T Consensus        85 l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~  126 (136)
T cd08404          85 VEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPR  126 (136)
T ss_pred             EEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCC
Confidence            99999999999999999999999988  4567789999976644

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.93  E-value=4.2e-25  Score=131.24  Aligned_cols=119  Identities=38%  Similarity=0.706  Sum_probs=102.0

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+++|++..+.|.|+|.+|++|...+..+.+|||+++.+.+.+.  ...+|+++.++.+|.|+|+|.|. ++.+.+....
T Consensus         6 ~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~~~~~~~   84 (136)
T cd08405           6 LSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLERLRETT   84 (136)
T ss_pred             EEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHHHhCCCE
Confidence            58999999999999999999999888788999999999865432  35689999999999999999998 7655555568


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.|+|||++.++++++||++.+++...  +...++|++|...++
T Consensus        85 l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~  126 (136)
T cd08405          85 LIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPR  126 (136)
T ss_pred             EEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCC
Confidence            999999999999999999999999876  556788999877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.93  E-value=4.7e-25  Score=131.04  Aligned_cols=119  Identities=34%  Similarity=0.692  Sum_probs=102.0

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |++.|.+..+.|+|+|++|++|+..+..+.+|||+++.+.+.+.  ...+|+++.++.+|.|+|+|.|. ++..++....
T Consensus         6 ~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~   84 (136)
T cd08402           6 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFEQIQKVH   84 (136)
T ss_pred             EEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHHHhCCCE
Confidence            58999999999999999999999888888999999999865433  35678889999999999999998 7665555568


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.++|||++.++++++||.+.+++...  +....+|+++...+.
T Consensus        85 l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~  126 (136)
T cd08402          85 LIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASPR  126 (136)
T ss_pred             EEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCCC
Confidence            999999999999999999999999764  556789999876653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.93  E-value=4.8e-25  Score=130.68  Aligned_cols=120  Identities=38%  Similarity=0.613  Sum_probs=101.7

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |++.|++..+.|+|+|++|++|+..+..+.+|||+++.+.+.+.  ...+|+++.++.+|.|+|+|.|. ++.+......
T Consensus         5 ~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~~~~~~   83 (134)
T cd08403           5 FSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPENVDNVS   83 (134)
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHHhCCCE
Confidence            68999999999999999999999988888999999999865443  36788888899999999999998 7655555567


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      +.++|||++..+++++||.+.+++.  ..+....+|+++...++.
T Consensus        84 l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~  126 (134)
T cd08403          84 LIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRK  126 (134)
T ss_pred             EEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCC
Confidence            9999999999999999999999876  345567899998766543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.92  E-value=3.6e-24  Score=123.95  Aligned_cols=111  Identities=29%  Similarity=0.389  Sum_probs=93.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeC----CCCCeeecceeecCCCCeecceEEEcccCCC-CCCCCeEEEEEEE
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLP----DKKKKFETKVHRKTLNPVFNETFVFKGVPYA-DAMNKTLVFAIFD   85 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~----~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~-~~~~~~l~v~v~~   85 (128)
                      +|+|+|++|++|+..+ .+.+|||+++.+..    ...++.+|+++.++.+|.|||+|.|. +..+ .+....|.+.|||
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEE
Confidence            4899999999999876 48899999999842    22345789999999999999999999 6543 3445679999999


Q ss_pred             ccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      ++..+++++||++.++|.++..++....|++|.+...+
T Consensus        79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~  116 (120)
T cd08395          79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM  116 (120)
T ss_pred             ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence            99888899999999999999988888899999876543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.92  E-value=2.9e-24  Score=127.30  Aligned_cols=119  Identities=39%  Similarity=0.601  Sum_probs=103.3

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+++|++..+.|.|.|.+|++|+..+..+..|||+++.+.+...  ...+|+++..+.+|.|+++|.|. +....+....
T Consensus         5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~l~~~~   83 (134)
T cd00276           5 LSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQLEEVS   83 (134)
T ss_pred             EEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHHhCCcE
Confidence            57999999999999999999999888788899999999976543  35689999999999999999998 7665544578


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.|+||+.+..+++++||.+.+++++  .+...++|++|...++
T Consensus        84 l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~  125 (134)
T cd00276          84 LVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPR  125 (134)
T ss_pred             EEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCC
Confidence            99999999988889999999999999  6677889999987754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.92  E-value=7.4e-24  Score=124.38  Aligned_cols=106  Identities=30%  Similarity=0.487  Sum_probs=90.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCC---CCCCCeEEEEEEEccC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYA---DAMNKTLVFAIFDFDR   88 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~---~~~~~~l~v~v~~~~~   88 (128)
                      ++|+|++|++|+..+..+.+|||+++.+   +..+.+|+++..+.+|.|||.|.|. ++..   +.....|.+.||+++.
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l---~~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~   76 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQL---GKEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNL   76 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEE---CCeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccc
Confidence            5799999999998888889999999998   3456789999999999999999998 6542   2345689999999999


Q ss_pred             CCCCceeEEEEEeccccc--ccccccceEeccccc
Q psy12095         89 FSKHDQIGEVKVALCQID--LAQTIEEWRELQSVE  121 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~--~~~~~~~w~~L~~~~  121 (128)
                      +++|++||++.++|.++.  .+.....||+|.+..
T Consensus        77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~  111 (126)
T cd08682          77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP  111 (126)
T ss_pred             cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCC
Confidence            989999999999999986  556678999998643

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.92  E-value=2.5e-24  Score=127.65  Aligned_cols=120  Identities=33%  Similarity=0.550  Sum_probs=99.8

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |++.|.+..+.|+|+|++|++|...+..+.+|||+++.+.++..  ...+|++++++.+|.|+|+|.|. ++..+.....
T Consensus         5 ~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~l~~~~   83 (135)
T cd08410           5 LSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEELENVS   83 (135)
T ss_pred             EEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHHhCCCE
Confidence            58999999999999999999999988888999999999855432  35689999999999999999999 7766665567


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      +.|+|||++..+++++||++.+...... +...++|+.|.+.++
T Consensus        84 l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~  126 (135)
T cd08410          84 LVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQR  126 (135)
T ss_pred             EEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCC
Confidence            9999999999999999999887653332 224689999877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.92  E-value=1.3e-23  Score=121.84  Aligned_cols=104  Identities=23%  Similarity=0.408  Sum_probs=89.3

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeec-CCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~-~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      |.|+|+|++|++++..+ .+.+||||++.+   +.++.+|+++.. +.+|.|||+|.|. +...   ...|.|+|||++.
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l---g~~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d~   73 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV---GHAVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDERA   73 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEE---CCEEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCCC
Confidence            68999999999887766 689999999999   456678999875 7899999999998 6532   2579999999999


Q ss_pred             CCCCceeEEEEEecc-cccccccccceEeccccc
Q psy12095         89 FSKHDQIGEVKVALC-QIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~-~l~~~~~~~~w~~L~~~~  121 (128)
                      +++|++||.+.+++. .+..+...+.|++|.+..
T Consensus        74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~  107 (121)
T cd04016          74 FTMDERIAWTHITIPESVFNGETLDDWYSLSGKQ  107 (121)
T ss_pred             CcCCceEEEEEEECchhccCCCCccccEeCcCcc
Confidence            999999999999996 577787789999998754

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.90  E-value=8.6e-23  Score=119.14  Aligned_cols=104  Identities=24%  Similarity=0.328  Sum_probs=89.8

Q ss_pred             EEEEEEEEecC---CCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095         11 SLSVTVIQAED---LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus        11 ~l~v~i~~a~~---l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      .|.|+|++|++   |...+..+.+|||+.+.+   +.++.+|+++..+.+|.|||+|.|. +...   ...|.|.|||++
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~---g~~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d~d   73 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKY---GPKWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFDNS   73 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEE---CCEEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEECC
Confidence            37899999999   777787899999999998   4567789999999999999999998 5432   247999999998


Q ss_pred             CCC------CCceeEEEEEecccccccccccceEeccccc
Q psy12095         88 RFS------KHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        88 ~~~------~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      ..+      .|++||++.++|..+..+.....||+|.+..
T Consensus        74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~  113 (126)
T cd08379          74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN  113 (126)
T ss_pred             CccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC
Confidence            863      8999999999999998888889999998643

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.90  E-value=8.3e-23  Score=122.34  Aligned_cols=109  Identities=37%  Similarity=0.504  Sum_probs=90.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccC-------------CCCCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVP-------------YADAM   75 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~-------------~~~~~   75 (128)
                      .|+|+|++|++|..  ..+.+||||++.+.+...  ...+|+++..+.+|.|||+|.|. +.             ..+..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE-EecccccccccccCCccccc
Confidence            48899999999988  467899999999965432  46789999999999999999998 53             23333


Q ss_pred             CCeEEEEEEEccCCCCCceeEEEEEeccccccc-ccccceEecccccC
Q psy12095         76 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWRELQSVEG  122 (128)
Q Consensus        76 ~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~-~~~~~w~~L~~~~~  122 (128)
                      ...+.|.||+++..++++|||++.|+|..+..+ .....||+|.+.+.
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~  125 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE  125 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence            467999999999888999999999999999876 56789999988753

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.90  E-value=9e-23  Score=118.54  Aligned_cols=111  Identities=25%  Similarity=0.368  Sum_probs=92.6

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      |.|+|+|.+|++|+..+..+.+|||+++.+.   ....+|+++. .+.+|.|+|.|.|. +...  ....|.++|||++.
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~   74 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDDDK   74 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCC
Confidence            5799999999999988888899999999983   3556788775 57899999999998 6543  24679999999988


Q ss_pred             CCCCceeEEEEEecccccccccccceEecccccCCCCcC
Q psy12095         89 FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQL  127 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~  127 (128)
                      .+ +++||++.+++.++..+....+|++|.+.++..|+|
T Consensus        75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i  112 (118)
T cd08681          75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEV  112 (118)
T ss_pred             CC-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEE
Confidence            76 899999999999987776778999998876666654

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.90  E-value=6.8e-23  Score=120.46  Aligned_cols=107  Identities=27%  Similarity=0.380  Sum_probs=89.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCC-CCCCCCeEEEEEEEccCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY-ADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~-~~~~~~~l~v~v~~~~~~   89 (128)
                      .|+|+|++|++|.+.+..+.+|||+++.+.   .+..+|+++.++.+|.|||.|.|. +.. .......|.+.||+++.+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~   76 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRS   76 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCC
Confidence            489999999999988877889999999984   356789999999999999999998 542 223346799999999887


Q ss_pred             C-CCceeEEEEEeccccc-ccccccceEeccccc
Q psy12095         90 S-KHDQIGEVKVALCQID-LAQTIEEWRELQSVE  121 (128)
Q Consensus        90 ~-~~~~lG~~~~~l~~l~-~~~~~~~w~~L~~~~  121 (128)
                      . .+++||++.+++.++. .+....+||+|...+
T Consensus        77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~  110 (127)
T cd04022          77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG  110 (127)
T ss_pred             cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC
Confidence            6 8899999999999986 566678999998753

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.90  E-value=1.5e-22  Score=117.72  Aligned_cols=107  Identities=27%  Similarity=0.455  Sum_probs=92.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      |+|+|++|++|+..+..+.+|||+++.+.+.+..+.+|+++.++.+|.|+|+|.|. +...  ....+.|.|||++.. +
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~-~   77 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV-M   77 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC-C
Confidence            78999999999988877889999999985444567789999999999999999998 6543  235799999999988 8


Q ss_pred             CceeEEEEEecccccccccccceEecccccC
Q psy12095         92 HDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      +++||++.+++..+..+.....|++|.+.+.
T Consensus        78 ~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~  108 (119)
T cd04036          78 DDHLGTVLFDVSKLKLGEKVRVTFSLNPQGK  108 (119)
T ss_pred             CcccEEEEEEHHHCCCCCcEEEEEECCCCCC
Confidence            8999999999999988888899999987643

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.90  E-value=4.9e-22  Score=116.21  Aligned_cols=116  Identities=41%  Similarity=0.577  Sum_probs=96.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|.+..+.|+|+|.+|++|+..+..+.+|||+++.+.+..  ....+|+++..+.+|.|++.|.|..+...+.....
T Consensus         6 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~   85 (123)
T cd04035           6 FTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKT   85 (123)
T ss_pred             EEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCE
Confidence            4789999999999999999999988777889999999986543  34688999999999999999999524433444568


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  117 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L  117 (128)
                      +.+++||++.. .+++||.+.++|+++..+.....|++|
T Consensus        86 l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          86 LRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             EEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence            99999999988 889999999999999776665556543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.90  E-value=3.1e-22  Score=115.94  Aligned_cols=104  Identities=31%  Similarity=0.469  Sum_probs=91.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS   90 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~   90 (128)
                      .++|+|.+|++|+..+..+.+|||+++.+   +....+|+++..+.+|.|+|.|.|. +...  ....+.+.|||++..+
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~v~v~d~~~~~   74 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLH-LFDD--QSQILEIEVWDKDTGK   74 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEE---CCEeEecccccCCCCCceeEEEEEE-ecCC--CCCEEEEEEEECCCCC
Confidence            37899999999999887888999999998   3456789999999999999999998 5432  2468999999999998


Q ss_pred             CCceeEEEEEecccccccccccceEecccc
Q psy12095         91 KHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      ++++||++.++|+++..+.....|++|.+.
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~  104 (116)
T cd08376          75 KDEFIGRCEIDLSALPREQTHSLELELEDG  104 (116)
T ss_pred             CCCeEEEEEEeHHHCCCCCceEEEEEccCC
Confidence            999999999999999888888899999876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.89  E-value=1.8e-22  Score=115.89  Aligned_cols=104  Identities=33%  Similarity=0.570  Sum_probs=89.1

Q ss_pred             EEEEEEEecCCCCCCC-CCCCCCeEEEEEeCCCCCeeecceeecCCCCee-cceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         12 LSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF-NETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~-~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      |.|+|++|++|+..+. .+.+|||+++.+.   ....+|+++.++.+|.| +|.|.|. ++..++....|.|+|||++..
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~   76 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTY   76 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCC
Confidence            5799999999998763 6788999999984   36788999999999999 9999998 765544456899999999999


Q ss_pred             CCCceeEEEEEecccccc---cccccceEeccc
Q psy12095         90 SKHDQIGEVKVALCQIDL---AQTIEEWRELQS  119 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~---~~~~~~w~~L~~  119 (128)
                      +++++||++.+++.++..   +...+.||+|.+
T Consensus        77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            999999999999999866   345788999975

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.89  E-value=6.8e-22  Score=115.62  Aligned_cols=105  Identities=32%  Similarity=0.548  Sum_probs=90.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS   90 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~   90 (128)
                      +|+|+|++|++|...+..+.+|||+.+.+   +....+|+++..+.+|.|+|+|.|. +...  ....|.|+|||++..+
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~~~v~d~~~~~   74 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFE-LMEG--ADSPLSVEVWDWDLVS   74 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEE---CCEEEeceeecCCCCCccCcEEEEE-cCCC--CCCEEEEEEEECCCCC
Confidence            58999999999998887788999999998   3456789999999999999999998 5432  2467999999999999


Q ss_pred             CCceeEEEEEecccccccccccceEeccccc
Q psy12095         91 KHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      .+++||++.++|.++..+.....|++|.+..
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~  105 (123)
T cd04025          75 KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDP  105 (123)
T ss_pred             CCcEeEEEEEEHHHcccCCCCCCEEECCCCC
Confidence            9999999999999997777778999998754

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.89  E-value=4.2e-22  Score=116.17  Aligned_cols=105  Identities=32%  Similarity=0.514  Sum_probs=91.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS   90 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~   90 (128)
                      +|+|+|.+|++|+..+..+.+|||+++.+.  +....+|+++..+.+|.|+|.|.|. +..  . ...+.++|||++..+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~-v~~--~-~~~l~~~v~D~d~~~   74 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLP-IED--V-TQPLYIKVFDYDRGL   74 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEE-ecC--C-CCeEEEEEEeCCCCC
Confidence            489999999999988888899999999983  3356789999999999999999998 542  2 357999999999998


Q ss_pred             CCceeEEEEEecccccccccccceEeccccc
Q psy12095         91 KHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      ++++||++.+++..+..+...+.|++|.+..
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~  105 (121)
T cd04042          75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN  105 (121)
T ss_pred             CCcceEEEEEEHHHcCCCCCeEEEEECCCCC
Confidence            9999999999999998888889999998665

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.89  E-value=1.5e-21  Score=115.36  Aligned_cols=117  Identities=37%  Similarity=0.627  Sum_probs=96.4

Q ss_pred             eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      ++.|+.  +.|+|+|++|++|+..+..+..|||+++.+.+.+  ....+|+++.++.+|.|+++|.|. +...+ ....+
T Consensus         7 ~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~-~~~~l   82 (131)
T cd04026           7 KISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD-KDRRL   82 (131)
T ss_pred             EEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh-cCCEE
Confidence            455555  9999999999999987777889999999986533  346789999999999999999998 55432 23579


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      .+.||+++..+.+++||++.++|.++... ....||+|.+....
T Consensus        83 ~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~  125 (131)
T cd04026          83 SIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEG  125 (131)
T ss_pred             EEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccc
Confidence            99999999888999999999999998654 67889999876543

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>KOG1028|consensus

Probab=99.88  E-value=6.2e-22  Score=135.76  Aligned_cols=119  Identities=63%  Similarity=1.033  Sum_probs=110.7

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|+.....|.|+|.+|++|+..+..+.+|||+++++.|+...+.+|++.+++++|.|+|+|.|. ++..++....+.
T Consensus       158 fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~  236 (421)
T KOG1028|consen  158 FSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLH  236 (421)
T ss_pred             EEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-cCHHHhccCEEE
Confidence            5899999999999999999999998866789999999999998888999999999999999999999 888888889999


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      +.||+.+.+++++++|.+.++|...........|.+|.+.
T Consensus       237 l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~  276 (421)
T KOG1028|consen  237 LSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS  276 (421)
T ss_pred             EEEEecCCcccccEEEEEEecCccccccccceeeeccccc
Confidence            9999999999999999999999988777667789999886

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.88  E-value=1.7e-21  Score=115.31  Aligned_cols=107  Identities=37%  Similarity=0.573  Sum_probs=91.5

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC----CCeeecceeecCCCCeecceEEEcccCCCC--C
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKGVPYAD--A   74 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~----~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~--~   74 (128)
                      ++++|.+..+.|+|+|++|++|+..+..+.+|||+++.+.+..    ....+|+++.++.+|.|+|+|.|. +...+  .
T Consensus         7 ~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~~~~   85 (133)
T cd04009           7 VKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-VPPEQCSV   85 (133)
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-echhhccc
Confidence            4789999999999999999999988777889999999987543    346789999999999999999998 65422  2


Q ss_pred             CCCeEEEEEEEccCCCCCceeEEEEEeccccccc
Q psy12095         75 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  108 (128)
Q Consensus        75 ~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~  108 (128)
                      ....|.+.|||++..+++++||++.++|+++...
T Consensus        86 ~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          86 EGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             CCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            3467999999999999999999999999988543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.88  E-value=6.7e-22  Score=113.67  Aligned_cols=105  Identities=34%  Similarity=0.582  Sum_probs=88.2

Q ss_pred             CEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCC-CCCeEEEEEEEcc
Q psy12095         10 NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADA-MNKTLVFAIFDFD   87 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~~~~   87 (128)
                      |.|+|+|.+|++|+..+.. +.+|||+++.+.+.+....+|+++.++.+|.|+|.|.|. +...+. ....|.++|||++
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCC
Confidence            5799999999999988876 889999999986555556789999999999999999997 444322 2357999999999


Q ss_pred             CCCCCceeEEEEEecccccccccccceEecc
Q psy12095         88 RFSKHDQIGEVKVALCQIDLAQTIEEWRELQ  118 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~  118 (128)
                      .++++++||++.+++.++.   ....|+.+.
T Consensus        80 ~~~~dd~lG~~~i~l~~l~---~~~~~~~~~  107 (111)
T cd04041          80 RFTADDRLGRVEIDLKELI---EDRNWMGRR  107 (111)
T ss_pred             CCCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence            9999999999999999985   345788764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>KOG0696|consensus

Probab=99.88  E-value=4.9e-23  Score=138.38  Aligned_cols=117  Identities=38%  Similarity=0.671  Sum_probs=102.4

Q ss_pred             EEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         3 ~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |+...+...|+|.|.+|+||.+++.++.+|||+++.+.|+..  .+++|++++.+++|.|||+|.|. +.+.+. +..|.
T Consensus       173 l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~-Lkp~Dk-drRls  250 (683)
T KOG0696|consen  173 LEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFK-LKPSDK-DRRLS  250 (683)
T ss_pred             EEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEe-cccccc-cceeE
Confidence            566778999999999999999999999999999999987654  36789999999999999999999 666653 57899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |+|||++..++++|+|...+.++++.. ...++||.|+....
T Consensus       251 iEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsqeE  291 (683)
T KOG0696|consen  251 IEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQEE  291 (683)
T ss_pred             EEEecccccccccccceecccHHHHhh-cchhhHHHHhhhhc
Confidence            999999999999999999999999844 46789999877543

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.88  E-value=4.1e-21  Score=111.87  Aligned_cols=104  Identities=30%  Similarity=0.488  Sum_probs=88.7

Q ss_pred             EEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095         12 LSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS   90 (128)
Q Consensus        12 l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~   90 (128)
                      |+|+|.+|++|++.+ ..+.+||||.+.+.  +....+|+++..+.+|.|+|+|.|. ++..   ...+.+.||+++.++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~   75 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLR   75 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCC
Confidence            679999999999863 35688999999982  3345789999999999999999999 6632   358999999999999


Q ss_pred             CCceeEEEEEecccccccccccceEeccccc
Q psy12095         91 KHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      +++++|.+.++++++..+...+.|++|.+..
T Consensus        76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  106 (121)
T cd08401          76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD  106 (121)
T ss_pred             CCceEEEEEEEHHHccCCCCcEeeEEEEccC
Confidence            9999999999999998777788999998753

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.87  E-value=3.5e-21  Score=109.68  Aligned_cols=101  Identities=26%  Similarity=0.352  Sum_probs=85.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      |.|+|.+|++|+..+..+.+|||+.+.+.   .+..+|+++..+.+|.|+|.|.|. +...  ....+.|.||+++.   
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~-v~~~--~~~~l~v~v~d~~~---   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFL-VRNP--ENQELEIEVKDDKT---   72 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEE-eCCC--CCCEEEEEEEECCC---
Confidence            78999999999988878899999999993   367889999999999999999999 6542  23579999999886   


Q ss_pred             CceeEEEEEecccccccc--cccceEeccccc
Q psy12095         92 HDQIGEVKVALCQIDLAQ--TIEEWRELQSVE  121 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~~~~--~~~~w~~L~~~~  121 (128)
                      +++||++.++|.++....  ..+.||+|.+++
T Consensus        73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence            789999999999886543  567999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.87  E-value=6.9e-21  Score=112.03  Aligned_cols=106  Identities=34%  Similarity=0.524  Sum_probs=89.7

Q ss_pred             CEEEEEEEEecCCCCCCC--CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095         10 NSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      |.|+|+|.+|++|+..+.  .+.+|||+.+.+   +....+|+++..+.+|.|++.|.|. +..  .....|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~---~~~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~   74 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKD   74 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE---CCEEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEECC
Confidence            579999999999998887  788999999988   3456789999999999999999998 543  23468999999999


Q ss_pred             CCCCCceeEEEEEecccccc---cccccceEeccccc
Q psy12095         88 RFSKHDQIGEVKVALCQIDL---AQTIEEWRELQSVE  121 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~---~~~~~~w~~L~~~~  121 (128)
                      ..+++++||++.+++.++..   ......||+|.+..
T Consensus        75 ~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~  111 (128)
T cd04024          75 RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR  111 (128)
T ss_pred             CCCCCCcceEEEEEHHHhhcccccCccceeEEccCcc
Confidence            98889999999999999863   33457899998773

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=4.9e-21  Score=115.18  Aligned_cols=105  Identities=25%  Similarity=0.367  Sum_probs=87.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeec-CCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~-~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      .|+|+|.+|++|++.+..+.+|||+++.+.   .+..+|++... +.+|.|||.|.|. +..  .....+.+.||+++..
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~-v~~--~~~~~l~v~V~d~~~~   74 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFV-AAE--PFEDHLILSVEDRVGP   74 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEE-ecC--ccCCeEEEEEEEecCC
Confidence            378999999999999888999999999993   46778888765 6999999999998 543  2235799999999988


Q ss_pred             CCCceeEEEEEeccccccc----ccccceEeccccc
Q psy12095         90 SKHDQIGEVKVALCQIDLA----QTIEEWRELQSVE  121 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~----~~~~~w~~L~~~~  121 (128)
                      +++++||++.++|.++..+    ...++||+|.+..
T Consensus        75 ~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~  110 (150)
T cd04019          75 NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPG  110 (150)
T ss_pred             CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence            8899999999999998543    3457999998765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.87  E-value=8.4e-21  Score=112.72  Aligned_cols=108  Identities=34%  Similarity=0.504  Sum_probs=91.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCC-CCCeeecceeecCCCCeecceEEEcccCCC-------------CCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPD-KKKKFETKVHRKTLNPVFNETFVFKGVPYA-------------DAMNK   77 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~-------------~~~~~   77 (128)
                      |+|+|++|++|+.. ..+..|||+++.+... .....+|+++..+.+|.|+|.|.|. +...             ++...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEE-cccccccccccccccccccccc
Confidence            57899999999988 6788999999998632 2456889999999999999999998 5432             22456


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      .+.|+|||.+..+++++||++.+++.++........|++|.+..
T Consensus        79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            89999999999889999999999999987777788999998876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=4.4e-21  Score=111.75  Aligned_cols=100  Identities=32%  Similarity=0.444  Sum_probs=83.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS   90 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~   90 (128)
                      .|+|+|++|++|+..    .+|||+.+.+.   ....+|+++.++.+|.|+|+|.|. +.  ......+.+.|||++.. 
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~d~d~~-   69 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVWDKDKA-   69 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEEeCCCC-
Confidence            378999999999877    68999999983   356789999999999999999998 43  22446899999999977 


Q ss_pred             CCceeEEEEEecccccccc-----cccceEeccccc
Q psy12095         91 KHDQIGEVKVALCQIDLAQ-----TIEEWRELQSVE  121 (128)
Q Consensus        91 ~~~~lG~~~~~l~~l~~~~-----~~~~w~~L~~~~  121 (128)
                      ++++||++.++|+++....     ...+||+|.+.+
T Consensus        70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~  105 (121)
T cd08378          70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK  105 (121)
T ss_pred             cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence            7889999999999985432     346899998876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.87  E-value=7.1e-21  Score=111.71  Aligned_cols=103  Identities=24%  Similarity=0.421  Sum_probs=88.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      |.|+|++|++|+.  ..+.+|||+.+.+. ......+|+++.++.+|.|+|.|.|. +...   ...+.|.|||++..++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~   73 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKKSD   73 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCCCC
Confidence            5789999999987  56889999999983 22346789999999999999999998 6432   3579999999999989


Q ss_pred             CceeEEEEEecccccccccccceEeccccc
Q psy12095         92 HDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      +++||++.+++.++..+....+|++|.+..
T Consensus        74 ~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~  103 (126)
T cd08678          74 SKFLGLAIVPFDELRKNPSGRQIFPLQGRP  103 (126)
T ss_pred             CceEEEEEEeHHHhccCCceeEEEEecCCC
Confidence            999999999999998887788999998763

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.86  E-value=9.2e-21  Score=113.91  Aligned_cols=105  Identities=37%  Similarity=0.551  Sum_probs=88.2

Q ss_pred             EecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--------------------------CeeecceeecCCCC
Q psy12095          5 YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--------------------------KKFETKVHRKTLNP   58 (128)
Q Consensus         5 y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--------------------------~~~~t~~~~~~~~p   58 (128)
                      +.|+.+.|.|+|++|++|.+.+..+.+|||+++.+.+...                          ...+|.++..+.+|
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            5678899999999999999998889999999999854321                          23678889999999


Q ss_pred             eecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEec
Q psy12095         59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL  117 (128)
Q Consensus        59 ~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L  117 (128)
                      .|+|+|.|. +..  .....|.|+|||++    +++||++.++++++. +...++||+|
T Consensus       103 ~WnE~F~f~-v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L  153 (153)
T cd08676         103 VWNETFRFE-VED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL  153 (153)
T ss_pred             ccccEEEEE-ecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence            999999998 542  23468999999987    789999999999987 4457899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.86  E-value=1.6e-20  Score=111.42  Aligned_cols=116  Identities=29%  Similarity=0.462  Sum_probs=90.4

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCC----CC--CCCeEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYA----DA--MNKTLVFAI   83 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~----~~--~~~~l~v~v   83 (128)
                      .+|+|.|.+|++|++.+..+.+|||+++.+.   ....+|+++.++.+|.|+|.|.|......    +.  ....+.++|
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V   77 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL   77 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence            4789999999999998888899999999983   45778999999999999999998722211    11  124689999


Q ss_pred             EEccCCCCCceeEEEEE-eccccc---ccccccceEecccccCCCCcCC
Q psy12095         84 FDFDRFSKHDQIGEVKV-ALCQID---LAQTIEEWRELQSVEGEGGQLL  128 (128)
Q Consensus        84 ~~~~~~~~~~~lG~~~~-~l~~l~---~~~~~~~w~~L~~~~~~~~~~~  128 (128)
                      ||++..++|++||++.+ ++..+.   .+....+|++|.......|+|+
T Consensus        78 ~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil  126 (135)
T cd04017          78 FDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELL  126 (135)
T ss_pred             EeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhhee
Confidence            99999999999999986 333332   2355679999987766666654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.86  E-value=3.5e-20  Score=108.77  Aligned_cols=109  Identities=27%  Similarity=0.405  Sum_probs=89.6

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      ..++|+|.+|++|+..+..+.+|||+.+.+........+|+++.++.+|.|+|+|.|. +...  ....|.|+||+++..
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~~   77 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSFV   77 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCCC
Confidence            3689999999999988888899999999874433446789999999999999999998 5543  246799999999998


Q ss_pred             CCCceeEEEEEecccccc---cccccceEeccccc
Q psy12095         90 SKHDQIGEVKVALCQIDL---AQTIEEWRELQSVE  121 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~---~~~~~~w~~L~~~~  121 (128)
                      +++++||++.++|..+..   +.....|++|.+.+
T Consensus        78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~g  112 (126)
T cd04043          78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQG  112 (126)
T ss_pred             CCCceEEEEEEecCHHHcCCCCCCceEEEEcCCCC
Confidence            889999999999987543   34566899998754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.86  E-value=2.3e-20  Score=109.29  Aligned_cols=108  Identities=31%  Similarity=0.425  Sum_probs=91.1

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCCC-CCCeEEEEEEEcc
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADA-MNKTLVFAIFDFD   87 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~~~~   87 (128)
                      |.|.|+|.+|++|+..+..+..|||+++.+.   ....+|++.. .+.+|.|++.|.|. +..... ....|.|+|||++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~   76 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKD   76 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECc
Confidence            5799999999999988877889999999983   3456777776 48999999999998 654321 2357999999999


Q ss_pred             CCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         88 RFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      .+.++++||.+.+++.++..+...+.|+.|.+.+
T Consensus        77 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~  110 (124)
T cd04049          77 NFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK  110 (124)
T ss_pred             cCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence            9889999999999999998888889999998865

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.86  E-value=2.6e-20  Score=108.58  Aligned_cols=104  Identities=36%  Similarity=0.539  Sum_probs=88.2

Q ss_pred             CEEEEEEEEecCCCCCCC------CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALDM------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI   83 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~------~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v   83 (128)
                      |.|+|+|.+|++|+..+.      .+.+|||+.+.+.   ....+|+++.++.+|.|+|.|.|. +...  ....+.+.|
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v   74 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIEL   74 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEE
Confidence            568999999999997764      3578999999983   367889999999999999999988 5432  346899999


Q ss_pred             EEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         84 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      ||++.. ++++||.+.+++.++..+...+.|++|.+.
T Consensus        75 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  110 (121)
T cd08391          75 FDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV  110 (121)
T ss_pred             EecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC
Confidence            999988 889999999999998877777899999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.86  E-value=4.6e-20  Score=108.20  Aligned_cols=103  Identities=32%  Similarity=0.493  Sum_probs=85.0

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      ..|+|+|++|++|++.+   .+||||.+.+.  +.+..+|++. .+.+|.|||.|.|. +...+.  ..+.|.+||++..
T Consensus         4 ~~L~V~Vi~A~~L~~~~---~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~~~   74 (126)
T cd08400           4 RSLQLNVLEAHKLPVKH---VPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKAKR   74 (126)
T ss_pred             eEEEEEEEEeeCCCCCC---CCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECCCC
Confidence            36999999999998753   68999999993  3344677764 57899999999998 443322  4688999999999


Q ss_pred             CCCceeEEEEEecccccccccccceEeccccc
Q psy12095         90 SKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      +++++||.+.++|+.+..+...+.|++|.+..
T Consensus        75 ~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~  106 (126)
T cd08400          75 SKDSEIAEVTVQLSKLQNGQETDEWYPLSSAS  106 (126)
T ss_pred             CCCCeEEEEEEEHhHccCCCcccEeEEcccCC
Confidence            99999999999999998888889999998864

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.86  E-value=1.6e-20  Score=111.33  Aligned_cols=95  Identities=31%  Similarity=0.478  Sum_probs=82.8

Q ss_pred             cCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEc
Q psy12095          7 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF   86 (128)
Q Consensus         7 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~   86 (128)
                      ...|.|+|+|.+|++|...+..+.+|||+++.+   +....+|+++.++.+|.|+++|.|. +..  .....+.++|||+
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~---~~~~~kT~vi~~t~nP~Wne~f~f~-v~~--~~~~~l~i~V~D~   85 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM---GSQEHKTKVVSDTLNPKWNSSMQFF-VKD--LEQDVLCITVFDR   85 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE---CCEeeeccccCCCCCCccCceEEEE-ecC--ccCCEEEEEEEEC
Confidence            456799999999999998888889999999998   4557889999999999999999998 542  2346799999999


Q ss_pred             cCCCCCceeEEEEEecccccc
Q psy12095         87 DRFSKHDQIGEVKVALCQIDL  107 (128)
Q Consensus        87 ~~~~~~~~lG~~~~~l~~l~~  107 (128)
                      +..++|++||++.+++.++..
T Consensus        86 d~~~~d~~lG~~~i~l~~l~~  106 (136)
T cd08375          86 DFFSPDDFLGRTEIRVADILK  106 (136)
T ss_pred             CCCCCCCeeEEEEEEHHHhcc
Confidence            999999999999999998864

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>KOG1030|consensus

Probab=99.86  E-value=4.2e-21  Score=114.37  Aligned_cols=97  Identities=36%  Similarity=0.540  Sum_probs=85.4

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      -|.|+|.|.+|.+|..++..+++|||+.+.+   +.++.+|+++..+.||.||+.|.|. +...   ...+.+.|||++.
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l---g~q~lkT~~v~~n~NPeWNe~ltf~-v~d~---~~~lkv~VyD~D~   77 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL---GNQKLKTRVVYKNLNPEWNEELTFT-VKDP---NTPLKVTVYDKDT   77 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEE---CCeeeeeeeecCCCCCcccceEEEE-ecCC---CceEEEEEEeCCC
Confidence            4789999999999999997799999999999   6778889999999999999999998 6533   3689999999999


Q ss_pred             CCCCceeEEEEEeccccccccccc
Q psy12095         89 FSKHDQIGEVKVALCQIDLAQTIE  112 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~~~~~~~  112 (128)
                      ++.|+++|.++|+|..+.......
T Consensus        78 fs~dD~mG~A~I~l~p~~~~~~~~  101 (168)
T KOG1030|consen   78 FSSDDFMGEATIPLKPLLEAQKMD  101 (168)
T ss_pred             CCcccccceeeeccHHHHHHhhhh
Confidence            999999999999998886654433

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.85  E-value=2.3e-20  Score=108.06  Aligned_cols=99  Identities=24%  Similarity=0.327  Sum_probs=80.8

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      +.|.|+|.+|++|...+   ..+||+.+.+   +.++.+|++.+. .+|.|||.|.|. +.  +. ...|.|+|||++.+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~---g~~k~kT~v~~~-~nP~WnE~F~F~-~~--~~-~~~L~v~V~dkd~~   70 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV---QNVKSTTIAVRG-SQPCWEQDFMFE-IN--RL-DLGLVIELWNKGLI   70 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEE---CCEEeEeeECCC-CCCceeeEEEEE-Ec--CC-CCEEEEEEEeCCCc
Confidence            47899999999997654   4589999999   446777888877 499999999998 53  22 34599999999865


Q ss_pred             CCCceeEEEEEecccccccccc--cceEecccc
Q psy12095         90 SKHDQIGEVKVALCQIDLAQTI--EEWRELQSV  120 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~~~~--~~w~~L~~~  120 (128)
                       .|+++|++.|+|.++..+...  .+||+|.+.
T Consensus        71 -~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~  102 (127)
T cd08394          71 -WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE  102 (127)
T ss_pred             -CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence             899999999999998765444  689999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.85  E-value=3.2e-20  Score=108.18  Aligned_cols=104  Identities=32%  Similarity=0.551  Sum_probs=87.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      |.|+|++|++|.+.+..+.+|||+.+.+.  +....+|+++..+.+|.|+|.|.|. +...   ...+.+.+|+++.+++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~~~   75 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTLSR   75 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCCCC
Confidence            78999999999998888899999999983  3335689999999999999999998 5432   2579999999999999


Q ss_pred             CceeEEEEEeccccccc-ccccceEeccccc
Q psy12095         92 HDQIGEVKVALCQIDLA-QTIEEWRELQSVE  121 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~~~-~~~~~w~~L~~~~  121 (128)
                      ++++|++.++++.+..+ ...+.|++|.+..
T Consensus        76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~  106 (121)
T cd04054          76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVD  106 (121)
T ss_pred             CCEEEEEEEcHHHhccCCCCCCcEEECeeeC
Confidence            99999999998887643 3467899998753

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.85  E-value=1.7e-20  Score=107.84  Aligned_cols=105  Identities=27%  Similarity=0.397  Sum_probs=86.1

Q ss_pred             cCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCC--CCCCCCeEEEEEE
Q psy12095          7 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY--ADAMNKTLVFAIF   84 (128)
Q Consensus         7 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~--~~~~~~~l~v~v~   84 (128)
                      +....|+|+|.+|++|.    .+.+|||+++.+.   .++.+|+++..+.+|.|+|+|.|. +..  .++....|.+.||
T Consensus         1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~l~~~~l~i~V~   72 (111)
T cd04011           1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFN-FHESPDELFDKIIKISVY   72 (111)
T ss_pred             CCcEEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEe-cCCCHHHHhcCeEEEEEE
Confidence            34678999999999998    4578999999994   356689999999999999999998 432  2233467999999


Q ss_pred             EccCCCCCceeEEEEEeccccccccc---ccceEeccc
Q psy12095         85 DFDRFSKHDQIGEVKVALCQIDLAQT---IEEWRELQS  119 (128)
Q Consensus        85 ~~~~~~~~~~lG~~~~~l~~l~~~~~---~~~w~~L~~  119 (128)
                      |++.++++++||.+.++|..+..+..   ...|++|.+
T Consensus        73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          73 DSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            99998889999999999999866533   467999975

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.85  E-value=2.6e-20  Score=106.39  Aligned_cols=96  Identities=29%  Similarity=0.435  Sum_probs=80.3

Q ss_pred             CEEEEEEEEecCCCCCCCC----CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALDMG----GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD   85 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~----~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~   85 (128)
                      |.|.|+|.+|++|++.+..    ..+|||+.+.+   +.+.++|++++.+.+|.|+|.|.|. +...+ ....|.+.|||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~---~~~~~kT~v~~~t~nPvWne~f~f~-v~~~~-~~~~L~~~V~D   75 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF---GRRVFRTSWRRHTLNPVFNERLAFE-VYPHE-KNFDIQFKVLD   75 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE---CCEeEeeeeecCCCCCcccceEEEE-EeCcc-CCCEEEEEEEE
Confidence            5799999999999986532    34799999998   4567789999999999999999998 65433 23579999999


Q ss_pred             ccCCCCCceeEEEEEeccccccccc
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDLAQT  110 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~~~~  110 (128)
                      ++..++|++||++.++|..+..+..
T Consensus        76 ~d~~~~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          76 KDKFSFNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             CCCCCCCcceEEEEEEHHHHHhhCC
Confidence            9999999999999999999866543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.85  E-value=4.4e-20  Score=107.38  Aligned_cols=107  Identities=25%  Similarity=0.373  Sum_probs=90.6

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      |.|+|+|.+|++|+..+..+.+|||+++.+.  +....+|.++..+.+|.|+|.|.|. +...   ...|.|+||+++..
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~~~   74 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYEKV   74 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECCCC
Confidence            5789999999999998878899999999983  2345778888899999999999887 5432   25799999999999


Q ss_pred             CCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         90 SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      +++++||++.+++.++..+ ..+.||.|.+.++.
T Consensus        75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~  107 (120)
T cd04045          75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEE  107 (120)
T ss_pred             CCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcc
Confidence            9999999999999998665 67899999887643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.85  E-value=5.9e-20  Score=106.21  Aligned_cols=108  Identities=41%  Similarity=0.629  Sum_probs=92.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      |+|+|++|++|+..+..+.+|||+++.+.  +....+|+++.++.+|.|+++|.|. +...  ....+.+++|+++..++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRGGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCCCC
Confidence            57899999999988777889999999983  3345789999999999999999998 5432  34679999999999889


Q ss_pred             CceeEEEEEecccccccccccceEecccccCCC
Q psy12095         92 HDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  124 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~  124 (128)
                      +++||++.+++.++..+.....|++|.+.++..
T Consensus        76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~  108 (115)
T cd04040          76 DDLLGSAYIDLSDLEPEETTELTLPLDGQGGGK  108 (115)
T ss_pred             CCceEEEEEEHHHcCCCCcEEEEEECcCCCCcc
Confidence            999999999999998887788999998876554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.85  E-value=8e-20  Score=110.87  Aligned_cols=105  Identities=28%  Similarity=0.418  Sum_probs=87.1

Q ss_pred             CCEEEEEEEEecCCCCCC------------------------------CCCCCCCeEEEEEeCCCCCeeecceeecCCCC
Q psy12095          9 ANSLSVTVIQAEDLPALD------------------------------MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP   58 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~------------------------------~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p   58 (128)
                      .|.|.|+|.+|++|+.++                              ..+.+|||+.+.+.  +.+..+|+++.++.+|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence            478999999999999875                              24567999999983  2345689999999999


Q ss_pred             eecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         59 VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        59 ~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      .|||+|.|. +...   ...|.+.|||++.++ +++||.+.++++++..+...++|++|.+.
T Consensus        84 ~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~  140 (158)
T cd04015          84 VWNESFHIY-CAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS  140 (158)
T ss_pred             ccceEEEEE-ccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence            999999998 5422   257999999998875 57999999999999888888999999764

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.85  E-value=8.5e-20  Score=106.69  Aligned_cols=105  Identities=24%  Similarity=0.363  Sum_probs=87.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS   90 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~   90 (128)
                      .|+|+|.+|++|...+..+.+|||+++.+.  +....+|+++..+.+|.|+|.|.|. +..    ...|.++|||++..+
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~~   73 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKFK   73 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCCC
Confidence            378999999999988888899999999983  3567789999999999999999998 643    468999999999876


Q ss_pred             C--CceeEEEEEecccccccc-cccceEecccccC
Q psy12095         91 K--HDQIGEVKVALCQIDLAQ-TIEEWRELQSVEG  122 (128)
Q Consensus        91 ~--~~~lG~~~~~l~~l~~~~-~~~~w~~L~~~~~  122 (128)
                      .  +++||++.+++.++.... ....|++|.+...
T Consensus        74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~  108 (123)
T cd08382          74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK  108 (123)
T ss_pred             CCCCceEeEEEEEHHHccccCCCccceeEeecCCC
Confidence            5  579999999999985443 3467999966553

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=1.2e-19  Score=105.47  Aligned_cols=103  Identities=32%  Similarity=0.545  Sum_probs=87.3

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      |.|+|+|.+|++|+..+..+.+|||+.+.+.   ....+|+++.++.+|.|+++|.|. +..  . ...+.++|||++..
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~~~   73 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDEDKD   73 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECCCC
Confidence            5799999999999988878889999999983   345689999999999999999998 542  1 35799999999988


Q ss_pred             CCCceeEEEEEecccccccccccceEeccccc
Q psy12095         90 SKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      ++++++|++.+++.++..+  ...|+.|.+..
T Consensus        74 ~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~~  103 (119)
T cd08377          74 KKPEFLGKVAIPLLSIKNG--ERKWYALKDKK  103 (119)
T ss_pred             CCCceeeEEEEEHHHCCCC--CceEEECcccC
Confidence            8899999999999988654  36899997654

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.84  E-value=7e-20  Score=109.97  Aligned_cols=109  Identities=29%  Similarity=0.451  Sum_probs=87.4

Q ss_pred             EEEEEEEEecCCCCCCCC--------------CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCC
Q psy12095         11 SLSVTVIQAEDLPALDMG--------------GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMN   76 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~--------------~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~   76 (128)
                      .|.|+|.+|++|+.++..              +.+|||+++.+.   ....+|+++.++.+|.|||+|.|. +..... .
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~-~   75 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFP-EMFPPL-C   75 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEE-eeCCCc-C
Confidence            378999999999987643              368999999983   345689999999999999999998 433322 3


Q ss_pred             CeEEEEEEEccCCCCCceeEEEEEeccccccccc-------ccceEecccccCCC
Q psy12095         77 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-------IEEWRELQSVEGEG  124 (128)
Q Consensus        77 ~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~-------~~~w~~L~~~~~~~  124 (128)
                      ..|.++|||++..++|+++|.+.+++.++.....       ...|+.|.+.+...
T Consensus        76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~  130 (151)
T cd04018          76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY  130 (151)
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence            5799999999999999999999999998755432       35899998776543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.84  E-value=9.2e-20  Score=107.93  Aligned_cols=106  Identities=35%  Similarity=0.520  Sum_probs=87.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC----CCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEc
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF   86 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~----~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~   86 (128)
                      .|+|+|++|++|+..+..+.+|||+++.+.+..    ....+|+++.++.+|.|+++|.|. +...   ...+.+.|||+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~   76 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDE   76 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEEC
Confidence            378999999999988878889999999986431    124678889999999999999998 6532   35789999999


Q ss_pred             cCCCCCceeEEEEEeccccccccc------ccceEecccc
Q psy12095         87 DRFSKHDQIGEVKVALCQIDLAQT------IEEWRELQSV  120 (128)
Q Consensus        87 ~~~~~~~~lG~~~~~l~~l~~~~~------~~~w~~L~~~  120 (128)
                      +..+++++||++.+++.++..+..      ...||.|.+.
T Consensus        77 ~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~  116 (133)
T cd04033          77 NRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR  116 (133)
T ss_pred             CCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence            999999999999999999865432      3589999865

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.84  E-value=1.7e-19  Score=108.36  Aligned_cols=111  Identities=22%  Similarity=0.314  Sum_probs=87.9

Q ss_pred             EEEEEEEEecC--CCCCCCCCCCCCeEEEEE-eC-CCCCeeecceeecCCCCeecceEEEcccCCC------CCCCCeEE
Q psy12095         11 SLSVTVIQAED--LPALDMGGTSDPYVKVYL-LP-DKKKKFETKVHRKTLNPVFNETFVFKGVPYA------DAMNKTLV   80 (128)
Q Consensus        11 ~l~v~i~~a~~--l~~~~~~~~~~p~~~~~~-~~-~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~------~~~~~~l~   80 (128)
                      ...++|..|.+  ++....++.+|||+++.+ .+ .+.++.+|++++.+.+|.|||+|.|. +...      ......|.
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~   81 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLK   81 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEE
Confidence            34566666666  566666778999999987 34 34458899999999999999999998 7544      23356799


Q ss_pred             EEEEEccCC-CCCceeEEEEEecccccccccccceEecccccC
Q psy12095         81 FAIFDFDRF-SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        81 v~v~~~~~~-~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      ++|||++.+ ++|++||++.++|+.+........|++|....+
T Consensus        82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k  124 (155)
T cd08690          82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRK  124 (155)
T ss_pred             EEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCC
Confidence            999999886 579999999999999977767778999875443

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.84  E-value=1.4e-19  Score=107.07  Aligned_cols=106  Identities=22%  Similarity=0.365  Sum_probs=87.9

Q ss_pred             CCEEEEEEEEecCCCCCCCC----------CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          9 ANSLSVTVIQAEDLPALDMG----------GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~----------~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      .+.|+|+|.+|++|...+..          +.+|||+.+.+.  +.+..+|++...+.+|.|||+|.|. +.    ....
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~~~   75 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTE-VH----NGRN   75 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEE-cC----CCCE
Confidence            36799999999999877642          578999999983  2334678888889999999999998 65    2367


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccc--cccccceEeccccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDL--AQTIEEWRELQSVE  121 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~--~~~~~~w~~L~~~~  121 (128)
                      +.|.||+++..+.++++|++.++|.++..  +...+.|++|.+.+
T Consensus        76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G  120 (132)
T cd04014          76 LELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQG  120 (132)
T ss_pred             EEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCCc
Confidence            99999999988889999999999999876  56678999998653

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.83  E-value=2e-19  Score=105.44  Aligned_cols=110  Identities=27%  Similarity=0.324  Sum_probs=89.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCC--CCCCeEEEEEEEcc
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYAD--AMNKTLVFAIFDFD   87 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~--~~~~~l~v~v~~~~   87 (128)
                      .|+|+|.+|++|+..+..+..|||+.+.+..  ....+|++.. .+.+|.|+|.|.|. +....  .....|.++||+++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~   77 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCER   77 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECC
Confidence            3789999999999888788999999999843  2456788865 58999999999998 65442  12467999999999


Q ss_pred             CCCCCceeEEEEEecccccccccc-----cceEecccccCC
Q psy12095         88 RFSKHDQIGEVKVALCQIDLAQTI-----EEWRELQSVEGE  123 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~~~~-----~~w~~L~~~~~~  123 (128)
                      ..+.+++||.+.++|.++..+...     ..||.|....+.
T Consensus        78 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~  118 (125)
T cd04051          78 PSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK  118 (125)
T ss_pred             CCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence            988899999999999998766543     589999875543

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=6e-19  Score=103.66  Aligned_cols=104  Identities=32%  Similarity=0.491  Sum_probs=85.3

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      ..|+|+|++|++|+..+..+.+|||+.+.+.   ....+|+++.++.+|.|+|.|.|. +...   ...+.++|||++..
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~~   73 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDDD   73 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCCC
Confidence            3689999999999988878889999999983   346789999999999999999997 4322   25799999998852


Q ss_pred             -----------CCCceeEEEEEecccccccccccceEecccccC
Q psy12095         90 -----------SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        90 -----------~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                                 +.+++||.+.+++..+.  .....|+.|.+.+.
T Consensus        74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~  115 (127)
T cd04027          74 IKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTD  115 (127)
T ss_pred             cccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCC
Confidence                       46889999999998874  34578999987653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>KOG1028|consensus

Probab=99.82  E-value=6.7e-20  Score=125.84  Aligned_cols=118  Identities=41%  Similarity=0.656  Sum_probs=102.9

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+++|.|.+++|+|.|.+|++|..++..+..||||++.+...+.  .+.+|.+.+.+.+|.|||+|.|. ++.+.+....
T Consensus       289 ~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp~~~l~~~~  367 (421)
T KOG1028|consen  289 LSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VPPEQLAEVS  367 (421)
T ss_pred             EEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CCHHHhheeE
Confidence            58999999999999999999999999899999999999976663  36788899999999999999997 9988888888


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      +.|+||+++.++.+++||++.+....  .+....+|.++...+
T Consensus       368 l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p  408 (421)
T KOG1028|consen  368 LELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSP  408 (421)
T ss_pred             EEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCc
Confidence            99999999999999999998877654  455577888876554

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.81  E-value=6.4e-19  Score=103.07  Aligned_cols=113  Identities=31%  Similarity=0.437  Sum_probs=89.6

Q ss_pred             CEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095         10 NSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      |.|+|+|.+|++|+..+ ..+.+|||+.+.+... ....+|+++.++.+|.|+|.|.|. +..   ....|.++|||++.
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~-v~~---~~~~l~~~v~d~~~   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYIL-VNS---LTEPLNLTVYDFND   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEE-eCC---CCCEEEEEEEecCC
Confidence            67999999999998654 3456899999998532 356789999999999999999998 652   24689999999999


Q ss_pred             CCCCceeEEEEEecccccccccccc-eEecccccCCCCcC
Q psy12095         89 FSKHDQIGEVKVALCQIDLAQTIEE-WRELQSVEGEGGQL  127 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~~~~~~~~-w~~L~~~~~~~~~~  127 (128)
                      .+++++||.+.++|.++..+..... |..+...++..|+|
T Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i  116 (124)
T cd04044          77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGEL  116 (124)
T ss_pred             CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEE
Confidence            8899999999999999977766654 55555554444443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.81  E-value=8.6e-19  Score=102.55  Aligned_cols=105  Identities=29%  Similarity=0.389  Sum_probs=81.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS   90 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~   90 (128)
                      .++|.|++|++|...+..+.+|||+++.+... ....+|.++.++.+|.|+|+|.|. +...  ....+.++|||++..+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L~~~V~d~d~~~   76 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELE-ATLP--GNSILKISVMDYDLLG   76 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEE-ecCC--CCCEEEEEEEECCCCC
Confidence            37899999999999888889999999998422 123567788899999999999997 4322  2467999999999999


Q ss_pred             CCceeEEEEEecccccccccccceEecccc
Q psy12095         91 KHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        91 ~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      ++++||++.+++++... .++.+|..+.+.
T Consensus        77 ~dd~iG~~~i~l~~~~~-~~~~~~~~~~~~  105 (124)
T cd04037          77 SDDLIGETVIDLEDRFF-SKHRATCGLPPT  105 (124)
T ss_pred             CCceeEEEEEeeccccc-chHHHhccCCCc
Confidence            99999999999987754 223334444333

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.81  E-value=2.2e-18  Score=101.16  Aligned_cols=101  Identities=21%  Similarity=0.320  Sum_probs=83.6

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      ...|+|+|.+|++|...+..+.+|||+.+.+   +.+..+|+++..+.+|.|+|.|.|. +..   ....|.|+|||++.
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~i~V~d~~~   74 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKC---EGESVRSPVQKDTLSPEFDTQAIFY-RKK---PRSPIKIQVWNSNL   74 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEE---CCEEEEeCccCCCCCCcccceEEEE-ecC---CCCEEEEEEEECCC
Confidence            4679999999999998887889999999987   3456889999999999999999997 432   24689999999988


Q ss_pred             CCCCceeEEEEEecccccccccccceEeccc
Q psy12095         89 FSKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      .+ |++||.+.+++..+.  .....|++|..
T Consensus        75 ~~-d~~lG~~~~~l~~~~--~~~~~~~~l~~  102 (126)
T cd04046          75 LC-DEFLGQATLSADPND--SQTLRTLPLRK  102 (126)
T ss_pred             CC-CCceEEEEEecccCC--CcCceEEEccc
Confidence            75 799999999998763  34457888863

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.81  E-value=1.7e-18  Score=101.73  Aligned_cols=100  Identities=26%  Similarity=0.426  Sum_probs=84.2

Q ss_pred             EEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCcee
Q psy12095         16 VIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQI   95 (128)
Q Consensus        16 i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~l   95 (128)
                      |++|++|+.  ..+.+|||+++.+   +....+|+++.++.+|.|+|+|.|. +.........+.+.||+++..+++++|
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~---~~~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~i   75 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTF---RGVKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLI   75 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEE---CCEeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceE
Confidence            678999988  4678999999998   3346789999999999999999998 543222356899999999998899999


Q ss_pred             EEEEEecccccccccccceEeccccc
Q psy12095         96 GEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        96 G~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      |++.+++.++..+.....|++|.+..
T Consensus        76 G~~~~~l~~l~~~~~~~~~~~L~~~~  101 (127)
T cd08373          76 GSATVSLQDLVSEGLLEVTEPLLDSN  101 (127)
T ss_pred             EEEEEEhhHcccCCceEEEEeCcCCC
Confidence            99999999998887788999997654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.80  E-value=1.7e-18  Score=100.84  Aligned_cols=103  Identities=28%  Similarity=0.406  Sum_probs=85.6

Q ss_pred             EEEecCCCCCCCCCCCCCeEEEEEeCCC--C--CeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC---
Q psy12095         16 VIQAEDLPALDMGGTSDPYVKVYLLPDK--K--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR---   88 (128)
Q Consensus        16 i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~---   88 (128)
                      .++|++|+..+..+.+|||+++.+.+..  .  ...+|+++.++.+|.|+|+|.|. +....  ...+.++|||++.   
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~~~   82 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSKSK   82 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCCcC
Confidence            4678999988888899999999997543  1  25789999999999999999997 44332  3579999999997   


Q ss_pred             -CCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         89 -FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        89 -~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                       .+++++||++.+++.++..+.....|++|.+..
T Consensus        83 ~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~~  116 (120)
T cd04048          83 DLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGGK  116 (120)
T ss_pred             CCCCCcEEEEEEEEHHHHhcCCCcEEEEEccCCC
Confidence             789999999999999998777788899995543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.79  E-value=2.5e-18  Score=102.74  Aligned_cols=91  Identities=38%  Similarity=0.615  Sum_probs=79.4

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      |.|+|+|++|++|+..+. +.+|||+++.+   +.+..+|+++..+.+|.|+|.|.|. +...   ...+.++|||++.+
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~---g~~~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d~~   73 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL---GNQKVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKDTF   73 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEE---CCEEEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECCCC
Confidence            679999999999998776 78999999998   4567889999999999999999998 5532   46799999999999


Q ss_pred             CCCceeEEEEEeccccccc
Q psy12095         90 SKHDQIGEVKVALCQIDLA  108 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~  108 (128)
                      +.|++||.+.+++.++...
T Consensus        74 ~~dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          74 SKDDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             CCCCEEEEEEEEHHHhhhh
Confidence            9999999999998887543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.79  E-value=4.3e-18  Score=99.54  Aligned_cols=93  Identities=30%  Similarity=0.341  Sum_probs=77.1

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      ..+.|+|+|.+|++|+. +..+.+|||+++.+.   ..+.+|+++..+.+|.|+|+|.|......  ....|.|+|||++
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d   99 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRD   99 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCC
Confidence            34799999999999974 456788999999983   34788999999999999999999622221  3468999999999


Q ss_pred             CCCCCceeEEEEEeccccc
Q psy12095         88 RFSKHDQIGEVKVALCQID  106 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~  106 (128)
                      ..++|++||++.++|....
T Consensus       100 ~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         100 NGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCCeeEEEEEEecCCc
Confidence            9999999999999998654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.79  E-value=4.1e-18  Score=101.47  Aligned_cols=103  Identities=25%  Similarity=0.409  Sum_probs=84.3

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      ..|.|.|.+|++|++++     +|||.+.+  ++....+|+++..+.+|.|+|.|.|.+.+.    ...+.|.|+..+..
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~L--d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~~   79 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCL--DKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESDK   79 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEE--CCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccCc
Confidence            46889999999998765     79999999  344567999999999999999999984432    24689999765432


Q ss_pred             ----CCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         90 ----SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        90 ----~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                          .++.+||.+.|+++++..+...+.||+|.+..+.
T Consensus        80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~  117 (146)
T cd04013          80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN  117 (146)
T ss_pred             cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC
Confidence                2578999999999999988889999999887644

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.78  E-value=1.4e-17  Score=96.43  Aligned_cols=102  Identities=36%  Similarity=0.526  Sum_probs=79.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      |+|+|++|++|+..   +.+|||+.+.+.  +....+|++... .+|.|+|+|.|. +...+.....+.+.+|+.+....
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~   74 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDR   74 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCC
Confidence            78999999999876   688999999983  234568888888 999999999998 76554444678888999887666


Q ss_pred             CceeEEEEEecccccccccccceEecccccC
Q psy12095         92 HDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      +.++|.+.+  ..+..+...+.|++|.+.+.
T Consensus        75 ~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~  103 (117)
T cd08383          75 DIVIGKVAL--SKLDLGQGKDEWFPLTPVDP  103 (117)
T ss_pred             eeEEEEEEe--cCcCCCCcceeEEECccCCC
Confidence            666776554  55555777889999987643

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.77  E-value=4.1e-17  Score=96.63  Aligned_cols=105  Identities=27%  Similarity=0.334  Sum_probs=83.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC----------CeeecceeecCCCCee-cceEEEcccCCCCCCCCeE
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----------KKFETKVHRKTLNPVF-NETFVFKGVPYADAMNKTL   79 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~----------~~~~t~~~~~~~~p~~-~e~~~f~~~~~~~~~~~~l   79 (128)
                      ...|.+++|++|. ++..+.+|||+++.+.+.+.          +..+|+++.++.+|.| +|.|.|. +..    ...|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~----~~~L   75 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLP----TDVL   75 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCC----CCEE
Confidence            3678999999998 66678999999999976543          3688999999999999 9999998 542    2479


Q ss_pred             EEEEEEccCCCC---CceeEEEEEecccccccc---cccceEeccccc
Q psy12095         80 VFAIFDFDRFSK---HDQIGEVKVALCQIDLAQ---TIEEWRELQSVE  121 (128)
Q Consensus        80 ~v~v~~~~~~~~---~~~lG~~~~~l~~l~~~~---~~~~w~~L~~~~  121 (128)
                      .++|||++..++   +++||++.+++.++..+.   ....|+.|...+
T Consensus        76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~  123 (137)
T cd08691          76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT  123 (137)
T ss_pred             EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC
Confidence            999999765333   689999999999986553   245799987654

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.75  E-value=5.6e-17  Score=95.33  Aligned_cols=106  Identities=31%  Similarity=0.463  Sum_probs=85.1

Q ss_pred             CEEEEEEEEecCCCCCC--CCCCCCCeEEEEEeCCC---CCeeecceeecCC-CCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDK---KKKFETKVHRKTL-NPVFNETFVFKGVPYADAMNKTLVFAI   83 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~~~~---~~~~~t~~~~~~~-~p~~~e~~~f~~~~~~~~~~~~l~v~v   83 (128)
                      ..|+|+|++|++|+..+  ..+..|||+.+.+...+   ..+.+|+++..+. +|.|+|+|.|. +...+  ...+.++|
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V   78 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVV   78 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEE
Confidence            47899999999999876  46788999999986543   3567888887665 99999999998 54322  34689999


Q ss_pred             EEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         84 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |+++.. +++++|++.++++.+..+   ..|++|.+..+
T Consensus        79 ~d~~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~  113 (128)
T cd00275          79 YDEDSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKG  113 (128)
T ss_pred             EeCCCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCC
Confidence            999987 889999999999999554   36888876544

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.74  E-value=7.2e-17  Score=94.54  Aligned_cols=104  Identities=28%  Similarity=0.353  Sum_probs=82.5

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      ..|.|+|.+|. +...+..+.+|||+.+.+.  +....+|+++..+.+|.|++.|.|. +..    ...|.++|||++..
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~~~   73 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHHTL   73 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCCCC
Confidence            46899999998 4444446789999999983  2236789999999999999999998 542    35799999999999


Q ss_pred             CCCceeEEEEEeccccccccc-----ccceEeccccc
Q psy12095         90 SKHDQIGEVKVALCQIDLAQT-----IEEWRELQSVE  121 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~~~-----~~~w~~L~~~~  121 (128)
                      +.+++||++.++|.++.....     ...|++|....
T Consensus        74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~  110 (125)
T cd04021          74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN  110 (125)
T ss_pred             CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence            999999999999998754322     23589887544

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.74  E-value=6e-17  Score=94.96  Aligned_cols=99  Identities=31%  Similarity=0.456  Sum_probs=82.1

Q ss_pred             EEEEEEEEecCCCCCC--CCC--CCCCeEEEEEeCCCCCeeecceeecCCC--CeecceEEEcccCC-------------
Q psy12095         11 SLSVTVIQAEDLPALD--MGG--TSDPYVKVYLLPDKKKKFETKVHRKTLN--PVFNETFVFKGVPY-------------   71 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~--~~~--~~~p~~~~~~~~~~~~~~~t~~~~~~~~--p~~~e~~~f~~~~~-------------   71 (128)
                      .|+|.|.+|++++..+  ..+  .+|||+++++.+....+++|.++.++.+  |.||+.|.|. +..             
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeec
Confidence            4899999999966433  244  4899999999776566889999999998  9999999987 555             


Q ss_pred             --------CCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccc
Q psy12095         72 --------ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT  110 (128)
Q Consensus        72 --------~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~  110 (128)
                              +......+.+.|||.+.+++|+++|.++++|..+..+..
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~  126 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK  126 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence                    344557899999999999999999999999998876654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.72  E-value=2.3e-16  Score=90.36  Aligned_cols=83  Identities=24%  Similarity=0.303  Sum_probs=69.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEc---
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF---   86 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~---   86 (128)
                      |.|+|.+|++|.     +.+|||+.+.+.+.+.  ...+|+++..+.+|.|||+|.|. +..    ...+.+.|||+   
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~d~~~~   70 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCYEKCYS   70 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEEEcccc
Confidence            579999999995     4579999998876543  46899999999999999999998 652    35899999998   


Q ss_pred             ----cCCCCCceeEEEEEeccc
Q psy12095         87 ----DRFSKHDQIGEVKVALCQ  104 (128)
Q Consensus        87 ----~~~~~~~~lG~~~~~l~~  104 (128)
                          +..+.|+++|.+.+.|+.
T Consensus        71 ~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          71 KVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccccccCcccEEEEEEEEECH
Confidence                456789999998888765

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.70  E-value=4.1e-16  Score=89.44  Aligned_cols=92  Identities=25%  Similarity=0.471  Sum_probs=73.1

Q ss_pred             EEEEEecCCCCCCCCCCCCCeEEEEEeCCC---CCeeecceeecCCCCeecceEEEcccCC-CCC-CCCeEEEEEEEccC
Q psy12095         14 VTVIQAEDLPALDMGGTSDPYVKVYLLPDK---KKKFETKVHRKTLNPVFNETFVFKGVPY-ADA-MNKTLVFAIFDFDR   88 (128)
Q Consensus        14 v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~---~~~~~t~~~~~~~~p~~~e~~~f~~~~~-~~~-~~~~l~v~v~~~~~   88 (128)
                      +-.++|++|+..+..+.+|||+++++.+..   ....+|+++..+.+|.|+ .|.|. +.. ... ....|.++|||++.
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~-~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP-LQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE-HHHhcCCCcCCEEEEEEEEeCC
Confidence            345689999998888899999999986543   235789999999999999 67765 211 110 13689999999999


Q ss_pred             CCCCceeEEEEEecccccc
Q psy12095         89 FSKHDQIGEVKVALCQIDL  107 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~~  107 (128)
                      .++|++||++.++++++..
T Consensus        82 ~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          82 SGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCCcEEEEEEEEHHHHhc
Confidence            9999999999999999863

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.70  E-value=1.5e-16  Score=123.44  Aligned_cols=110  Identities=20%  Similarity=0.301  Sum_probs=90.5

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      -|.|+|+|.+|+++.  +..+.+||||++.+..  ....+|++++++.+|.|+|.|.|. +.... ....+.++|||++.
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~-~~~p~-~~~~l~iev~d~d~ 2052 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWA-FDSPP-KGQKLHISCKSKNT 2052 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeee-ecCCC-CCCceEEEEEecCc
Confidence            578999999999998  4478999999999942  225679999999999999999976 43322 23569999999999


Q ss_pred             CCCCceeEEEEEecccccccccccceEecccccCCCC
Q psy12095         89 FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG  125 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~  125 (128)
                      +++| .+|.+.|++.++..++..+.||+|.++++..|
T Consensus      2053 f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G 2088 (2102)
T PLN03200       2053 FGKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDG 2088 (2102)
T ss_pred             cCCC-CCceEEEEHHHHhcCceeeeeeecCcccccCC
Confidence            9655 89999999999988889999999997544444

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.70  E-value=2.5e-16  Score=85.97  Aligned_cols=85  Identities=44%  Similarity=0.728  Sum_probs=73.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      |+|+|.+|++|...+..+..+||+++.+........+|++...+.+|.|++.|.|. +.....  ..|.|+||+.+..++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~--~~l~~~V~~~~~~~~   77 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFP-LDDPDL--DSLSFEVWDKDSFGK   77 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEE-ESHGCG--TEEEEEEEEETSSSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeee-eecccc--cceEEEEEECCCCCC
Confidence            78999999999987778899999999997655456889999999999999999998 655443  449999999999998


Q ss_pred             CceeEEEE
Q psy12095         92 HDQIGEVK   99 (128)
Q Consensus        92 ~~~lG~~~   99 (128)
                      +++||++.
T Consensus        78 ~~~iG~~~   85 (85)
T PF00168_consen   78 DELIGEVK   85 (85)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEC
Confidence            99999863

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.67  E-value=5.4e-16  Score=89.07  Aligned_cols=86  Identities=24%  Similarity=0.366  Sum_probs=69.9

Q ss_pred             CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q psy12095         28 GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  107 (128)
Q Consensus        28 ~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~  107 (128)
                      .+.+|||+.+.+.  +....+|+++..+.+|.|+|.|.|. +..  .....|.|.||+++.+ ++++||.+.++|.++..
T Consensus        10 ~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~-v~~--~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~   83 (111)
T cd04052          10 TGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFL-VTD--RRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLID   83 (111)
T ss_pred             CCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEE-ecC--cCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHh
Confidence            5778999999983  2235678888889999999999998 542  2346799999999998 89999999999998843


Q ss_pred             -cccccceEeccc
Q psy12095        108 -AQTIEEWRELQS  119 (128)
Q Consensus       108 -~~~~~~w~~L~~  119 (128)
                       +.....||+|.+
T Consensus        84 ~~~~~~~w~~L~~   96 (111)
T cd04052          84 ATSVGQQWFPLSG   96 (111)
T ss_pred             hhhccceeEECCC
Confidence             345678999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PLN03008 Phospholipase D delta

Probab=99.65  E-value=2.3e-15  Score=108.83  Aligned_cols=87  Identities=28%  Similarity=0.440  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccc
Q psy12095         29 GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA  108 (128)
Q Consensus        29 ~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~  108 (128)
                      +.+|||+.+.+.  +.+..+|+++.++.||.|||+|.|. +...   ...|.+.|+|.+.++ +++||++.+++.++..|
T Consensus        75 ~tSDPYV~I~Lg--~~rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G  147 (868)
T PLN03008         75 ITSDPYVTVVVP--QATLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG  147 (868)
T ss_pred             CCCCceEEEEEC--CcceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCCC
Confidence            356999999992  3446689999999999999999998 5432   358999999999997 47999999999999999


Q ss_pred             ccccceEecccccC
Q psy12095        109 QTIEEWRELQSVEG  122 (128)
Q Consensus       109 ~~~~~w~~L~~~~~  122 (128)
                      ...+.|++|....+
T Consensus       148 e~vd~Wl~Ll~~~~  161 (868)
T PLN03008        148 ERISGWFPVLGASG  161 (868)
T ss_pred             CceEEEEEccccCC
Confidence            99999999977653

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.63  E-value=1.7e-14  Score=80.77  Aligned_cols=99  Identities=46%  Similarity=0.699  Sum_probs=80.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS   90 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~   90 (128)
                      .+.+.|.+|+++.........+||+++.+.+.+....+|+....+.+|.|++.|.|. +....  ...|.+++|+....+
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~   77 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFG   77 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCcc
Confidence            368999999999887665678999999986443346778888888899999999998 55432  468999999999887


Q ss_pred             CCceeEEEEEeccccccccccc
Q psy12095         91 KHDQIGEVKVALCQIDLAQTIE  112 (128)
Q Consensus        91 ~~~~lG~~~~~l~~l~~~~~~~  112 (128)
                      .+.++|.+.+++.++..+....
T Consensus        78 ~~~~~G~~~~~l~~~~~~~~~~   99 (101)
T smart00239       78 RDDFIGQVTIPLSDLLLGGRHE   99 (101)
T ss_pred             CCceeEEEEEEHHHcccCcccc
Confidence            8899999999998886665433

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.60  E-value=3.9e-14  Score=79.07  Aligned_cols=101  Identities=51%  Similarity=0.746  Sum_probs=83.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      |.|.|.+|+++.........+||+.+.+..  ....+|.+...+.+|.|++.|.|. +...  ....+.+++|+.+....
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~~~   75 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRFSK   75 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCCCC
Confidence            468899999998766667899999999843  356778888888999999999998 5532  34679999999998887


Q ss_pred             CceeEEEEEeccccc-ccccccceEec
Q psy12095         92 HDQIGEVKVALCQID-LAQTIEEWREL  117 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~-~~~~~~~w~~L  117 (128)
                      +.++|.+.+++..+. .......|++|
T Consensus        76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          76 DDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             CceeEEEEEeHHHhhhcCCcCcceecC
Confidence            899999999999987 66667788875

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG2059|consensus

Probab=99.56  E-value=1.7e-14  Score=101.82  Aligned_cols=107  Identities=30%  Similarity=0.500  Sum_probs=94.0

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      ...|.|+|.+|+||+..+..+..||||.+.+.  .....+|.++..++.|.|.|.|.|. ++...   ..+.+.|||.+ 
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~F---~~l~fYv~D~d-   76 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFE-IPRTF---RYLSFYVWDRD-   76 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEe-cCcce---eeEEEEEeccc-
Confidence            45789999999999999999999999999984  3446779999999999999999999 87654   56999999999 


Q ss_pred             CCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         89 FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      +++|+.||.+.|.-+++......+.|+.|.+-+.
T Consensus        77 ~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~  110 (800)
T KOG2059|consen   77 LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDP  110 (800)
T ss_pred             cccccccceeeeeHHHHhhCCCCccceeccccCC
Confidence            9999999999999888877778899999987543

>PLN02223 phosphoinositide phospholipase C

Probab=99.53  E-value=2.7e-13  Score=94.67  Aligned_cols=108  Identities=18%  Similarity=0.317  Sum_probs=83.5

Q ss_pred             CEEEEEEEEecCCCCC-----CCCCCCCCeEEEEEeC--CCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEE
Q psy12095         10 NSLSVTVIQAEDLPAL-----DMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFA   82 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~-----~~~~~~~p~~~~~~~~--~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~   82 (128)
                      ..|+|+|+.|++++..     +....+|||+++.+..  .+....+|.+..++.+|.|+|+|.|. +...++  ..|+|.
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~-i~~PEL--AlLrf~  485 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFP-LTYPDL--ALISFE  485 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEE-EEccCc--eEEEEE
Confidence            4689999999987521     2245679999999853  33445677766788999999999999 655443  568999


Q ss_pred             EEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         83 IFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        83 v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      |+|++....++|+|+..+++..++.|.   .+++|.++.+.
T Consensus       486 V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~  523 (537)
T PLN02223        486 VYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGK  523 (537)
T ss_pred             EEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcC
Confidence            999998888999999999999998875   45677665543

>KOG1011|consensus

Probab=99.53  E-value=2e-14  Score=101.49  Aligned_cols=103  Identities=28%  Similarity=0.471  Sum_probs=86.0

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC-
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR-   88 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~-   88 (128)
                      ..+++++++|++|..++..+++|||+...+   +..+.+|+++...++|.|+|.|+|.|....    ..|.+.|||.+. 
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv---~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~d  367 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQV---GKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDND  367 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEee---cccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCccc
Confidence            468899999999999999999999999998   455677999999999999999999954433    479999999773 


Q ss_pred             ----------CCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         89 ----------FSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        89 ----------~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                                -..|+|+|+..|.+..+.  ...+-||.|..+.
T Consensus       368 lksklrqkl~resddflgqtvievrtls--gemdvwynlekrt  408 (1283)
T KOG1011|consen  368 LKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRT  408 (1283)
T ss_pred             HHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhcc
Confidence                      356889999999988773  3468899997653

>PLN02952 phosphoinositide phospholipase C

Probab=99.52  E-value=4.2e-13  Score=95.19  Aligned_cols=109  Identities=22%  Similarity=0.318  Sum_probs=85.9

Q ss_pred             CCEEEEEEEEecCCCCC------CCCCCCCCeEEEEEeC--CCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          9 ANSLSVTVIQAEDLPAL------DMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~------~~~~~~~p~~~~~~~~--~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      ...|+|+|+.|++++..      +.....|||+++.+..  ....+.+|+++.++.+|.|+++|.|. +...++  ..++
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--Allr  545 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALLR  545 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEEE
Confidence            35799999999887521      1124468999998853  33456789999888999999999998 655443  5689


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      |.|+|++..+.++++|+..+++..+..|.   .|++|.+..+.
T Consensus       546 f~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~  585 (599)
T PLN02952        546 IEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGE  585 (599)
T ss_pred             EEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCC
Confidence            99999998888999999999999998876   48999766554

>KOG0905|consensus

Probab=99.47  E-value=8.9e-14  Score=102.87  Aligned_cols=117  Identities=35%  Similarity=0.610  Sum_probs=102.0

Q ss_pred             eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      +++|+  ++.|.|-|.-+++|+-...+..+|||++.++.|+..+  +.||+++..+.+|.|||...+++.+.+.+....+
T Consensus      1518 sIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReL 1595 (1639)
T KOG0905|consen 1518 SISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQREL 1595 (1639)
T ss_pred             EEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhhee
Confidence            45565  9999999999999987766788999999999887754  6789999999999999999998777776666889


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      .++||+.+....+.++|.+.|+|......+...+||.|...
T Consensus      1596 Q~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1596 QVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             eeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            99999999999999999999999998777777799998653

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.45  E-value=1.4e-12  Score=92.44  Aligned_cols=109  Identities=20%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             CCEEEEEEEEecCCCCC------CCCCCCCCeEEEEEeC--CCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          9 ANSLSVTVIQAEDLPAL------DMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~------~~~~~~~p~~~~~~~~--~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      ...|.|+|+.+++++..      +.....|||+++.+..  ....+.+|++..++.+|.|+++|.|. +...++  ..|+
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPEL--AllR  544 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPEL--ALLR  544 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCce--eEEE
Confidence            35799999999986421      2234579999998853  33445678887889999999999998 655544  5689


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      |.|+|++....++|+|+..+++..+..|..   .++|.+..+.
T Consensus       545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~  584 (598)
T PLN02230        545 VEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGV  584 (598)
T ss_pred             EEEEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcC
Confidence            999999988899999999999999988754   4566555443

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.42  E-value=3.8e-12  Score=90.19  Aligned_cols=108  Identities=21%  Similarity=0.293  Sum_probs=83.3

Q ss_pred             CCEEEEEEEEecCCC---C---CCCCCCCCCeEEEEEe--CCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          9 ANSLSVTVIQAEDLP---A---LDMGGTSDPYVKVYLL--PDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~---~---~~~~~~~~p~~~~~~~--~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      ...|+|+|+.+++++   +   .+.....|||+++.+.  +.+..+.+|+++.++.+|.|+++|.|. +...++  ..|+
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeL--AllR  527 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPEL--ALLR  527 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCce--eEEE
Confidence            347999999998753   1   1123467999999885  344556789999988999999999998 655443  5689


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      +.|+|++....++|+|+..+++..+..|..   .++|.+..+
T Consensus       528 f~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g  566 (581)
T PLN02222        528 LEVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKG  566 (581)
T ss_pred             EEEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCc
Confidence            999999888889999999999999988754   456655544

>KOG0169|consensus

Probab=99.40  E-value=1.7e-12  Score=92.74  Aligned_cols=101  Identities=24%  Similarity=0.409  Sum_probs=80.4

Q ss_pred             EEEEEEEEecCCCCCC-C---CCCCCCeEEEEEe--CCCCCeeecceee-cCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095         11 SLSVTVIQAEDLPALD-M---GGTSDPYVKVYLL--PDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADAMNKTLVFAI   83 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~-~---~~~~~p~~~~~~~--~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v   83 (128)
                      .|.|.|+.++++.+.. .   ....+||+.+.+.  |....+.+|+++. ++.+|.|+|+|.|. +...++  .-|++.|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPEL--AliRF~V  693 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPEL--ALIRFEV  693 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eeccce--eEEEEEE
Confidence            6999999999766432 1   2457899888874  3444577899554 88899999999999 776665  5689999


Q ss_pred             EEccCCCCCceeEEEEEecccccccccccce
Q psy12095         84 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEW  114 (128)
Q Consensus        84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w  114 (128)
                      +|++..++|+|+|+..+++..+..|..+-.-
T Consensus       694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyRhVpL  724 (746)
T KOG0169|consen  694 HDYDYIGKDDFIGQTTLPVSELRQGYRHVPL  724 (746)
T ss_pred             EecCCCCcccccceeeccHHHhhCceeeeee
Confidence            9999999999999999999999888654433

>PLN02228 Phosphoinositide phospholipase C

Probab=99.38  E-value=9.6e-12  Score=87.94  Aligned_cols=107  Identities=20%  Similarity=0.328  Sum_probs=82.2

Q ss_pred             CEEEEEEEEecCCC---CCC---CCCCCCCeEEEEEeC--CCCCeeecceeecCCCCee-cceEEEcccCCCCCCCCeEE
Q psy12095         10 NSLSVTVIQAEDLP---ALD---MGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVF-NETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus        10 ~~l~v~i~~a~~l~---~~~---~~~~~~p~~~~~~~~--~~~~~~~t~~~~~~~~p~~-~e~~~f~~~~~~~~~~~~l~   80 (128)
                      ..|+|+|+.|++++   +..   .....|||+++.+.+  .+....+|+++.++.+|.| +++|.|. +...++  ..|+
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pEL--A~lR  507 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPEL--ALLW  507 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCce--eEEE
Confidence            47999999999873   111   134579999998853  3445678888888899999 8999998 655543  5689


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      +.|+|++..+.++++|+..+++..+..|..   .++|.+..+
T Consensus       508 f~V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G  546 (567)
T PLN02228        508 FKVQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAG  546 (567)
T ss_pred             EEEEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCC
Confidence            999999888889999999999999987754   455655544

>KOG1328|consensus

Probab=99.37  E-value=3.5e-13  Score=95.99  Aligned_cols=104  Identities=38%  Similarity=0.591  Sum_probs=90.5

Q ss_pred             eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC----CeeecceeecCCCCeecceEEEcccCCCCCC--
Q psy12095          2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----KKFETKVHRKTLNPVFNETFVFKGVPYADAM--   75 (128)
Q Consensus         2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~----~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~--   75 (128)
                      .+.|+.....|.|.|+-|+++.+.+.+|.+|||+.+.+.|.-.    ..++|++++.+++|.|+|+|.|. ++.+.-.  
T Consensus       939 r~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-Vp~e~c~te 1017 (1103)
T KOG1328|consen  939 RAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-VPPEPCSTE 1017 (1103)
T ss_pred             EEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-cCccccccc
Confidence            4678899999999999999999999999999999999976542    36789999999999999999999 7765422  


Q ss_pred             CCeEEEEEEEccCCCCCceeEEEEEeccccc
Q psy12095         76 NKTLVFAIFDFDRFSKHDQIGEVKVALCQID  106 (128)
Q Consensus        76 ~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~  106 (128)
                      ...+.++|+|++-...++|-|.+.+.|+++.
T Consensus      1018 ~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1018 TAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cceEEEEeeccceecccccchHHHHhhCCCC
Confidence            3458899999999999999999999988873

>PLN02270 phospholipase D alpha

Probab=99.30  E-value=5.2e-11  Score=86.61  Aligned_cols=107  Identities=19%  Similarity=0.306  Sum_probs=86.5

Q ss_pred             CCEEEEEEEEecCCCCCC------------------CCCCCCCeEEEEEeCCCCCeeecceeecC-CCCeecceEEEccc
Q psy12095          9 ANSLSVTVIQAEDLPALD------------------MGGTSDPYVKVYLLPDKKKKFETKVHRKT-LNPVFNETFVFKGV   69 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~------------------~~~~~~p~~~~~~~~~~~~~~~t~~~~~~-~~p~~~e~~~f~~~   69 (128)
                      .|.|.++|.+|++|+..+                  ..+.++||+.+.+  .+.+..+|+++.+. .+|.|+|.|...+-
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcEEEEEeecCCCCCCCccccceEEeec
Confidence            578999999999997521                  1245699999998  35567899999864 69999999998733


Q ss_pred             CCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        70 ~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      ..    ...|.+.|.|.+.++. .+||.+.++..++..|...+.|+++.+..+
T Consensus        85 h~----~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~  132 (808)
T PLN02270         85 HM----ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDK  132 (808)
T ss_pred             cC----cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCC
Confidence            22    2579999999888875 499999999999999999999999987654

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.29  E-value=2.8e-11  Score=90.00  Aligned_cols=107  Identities=34%  Similarity=0.544  Sum_probs=87.8

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      ..+.|+|.+..|+||+..+.++-+|||+.+.+-  +...++|++++.+++|.|||.+... +....  ...+.+.++|++
T Consensus      1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln--~k~vyktkv~KktlNPvwNEe~~i~-v~~r~--~D~~~i~v~Dwd 1112 (1227)
T COG5038        1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN--EKSVYKTKVVKKTLNPVWNEEFTIE-VLNRV--KDVLTINVNDWD 1112 (1227)
T ss_pred             ccCcEEEEEeccCCCcccccCCCCCceEEEEec--ceecccccchhccCCCCccccceEe-eeccc--cceEEEEEeecc
Confidence            488999999999999999989999999999983  3347889999999999999999988 54332  356889999999


Q ss_pred             CCCCCceeEEEEEecccccccccccceEeccc
Q psy12095         88 RFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      .-.+++.||.+.++|..+..+.....-.+|.+
T Consensus      1113 ~~~knd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038        1113 SGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred             cCCCccccccccccHhhcCcCCccceeeeccC
Confidence            99999999999999999876654443333433

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.24  E-value=2.7e-11  Score=65.18  Aligned_cols=101  Identities=27%  Similarity=0.435  Sum_probs=77.3

Q ss_pred             EEEEEEecCCC-CCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         13 SVTVIQAEDLP-ALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        13 ~v~i~~a~~l~-~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      .+++++++++. +..-...+..|++--+.-.....++|++...+.+|.|+|+|.|. +...++.+.++.++|+.  ...+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCc
Confidence            47888999887 33323444567766553333346788888899999999999999 88888888889999988  4467


Q ss_pred             CceeEEEEEecccccccccccceEec
Q psy12095         92 HDQIGEVKVALCQIDLAQTIEEWREL  117 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~~~~~~~~w~~L  117 (128)
                      .+.+|.+.+.|+++.. +..++|.++
T Consensus        79 Ke~iG~~sL~l~s~ge-eE~~HW~e~  103 (103)
T cd08684          79 KRTIGECSLSLRTLST-QETDHWLEI  103 (103)
T ss_pred             cceeeEEEeecccCCH-HHhhhhhcC
Confidence            7899999999999854 356788764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.20  E-value=1.5e-10  Score=86.21  Aligned_cols=96  Identities=29%  Similarity=0.523  Sum_probs=79.3

Q ss_pred             CCCEEEEEEEEecCCCCCC--CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095          8 NANSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD   85 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~   85 (128)
                      .-|.+.++|.+|+++...+  .++..|||+.+..  ++....||++.+.+.+|.|||++... +...   ...|.+++||
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~--~~r~~gkT~v~~nt~nPvwNEt~Yi~-lns~---~d~L~LslyD  507 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTF--SDRVIGKTRVKKNTLNPVWNETFYIL-LNSF---TDPLNLSLYD  507 (1227)
T ss_pred             eeEEEEEEEeeccCcccccccccCCCCceEEEEe--ccccCCccceeeccCCccccceEEEE-eccc---CCceeEEEEe
Confidence            3578999999999998776  5788999999986  33445589999999999999999876 4322   3679999999


Q ss_pred             ccCCCCCceeEEEEEecccccccc
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDLAQ  109 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~~~  109 (128)
                      .+....|+.+|.+.+.|..+....
T Consensus       508 ~n~~~sd~vvG~~~l~L~~L~~~~  531 (1227)
T COG5038         508 FNSFKSDKVVGSTQLDLALLHQNP  531 (1227)
T ss_pred             ccccCCcceeeeEEechHHhhhcc
Confidence            999999999999999988775443

>KOG1328|consensus

Probab=99.16  E-value=4.7e-12  Score=90.43  Aligned_cols=108  Identities=31%  Similarity=0.557  Sum_probs=84.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC----------------------------eeecceeecCCCCeecc
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK----------------------------KFETKVHRKTLNPVFNE   62 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~----------------------------~~~t~~~~~~~~p~~~e   62 (128)
                      .+.|.+..|.++..++.++.+|||+.+.+.+...+                            .+-|++.+.+++|.|+|
T Consensus       115 ~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~E  194 (1103)
T KOG1328|consen  115 LLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSE  194 (1103)
T ss_pred             HHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhh
Confidence            34456677889999999999999998876442210                            12366777899999999


Q ss_pred             eEEEcccCCCCCCCCeEEEEEEEcc---------------------------------CCC---CCceeEEEEEeccccc
Q psy12095         63 TFVFKGVPYADAMNKTLVFAIFDFD---------------------------------RFS---KHDQIGEVKVALCQID  106 (128)
Q Consensus        63 ~~~f~~~~~~~~~~~~l~v~v~~~~---------------------------------~~~---~~~~lG~~~~~l~~l~  106 (128)
                      .|.|.   .+++....+.+.+||++                                 ..+   .|+|+|++.|+|.+++
T Consensus       195 kF~F~---IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  195 KFQFT---IEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             heeee---hhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            99998   56777788999999987                                 112   3889999999999995


Q ss_pred             ccccccceEecccccC
Q psy12095        107 LAQTIEEWRELQSVEG  122 (128)
Q Consensus       107 ~~~~~~~w~~L~~~~~  122 (128)
                      . .+.++||.|++++.
T Consensus       272 ~-~Gld~WFkLepRS~  286 (1103)
T KOG1328|consen  272 P-DGLDQWFKLEPRSD  286 (1103)
T ss_pred             c-chHHHHhccCcccc
Confidence            4 46899999998764

>KOG1031|consensus

Probab=99.13  E-value=2.6e-10  Score=80.36  Aligned_cols=107  Identities=30%  Similarity=0.545  Sum_probs=90.3

Q ss_pred             CEEEEEEEEecCCCCCCCCC-CCCCeEEEEEeCCCCCeeecceeecCCCCeec-ceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095         10 NSLSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN-ETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~-~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~-e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      +.|.|.|..|++|+-++..+ ..|.|+.+.+   +...++|.+-..+++|.|| +.|.|. +...++.+..+.|.+.|++
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~---~n~t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~d   78 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF---ANTTFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHD   78 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEe---cccceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEeccc
Confidence            67889999999999887644 4688999988   4556789999999999999 888998 8788888899999999999


Q ss_pred             CCCCCceeEEEEEeccccccc----------ccccceEecccc
Q psy12095         88 RFSKHDQIGEVKVALCQIDLA----------QTIEEWRELQSV  120 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~----------~~~~~w~~L~~~  120 (128)
                      ..+.++-||.+.++++.+...          ....+|+++.+.
T Consensus        79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt  121 (1169)
T KOG1031|consen   79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT  121 (1169)
T ss_pred             ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee
Confidence            999999999999999886432          335689998765

>KOG1013|consensus

Probab=99.12  E-value=2e-10  Score=75.46  Aligned_cols=112  Identities=32%  Similarity=0.503  Sum_probs=93.0

Q ss_pred             eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      ++.|......+.|+++.+..|..++.++-+|||+..++.++...  +.+|.+.+.+.+|.|++.|.+. +....+....+
T Consensus       225 sl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~-i~pgdLa~~kv  303 (362)
T KOG1013|consen  225 SLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD-IGPGDLAYKKV  303 (362)
T ss_pred             eeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc-CCccchhcceE
Confidence            67888889999999999999999999999999999998765443  6778889999999999999999 88888877889


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEe
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE  116 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~  116 (128)
                      .|.+|+.+..+..+++|-....  ...++...++|+.
T Consensus       304 ~lsvgd~~~G~s~d~~GG~~~g--~~rr~~v~~h~gr  338 (362)
T KOG1013|consen  304 ALSVGDYDIGKSNDSIGGSMLG--GYRRGEVHKHWGR  338 (362)
T ss_pred             EEeecccCCCcCccCCCccccc--ccccchhhcCccc
Confidence            9999999998888898875543  3444555556654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.05  E-value=1.9e-09  Score=60.34  Aligned_cols=85  Identities=21%  Similarity=0.316  Sum_probs=65.1

Q ss_pred             EEEEEEEecCCCCCC---CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095         12 LSVTVIQAEDLPALD---MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus        12 l~v~i~~a~~l~~~~---~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      |.|+|..++++....   ..+.++||+.+.+.  +..+.+|+.   +.+|.|+|.|.|. +-    ....+.+.|||+..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~-Vd----k~nEiel~VyDk~~   70 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIP-VE----KNNEEEVIVYDKGG   70 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEE-ec----CCcEEEEEEEeCCC
Confidence            578999999998666   46778999999983  333566665   4899999999998 52    24689999999865


Q ss_pred             CCCCceeEEEEEecccccc
Q psy12095         89 FSKHDQIGEVKVALCQIDL  107 (128)
Q Consensus        89 ~~~~~~lG~~~~~l~~l~~  107 (128)
                       .....+|...+.++++..
T Consensus        71 -~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          71 -DQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             -CeecceeeehhhHHHHHH
Confidence             234479999999888743

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2059|consensus

Probab=98.97  E-value=1.3e-09  Score=77.82  Aligned_cols=113  Identities=25%  Similarity=0.379  Sum_probs=81.9

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeC-CCCCeeecceeecCCCCeecceEEEcccCCC-------------CCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP-DKKKKFETKVHRKTLNPVFNETFVFKGVPYA-------------DAM   75 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~-------------~~~   75 (128)
                      ..+.+.+.+++++-|.. ++..|||+++.... ......+|++.+.+.+|.|+|.|.|. +...             +..
T Consensus       131 ~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~~~s~ks~~~~~~e~~  208 (800)
T KOG2059|consen  131 SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-VTREESYSKKSLFMPEEEDD  208 (800)
T ss_pred             CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeee-eccccccccchhcCcccCCc
Confidence            34455555666655554 55689999998732 22234679999999999999999998 4433             112


Q ss_pred             CCeEEEEEEE-ccCCCCCceeEEEEEecccccccccccceEecccccCCC
Q psy12095         76 NKTLVFAIFD-FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  124 (128)
Q Consensus        76 ~~~l~v~v~~-~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~  124 (128)
                      ...+++.+|+ .+....+.|+|++.+++...........||-|.+.+..+
T Consensus       209 ~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~  258 (800)
T KOG2059|consen  209 MLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGE  258 (800)
T ss_pred             eeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcc
Confidence            3568899998 555666899999999998887666677899999875433

>KOG1264|consensus

Probab=98.87  E-value=2.7e-08  Score=72.57  Aligned_cols=95  Identities=29%  Similarity=0.511  Sum_probs=74.4

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecc-eeecCCCCeec-ceEEEcccCCCCCCCCeEEEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETK-VHRKTLNPVFN-ETFVFKGVPYADAMNKTLVFAIFD   85 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~-~~~~~~~p~~~-e~~~f~~~~~~~~~~~~l~v~v~~   85 (128)
                      ..|.|.++.|++|+..+ -+-..||+.+.+....  ..+++|. +..+.++|.|+ +.|.|. +...+  -..|++.|++
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe--~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFE-IYNPE--FAFLRFVVYE 1140 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEE-eeCCc--eEEEEEEEec
Confidence            46889999999998554 3344599999885322  2355555 45689999999 999999 66544  3679999999


Q ss_pred             ccCCCCCceeEEEEEeccccccc
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDLA  108 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~~  108 (128)
                      .+-++...|||++.+++..++.|
T Consensus      1141 eDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             ccccCCcceeeeeecchhhhhcc
Confidence            99999888999999999998766

>KOG1013|consensus

Probab=98.84  E-value=2.2e-10  Score=75.26  Aligned_cols=108  Identities=35%  Similarity=0.546  Sum_probs=91.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |.+.|...+..+.++|.+|.+|.+++.++..|||++..+++....  +.+|++..++.||.|+++.....+..+......
T Consensus        84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~  163 (362)
T KOG1013|consen   84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV  163 (362)
T ss_pred             hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence            456788899999999999999999999999999999999875543  577888889999999988877766666655677


Q ss_pred             EEEEEEEccCCCCCceeEEEEEeccccccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLA  108 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~  108 (128)
                      +++.+.+...+.+++++|+..+++..+...
T Consensus       164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~  193 (362)
T KOG1013|consen  164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPL  193 (362)
T ss_pred             hheeeccCcccccccCcccchhhhhccChh
Confidence            889999999999999999999887776543

>KOG1011|consensus

Probab=98.71  E-value=1.3e-07  Score=67.92  Aligned_cols=111  Identities=27%  Similarity=0.378  Sum_probs=86.3

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEe-C---CCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-P---DKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD   85 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~-~---~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~   85 (128)
                      ..++|.|+.|.+|.=.. .+..-||+.+.+. |   +..+++.|+...++-.|.+||+|.|-......++...+.+.|-|
T Consensus      1125 hkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKD 1203 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKD 1203 (1283)
T ss_pred             ceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehh
Confidence            47888999998886432 4566799988774 2   22345667777788889999999998333344555778999988


Q ss_pred             ccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      +--...|+.+|.+.+.|.++....+...|++|..+-
T Consensus      1204 YCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrri 1239 (1283)
T KOG1011|consen 1204 YCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRI 1239 (1283)
T ss_pred             heeecccceeeeeeeehhhHhhcCceeEeeeccccc
Confidence            888888999999999999998888889999997653

>PLN02352 phospholipase D epsilon

Probab=98.70  E-value=2.4e-07  Score=67.79  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=72.4

Q ss_pred             CCEEEEEEEEecCCCCCC----C-CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALD----M-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI   83 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~----~-~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v   83 (128)
                      .|.|.++|.+|+-+...-    . ....+||+.+.+  ++.+..+|   .+..+|.|+|.|...+-...   ...|.+.|
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~v   80 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITL   80 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEE
Confidence            478999999997432211    0 112289999998  34456667   44559999999998733221   24688888


Q ss_pred             EEccCCCCCceeEEEEEeccccccccc-ccceEecccccC
Q psy12095         84 FDFDRFSKHDQIGEVKVALCQIDLAQT-IEEWRELQSVEG  122 (128)
Q Consensus        84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~-~~~w~~L~~~~~  122 (128)
                      .|     .-.+||.+.++...+..|.. .++|+++.+..+
T Consensus        81 k~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~  115 (758)
T PLN02352         81 KT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENG  115 (758)
T ss_pred             ec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC
Confidence            77     25689999999999988866 899999987654

>KOG1326|consensus

Probab=98.64  E-value=3.3e-08  Score=73.12  Aligned_cols=92  Identities=32%  Similarity=0.450  Sum_probs=75.2

Q ss_pred             cCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCe--eecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEE
Q psy12095          7 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK--FETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIF   84 (128)
Q Consensus         7 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~--~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~   84 (128)
                      |-.-.++|.+++|.+|.+.+.++..|||+.+.++   ...  -+...+..+++|.|++.|.+.+.-.   ....+.+.||
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp---~ek~l~v~vy  683 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLP---FEKDLIVEVY  683 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccc---hhhcceeEEE
Confidence            3445788999999999999999999999999983   332  3466788999999999888773222   2356899999


Q ss_pred             EccCCCCCceeEEEEEeccc
Q psy12095         85 DFDRFSKHDQIGEVKVALCQ  104 (128)
Q Consensus        85 ~~~~~~~~~~lG~~~~~l~~  104 (128)
                      +++.+++|+.+|+..+.|+.
T Consensus       684 d~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  684 DHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             Eeecccccchhhceehhhhh
Confidence            99999999999999998775

>KOG1326|consensus

Probab=98.50  E-value=3e-08  Score=73.37  Aligned_cols=116  Identities=25%  Similarity=0.264  Sum_probs=88.0

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCC------CCCCeEEE
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYAD------AMNKTLVF   81 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~------~~~~~l~v   81 (128)
                      ....+++.|.+|+.|...+..+.+|||+.+..   ..+.++|.++.++++|.|+++..|..+....      .+-..+.+
T Consensus       204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f---~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~  280 (1105)
T KOG1326|consen  204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEF---CGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF  280 (1105)
T ss_pred             hhhhhHHHHHHHHhhcCCCcccCCCchhhhhc---ccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence            56678889999999998888889999999976   4567789999999999999999987322111      01145789


Q ss_pred             EEEEccCCCCCceeEEEEEecccccccccccceEecccccCCCCcC
Q psy12095         82 AIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQL  127 (128)
Q Consensus        82 ~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~  127 (128)
                      ++||.+..+.++++|+......-+.. ...-.|+++..+..-.+++
T Consensus       281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~  325 (1105)
T KOG1326|consen  281 EVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDV  325 (1105)
T ss_pred             EeehhhhhchHHhhcccccceEEEec-CCccceEEeecccccccch
Confidence            99999999999999987765443322 4456799988776555543

>KOG2060|consensus

Probab=98.50  E-value=1.5e-07  Score=63.27  Aligned_cols=112  Identities=28%  Similarity=0.452  Sum_probs=86.8

Q ss_pred             cCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095          7 FNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI   83 (128)
Q Consensus         7 ~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v   83 (128)
                      ...+.+.|.|++|++|..+. ....+.||+++++.+.+.  .+.+|+....+.+|.+.+...|+ -++   ....+.+.+
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~sp---~~k~Lq~tv  341 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-QSP---PGKYLQGTV  341 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-cCC---CccEEEEEE
Confidence            46789999999999998553 234678999999986553  35678888888899888887777 222   346788888


Q ss_pred             E-EccCCCCCceeEEEEEecccccccc-cccceEecccccC
Q psy12095         84 F-DFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQSVEG  122 (128)
Q Consensus        84 ~-~~~~~~~~~~lG~~~~~l~~l~~~~-~~~~w~~L~~~~~  122 (128)
                      | |+..+.++.|+|.+++-+.++.... ....||+|.+...
T Consensus       342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss  382 (405)
T KOG2060|consen  342 WGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS  382 (405)
T ss_pred             eccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence            8 4667777889999999999997665 6679999987653

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.46  E-value=7.9e-07  Score=51.59  Aligned_cols=86  Identities=19%  Similarity=0.293  Sum_probs=62.8

Q ss_pred             CCCeEEEEEeC-CCCCeeecceeecCCCCeecceEEEcccCC-------------CCCCCCeEEEEEEEccC--------
Q psy12095         31 SDPYVKVYLLP-DKKKKFETKVHRKTLNPVFNETFVFKGVPY-------------ADAMNKTLVFAIFDFDR--------   88 (128)
Q Consensus        31 ~~p~~~~~~~~-~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~-------------~~~~~~~l~v~v~~~~~--------   88 (128)
                      .|+|+.+.+.- .+....+|+++.++..|.|+..+.|. ++.             +-++...+.+++|+...        
T Consensus        33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~  111 (143)
T cd08683          33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK  111 (143)
T ss_pred             cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence            48999998643 23345679999999999999999987 331             11234679999998653        


Q ss_pred             --CCCCceeEEEEEecccccc-cccccceEec
Q psy12095         89 --FSKHDQIGEVKVALCQIDL-AQTIEEWREL  117 (128)
Q Consensus        89 --~~~~~~lG~~~~~l~~l~~-~~~~~~w~~L  117 (128)
                        ..+|-.+|.+.+++.++.. ..+..+||++
T Consensus       112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683         112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence              2345589999999998744 4567899985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=98.23  E-value=2e-06  Score=62.48  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             EEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEE
Q psy12095          3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFA   82 (128)
Q Consensus         3 ~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~   82 (128)
                      ++.++=.|.+.++++.|+    ++   ..|+|+.+..  .+.+.++|...+++.+|.||+..-|. +...+.  ...++.
T Consensus        47 ~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~--~g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~--~~~~~~  114 (644)
T PLN02964         47 VSAEDFSGIALLTLVGAE----MK---FKDKWLACVS--FGEQTFRTETSDSTDKPVWNSEKKLL-LEKNGP--HLARIS  114 (644)
T ss_pred             eecccccCeEEEEeehhh----hc---cCCcEEEEEE--ecceeeeeccccccCCcccchhhceE-eccCCc--ceEEEE
Confidence            345556778888888876    22   3488765533  37889999999999999999887776 555443  346999


Q ss_pred             EEEccCCCCCceeEEEEEeccccccccccc--ceEecccccC
Q psy12095         83 IFDFDRFSKHDQIGEVKVALCQIDLAQTIE--EWRELQSVEG  122 (128)
Q Consensus        83 v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~--~w~~L~~~~~  122 (128)
                      ||+.+.++.++.+|.++++|.++...+..+  .-|++.++.+
T Consensus       115 ~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg  156 (644)
T PLN02964        115 VFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS  156 (644)
T ss_pred             EEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999888775443322  2355555443

>KOG3837|consensus

Probab=98.17  E-value=1.8e-06  Score=58.98  Aligned_cols=118  Identities=19%  Similarity=0.274  Sum_probs=86.9

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEE--eCCCCCeeecceeecCCCCeecceEEEcccCCCC-C--------CC
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVFKGVPYAD-A--------MN   76 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~--~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~-~--------~~   76 (128)
                      +...|.+.|+++++++..+-....|.|+++..  .++..+..+|.+++.+.+|.|++.|-+. +..-. .        .+
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr  443 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKR  443 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHh
Confidence            56677888888887764432445678888765  2334567889999999999999998876 44310 1        12


Q ss_pred             CeEEEEEEEccCC-CCCceeEEEEEecccccccccccceEecccccCCCCc
Q psy12095         77 KTLVFAIFDFDRF-SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQ  126 (128)
Q Consensus        77 ~~l~v~v~~~~~~-~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~  126 (128)
                      ..+.|++|+++.+ ..|+++|.+.+.|.-+.........++|.+..+..|.
T Consensus       444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGG  494 (523)
T KOG3837|consen  444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGG  494 (523)
T ss_pred             cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCC
Confidence            5689999998864 6778999999999998877777889998776554443

>KOG1265|consensus

Probab=98.13  E-value=8.3e-06  Score=60.50  Aligned_cols=91  Identities=30%  Similarity=0.502  Sum_probs=70.5

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEe--CCCC--Ceeecceee-cCCCCeec-ceEEEcccCCCCCCCCeEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL--PDKK--KKFETKVHR-KTLNPVFN-ETFVFKGVPYADAMNKTLVFA   82 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~--~~~~--~~~~t~~~~-~~~~p~~~-e~~~f~~~~~~~~~~~~l~v~   82 (128)
                      ++.+.|+|++|+.|..+.    ...||.+.+.  |...  +.++|++.. ++++|.|+ +.|.|.-+...++  ..|+|.
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRia  775 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIA  775 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeee
Confidence            467899999999998774    4689988774  3322  356788876 78899999 7888886655554  569999


Q ss_pred             EEEccCCCCCceeEEEEEecccccccc
Q psy12095         83 IFDFDRFSKHDQIGEVKVALCQIDLAQ  109 (128)
Q Consensus        83 v~~~~~~~~~~~lG~~~~~l~~l~~~~  109 (128)
                      ||+.+    ++++|+=.+++..+..|.
T Consensus       776 vyeEg----gK~ig~RIlpvd~l~~GY  798 (1189)
T KOG1265|consen  776 VYEEG----GKFIGQRILPVDGLNAGY  798 (1189)
T ss_pred             eeccC----CceeeeeccchhcccCcc
Confidence            99866    679999999999887764

>KOG1327|consensus

Probab=98.06  E-value=3.4e-05  Score=54.68  Aligned_cols=104  Identities=24%  Similarity=0.386  Sum_probs=73.0

Q ss_pred             EEEecCCCCCCCCCCCCCeEEEEEeC-CCC--CeeecceeecCCCCeecceEEE-cccCCCCCCCCeEEEEEEEccCCCC
Q psy12095         16 VIQAEDLPALDMGGTSDPYVKVYLLP-DKK--KKFETKVHRKTLNPVFNETFVF-KGVPYADAMNKTLVFAIFDFDRFSK   91 (128)
Q Consensus        16 i~~a~~l~~~~~~~~~~p~~~~~~~~-~~~--~~~~t~~~~~~~~p~~~e~~~f-~~~~~~~~~~~~l~v~v~~~~~~~~   91 (128)
                      ..+|.+|.+++..++++||..+.-.. ++.  ...+|.+.+++++|.|.+...- ..++..+ ....+.+.+|+++..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~-~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKD-GNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccC-CCCceEEEEeccCCCCC
Confidence            44578888888899999998886542 222  3578999999999999963211 1122111 23678899999999999


Q ss_pred             CceeEEEEEecccccccccccceEecccc
Q psy12095         92 HDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        92 ~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      ++++|.+..++..+........|...++.
T Consensus       221 ~~~ig~~~tt~~~~~~~~~~~~~~~~~~~  249 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQEPGSPNQIMLINPK  249 (529)
T ss_pred             cCceeEecccHHHhcccCCcccccccChh
Confidence            99999999998888653333345554444

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.64  E-value=0.0013  Score=40.69  Aligned_cols=94  Identities=22%  Similarity=0.293  Sum_probs=63.4

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIF   84 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~   84 (128)
                      ...++|+|..+.++...  ....+.|+.+.+.-++..   ...|+....+..+.|+|...|+ +...++. ...|.|.+|
T Consensus         7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~   83 (173)
T cd08693           7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIY   83 (173)
T ss_pred             CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEE
Confidence            34789999999998762  234567777766432221   2345444445679999999998 7765543 356899999


Q ss_pred             EccCCC----------------CCceeEEEEEecccc
Q psy12095         85 DFDRFS----------------KHDQIGEVKVALCQI  105 (128)
Q Consensus        85 ~~~~~~----------------~~~~lG~~~~~l~~l  105 (128)
                      +.....                ....||.+.++|-+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             EecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            865322                245899999998874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.58  E-value=0.0024  Score=38.95  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFD   85 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~   85 (128)
                      ..++|+|..+.++....   ..+.|+.+.+.-++..   ...|..+.. .++.|+|...|+ +...++. ...|.|.+|+
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~   82 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEEE
Confidence            46889999999887542   4578888876433321   112333333 578999999998 7765543 3568999998


Q ss_pred             ccCCC----CCceeEEEEEecccc
Q psy12095         86 FDRFS----KHDQIGEVKVALCQI  105 (128)
Q Consensus        86 ~~~~~----~~~~lG~~~~~l~~l  105 (128)
                      .....    ....+|.+.++|-+.
T Consensus        83 ~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          83 VKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             EecccCCCCceEEEEEEEEEEECC
Confidence            66421    224699999998874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.54  E-value=0.0017  Score=44.34  Aligned_cols=102  Identities=18%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCC-----CCCCCCeEEEEEEEc
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY-----ADAMNKTLVFAIFDF   86 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~-----~~~~~~~l~v~v~~~   86 (128)
                      +.+.|.+|++.+...   .....+...+   ......|..+..+-.|.|+....+. +..     -...+..|++.+|..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~---ng~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~   74 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKF---NGESLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAV   74 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEe---CCceeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEe
Confidence            568899999987652   2234555555   3455668888888889999877776 221     122347799999998


Q ss_pred             c-CCCCCceeEEEEEecccc---ccc--ccccceEecccc
Q psy12095         87 D-RFSKHDQIGEVKVALCQI---DLA--QTIEEWRELQSV  120 (128)
Q Consensus        87 ~-~~~~~~~lG~~~~~l~~l---~~~--~~~~~w~~L~~~  120 (128)
                      + ..+..+.+|.+.++|...   ..+  .....||.|..-
T Consensus        75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~  114 (340)
T PF12416_consen   75 DGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS  114 (340)
T ss_pred             cCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence            8 567778999999999988   554  445689999776

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.34  E-value=0.0051  Score=37.36  Aligned_cols=95  Identities=21%  Similarity=0.260  Sum_probs=61.6

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCC-CCCeEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADA-MNKTLVFAIF   84 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~   84 (128)
                      ...++|++....+..... ....+.|+.+.+.-++.   ....|.....+.++.|+|...|+ +...++ ....|.+.+|
T Consensus         7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~   84 (156)
T cd08380           7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY   84 (156)
T ss_pred             CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence            346778888877765511 23456777776643332   12233333334678999999998 555443 3466899999


Q ss_pred             EccCCC--CCceeEEEEEecccc
Q psy12095         85 DFDRFS--KHDQIGEVKVALCQI  105 (128)
Q Consensus        85 ~~~~~~--~~~~lG~~~~~l~~l  105 (128)
                      +.....  .+..+|.+.++|-+.
T Consensus        85 ~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          85 AVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             EEecCCCCcceEEEEEeEEeEcc
Confidence            877543  457899999998875

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.26  E-value=0.0031  Score=38.49  Aligned_cols=76  Identities=22%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             CCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEEccCCCCCceeEEEEEeccc
Q psy12095         29 GTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFDFDRFSKHDQIGEVKVALCQ  104 (128)
Q Consensus        29 ~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~~~~~~~~~~lG~~~~~l~~  104 (128)
                      ..++.|+.+.+.-++..   ...|.....+..+.|||...|+ +...++. ...|.|++|+....++...+|.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            35678888877433321   2245555556678899999998 7766643 35699999998765566799999999877


Q ss_pred             c
Q psy12095        105 I  105 (128)
Q Consensus       105 l  105 (128)
                      .
T Consensus       107 ~  107 (159)
T cd08397         107 K  107 (159)
T ss_pred             C
Confidence            5

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.11  E-value=0.01  Score=36.72  Aligned_cols=96  Identities=21%  Similarity=0.271  Sum_probs=63.7

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceee----cCCCCeecceEEEcccCCCCC-CCCeEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHR----KTLNPVFNETFVFKGVPYADA-MNKTLV   80 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~----~~~~p~~~e~~~f~~~~~~~~-~~~~l~   80 (128)
                      ...+.|+|..+++++..-.....+.|+.+.+.-++..   ...|+...    ....+.|+|...|+ +...++ ....|.
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~   85 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV   85 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence            4578899999999986643345678888876433221   12233211    12246799999998 655443 346699


Q ss_pred             EEEEEccCCC---------CCceeEEEEEecccc
Q psy12095         81 FAIFDFDRFS---------KHDQIGEVKVALCQI  105 (128)
Q Consensus        81 v~v~~~~~~~---------~~~~lG~~~~~l~~l  105 (128)
                      +.+|+.....         .+..+|.+.++|-+.
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            9999876543         356899999998875

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.89  E-value=0.045  Score=34.12  Aligned_cols=95  Identities=14%  Similarity=0.099  Sum_probs=59.0

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFD   85 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~   85 (128)
                      +..++|+|..+..+.. +.......|+.+.+.-++..  ..+|.....+.++.|+|...|+ +...++. ...|.+.||+
T Consensus         9 ~~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~   86 (178)
T cd08399           9 DRKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence            4478888888764332 22333456777655322211  2235555555679999999998 7766643 3568999998


Q ss_pred             ccCCC----------------CCceeEEEEEecccc
Q psy12095         86 FDRFS----------------KHDQIGEVKVALCQI  105 (128)
Q Consensus        86 ~~~~~----------------~~~~lG~~~~~l~~l  105 (128)
                      ...-.                .+..||.+.+.|-+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             EecCcccccccccccccccccccceEEEEEEEEEcC
Confidence            53211                245789899988774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.74  E-value=0.035  Score=35.03  Aligned_cols=57  Identities=18%  Similarity=0.218  Sum_probs=44.6

Q ss_pred             eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC----CCCceeEEEEEecc
Q psy12095         46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALC  103 (128)
Q Consensus        46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~----~~~~~lG~~~~~l~  103 (128)
                      ..+|.+...+.+|.|+|++-+. ++.+......|.+.+++....    .....+|-+.++|-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            5667777889999999999999 998888788899998775421    22357898888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=96.63  E-value=0.077  Score=33.36  Aligned_cols=57  Identities=19%  Similarity=0.226  Sum_probs=44.5

Q ss_pred             eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC-C-CceeEEEEEecc
Q psy12095         46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS-K-HDQIGEVKVALC  103 (128)
Q Consensus        46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~-~-~~~lG~~~~~l~  103 (128)
                      ..+|.+...+.+|.|+|++-+. ++.+......|.+.+++...-. + ...+|-+.++|-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            5677788889999999999999 9888877888988887754321 2 257998888874

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.44  E-value=0.084  Score=31.53  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=41.6

Q ss_pred             ecceeecC-CCCeecceEEEcccCCCCCC-CCeEEEEEEEccCCCCC----ceeEEEEEecccc
Q psy12095         48 ETKVHRKT-LNPVFNETFVFKGVPYADAM-NKTLVFAIFDFDRFSKH----DQIGEVKVALCQI  105 (128)
Q Consensus        48 ~t~~~~~~-~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~~~~~~~~----~~lG~~~~~l~~l  105 (128)
                      .|.....+ ..+.|+|...|. +...++. ...|.+++|........    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56666655 789999999998 7665543 45689999998775555    6999999998876

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.21  E-value=0.12  Score=30.78  Aligned_cols=108  Identities=22%  Similarity=0.257  Sum_probs=62.3

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccC-C----CCCCCCeEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVP-Y----ADAMNKTLVFA   82 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~-~----~~~~~~~l~v~   82 (128)
                      ...+.+.|.+..+++..    ....++.............|.... .+....|++.|.+.+-. .    .......+.+.
T Consensus         6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            34677888888877652    222333333211111123344333 45568999999887311 1    11334568888


Q ss_pred             EEEccCCCCCceeEEEEEeccccccc--ccccceEecccc
Q psy12095         83 IFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQSV  120 (128)
Q Consensus        83 v~~~~~~~~~~~lG~~~~~l~~l~~~--~~~~~w~~L~~~  120 (128)
                      |+....-++...+|.+.+.|+++...  .....-++|...
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~  121 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC  121 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC
Confidence            88874333336899999999998663  344455556554

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.11  E-value=0.15  Score=31.08  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=66.3

Q ss_pred             ecCCCEEEEEEEEecCCCCCCC--CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCC--------
Q psy12095          6 DFNANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAM--------   75 (128)
Q Consensus         6 ~~~~~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~--------   75 (128)
                      .+....|.+.|..++-....-.  .+..+..+.+.+. -+.++++|+.+..+.+|.|++.|.|. +......        
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~l   82 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTL   82 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEE-ecccccccccchhHh
Confidence            4566788899988764432211  1344555555543 24578999999999999999999998 6654311        


Q ss_pred             ---CCeEEEEEEEccCCCCCceeEEEEEecccc
Q psy12095         76 ---NKTLVFAIFDFDRFSKHDQIGEVKVALCQI  105 (128)
Q Consensus        76 ---~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l  105 (128)
                         ...|.+.+...+..+...++|.-.+.-...
T Consensus        83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~v  115 (156)
T PF15627_consen   83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKV  115 (156)
T ss_pred             hcCCCceEEEEEEecCCCceEeeeeceehHHHH
Confidence               145777777777666667888777775544

>KOG1452|consensus

Probab=95.98  E-value=0.062  Score=36.38  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             ecCCCEEEEEEEEecCCCCCC--CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095          6 DFNANSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI   83 (128)
Q Consensus         6 ~~~~~~l~v~i~~a~~l~~~~--~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v   83 (128)
                      -...|.|.+.++.+++|....  .+-..+.||.+..  +.....+|.+........|.|+|..+ +..    ...+.+-|
T Consensus        47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~vrs~~~~f~w~e~F~~D-vv~----~~vl~~lv  119 (442)
T KOG1452|consen   47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRVRSSGPGFAWAEDFKHD-VVN----IEVLHYLV  119 (442)
T ss_pred             ecccceEEEEEecccccccChhccCceeeeeeeeee--cccCccccccccCCCCccchhhceee-ccc----ceeeeEEE
Confidence            345678889999999997432  2445677888765  34445556666666678899999988 332    23567778


Q ss_pred             EEccCCCCCce
Q psy12095         84 FDFDRFSKHDQ   94 (128)
Q Consensus        84 ~~~~~~~~~~~   94 (128)
                      |+++.-.++++
T Consensus       120 ySW~pq~RHKL  130 (442)
T KOG1452|consen  120 YSWPPQRRHKL  130 (442)
T ss_pred             eecCchhhccc
Confidence            88776655554

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.83  E-value=0.061  Score=33.62  Aligned_cols=58  Identities=19%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC-C--CceeEEEEEeccc
Q psy12095         46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS-K--HDQIGEVKVALCQ  104 (128)
Q Consensus        46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~-~--~~~lG~~~~~l~~  104 (128)
                      ...|.+..++..|.|+|++-+. ++........|.+++++...-. +  ...+|-+.++|-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            3456666678899999999998 8877666778999998866422 1  1689999999977

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.92  E-value=0.33  Score=27.21  Aligned_cols=76  Identities=21%  Similarity=0.253  Sum_probs=47.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEEc
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFDF   86 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~~   86 (128)
                      .+.+.+...++..........+.|+.+.+.-++..   ...|.....+..+.|+|...|+ +...++. ...+.+.+|+.
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~   90 (100)
T smart00142       12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEV   90 (100)
T ss_pred             ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEe
Confidence            36666777766654432223478888877433321   2234444445568999999998 7665543 35688999985


Q ss_pred             c
Q psy12095         87 D   87 (128)
Q Consensus        87 ~   87 (128)
                      .
T Consensus        91 ~   91 (100)
T smart00142       91 K   91 (100)
T ss_pred             e
Confidence            4

Outlier of C2 family.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=94.50  E-value=0.26  Score=30.69  Aligned_cols=55  Identities=22%  Similarity=0.341  Sum_probs=41.1

Q ss_pred             cceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC-----CCCceeEEEEEeccc
Q psy12095         49 TKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF-----SKHDQIGEVKVALCQ  104 (128)
Q Consensus        49 t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~-----~~~~~lG~~~~~l~~  104 (128)
                      +.++..+..|.|++++-+. ++........|.+++++...-     .....+|-+.++|-.
T Consensus        56 ~sv~~~~k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          56 TSVVYYHKNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEcCCCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            4455555899999999998 776554567799999886532     335689999999875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=93.87  E-value=0.61  Score=29.19  Aligned_cols=57  Identities=21%  Similarity=0.263  Sum_probs=42.6

Q ss_pred             eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCC------CCceeEEEEEecc
Q psy12095         46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFS------KHDQIGEVKVALC  103 (128)
Q Consensus        46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~------~~~~lG~~~~~l~  103 (128)
                      ...|.+..++.+|.|.+++-.. ++..-.....|.++.++.+--.      ....+|-+.++|-
T Consensus        55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~  117 (179)
T cd08696          55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL  117 (179)
T ss_pred             eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence            5667788889999999999888 8776656677888888744321      1346898888874

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=91.16  E-value=2.6  Score=26.60  Aligned_cols=58  Identities=16%  Similarity=0.240  Sum_probs=43.4

Q ss_pred             eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC--C-------CCCceeEEEEEeccc
Q psy12095         46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR--F-------SKHDQIGEVKVALCQ  104 (128)
Q Consensus        46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~--~-------~~~~~lG~~~~~l~~  104 (128)
                      ...|.+..++.+|.|.+++-+. ++........|.++.++.+-  .       .....+|-+.++|-.
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            5567788888999999999888 87766566779999988651  1       113468988888754

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG1327|consensus

Probab=90.38  E-value=1.3  Score=32.33  Aligned_cols=59  Identities=31%  Similarity=0.521  Sum_probs=44.1

Q ss_pred             eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC----CCCCceeEEEEEecccccc
Q psy12095         46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR----FSKHDQIGEVKVALCQIDL  107 (128)
Q Consensus        46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~----~~~~~~lG~~~~~l~~l~~  107 (128)
                      ..+|..+....+|.|.+.|... ...+.  ...+++.+++.+.    ....+|+|.+.+.+..+..
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~-y~fE~--vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs  104 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQ-YRFEK--VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS  104 (529)
T ss_pred             ccceeeeeccCCccceeeechh-heeee--eeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence            3478889999999999988876 44333  2578888888664    4566799999998877643

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=90.30  E-value=2  Score=23.88  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=40.8

Q ss_pred             CCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccc
Q psy12095         31 SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI  105 (128)
Q Consensus        31 ~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l  105 (128)
                      .+..+.+.++  ......|.-. ...+..|++.|.++ +.    ....+.|.||-++-   ....|-..+.|++.
T Consensus         9 ~eV~avLklD--n~~VgqT~Wk-~~s~q~WDQ~Fti~-Ld----RsRELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           9 SEVSAVLKLD--NTVVGQTQWK-PKSNQAWDQSFTLE-LE----RSRELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cceEEEEEEc--CeEEeecccc-ccccccccceeEEE-ee----cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            4666777763  2222223322 22578999999988 43    24679999988763   34667777888774

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=88.06  E-value=3.3  Score=25.60  Aligned_cols=83  Identities=18%  Similarity=0.266  Sum_probs=53.7

Q ss_pred             CCCCeEEEEEeCCCCCeeecceee--cCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q psy12095         30 TSDPYVKVYLLPDKKKKFETKVHR--KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL  107 (128)
Q Consensus        30 ~~~p~~~~~~~~~~~~~~~t~~~~--~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~  107 (128)
                      ...-|+++.+  ++....+|....  ....-.|++.|.+. +..   ....|.+.||.... ..+..|+.+.+++-....
T Consensus        36 ~~~~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~-i~~---~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   36 KTRYYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQ-ITR---WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             heeEEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEE-Eec---CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence            3466777776  344455555544  34456778998887 432   13579999999887 667899999999776533


Q ss_pred             ccc----ccceEeccc
Q psy12095        108 AQT----IEEWRELQS  119 (128)
Q Consensus       108 ~~~----~~~w~~L~~  119 (128)
                      ...    ...|+....
T Consensus       109 ~~~~~~~~~~~~eFsS  124 (168)
T PF15625_consen  109 HTSTDNVPLEEYEFSS  124 (168)
T ss_pred             cccccCCceEeEEEcC
Confidence            311    345665544

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=85.43  E-value=10  Score=26.54  Aligned_cols=106  Identities=15%  Similarity=0.120  Sum_probs=60.6

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      ..|.|.|.+-.++.     .....|+.+..   +.....|..+..+..-..+-..... +...+ .+.+|++.++-....
T Consensus        58 F~LLVeI~EI~~i~-----k~khiyIef~~---Gr~d~TT~~IpTsKK~RI~IqqRV~-IkIRQ-cDnTLkI~lfKKkLv  127 (508)
T PTZ00447         58 FYLLVKINEIFNIN-----KYKHIYIIFST---DKYDFTTDEIPTNKKNRIHIDQRVD-IKIRQ-CDETLRVDLFTTKLT  127 (508)
T ss_pred             eeEEEEehhhhccc-----cceeEEEEEEc---CceEEEccccccCcCceEEEeeeee-eeeee-cCceEEEEEEecccc
Confidence            34556666544432     23356666655   3444555555544444444222233 33333 347899999987765


Q ss_pred             CCCceeEEEEEeccc--ccccccccceEecccccCCCCc
Q psy12095         90 SKHDQIGEVKVALCQ--IDLAQTIEEWRELQSVEGEGGQ  126 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~--l~~~~~~~~w~~L~~~~~~~~~  126 (128)
                      + ...+|.+.+.+..  +...-+.+.||.+...+++.+.
T Consensus       128 k-k~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cR  165 (508)
T PTZ00447        128 K-KVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICK  165 (508)
T ss_pred             c-eeEEEEEEecccHHHHhccCCccceEEEecCCceeee
Confidence            4 4679998888764  2333345689999776665544

>KOG0906|consensus

Probab=82.86  E-value=14  Score=28.29  Aligned_cols=75  Identities=25%  Similarity=0.326  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEEEccCCCCCceeEEEEEeccc
Q psy12095         29 GTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIFDFDRFSKHDQIGEVKVALCQ  104 (128)
Q Consensus        29 ~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~~~~~~~~~~~lG~~~~~l~~  104 (128)
                      .+++.|+...+...+..   -.+|+.+.....-.|||-..+. +...++. ...+.|.+|+....+.-.++|...+.+..
T Consensus        45 ~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~  123 (843)
T KOG0906|consen   45 TSSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG  123 (843)
T ss_pred             cchhhhheeeeeccCCcccCCccccccccCCccchhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence            34567777666444332   1234444433344599988887 6655543 35699999998877777799998888764

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=80.08  E-value=11  Score=23.18  Aligned_cols=85  Identities=16%  Similarity=0.209  Sum_probs=53.1

Q ss_pred             EEEEEecCCCCCCCCCCCCCeEEEEEeCC-------CCC-eeecceeec-----CCCCeecceEEEcccCCCCC-CCCeE
Q psy12095         14 VTVIQAEDLPALDMGGTSDPYVKVYLLPD-------KKK-KFETKVHRK-----TLNPVFNETFVFKGVPYADA-MNKTL   79 (128)
Q Consensus        14 v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-------~~~-~~~t~~~~~-----~~~p~~~e~~~f~~~~~~~~-~~~~l   79 (128)
                      =.|..|.+..      ..+.||+..+.-.       +.. ...|.+...     +..-.|+..|.+. +..... ....|
T Consensus         6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~-~~~~~~~gwP~L   78 (168)
T PF07162_consen    6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLH-FKSTNPQGWPQL   78 (168)
T ss_pred             EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEE-EEeCCCCCCceE
Confidence            3566777553      2367888877421       122 334444432     2346788777665 333332 24679


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccc
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQI  105 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l  105 (128)
                      .++||..+..+++...|-..+.|...
T Consensus        79 ~l~V~~~D~~gr~~~~GYG~~~lP~~  104 (168)
T PF07162_consen   79 VLQVYSLDSWGRDRVEGYGFCHLPTQ  104 (168)
T ss_pred             EEEEEEEcccCCeEEeEEeEEEeCCC
Confidence            99999999999999999877766443

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		2e-45
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		8e-45
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		9e-45
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		3e-44
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		3e-44
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		2e-32
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		2e-30
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		2e-30
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		3e-24
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		5e-23
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		1e-17
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		2e-17
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		3e-17
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		2e-16
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		8e-16
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		1e-15
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		1e-15
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		2e-14
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-13
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		2e-13
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		4e-13
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		4e-13
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		8e-13
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		9e-13
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		1e-12
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		2e-12
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		3e-12
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		3e-12
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		9e-12
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		9e-12
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		8e-11
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		2e-10
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-10
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		3e-08
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		2e-07
2q3x_A	171	The Rim1alpha C2b Domain Length = 171		2e-06
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		8e-06
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		1e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		1e-05

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 96/121 (79%), Gaps = 1/121 (0%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 12  LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71
Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 122
            F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E 
Sbjct: 72  QFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 130
Query: 123 E 123
           E
Sbjct: 131 E 131

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score =  175 bits (443), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 35  LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 94
Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
            F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E
Sbjct: 95  QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score =  174 bits (442), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 10  LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 69
Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
            F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS E
Sbjct: 70  QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 127

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 27  LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 86
Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
            F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS
Sbjct: 87  QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFNE
Sbjct: 27  LDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 86
Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
            F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS
Sbjct: 87  QFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 85/121 (70%)
Query: 5   YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETF 64
           Y+F  ++L+V +++A++LPA D  GTSDP+VK+YLLPDKK K ETKV RK LNP +NETF
Sbjct: 21  YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF 80
Query: 65  VFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 124
           +F+G PY   + + L   + D+DRFS++D IGEV + L ++DL Q    W++L+      
Sbjct: 81  LFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSS 140
Query: 125 G 125
           G
Sbjct: 141 G 141

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L Y + ++ L V ++QA DLPA D  G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FNE
Sbjct: 13  LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
           TF F  VP A+   + L F+++DFDRFS+HD IG+V
Sbjct: 73  TFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 107

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 62
           L Y + ++ L V ++QA DLPA D  G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FNE
Sbjct: 14  LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 73
Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
           TF F  VP A+   + L F+++DFDRFS+HD IG+V
Sbjct: 74  TFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 108

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 61
           LEY+F   +  V + +A  LPA+D    TSDPY+K+ +LP+KK K +T+V RKTL+P F+
Sbjct: 15  LEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFD 74
Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
           ETF F G+PY       L F I  FDRFS+ D IGEV + L  I+L++
Sbjct: 75  ETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 4   EYDFNANSLSVTVIQAEDLPA-LDMGGT------SDPYVKVYLLPDKKKKFETKVHRKTL 56
           +YD   N L+V VI+A DLP  +   G+      S+PYVK+ LLPD+K   +T V RKT 
Sbjct: 20  QYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQ 79
Query: 57  NPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 116
            PVF E + F+ +P+ +A  +TL+  + DFD+FS+H  IG+V V LC++DL +    W+ 
Sbjct: 80  KPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKA 138
Query: 117 L 117
           L
Sbjct: 139 L 139

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVF 60
           L YD + ++L  T+I+A+ L  +D  G +DPYVK++LLP   K  K  TK  R T NPV+
Sbjct: 22  LLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVW 81
Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
           NET  + G+   D   KTL  ++ D D+F  ++ IGE + +L ++   Q
Sbjct: 82  NETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ 130

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVF 60
           L YD + ++L  T+I+A+ L  +D  G +DPYVK++LLP   K  K  TK  R T NPV+
Sbjct: 20  LLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVW 79
Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
           NET  + G+   D   KTL  ++ D D+F  ++ IGE + +L ++   Q
Sbjct: 80  NETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ 128

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFET 49
           ++L+ +++  +L + ++QA +L   D  G SDP+VKVYLLP + +           K  T
Sbjct: 9   IQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT 68
Query: 50  KVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
           K  +K+LNP +N+T ++K +     M KTL   ++D+DRFS +D +GEV + L       
Sbjct: 69  KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128
Query: 110 TIEEWRELQ 118
               W  L+
Sbjct: 129 NTPRWYPLK 137

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
           + L Y+ +ANS+ V +I+A +L A+D+GGTSDPYVKV+L+   K+  K +T   ++ LNP
Sbjct: 7   LSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNP 66
Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           +FNE+F F  +P       T++  + D D+ S++D IG  K+ L        ++ W+++
Sbjct: 67  IFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIG--KIYLSWKSGPGEVKHWKDM 122

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
           L Y      L V +I+   L A+D  G SDP+VK++L PD  KK K +T++ +KTLNP F
Sbjct: 30  LMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEF 89
Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL------------CQIDLA 108
           NE F F  + ++D   K+L  +++D+D    +D IG  ++ +            C  +  
Sbjct: 90  NEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD 148
Query: 109 QTIEEWRELQS 119
           + IE W +LQ+
Sbjct: 149 KKIERWHQLQN 159

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 15/131 (11%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
           L Y      L V +I+   L A+D  G SDP+VK++L PD  KK K +T++ +KTLNP F
Sbjct: 8   LMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEF 67
Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL------------CQIDLA 108
           NE F F  + ++D   K+L  +++D+D    +D IG  ++ +            C  +  
Sbjct: 68  NEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD 126
Query: 109 QTIEEWRELQS 119
           + IE W +LQ+
Sbjct: 127 KKIERWHQLQN 137

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 15/133 (11%)
Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNP 58
           + L Y      L V +I+   L A D  G SDP+VK++L PD  KK K +T++ +KTLNP
Sbjct: 28  VSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNP 87
Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL------------CQID 106
            FNE F F  + ++D   K+L  +++D+D    +D IG  ++ +            C  +
Sbjct: 88  EFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
Query: 107 LAQTIEEWRELQS 119
             + IE W +LQ+
Sbjct: 147 KDKKIERWHQLQN 159

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 9   ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVF 66
           A+ + VTV +A +L  +D  G SDPYVK+ L+PD +   K +T+  + TLNPV+NETFVF
Sbjct: 19  ADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVF 78
Query: 67  KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW-RELQSVEGE 123
              P    + + L   ++D+DR S++D +G +   + ++ L   ++ W + L   EGE
Sbjct: 79  NLKP--GDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL-LKAPVDGWYKLLNQEEGE 133

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGV 69
           L VTV  A++L  +D  G SDPYVK+ L+PD K   K +TK  R TLNP +NE+F FK  
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
           P     ++ L   I+D+DR +++D +G +   + ++        ++ L   EGE
Sbjct: 79  P--SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGE 130

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGV 69
           L VTV  A++L  +D  G SDPYVK+ L+PD K   K +TK  R TLNP +NE+F FK  
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
           P     ++ L   I+D+DR +++D +G +   + ++        ++ L   EGE
Sbjct: 78  P--SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGE 129

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGV 69
           L VTV  A++L   D  G SDPYVK+ L+PD K   K +TK  R TLNP +NE+F FK  
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
           P     ++ L   I+D+DR +++D  G +   + ++        ++ L   EGE
Sbjct: 80  P--SDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKLLNQEEGE 131

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVH--RKTLNP 58
           + + +    N L V V    +L A    G SDPYV++YLLPDK++    K H  +KTLNP
Sbjct: 15  LTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNP 73
Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQIDLAQTIEEWRE 116
           VF+++F F  V   +   +TL  A+ +   F   D+  +G+V VAL   +LA+   +W +
Sbjct: 74  VFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYD 132
Query: 117 LQSVEG 122
           L    G
Sbjct: 133 LTEDSG 138

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
           +KL +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K K  TK  +KTL P
Sbjct: 12  IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 71
Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQIDLAQTIEEWRE 116
            +N+TF++  V   +   + L   ++D  R  + +   +GE+ + L +  L      W +
Sbjct: 72  KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-ETALLDDEPHWYK 130
Query: 117 LQS 119
           LQ+
Sbjct: 131 LQT 133

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
           +KL +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K K  TK  +KTL P
Sbjct: 9   IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 68
Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVAL 102
            +N+TF++  V   +   + L   ++D  R  + +   +GE+ + L
Sbjct: 69  KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 114

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK--TLNP 58
           + L Y    N+L+V V++A  LP  D+ G SDPYVKV L   KK+  + K H K  T N 
Sbjct: 21  VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA 80
Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 98
           VFNE FVF  +P       ++ F + D +R S+++ IG +
Sbjct: 81  VFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRL 119

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
           L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ +  + KK +T + + TLNP +
Sbjct: 18  LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 77
Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 101
           NE+F F+ VP+       +V  + D+D+  K+D IG+V V 
Sbjct: 78  NESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 117

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
           L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ +  + KK +T + + TLNP +
Sbjct: 11  LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 70
Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 101
           NE+F F+ VP+       +V  + D+D+  K+D IG+V V 
Sbjct: 71  NESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 110

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 60
           L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ +  + KK +T + + TLNP +
Sbjct: 10  LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 69
Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 101
           NE+F F+ VP+       +V  + D+D+  K+D IG+V V 
Sbjct: 70  NESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 109

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNP 58
           +KL   +   +L + V+  +DL   D G   +PYVK YLLPD  K  K +TK+ RKT NP
Sbjct: 11  VKLSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNP 69
Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
            FNE  V+ G        + L  ++   +   ++  +G + + L   +L++   +W +L 
Sbjct: 70  TFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129
Query: 119 SV 120
           + 
Sbjct: 130 AA 131

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
           L+Y+    SL V V +   L   D     S+PYVK YLLPDK +  K +T + R T+NP+
Sbjct: 16  LKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPL 75
Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ- 118
           ++ET  ++ +P +    +TL F+++   RF ++  +GE ++ +    L + ++    L  
Sbjct: 76  YDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG 134
Query: 119 --SVEGEG 124
             S E EG
Sbjct: 135 KISAESEG 142

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYL-LPDKKKKF---ETKVHRKTLNPVFNETFVFK 67
           L V V+   DL   D+ G SDPYVK+ L + D+ ++    +TK  +KTLNP +NE F F+
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 68  GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
             P     N  L+F +FD +R ++ D +G+V V L  +
Sbjct: 83  VNP----SNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGV 69
           L V V  A++L  +D  G SDPYVK+ L+PD K   K +TK  + +LNP +NETF F+ +
Sbjct: 33  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-L 91
Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
             +D  ++ L   I+D+D  S++D +G +   + ++  A     ++ L   EGE
Sbjct: 92  KESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGE 144

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGV 69
           L V V  A++L  +D  G SDPYVK+ L+PD K   K +TK  + +LNP +NETF F+ +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ-L 232
Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
             +D  ++ L   I+D+D  S++D +G +   + ++  A     ++ L   EGE
Sbjct: 233 KESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGE 285

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPV 59
           LE + N+  + V VI    L   D+ G SDPYV+V L           +TK  +K+LNP 
Sbjct: 13  LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 102
           +NE  +F+  P        L+F +FD +R ++ D +G+V V L
Sbjct: 73  WNEEILFRVHP----QQHRLLFEVFDENRLTRDDFLGQVDVPL 111

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYL---LPDKKKKFETKVHRKTLNPVFNETFVFKG 68
           + V VI    L   D+ G SDPYV+V L   +       +TK  +K+LNP +NE  +F+ 
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 69  VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
           +P        ++F +FD +R ++ D +G+V V L  +
Sbjct: 70  LP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102

>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 10  NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVF 66
             L V VI+A  L        T  PYVKVYLL +     K +T++ RKTL+P++ ++ VF
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 67  KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
              P    +    V    D+ R       G  ++ L ++DL+  +  W +L
Sbjct: 90  DESPQGKVLQ---VIVWGDYGRXDHKCFXGVAQILLEELDLSSXVIGWYKL 137

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV--FNETFVFKGV 69
           L V VI+A +L A    G S+PY ++ +     + + T+  + TLNP   FN  F  K  
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWNFNCQFFIK-- 443
Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
              D     L   +FD D+FS  D +G  ++ + +I   Q
Sbjct: 444 ---DLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQ 480

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
          +S+TV+ A+ L A D  G+SDPYV V +   KK+   TK     LNPV+ E F F+    
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKR---TKTIYGNLNPVWEENFHFECHNS 75
Query: 72 ADAM 75
          +D +
Sbjct: 76 SDRI 79

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V V++A DL A D  G SDP+  + L  D+    +T    K LNP +N+ F F   P 
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTF---PI 68
Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
            D ++  L   +FD D     D +G+V + L  I   Q
Sbjct: 69  KD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-64
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	7e-63
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-62
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	4e-60
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-60
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	6e-59
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	8e-58
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-57
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-57
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-57
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-56
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-56
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-36
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-55
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-55
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-53
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-53
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-36
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-52
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	5e-52
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-49
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-48
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	9e-46
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-45
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-44
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-44
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-42
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-42
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	5e-42
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	9e-39
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-36
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-35
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-33
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-28
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-26
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-26
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-24
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	2e-16
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	3e-16
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	6e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	7e-12
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	7e-10
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	4e-09
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	7e-05

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  191 bits (486), Expect = 3e-64
 Identities = 59/125 (47%), Positives = 86/125 (68%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
             + Y+F  ++L+V +++A++LPA D  GTSDP+VK+YLLPDKK K ETKV RK LNP +
Sbjct: 17  FSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHW 76

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
           NETF+F+G PY   + + L   + D+DRFS++D IGEV + L ++DL Q    W++L+  
Sbjct: 77  NETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136

Query: 121 EGEGG 125
               G
Sbjct: 137 GPSSG 141

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  188 bits (478), Expect = 7e-63
 Identities = 84/121 (69%), Positives = 95/121 (78%), Gaps = 1/121 (0%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
             L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVF
Sbjct: 33  YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF 92

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
           NE F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS 
Sbjct: 93  NEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

Query: 121 E 121
           E
Sbjct: 152 E 152

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  187 bits (476), Expect = 1e-62
 Identities = 83/119 (69%), Positives = 94/119 (78%), Gaps = 1/119 (0%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
             L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVF
Sbjct: 25  YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF 84

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
           NE F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS
Sbjct: 85  NEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  180 bits (459), Expect = 4e-60
 Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 2/121 (1%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV 59
             LEY+F   +  V + +A  LPA+D    TSDPY+K+ +LP+KK K +T+V RKTL+P 
Sbjct: 13  FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA 72

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQ 118
           F+ETF F G+PY       L F I  FDRFS+ D IGEV + L  I+L++  +   RE+ 
Sbjct: 73  FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132

Query: 119 S 119
           S
Sbjct: 133 S 133

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  180 bits (459), Expect = 4e-60
 Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
             L YD + ++L  T+I+A+ L  +D  G +DPYVK++LLP   K  K  TK  R T NP
Sbjct: 20  FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNP 79

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           V+NET  + G+   D   KTL  ++ D D+F  ++ IGE + +L ++   Q       L+
Sbjct: 80  VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139

Query: 119 SV 120
            V
Sbjct: 140 RV 141

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  177 bits (452), Expect = 6e-59
 Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 8/125 (6%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPAL-------DMGGTSDPYVKVYLLPDKKKKFETKVHR 53
              +YD   N L+V VI+A DLP              S+PYVK+ LLPD+K   +T V R
Sbjct: 17  FSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR 76

Query: 54  KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 113
           KT  PVF E + F+ +P+ +A  +TL+  + DFD+FS+H  IG+V V LC++DL +    
Sbjct: 77  KTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHW 135

Query: 114 WRELQ 118
           W+ L 
Sbjct: 136 WKALI 140

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  174 bits (443), Expect = 8e-58
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPV 59
             L+YD     L VT ++A      +  G  D YV+  +       + +T + ++ L+  
Sbjct: 17  YCLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT 73

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
           + E  V   +   +    TL   +   DRFS+H   GE+++ L    +     +W EL++
Sbjct: 74  WEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132

Query: 120 VEGEGG 125
                G
Sbjct: 133 SGPSSG 138

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  174 bits (444), Expect = 1e-57
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLN 57
             L+Y+    SL V V +   L   D     S+PYVK YLLPDK +  K +T + R T+N
Sbjct: 14  FSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVN 73

Query: 58  PVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           P+++ET  ++ +P +    +TL F+++   RF ++  +GE ++ +    L + ++    L
Sbjct: 74  PLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132

Query: 118 Q 118
            
Sbjct: 133 H 133

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  173 bits (441), Expect = 2e-57
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
           KL   +   +L + V+  +DL   D G   +PYVK YLLPD  K  K +TK+ RKT NP 
Sbjct: 12  KLSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPT 70

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
           FNE  V+ G        + L  ++   +   ++  +G + + L   +L++   +W +L +
Sbjct: 71  FNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  173 bits (441), Expect = 2e-57
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 13/132 (9%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFET 49
           +++ YD    +L + ++QA +L   D  G SDP+VKVYLLP + +           K  T
Sbjct: 11  LQINYDLG--NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT 68

Query: 50  KVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
           K  +K+LNP +N+T ++K +     M KTL   ++D+DRFS +D +GEV + L       
Sbjct: 69  KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128

Query: 110 TIEEWRELQSVE 121
               W  L+   
Sbjct: 129 NTPRWYPLKEQT 140

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  171 bits (436), Expect = 1e-56
 Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 5/123 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
           +KL +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K K  TK  +KTL P
Sbjct: 12  IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 71

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRE 116
            +N+TF++  V   +   + L   ++D  R  +   + +GE+ + L    L      W +
Sbjct: 72  KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYK 130

Query: 117 LQS 119
           LQ+
Sbjct: 131 LQT 133

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  174 bits (443), Expect = 6e-56
 Identities = 85/123 (69%), Positives = 96/123 (78%), Gaps = 1/123 (0%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
             L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVF
Sbjct: 10  YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF 69

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
           NE F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS 
Sbjct: 70  NEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 128

Query: 121 EGE 123
           E E
Sbjct: 129 EKE 131

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  124 bits (314), Expect = 2e-36
 Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNP 58
             L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ + K  KK +T + + TLNP
Sbjct: 141 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP 200

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
            +NE+F F+ VP+       +V  + D+D+  K+D IG+V V             W ++
Sbjct: 201 YYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL--RHWSDM 256

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  168 bits (428), Expect = 1e-55
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
           +KL +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K K  TK  +KTL P
Sbjct: 9   IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 68

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRE 116
            +N+TF++  V   +   + L   ++D  R  +   + +GE+ + L    L      W +
Sbjct: 69  KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYK 127

Query: 117 LQ 118
           LQ
Sbjct: 128 LQ 129

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  168 bits (427), Expect = 3e-55
 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 6/126 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
           + + +    N L V V    +L A    G SDPYV++YLLPDK++  + +T V +KTLNP
Sbjct: 15  LTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNP 73

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQIDLAQTIEEWRE 116
           VF+++F F  V   +   +TL  A+ +   F   D+  +G+V VAL   +LA+   +W +
Sbjct: 74  VFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYD 132

Query: 117 LQSVEG 122
           L    G
Sbjct: 133 LTEDSG 138

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  164 bits (417), Expect = 1e-53
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNP 58
            L+YD      ++ +IQ  +L AL         ++V +LP  +     F T+    +   
Sbjct: 35  ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTL 94

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-EEWREL 117
           VFNE F    + Y     KTL   +   DR    + +G  +++L ++  +      W  L
Sbjct: 95  VFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153

Query: 118 QS 119
            S
Sbjct: 154 LS 155

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  168 bits (428), Expect = 2e-53
 Identities = 63/125 (50%), Positives = 83/125 (66%), Gaps = 3/125 (2%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
             L Y + ++ L V ++QA DLPA D  G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+F
Sbjct: 11  FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIF 70

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV--ALCQIDLAQTIEEWRELQ 118
           NETF F  VP A+   + L F+++DFDRFS+HD IG+V +   L   +       WR++ 
Sbjct: 71  NETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 129

Query: 119 SVEGE 123
               E
Sbjct: 130 EGGSE 134

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  124 bits (313), Expect = 3e-36
 Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 60
           L Y   A  L+VT+I+A +L A+D+ G SDPYVK  L+ + +  KK +T + + TLNP +
Sbjct: 145 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           NE  VF  V      N  L  A+ D+D    ++ IG  +V     D     E W E+
Sbjct: 205 NEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEM 259

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  160 bits (406), Expect = 5e-52
 Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 5/122 (4%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
            ++   +   L V V  A++L  +D  G SDPYVK+ L+PD K   K +TK  + +LNP 
Sbjct: 23  YIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE 82

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
           +NETF F+ +  +D  ++ L   I+D+D  S++D +G +   + ++  A   + W +L S
Sbjct: 83  WNETFRFQ-LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLS 139

Query: 120 VE 121
            E
Sbjct: 140 QE 141

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  154 bits (391), Expect = 2e-49
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 8/124 (6%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
           ++  +     L V VI+A  L        T  PYVKVYLL +     K +T++ RKTL+P
Sbjct: 22  QIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDP 81

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           ++ ++ VF   P      K L   ++ D+ R      +G  ++ L ++DL+  +  W +L
Sbjct: 82  LYQQSLVFDESP----QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

Query: 118 QSVE 121
               
Sbjct: 138 FPPS 141

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  151 bits (383), Expect = 2e-48
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 59
           +L  D     L + +I+ + L +    GT DPYVK+ L+P+  +    +T+      +P 
Sbjct: 19  RLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPA 77

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQ-IGEVKVALCQI-DLAQTIEEWREL 117
           F+E F F  V   D   K L+  +++    S+    IG +   +  +    + I  W  L
Sbjct: 78  FHEHFFFP-VQEED-DQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135

Query: 118 QSVEGEG 124
              E  G
Sbjct: 136 LG-EHLG 141

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  145 bits (367), Expect = 9e-46
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
           + L Y      L V +I+   L A+D  G SDP+VK++L PD  K  K +T++ +KTLNP
Sbjct: 28  VSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNP 87

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
            FNE F +  + ++D   K+L  +++D+D    +D IG  ++ +         + W E  
Sbjct: 88  EFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL--KHWYECL 144

Query: 119 SVEGE 123
             + +
Sbjct: 145 KNKDK 149

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  142 bits (360), Expect = 4e-45
 Identities = 42/119 (35%), Positives = 74/119 (62%), Gaps = 5/119 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
           + L Y+ +ANS+ V +I+A +L A+D+GGTSDPYVKV+L+   K+  K +T   ++ LNP
Sbjct: 7   LSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNP 66

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           +FNE+F F  +P       T++  + D D+ S++D IG++ ++          + W+++
Sbjct: 67  IFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEV--KHWKDM 122

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  141 bits (358), Expect = 1e-44
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 7/118 (5%)

Query: 3   LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPV 59
           LE + N+  + V VI    L   D+ G SDPYV+V L           +TK  +K+LNP 
Sbjct: 13  LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           +NE  +F+  P        L+F +FD +R ++ D +G+V V L  +       E    
Sbjct: 73  WNEEILFRVHP----QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYT 126

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  140 bits (355), Expect = 3e-44
 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
           + L Y    N+L+V V++A  LP  D+ G SDPYVKV L   KK+  K +T V + T N 
Sbjct: 21  VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA 80

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           VFNE FVF  +P       ++ F + D +R S+++ IG + +             W+E+ 
Sbjct: 81  VFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG--GHWKEIC 137

Query: 119 S 119
            
Sbjct: 138 D 138

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  135 bits (342), Expect = 2e-42
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 8   NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 67
           ++  L V V  A ++P    G   DP V V    +KKK   TK     LNPV+NE   F 
Sbjct: 5   SSGMLRVIVESASNIPKTKFG-KPDPIVSVIFKDEKKK---TKKVDNELNPVWNEILEFD 60

Query: 68  GVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQ 126
                   + +L   + DF+   ++  IG   VAL  +   Q+     +L S+  E GQ
Sbjct: 61  LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  136 bits (344), Expect = 3e-42
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 5   YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP---DKKKKFETKVHRKTLNPVFN 61
           ++ +   + V VI    L   D+ G SDPYV+V L           +TK  +K+LNP +N
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62

Query: 62  ETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
           E  +F+ +P        ++F +FD +R ++ D +G+V V L  +       E    
Sbjct: 63  EEILFRVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYT 114

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  135 bits (341), Expect = 5e-42
 Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNP 58
             L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ + K  KK +T + + TLNP
Sbjct: 16  FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP 75

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 117
            +NE+F F+ VP+       +V  + D+D+  K+D IG+V V             W ++
Sbjct: 76  YYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAEL--RHWSDM 131

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  125 bits (317), Expect = 9e-39
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 8   NANSLSVTVIQAEDL---PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETF 64
           +++  +V V++A  +      DM  T DPYV++++      +  T+     +NPV+NETF
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 65  VFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 121
            F            L   + D + +   + +G     +  + + +  E       V 
Sbjct: 61  EF---ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 113

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  120 bits (302), Expect = 2e-36
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V ++ A+ L   D     DPYV++      +K            P +NETF+F  V  
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFT-VSE 68

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WRELQSVEGEGGQL 127
                  L   IFD D  ++ D +GE  + L  + +  +I      +   E   G++
Sbjct: 69  G---TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEI 122

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  116 bits (293), Expect = 5e-35
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V V++A DL A D  G SDP+  + L  D+ +   T    K LNP +N+ F F     
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQ---THTVYKNLNPEWNKVFTFPIKD- 70

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 124
              ++  L   +FD D     D +G+V + L  I   Q       L++ + E 
Sbjct: 71  ---IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ 118

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  112 bits (283), Expect = 2e-33
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           + +TV+ A++L   D     DP+ K+ +    +    T   + TL+P +N+ +       
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH-STDTVKNTLDPKWNQHYDLYVGK- 64

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQ---IGEVKVALCQI-DLAQTIEEWRELQ 118
                 ++  ++++  +  K      +G V++    I  L  T  +  +L 
Sbjct: 65  ----TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLC 111

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  100 bits (251), Expect = 3e-28
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L +TVI A+            PYV+V +    KK   T+    T +P + +       P 
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKK---TEKCNNTNSPKWKQPLTVIVTP- 93

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI---DLAQTIEEWRELQ 118
                  L F ++          +G   + + +    +  +  E    LQ
Sbjct: 94  ----VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 139

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score =  102 bits (254), Expect = 1e-26
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 12  LSVTVIQAEDL---PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKG 68
            +V V++A  +      DM  T DPYV++++      +  T+     +NPV+NETF F  
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-- 77

Query: 69  VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 114
                     L   + D +     + +G     +  + + +  E  
Sbjct: 78  -ILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVP 121

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 95.3 bits (237), Expect = 2e-26
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 20/124 (16%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           +S+TV+ A+ L A D  G+SDPYV V +    K K  TK     LNPV+ E F F+    
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHNS 75

Query: 72  ADAMNKTLVFAIFDFD-----------RFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
           +D     +   + D D           +    D +G+  + +    L+  ++ W  L   
Sbjct: 76  SD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV--RTLSGEMDVWYNLDKR 129

Query: 121 EGEG 124
             + 
Sbjct: 130 TDKS 133

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 94.7 bits (235), Expect = 4e-26
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 11  SLSVTVIQAEDLPALDMGG----------TSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
            L V + +A  L                   DPY+ V +  D+ +  +T   +KT  P +
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQTSTKQKTNKPTY 87

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI----DLAQTIEEWRE 116
           NE F    V         L  A+F          +    +   ++      + T E W +
Sbjct: 88  NEEFCAN-VTDGG----HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVD 142

Query: 117 LQ 118
           L+
Sbjct: 143 LE 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 89.9 bits (223), Expect = 2e-24
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 21/126 (16%)

Query: 11  SLSVTVIQAEDLPALDM-----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV 59
            L + + +A  L                    DPY+ + +  D  +  +T   +KT +P 
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPA 64

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI--DLAQTIEEWREL 117
           +++ FV   V         +  A+F        D +    +   ++  + ++  E+W +L
Sbjct: 65  WHDEFVTD-VCNGR----KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119

Query: 118 QSVEGE 123
           +  EG+
Sbjct: 120 E-PEGK 124

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 73.1 bits (178), Expect = 2e-16
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 10  NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL---NPVFNETFVF 66
           N L + +I+A +LP          Y ++ L  D      T    ++       + E F F
Sbjct: 11  NVLKLWIIEARELPP-----KKRYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63

Query: 67  KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQ 126
             +P   A+   L        +  K   +G V V +  +      E+W  +    G GG 
Sbjct: 64  NNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGS 123

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 72.6 bits (177), Expect = 3e-16
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 13  SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYA 72
            V+  +AE L        +D Y+KV+      ++F T V     NP + +   F+ V   
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFF---GGQEFRTGVVWNNNNPRWTDKMDFENVL-- 450

Query: 73  DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-AQTIEEWRELQ 118
            +    L   ++D D     D +G      C     +   E   EL 
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGS-----CDRSPHSGFHEVTCELN 492

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 57.7 bits (139), Expect = 6e-12
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV-FNETFVFKGV 69
           +L V +    +L      G +D   KV     + + F ++V     +   F+ETF +  V
Sbjct: 22  ALIVHLKTVSELR-----GRADRIAKVTF---RGQSFYSRVLENCEDVADFDETFRWP-V 72

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
             +   N+ L   IF++ +   +  IG  ++ L ++
Sbjct: 73  ASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 57.3 bits (138), Expect = 7e-12
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V V +A+   A +     + YV + +     K   T +  +   P + + F+F+    
Sbjct: 7   LCVGVKKAKFDGAQE---KFNTYVTLKV--QNVKS--TTIAVRGSQPSWEQDFMFE---- 55

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS 119
            + ++  L   +++         +G V + L  I  +  +   EW  L S
Sbjct: 56  INRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 104

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 52.7 bits (126), Expect = 7e-10
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 10  NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGV 69
           + L V V +A+   A +     + YV + +     +   T +  +   P + + F+F+  
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKV--QNVES--TTIAVRGSQPSWEQDFMFE-- 64

Query: 70  PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS 119
              + ++  L   +++         +G V + L  I  +  +   EW  L S
Sbjct: 65  --INRLDLGLTVEVWN-KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 113

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 8   NANSLSVTVIQAEDLPALDMGGTS--DPYVKVYLL---PDKKKKFETKVHRKTLNPVFNE 62
               L V +I  + LP ++    S  DP V V +     D   +    +     NP ++ 
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 554

Query: 63  TFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
            F F+      A+   + F + D+D  SK+D IG+  +    +
Sbjct: 555 EFEFEVTVPDLAL---VRFMVEDYDSSSKNDFIGQSTIPWNSL 594

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Length = 885

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 9   ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL---PDKKKKFETK-VHRKTLNPVFNET- 63
           AN+L V VI  + L           YV+V +     D ++K+ T+     + NPV++E  
Sbjct: 724 ANALRVKVISGQFLS----DRKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEP 779

Query: 64  FVFKGVPYADAMNKTLVFAIFDFDR 88
           F F  V        +L  A F+   
Sbjct: 780 FDFPKVVLPTLA--SLRIAAFEEGG 802

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.96
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.96
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.96
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.96
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.95
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.95
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.95
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.95
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.95
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.95
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.95
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.95
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.94
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.94
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.94
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.94
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.94
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.93
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.93
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.93
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.93
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.92
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.92
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.9
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.9
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.9
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.9
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.9
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.89
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.89
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.89
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.88
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.88
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.87
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.87
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.86
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.83
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.79
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.78
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.76
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.74
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.73
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.73
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.72
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.7
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.6
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.48
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.47
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.47
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.17
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.12
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	96.8
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	96.04
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	94.79
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	94.23
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	93.01
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	90.31

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=145.88  Aligned_cols=124  Identities=47%  Similarity=0.909  Sum_probs=109.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      +++.|.+..+.|+|+|++|++|+..+..+.+|||+++.+.+++....+|+++..+.+|.|+|+|.|..++.+++....|.
T Consensus        17 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~   96 (141)
T 2d8k_A           17 FSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILY   96 (141)
T ss_dssp             EEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEE
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEE
Confidence            47899999999999999999999988888999999999987666788999999999999999999983333333457899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccccCCC
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  124 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~  124 (128)
                      |+|||++.++++++||++.++|.++..+.....|++|.+.+...
T Consensus        97 i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~s  140 (141)
T 2d8k_A           97 LQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSS  140 (141)
T ss_dssp             EEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCCCC
T ss_pred             EEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCCCC
Confidence            99999999999999999999999998888888999999887654

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.96  E-value=2.1e-28  Score=145.66  Aligned_cols=119  Identities=70%  Similarity=1.136  Sum_probs=107.9

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+.+....+|+++.++.+|.|+|+|.|. +...++....|.
T Consensus        25 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~  103 (143)
T 3f04_A           25 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLV  103 (143)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEEC-CCHHHHTTCEEE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEe-ecHhhcCCCEEE
Confidence            4789999999999999999999998878899999999998777778899999999999999999998 765555557899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      |+|||++.++++++||++.++|.++..+....+|++|.++
T Consensus       104 i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  143 (143)
T 3f04_A          104 MAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  143 (143)
T ss_dssp             EEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBCC
T ss_pred             EEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcCC
Confidence            9999999999999999999999999888888999999864

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.96  E-value=4.1e-28  Score=145.83  Aligned_cols=119  Identities=70%  Similarity=1.136  Sum_probs=107.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|.+..+.|+|+|++|++|+..+..+.+|||+++.+.+++....+|++++++.+|.|+|+|.|. +...++....|.
T Consensus        33 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~  111 (152)
T 1rsy_A           33 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLV  111 (152)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-CCHHHHTTCEEE
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEe-ecHHHcCCCEEE
Confidence            4789999999999999999999998888899999999998766678899999999999999999998 765444457899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      |+|||++.++++++||++.++|.++..+...++|++|.+.
T Consensus       112 i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          112 MAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             EEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             EEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            9999999999999999999999999888888999999864

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.96  E-value=3.3e-28  Score=145.61  Aligned_cols=124  Identities=30%  Similarity=0.548  Sum_probs=106.6

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |+++|.+..+.|.|+|++|++|+..+ ..+.+|||+++.+.+.+.  .+.+|++++++.+|.|+|+|.|. +...++...
T Consensus        14 ~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~   92 (148)
T 3fdw_A           14 FSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE-IPESLLAQR   92 (148)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEE-CCSTTGGGC
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEE-eChhHhCce
Confidence            47899999999999999999999877 478899999999987654  37889999999999999999999 776665556


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCCCC
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG  125 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~  125 (128)
                      .|.|+|||++.++++++||++.++|.++..+....+|++|.++...++
T Consensus        93 ~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~~~  140 (148)
T 3fdw_A           93 TLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAES  140 (148)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-----
T ss_pred             EEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccccc
Confidence            899999999999999999999999999987777889999999876544

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=148.56  Aligned_cols=118  Identities=25%  Similarity=0.374  Sum_probs=103.6

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      |++.|.+..+.|+|.|++|++|++++..+.+|||+++.+.+...   .+++|++++++.+|.|||+|.|. ++..++...
T Consensus        34 ~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~-v~~~~l~~~  112 (155)
T 2z0u_A           34 IALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS-MSYPALHQK  112 (155)
T ss_dssp             EEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEE-CCHHHHHHC
T ss_pred             EEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEE-cCHHHhCcC
Confidence            57899999999999999999999998889999999999976332   37899999999999999999998 765544456


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEeccccc-ccccccceEeccc
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQID-LAQTIEEWRELQS  119 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~-~~~~~~~w~~L~~  119 (128)
                      .|.|+|||++.++++++||++.++|.++. .+....+||+|.+
T Consensus       113 ~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          113 TLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             EEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            89999999999999999999999999995 3567789999864

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.95  E-value=3.2e-27  Score=139.83  Aligned_cols=120  Identities=23%  Similarity=0.378  Sum_probs=105.0

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCC-CCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD-KKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~-~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      |++.|.+..+.|+|+|++|++   ++..+.+|||+++.+.+. +....+|++++++.+|.|+|+|.|. +...++....|
T Consensus        17 ~sl~y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~-v~~~~l~~~~L   92 (138)
T 1wfm_A           17 YCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP-LAEEELPTATL   92 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE-CCTTSSTTCEE
T ss_pred             EEEEEeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEE-ecHHHcCCCEE
Confidence            578999999999999999993   556788999999999764 3346789999999999999999999 87766666789


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCCC
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  124 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~  124 (128)
                      .|.|||++.++++++||++.++|.++..+....+|++|.+..+++
T Consensus        93 ~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~~~~  137 (138)
T 1wfm_A           93 TLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSS  137 (138)
T ss_dssp             EEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSCCC
T ss_pred             EEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCCcCC
Confidence            999999999999999999999999997777788999999876654

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.95  E-value=1.8e-27  Score=142.25  Aligned_cols=123  Identities=41%  Similarity=0.748  Sum_probs=105.5

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCC-CC------CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPAL-DM------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYAD   73 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~-~~------~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~   73 (128)
                      |++.|.+..+.|.|+|++|++|+.. +.      .+.+|||+++.+.++.....+|++++++.+|.|+|+|.|. +...+
T Consensus        17 ~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~   95 (147)
T 2enp_A           17 FSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFE-IPFLE   95 (147)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEEC-CCHHH
T ss_pred             EEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEE-eChHH
Confidence            5789999999999999999999974 32      3578999999998766678899999999999999999998 66444


Q ss_pred             CCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCCC
Q psy12095         74 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  124 (128)
Q Consensus        74 ~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~  124 (128)
                      +....|.|+|||++.++++++||++.++|.++..+.....|+.|.++....
T Consensus        96 l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  146 (147)
T 2enp_A           96 AQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSS  146 (147)
T ss_dssp             HHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCCCCC
T ss_pred             hccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCCCCC
Confidence            334589999999999999999999999999997776677899999876554

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.95  E-value=4e-27  Score=138.78  Aligned_cols=120  Identities=29%  Similarity=0.567  Sum_probs=102.6

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|+...+.|.|+|++|++|+. +..+.+|||+++.+.+++  ....+|++++++.+|.|+|+|.|..++..++....
T Consensus        11 ~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~   89 (134)
T 2b3r_A           11 VKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRE   89 (134)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCE
T ss_pred             EEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCE
Confidence            468899999999999999999997 667889999999997653  45789999999999999999999734433334578


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      |.|+|||++.++++++||++.++|.++..+....+|++|.+.+
T Consensus        90 L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  132 (134)
T 2b3r_A           90 LQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT  132 (134)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC--
T ss_pred             EEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCcc
Confidence            9999999999999999999999999998888888999998765

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.95  E-value=3.3e-27  Score=140.34  Aligned_cols=122  Identities=36%  Similarity=0.592  Sum_probs=105.0

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|.+..+.|.|+|++|++|+..+..+ +|||+++.+.+.+.  ...+|++++++.+|.|+|+|.|. +...++....
T Consensus        15 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~   92 (142)
T 2dmg_A           15 LTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS-VSLPEVQRRT   92 (142)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEEC-CCHHHHHHCE
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEE-ecHHHhCcCE
Confidence            47899999999999999999999988888 99999999976554  57899999999999999999999 7654443458


Q ss_pred             EEEEEEEccCCCC--CceeEEEEEecccccccccccceEecccccCCC
Q psy12095         79 LVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  124 (128)
Q Consensus        79 l~v~v~~~~~~~~--~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~  124 (128)
                      |.|+|||++.++.  +++||++.++|..+..+....+|++|.+.++..
T Consensus        93 L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~~~  140 (142)
T 2dmg_A           93 LDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPS  140 (142)
T ss_dssp             EEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCSCC
T ss_pred             EEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCCCC
Confidence            9999999998753  579999999999997777788999999876543

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.95  E-value=2.3e-26  Score=136.13  Aligned_cols=122  Identities=45%  Similarity=0.752  Sum_probs=105.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCC-CCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~-~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      +++.|.+..+.|.|+|++|++|+..+.. +.+|||+++.+.+++....+|++++++.+|.|+|+|.|..++..++....|
T Consensus        13 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l   92 (138)
T 1ugk_A           13 FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELAL   92 (138)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEE
T ss_pred             EEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEE
Confidence            4789999999999999999999998874 889999999998766678999999999999999999994366555555789


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccc-cceEecccccC
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-EEWRELQSVEG  122 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~-~~w~~L~~~~~  122 (128)
                      .|+|||++.++++++||++.++|.++..+... ..|++|.+.+.
T Consensus        93 ~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~  136 (138)
T 1ugk_A           93 HFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS  136 (138)
T ss_dssp             EEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSS
T ss_pred             EEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCCC
Confidence            99999999999999999999999999776544 45799987654

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.95  E-value=2.6e-26  Score=134.42  Aligned_cols=117  Identities=35%  Similarity=0.604  Sum_probs=96.6

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |++.|.+..+.|.|+|.+|++|+..+..+.+|||+++.+.+++  ....+|++++++.+|.|+|+|.|..+...++....
T Consensus         9 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   88 (129)
T 2bwq_A            9 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERM   88 (129)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCE
T ss_pred             EEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCe
Confidence            4789999999999999999999998888899999999997654  35789999999999999999999833434444578


Q ss_pred             EEEEEEEccCCCC--CceeEEEEEecccccccccccceEecc
Q psy12095         79 LVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQ  118 (128)
Q Consensus        79 l~v~v~~~~~~~~--~~~lG~~~~~l~~l~~~~~~~~w~~L~  118 (128)
                      |.++|||++..++  +++||.+.++|.++.... .++||+|+
T Consensus        89 l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           89 LEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             EEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             EEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            9999999999887  999999999999986544 78999984

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.95  E-value=1.9e-26  Score=138.71  Aligned_cols=120  Identities=25%  Similarity=0.416  Sum_probs=103.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+|.|.+..+.|.|+|++|++|+..+ .+.+|||+++.+.+..  ....+|++++.+.+|.|+|+|.|. +...+.. ..
T Consensus        18 lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~-~~   94 (153)
T 3fbk_A           18 LRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP-VQEEDDQ-KR   94 (153)
T ss_dssp             EEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEE-CCGGGTT-SE
T ss_pred             EEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEe-cccHHhC-CE
Confidence            58999999999999999999999888 6889999999997643  357889999999999999999998 7555543 45


Q ss_pred             EEEEEEEccCCCC-CceeEEEEEecccccc-cccccceEecccccCC
Q psy12095         79 LVFAIFDFDRFSK-HDQIGEVKVALCQIDL-AQTIEEWRELQSVEGE  123 (128)
Q Consensus        79 l~v~v~~~~~~~~-~~~lG~~~~~l~~l~~-~~~~~~w~~L~~~~~~  123 (128)
                      |.|+|||++.+++ +++||++.++|.++.. +....+|++|.+....
T Consensus        95 L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A           95 LLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             EEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             EEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            9999999999876 8999999999999974 6778899999886543

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.94  E-value=2e-26  Score=136.72  Aligned_cols=122  Identities=34%  Similarity=0.584  Sum_probs=104.5

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+..  ....+|+++..+.+|.|+|+|.|..+...++....
T Consensus        12 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~   91 (141)
T 1v27_A           12 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERM   91 (141)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCE
T ss_pred             EEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCE
Confidence            4789999999999999999999999888899999999986543  45788999999999999999999833444445578


Q ss_pred             EEEEEEEccCCCC--CceeEEEEEecccccccccccceEecccccCC
Q psy12095         79 LVFAIFDFDRFSK--HDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        79 l~v~v~~~~~~~~--~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      |.|+|||++.+++  +++||.+.++|.++.... ..+||+|.+....
T Consensus        92 l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g  137 (141)
T 1v27_A           92 LEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG  137 (141)
T ss_dssp             EEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred             EEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence            9999999999887  899999999999986543 7899999887654

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.94  E-value=3.1e-26  Score=137.72  Aligned_cols=119  Identities=35%  Similarity=0.557  Sum_probs=97.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+++..  ..+|+++.++.+|.|+|+|.|. +...++....
T Consensus        21 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~   99 (153)
T 1w15_A           21 VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-IPCESLEEIS   99 (153)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-CCSSSSTTEE
T ss_pred             EEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEE-CCHHHhCceE
Confidence            478999999999999999999999888888999999999765443  6789999999999999999999 7766665678


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.|+|||++.++++++||++.+++..  .+....+|++|...++
T Consensus       100 l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~  141 (153)
T 1w15_A          100 VEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPR  141 (153)
T ss_dssp             EEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTT
T ss_pred             EEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCC
Confidence            99999999999999999999999988  3455677888766543

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.94  E-value=3e-26  Score=136.17  Aligned_cols=120  Identities=37%  Similarity=0.653  Sum_probs=101.6

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC-----------CeeecceeecCCCCeecceEEEccc
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK-----------KKFETKVHRKTLNPVFNETFVFKGV   69 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~-----------~~~~t~~~~~~~~p~~~e~~~f~~~   69 (128)
                      +++.|.  .+.|.|+|++|++|+..+..+.+|||+++.+.+...           ...+|++++++.+|.|+|+|.|..+
T Consensus        11 ~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v   88 (142)
T 1rh8_A           11 LQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSI   88 (142)
T ss_dssp             EEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSC
T ss_pred             EEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCc
Confidence            367777  789999999999999998888999999999965432           2568999999999999999999634


Q ss_pred             CCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        70 ~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      ..+++....|.|+|||++.++++++||.+.++|.++..+.....|++|.+..+
T Consensus        89 ~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           89 SMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             CHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred             CHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccCC
Confidence            44444456899999999999999999999999999987777889999988654

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.94  E-value=2.2e-25  Score=134.74  Aligned_cols=120  Identities=38%  Similarity=0.700  Sum_probs=102.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+.+.  ...+|+++.++.+|.|+|+|.|. +...++....
T Consensus        16 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~   94 (159)
T 1tjx_A           16 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQ   94 (159)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCE
T ss_pred             EEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEE-cCHHHhCCcE
Confidence            47899999999999999999999998888999999999976543  46789999999999999999998 7665554568


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccc------------cccccccceEeccccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQI------------DLAQTIEEWRELQSVE  121 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l------------~~~~~~~~w~~L~~~~  121 (128)
                      |.|+|||++.++++++||.+.+++..+            ..+....+|+.|.+..
T Consensus        95 l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A           95 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             EEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            999999999999999999999999854            2234567899988754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.94  E-value=1.2e-25  Score=133.66  Aligned_cols=120  Identities=37%  Similarity=0.568  Sum_probs=103.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+.+.  ...+|+++.++.+|.|+|+|.|..++..++....
T Consensus        20 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~   99 (142)
T 2chd_A           20 FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKT   99 (142)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCE
Confidence            47899999999999999999999998888999999999976443  5789999999999999999999734433332357


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      |.|+|||++.++++++||++.++|.++..+.....|+.|...
T Consensus       100 l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A          100 LRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             EEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            999999999999999999999999999888877788888754

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.93  E-value=9.3e-25  Score=142.82  Aligned_cols=120  Identities=70%  Similarity=1.144  Sum_probs=108.7

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+......+|+++.++.+|.|+|+|.|. +...++....|.
T Consensus        10 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~-v~~~~~~~~~l~   88 (284)
T 2r83_A           10 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELAGKTLV   88 (284)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEEC-CCGGGCTTCEEE
T ss_pred             EEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEE-echHHhCcCEEE
Confidence            5789999999999999999999998888899999999998766677889999999999999999999 776665567899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      |+|||++.++++++||++.++|.++..+.....|++|.+..
T Consensus        89 ~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  129 (284)
T 2r83_A           89 MAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE  129 (284)
T ss_dssp             EEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCS
T ss_pred             EEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccc
Confidence            99999999999999999999999998888888999998764

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.93  E-value=2.8e-25  Score=131.34  Aligned_cols=119  Identities=35%  Similarity=0.682  Sum_probs=100.8

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      ++++|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+.+.  ...+|+++.++.+|.|+|+|.|. +...++....
T Consensus         7 ~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~~l~~~~   85 (138)
T 3n5a_A            7 LSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD-IPTEKLRETT   85 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEE-CCGGGGGGEE
T ss_pred             EEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEE-CChhhcCceE
Confidence            57899999999999999999999988888999999999975443  36789999999999999999998 7666555568


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.++|||++.++++++||.+.+++.++.  ....+|++|...++
T Consensus        86 l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~~  127 (138)
T 3n5a_A           86 IIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARPR  127 (138)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHSTT
T ss_pred             EEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCCC
Confidence            9999999999999999999999998753  34567777765543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.93  E-value=1.8e-24  Score=131.60  Aligned_cols=104  Identities=36%  Similarity=0.627  Sum_probs=92.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|.+..+.|.|+|++|++|+..+..+.+|||+++.+.+..  ....+|+++.++.+|.|+|+|.|. +...++....
T Consensus        28 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~  106 (166)
T 2cm5_A           28 VSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKS  106 (166)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCE
T ss_pred             EEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEE-cchHhcCCCE
Confidence            4789999999999999999999999888899999999997643  357889999999999999999999 7655554568


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQI  105 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l  105 (128)
                      |.|+|||++.++++++||.+.+++..+
T Consensus       107 L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          107 LDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             EEEEEEECCCCCCCcEEEeEEEecccC
Confidence            999999999999999999999999875

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.92  E-value=1.7e-24  Score=132.35  Aligned_cols=116  Identities=30%  Similarity=0.522  Sum_probs=99.3

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCC-CCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~-~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      +++.|  ..+.|.|+|++|++|+..+. .+.+|||+++.+.+.+.  ...+|++++++.+|.|+|+|.|. +...   ..
T Consensus        23 ~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~---~~   96 (171)
T 2q3x_A           23 IGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD-ESPQ---GK   96 (171)
T ss_dssp             EEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECS-SCCT---TE
T ss_pred             EEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEE-ecCC---CC
Confidence            35667  68999999999999998875 68899999999976543  36789999999999999999998 6432   46


Q ss_pred             eEEEEEE-EccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         78 TLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        78 ~l~v~v~-~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      .|.|+|| |++.++++++||++.++|.++..+....+|++|.+...
T Consensus        97 ~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  142 (171)
T 2q3x_A           97 VLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSS  142 (171)
T ss_dssp             EEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGG
T ss_pred             EEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCccc
Confidence            8999999 99999999999999999999987778899999988765

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.92  E-value=6.8e-24  Score=126.97  Aligned_cols=115  Identities=35%  Similarity=0.589  Sum_probs=97.9

Q ss_pred             eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      ++.|  ..+.|+|+|++|++|+..+..+.+|||+++.+.+.+  ....+|++++++.+|.|+|+|.|. +...+. ...|
T Consensus        25 ~l~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~L  100 (149)
T 1a25_A           25 QAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-LKESDK-DRRL  100 (149)
T ss_dssp             EEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-CCSGGG-GCEE
T ss_pred             EEEe--cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEE-eccccC-CCEE
Confidence            4455  578999999999999999888899999999997643  357889999999999999999999 654333 3579


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      .|+|||++.++++++||++.++|.++..+ ..++||+|.+..
T Consensus       101 ~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~  141 (149)
T 1a25_A          101 SVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQE  141 (149)
T ss_dssp             EEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHH
T ss_pred             EEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCC
Confidence            99999999999999999999999998765 478999998764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.90  E-value=8.1e-24  Score=124.42  Aligned_cols=111  Identities=29%  Similarity=0.392  Sum_probs=96.7

Q ss_pred             eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEE
Q psy12095          2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVF   81 (128)
Q Consensus         2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v   81 (128)
                      ++.|....+.|+|+|.+|++|+..+..+.+|||+++.+.   ....+|+++..+.+|.|+|+|.|. +...   ...|.+
T Consensus         5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~-~~~~---~~~l~i   77 (133)
T 2ep6_A            5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFP-IKDI---HDVLEV   77 (133)
T ss_dssp             CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEE-ESCT---TCEEEE
T ss_pred             cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEE-ecCC---CCEEEE
Confidence            467888999999999999999999888899999999983   356789999999999999999998 6532   367999


Q ss_pred             EEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         82 AIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        82 ~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      +|||++..+++++||++.++|.++..+.  .+|++|.+..
T Consensus        78 ~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~  115 (133)
T 2ep6_A           78 TVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD  115 (133)
T ss_dssp             EEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC
T ss_pred             EEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC
Confidence            9999999988999999999999996653  5899998754

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.90  E-value=9.3e-23  Score=122.48  Aligned_cols=111  Identities=32%  Similarity=0.465  Sum_probs=88.6

Q ss_pred             cCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEE
Q psy12095          7 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAI   83 (128)
Q Consensus         7 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v   83 (128)
                      +..+.|+|+|++|++|+..+..+.+|||+++.+.+...   ...+|+++.++.+|.|+|+|.|. +...   ...|.|+|
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~l~~~V   92 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR-VHPQ---QHRLLFEV   92 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEE-ECTT---TCEEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEE-ecCC---CCEEEEEE
Confidence            46679999999999999888788999999999975432   46789999999999999999998 6543   36899999


Q ss_pred             EEccCCCCCceeEEEEEecccccccccc------cceEeccccc
Q psy12095         84 FDFDRFSKHDQIGEVKVALCQIDLAQTI------EEWRELQSVE  121 (128)
Q Consensus        84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~------~~w~~L~~~~  121 (128)
                      ||++.++++++||++.++|.++..+...      .+|+.|.+..
T Consensus        93 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~  136 (153)
T 3b7y_A           93 FDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS  136 (153)
T ss_dssp             EECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS
T ss_pred             EECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc
Confidence            9999999999999999999998766543      4899997754

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.90  E-value=4.4e-23  Score=135.71  Aligned_cols=120  Identities=52%  Similarity=0.896  Sum_probs=102.6

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|.+..+.|.|+|++|++|+.++..+.+|||+++.+.+++....+|+++.++.+|.|+|+|.|. +...++....|.
T Consensus        11 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~   89 (296)
T 1dqv_A           11 FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-VPLAELAQRKLH   89 (296)
T ss_dssp             EEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-CCGGGGSSCCCE
T ss_pred             EEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEE-ecHHHhcCCEEE
Confidence            5789999999999999999999999888899999999997767778899999999999999999998 766655556899


Q ss_pred             EEEEEccCCCCCceeEEEEEe-cccccc-cccccceEeccccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVA-LCQIDL-AQTIEEWRELQSVE  121 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~-l~~l~~-~~~~~~w~~L~~~~  121 (128)
                      |+|||++.++++++||++.++ +..+.. +.....|++|.+..
T Consensus        90 ~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~  132 (296)
T 1dqv_A           90 FSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG  132 (296)
T ss_dssp             EEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS
T ss_pred             EEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccc
Confidence            999999999999999999985 444432 34557899997654

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.90  E-value=1e-23  Score=122.89  Aligned_cols=109  Identities=22%  Similarity=0.397  Sum_probs=93.3

Q ss_pred             CCEEEEEEEEecCCCCC---CCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPAL---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD   85 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~---~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~   85 (128)
                      .+.|+|+|++|++|+.+   +..+.+|||+++.+.+......+|++++++.+|.|+|+|.|. +...+  ...|.+.|||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~--~~~l~i~V~d   78 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPNQ--ENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-ECTTS--CCEEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEE-ecCCC--CCEEEEEEEE
Confidence            57899999999999974   445789999999986544567899999999999999999999 64332  4689999999


Q ss_pred             ccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      ++..+ +++||.+.++|.++..+.....|++|.+..
T Consensus        79 ~d~~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  113 (126)
T 1rlw_A           79 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVT  113 (126)
T ss_dssp             CCSSC-CEEEEEEEEEGGGSCTTCEEEEEEEETTTE
T ss_pred             CCCCC-CceeEEEEEEHHHccCCCcEEEEEEcCCCc
Confidence            99875 889999999999998888889999998743

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=1.7e-22  Score=119.63  Aligned_cols=105  Identities=28%  Similarity=0.358  Sum_probs=91.9

Q ss_pred             cCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCC-CCCeEEEEEEE
Q psy12095          7 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADA-MNKTLVFAIFD   85 (128)
Q Consensus         7 ~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~~   85 (128)
                      ...+.|.|+|++|++|+..+. +.+|||+++.+.   ....+|+++.++.+|.|+|+|.|. +..... ....|.|+|||
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~~l~i~V~d   78 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFD-LRGIPLDFSSSLGIIVKD   78 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEE-CSSCCCCTTCEEEEEEEE
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEE-ecccccCCCCEEEEEEEE
Confidence            457899999999999999887 899999999984   456889999999999999999998 654322 34789999999


Q ss_pred             ccCCCCCceeEEEEEecccccccccccceEe
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDLAQTIEEWRE  116 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~  116 (128)
                      ++.++++++||.+.++|.++..+.....|+.
T Consensus        79 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~  109 (140)
T 2dmh_A           79 FETIGQNKLIGTATVALKDLTGDQSRSLPYK  109 (140)
T ss_dssp             TTCSSSCCCCEEEEEEGGGTCSSSCEEEEEE
T ss_pred             CCCCCCCceEEEEEEEHHHhccCCCceeEEe
Confidence            9999999999999999999988888889998

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.89  E-value=3.6e-23  Score=124.33  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=89.3

Q ss_pred             cCCCEEEEEEEEecCCCCCCC----------CCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCC
Q psy12095          7 FNANSLSVTVIQAEDLPALDM----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMN   76 (128)
Q Consensus         7 ~~~~~l~v~i~~a~~l~~~~~----------~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~   76 (128)
                      ...+.|+|+|++|++|++.+.          .+.+||||++.+.  +.+..+|+++..+.+|.|||+|.|. +..    .
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~--~~~~~kT~v~~ktlnP~WNE~F~f~-v~~----~   98 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD--QVRVGQTSTKQKTNKPTYNEEFCAN-VTD----G   98 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEE-EEE----E
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC--CEeeEEeeecCCCCCCccCcEEEEE-cCC----C
Confidence            345789999999999998762          2568999999983  2334689999999999999999998 653    2


Q ss_pred             CeEEEEEEEccCCCCCceeEEEEEeccccccc----ccccceEecccc
Q psy12095         77 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA----QTIEEWRELQSV  120 (128)
Q Consensus        77 ~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~----~~~~~w~~L~~~  120 (128)
                      ..|.++|||++.+++|++||.+.++|.++..+    ...+.|++|.+.
T Consensus        99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~~  146 (157)
T 2fk9_A           99 GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE  146 (157)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBSS
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCCC
Confidence            57999999999999999999999999998755    567899999864

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.89  E-value=5.2e-22  Score=118.61  Aligned_cols=106  Identities=29%  Similarity=0.462  Sum_probs=91.2

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      -.+.|+|+|++|++|++.+..+.+|||+.+.+   +....+|+++.++.+|.|+|+|.|. +...   ...|.++|||++
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT~~~~~t~nP~Wne~f~f~-v~~~---~~~l~~~v~d~d   87 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFE-CHNS---SDRIKVRVLDED   87 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEE---TTEEEECCCCCSCSSCEEEEEEEEE-ECST---TCEEEEEEEECC
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE---CCEEEECCccCCCCCCCcccEEEEE-ecCC---CCEEEEEEEECC
Confidence            35799999999999999988899999999998   4567889999999999999999998 6433   257999999999


Q ss_pred             CC-----------CCCceeEEEEEecccccccccccceEecccccC
Q psy12095         88 RF-----------SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        88 ~~-----------~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      ..           +++++||++.++|.++.  ....+|++|.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~  131 (148)
T 3kwu_A           88 DDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTD  131 (148)
T ss_dssp             CSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSST
T ss_pred             CCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCC
Confidence            86           78999999999999983  35679999986543

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.89  E-value=9.7e-22  Score=120.56  Aligned_cols=112  Identities=30%  Similarity=0.474  Sum_probs=86.9

Q ss_pred             ecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEE
Q psy12095          6 DFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFA   82 (128)
Q Consensus         6 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~   82 (128)
                      +...+.|+|+|++|++|+..+..+.+||||++.+.....   ...+|++++++.+|.|+|+|.|. +...   ...|.|.
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~---~~~L~~~   79 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR-VLPQ---RHRILFE   79 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEE-ECTT---TCEEEEE
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEE-EcCC---CCEEEEE
Confidence            456789999999999999988888999999999975333   46789999999999999999998 6532   3689999


Q ss_pred             EEEccCCCCCceeEEEEEecccccccccc-c-----ceEeccccc
Q psy12095         83 IFDFDRFSKHDQIGEVKVALCQIDLAQTI-E-----EWRELQSVE  121 (128)
Q Consensus        83 v~~~~~~~~~~~lG~~~~~l~~l~~~~~~-~-----~w~~L~~~~  121 (128)
                      |||++.++++++||.+.++|..+..+... +     +||.|.++.
T Consensus        80 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~  124 (176)
T 3m7f_B           80 VFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS  124 (176)
T ss_dssp             EEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS
T ss_pred             EEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC
Confidence            99999999999999999999999765433 2     799998754

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.88  E-value=6.8e-22  Score=129.23  Aligned_cols=120  Identities=38%  Similarity=0.694  Sum_probs=101.4

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|.+..+.|.|.|++|++|+..+..+.+|||+++.+.+++.  .+.+|++++++.+|.|+|+|.|. ++..++....
T Consensus       141 l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~  219 (284)
T 2r83_A          141 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQ  219 (284)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCTTTGGGEE
T ss_pred             EEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEe-CCHHHhCceE
Confidence            36789999999999999999999988888999999999876543  36789999999999999999998 7766555567


Q ss_pred             EEEEEEEccCCCCCceeEEEEEeccccc------------ccccccceEeccccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQID------------LAQTIEEWRELQSVE  121 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~------------~~~~~~~w~~L~~~~  121 (128)
                      |.|+|||++.++++++||++.+++..+.            .+....+|+.|.+..
T Consensus       220 l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~~  274 (284)
T 2r83_A          220 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  274 (284)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCHH
T ss_pred             EEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCcc
Confidence            9999999999999999999999997632            224456899998754

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.88  E-value=7.9e-23  Score=120.56  Aligned_cols=105  Identities=25%  Similarity=0.330  Sum_probs=90.7

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCCCCCCeEEEEEEEc
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF   86 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~   86 (128)
                      ..+.|+|+|++|++|+..+..+.+|||+++.+.   ....+|+++. ++.+|.|+|+|.|. +..   ....|.|+|||+
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~-v~~---~~~~l~~~V~d~   80 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT-VSE---GTTELKAKIFDK   80 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEE-EES---SCCEEEEEECCS
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEE-ECC---CCCEEEEEEEEC
Confidence            567899999999999998888899999999984   3467899998 89999999999998 653   346899999999


Q ss_pred             cCCCCCceeEEEEEecccc-cccccccceEeccc
Q psy12095         87 DRFSKHDQIGEVKVALCQI-DLAQTIEEWRELQS  119 (128)
Q Consensus        87 ~~~~~~~~lG~~~~~l~~l-~~~~~~~~w~~L~~  119 (128)
                      +.+++|++||.+.++|.++ ..+.....|++|..
T Consensus        81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  114 (136)
T 1wfj_A           81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK  114 (136)
T ss_dssp             SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec
Confidence            9999999999999999998 44555678999973

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.87  E-value=2.9e-21  Score=113.34  Aligned_cols=106  Identities=20%  Similarity=0.304  Sum_probs=88.8

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccC
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDR   88 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~   88 (128)
                      ...|+|+|++|++|.+.+..+.+|||+++.+.+. ....+|+++.++.+|.|+|+|.|. +...    ..|.++|||++.
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~-v~~~----~~l~~~v~d~d~   77 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLY-VGKT----DSITISVWNHKK   77 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEE-EETT----CCEEEEEEEGGG
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEE-eCCC----CEEEEEEEECCC
Confidence            4579999999999999988889999999998543 367889999999999999999998 5432    349999999999


Q ss_pred             CCC---CceeEEEEEecccc-cccccccceEecccc
Q psy12095         89 FSK---HDQIGEVKVALCQI-DLAQTIEEWRELQSV  120 (128)
Q Consensus        89 ~~~---~~~lG~~~~~l~~l-~~~~~~~~w~~L~~~  120 (128)
                      +++   |++||++.+++.++ .......+|++|...
T Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~  113 (132)
T 3pyc_A           78 IHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL  113 (132)
T ss_dssp             TTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS
T ss_pred             CCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeec
Confidence            876   79999999999887 333445689999775

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.87  E-value=5.7e-22  Score=116.93  Aligned_cols=105  Identities=18%  Similarity=0.312  Sum_probs=86.6

Q ss_pred             CCEEEEEEEEecCCCCCCCCC-----------CCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          9 ANSLSVTVIQAEDLPALDMGG-----------TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~-----------~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      .+.|+|+|++|++|++.+..+           .+|||+++.+.  +....+|++..++.+|.|||+|.|. +...    .
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~--~~~~~~T~~~~~t~nP~WnE~f~f~-v~~~----~   77 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD--DSRIGQTATKQKTNSPAWHDEFVTD-VCNG----R   77 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEE-EEEE----C
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC--CeEeeeeeEECCCcCCccCCEEEEE-ecCC----C
Confidence            478999999999999876433           38999999982  3334678888899999999999998 6532    5


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccc--cccceEecccc
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQSV  120 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~--~~~~w~~L~~~  120 (128)
                      .|.++|||++.+++|++||.+.++|.++..+.  ..+.|++|.+.
T Consensus        78 ~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~~  122 (136)
T 1gmi_A           78 KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE  122 (136)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSS
T ss_pred             EEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCCC
Confidence            79999999999999999999999999987643  34789999864

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.86  E-value=5.4e-22  Score=130.52  Aligned_cols=105  Identities=38%  Similarity=0.588  Sum_probs=92.3

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      ++++|.+..+.|+|.|++|++|..++..+.+|||+++.+.+++.  .+.+|++++++.+|.|+|.|.|. ++...+....
T Consensus       143 vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~  221 (296)
T 1dqv_A          143 FSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VAPESVENVG  221 (296)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-CCSGGGGSCC
T ss_pred             EEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEE-cCHHHccCcE
Confidence            36889999999999999999999988888899999999875443  57789999999999999999998 7766555567


Q ss_pred             EEEEEEEccCCCCCceeEEEEEeccccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQID  106 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~  106 (128)
                      |.|+|||++.++++++||.+.+++..+.
T Consensus       222 L~i~V~d~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          222 LSIAVVDYDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             CCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             EEEEEEeCCCCCCCceEEEEEECCccCC
Confidence            9999999999999999999999998763

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=6e-20  Score=112.23  Aligned_cols=105  Identities=16%  Similarity=0.161  Sum_probs=86.2

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      ..+.|+|+|++|++|+.....+.+||||++.+.   ....+|+++.++.+|.|+|+|.|. +..    ...|.|+|||++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~-v~~----~~~L~~~V~D~d  105 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSHQ  105 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEECC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEE-eCC----CCEEEEEEEECC
Confidence            466899999999999944334459999999983   277889999999999999999998 642    468999999999


Q ss_pred             CCCCCceeEEEEEeccccccccc-----ccceEecccc
Q psy12095         88 RFSKHDQIGEVKVALCQIDLAQT-----IEEWRELQSV  120 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~~~-----~~~w~~L~~~  120 (128)
                      .++++++||.+.++|.++..+..     ...|++|...
T Consensus       106 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~  143 (173)
T 2nq3_A          106 TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD  143 (173)
T ss_dssp             SSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred             CCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence            99999999999999998854322     2569999875

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.79  E-value=7.2e-19  Score=122.94  Aligned_cols=109  Identities=28%  Similarity=0.452  Sum_probs=93.0

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      ..+.|+|+|++|++|++.+..+.+|||+.+.+   +....+|+++.++.+|.|+++|.|. +..  .....+.++|||++
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~---~~~~~~T~~~~~t~nP~w~e~f~f~-~~~--~~~~~l~~~v~d~d  458 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWNFNCQFF-IKD--LYQDVLCLTLFDRD  458 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE---TTEEEECCCCSSCSSCEEEEEEEEE-ESC--TTTCEEEEEEEECC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEE---CCeeccCCccCCCCCCccCceEEEE-ecC--CCCCEEEEEEEeCC
Confidence            44689999999999999988899999999998   4467899999999999999999998 543  23467999999999


Q ss_pred             CCCCCceeEEEEEeccccccccc----ccceEecccccC
Q psy12095         88 RFSKHDQIGEVKVALCQIDLAQT----IEEWRELQSVEG  122 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~~~----~~~w~~L~~~~~  122 (128)
                      .+++|++||.+.++|.++..+..    ...|+.|.+...
T Consensus       459 ~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~  497 (510)
T 3jzy_A          459 QFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPT  497 (510)
T ss_dssp             SSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSS
T ss_pred             CCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCC
Confidence            99999999999999999876544    678999887643

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.78  E-value=3.6e-19  Score=128.23  Aligned_cols=109  Identities=22%  Similarity=0.387  Sum_probs=95.1

Q ss_pred             CCCEEEEEEEEecCCCC---CCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEE
Q psy12095          8 NANSLSVTVIQAEDLPA---LDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIF   84 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~---~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~   84 (128)
                      ..+.|+|+|++|++|+.   .+..+.+||||++.+.+....+.+|++++++.+|.|+|+|.|. +...  ....|.|+||
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~-v~~~--~~~~L~~~V~   92 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPN--QENVLEITLM   92 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-ECTT--SCCBCEEEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEE-ecCC--CCCEEEEEEE
Confidence            46799999999999998   6667889999999986554567899999999999999999998 6543  2357999999


Q ss_pred             EccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         85 DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        85 ~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      |++.++ |++||++.++|.++..+....+|++|.+.
T Consensus        93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            999998 99999999999999888888899999865

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.76  E-value=6.8e-18  Score=98.79  Aligned_cols=87  Identities=17%  Similarity=0.257  Sum_probs=69.5

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeeccee-ecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVH-RKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~-~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      -+.|.|+|.+|+++..   .+.+|||+++..     +..+|.++ .++.+|.|||+|.|. +...   ...|.|+|||++
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~~-----~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D~d   71 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLKV-----QNVKSTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWNKG   71 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEEE-----TTEEEECCCEESSSCEEEEEEEEE-ECCC---SSEEEEEEEECC
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEEe-----cCEEEeEecCCCCCceECCEEEEE-EeCC---CCeEEEEEEECC
Confidence            3689999999998852   567899999982     22345444 478999999999998 6532   357999999999


Q ss_pred             CCCCCceeEEEEEeccccccc
Q psy12095         88 RFSKHDQIGEVKVALCQIDLA  108 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~  108 (128)
                       +.+|++||++.++|.++...
T Consensus        72 -~~~dd~iG~~~i~l~~l~~~   91 (131)
T 2cjt_A           72 -LIWDTMVGTVWIPLRTIRQS   91 (131)
T ss_dssp             -SSCEEEEEEEEEEGGGSCBC
T ss_pred             -CCCCCeEEEEEEEHHHhhhc
Confidence             88999999999999998543

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.74  E-value=3.5e-17  Score=116.62  Aligned_cols=110  Identities=25%  Similarity=0.381  Sum_probs=91.3

Q ss_pred             CCCEEEEEEEEecCCCCCCC--CCCCCCeEEEEEeCC--CCCeeecceeecC-CCCeecceEEEcccCCCCCCCCeEEEE
Q psy12095          8 NANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPD--KKKKFETKVHRKT-LNPVFNETFVFKGVPYADAMNKTLVFA   82 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~--~~~~~p~~~~~~~~~--~~~~~~t~~~~~~-~~p~~~e~~~f~~~~~~~~~~~~l~v~   82 (128)
                      ..+.|+|+|++|++|+..+.  .+.+||||++.+.+.  ...+.+|+++..+ .+|.|+|+|.|. +...+.  ..|+|.
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~-v~~~el--~~L~~~  571 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFM  571 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEE-ESCGGG--CEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEE-EecCCC--CEEEEE
Confidence            45689999999999998763  678999999999543  2357789999987 999999999998 665443  579999


Q ss_pred             EEEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         83 IFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        83 v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      |||++.++++++||++.++|..+..|.   .|++|.+..++
T Consensus       572 V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~  609 (624)
T 1djx_A          572 VEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGD  609 (624)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSC
T ss_pred             EEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcC
Confidence            999999999999999999999997764   58898776543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.73  E-value=3.8e-17  Score=114.52  Aligned_cols=100  Identities=24%  Similarity=0.279  Sum_probs=83.4

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      +.|+|+|++|++|+. +..+.+|||+++.+.   .+..+|++++++.+|.|+|+|.|. +.... ....|.|+|||++..
T Consensus       394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~-~~~~~-~~~~L~~~V~D~D~~  467 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFE-NVLLS-TGGPLRVQVWDADYG  467 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEE-EEETT-TCCCEEEEEEECCSS
T ss_pred             cEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEE-EecCC-CCCEEEEEEEECCCC
Confidence            589999999999998 878899999999983   356899999999999999999997 32211 246799999999999


Q ss_pred             CCCceeEEEEEecccccccccccceEeccc
Q psy12095         90 SKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      .+|++||.+.++|..   | ....|+.|..
T Consensus       468 ~~dD~LG~~~~~L~~---g-~~~~~~~l~~  493 (540)
T 3nsj_A          468 WDDDLLGSCDRSPHS---G-FHEVTCELNH  493 (540)
T ss_dssp             SCCEEEEEEEECCCS---E-EEEEEEECSS
T ss_pred             CCCCEEEEEEEEeeC---C-cEEEEEEcCC
Confidence            999999999999872   3 3567888764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.73  E-value=3.5e-17  Score=117.86  Aligned_cols=116  Identities=34%  Similarity=0.600  Sum_probs=98.7

Q ss_pred             EEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          3 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         3 ~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      +.+....+.|.|+|.+|++|.+++..+.+|||+++.+.+.+  ..+.+|+++..+.+|.|+|+|.|. +...+ ....+.
T Consensus       165 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~-~~~~~-~~~~L~  242 (674)
T 3pfq_A          165 IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ-LKESD-KDRRLS  242 (674)
T ss_dssp             EEEEECSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEE-CCSTT-TTCEEE
T ss_pred             ccceeccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeee-cccCC-ccceee
Confidence            45666788999999999999999999999999999997654  347889999999999999999998 65544 235699


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      ++|||++..++|+++|.+.+++.++... ..++|+.|....
T Consensus       243 v~v~d~d~~~~dd~iG~~~i~l~~l~~~-~~~~w~~Lls~~  282 (674)
T 3pfq_A          243 VEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQE  282 (674)
T ss_dssp             EEEEECCSSSCCEECCBCCCBTTHHHHC-CEEEEEECBCTT
T ss_pred             eEEeecccccccccccccccchhhhccC-Ccccceeecccc
Confidence            9999999999999999999999998654 358999987654

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.72  E-value=5.5e-17  Score=98.51  Aligned_cols=86  Identities=17%  Similarity=0.256  Sum_probs=69.5

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      .+.|+|+|.+|+++.   ..+.+||||++..     +..+|+++. ++.+|.|||+|.|. +...   ...|.|+|||++
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~~-----~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D~d   80 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLKV-----QNVESTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWNKG   80 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEEE-----TTEEEECCCEESSSCEEEEEEEEE-CCCT---TSEEEEEEEECC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEEe-----cceEEEEecCCCCCCCCCCEEEEE-eeCC---CCEEEEEEEECC
Confidence            458999999999874   2567899999982     234455554 68999999999998 6532   357999999999


Q ss_pred             CCCCCceeEEEEEecccccc
Q psy12095         88 RFSKHDQIGEVKVALCQIDL  107 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~  107 (128)
                       +.+|++||.+.++|.++..
T Consensus        81 -~~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           81 -LIWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             -SSCCEEEEEEEEEGGGSCB
T ss_pred             -CCCCceEEEEEEEHHHhcc
Confidence             8899999999999999854

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.70  E-value=2.1e-16  Score=92.20  Aligned_cols=106  Identities=21%  Similarity=0.281  Sum_probs=88.8

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCCCCCCeEEEEEEEc
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF   86 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~   86 (128)
                      ...-|+|.|.+|.+|+.     .+|||+++.+   ...+++|+++. .+.+|.|+|.|.|+ +.........|.+.|+++
T Consensus        19 ~~msL~V~l~~a~~Lpg-----~~Dp~akv~F---Rg~k~kTkvi~~~~~npvfnE~F~wp-l~~~ld~~e~L~v~V~d~   89 (144)
T 3l9b_A           19 SHMALIVHLKTVSELRG-----RADRIAKVTF---RGQSFYSRVLENCEDVADFDETFRWP-VASSIDRNEVLEIQIFNY   89 (144)
T ss_dssp             CCEEEEEEEEEEESCCS-----CEEEEEEEEE---TTEEEECCCEEEECSCEEEEEEEEEE-ESSCCCTTCEEEEEEEEE
T ss_pred             CcEEEEEEEEEecCCCC-----CCCCeEEEEE---eccceeeEEeccCCCCceEcceEEec-CCCCCCCCCEEEEEEEEC
Confidence            45678999999999984     6699999998   55688999998 69999999999998 766555668899999999


Q ss_pred             cCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         87 DRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        87 ~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      +++.++++||.+.++|..+........+..|.+..+
T Consensus        90 ~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~  125 (144)
T 3l9b_A           90 SKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNN  125 (144)
T ss_dssp             CTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTS
T ss_pred             ccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCC
Confidence            999999999999999998877666666666665543

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.60  E-value=4.5e-17  Score=113.32  Aligned_cols=101  Identities=21%  Similarity=0.282  Sum_probs=13.9

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecC---CCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKT---LNPVFNETFVFKGVPYADAMNKTLVFAIFD   85 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~---~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~   85 (128)
                      .+.|+|+|++|++|++++     ||||.+.+.  +....+|++++++   .+|.|||+|.|. +...   ...+.+.|||
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~~~~~kT~v~~kt~~glnP~WnE~F~f~-~~~~---~~~L~v~V~d   78 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLD--DMLYARTTSKPRSASGDTVFWGEHFEFN-NLPA---VRALRLHLYR   78 (483)
T ss_dssp             EECC----------------------------------------------------CCEECC------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEEC--CeEEeeeeEEeCCCCCCCCccccEEEEe-cCCC---ccEEEEEEEe
Confidence            457899999999998876     899999883  3335689999888   999999999998 4322   2578999999


Q ss_pred             c-c---CCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         86 F-D---RFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        86 ~-~---~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      . +   ..++|++||.+.+++..+..+...++|++|.+.
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~  117 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLP  117 (483)
T ss_dssp             ----------------------------CCEECC-----
T ss_pred             cCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCC
Confidence            4 3   367899999999999999888888899999654

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.48  E-value=5.3e-13  Score=97.51  Aligned_cols=100  Identities=27%  Similarity=0.424  Sum_probs=78.3

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCC--C-CCeeecc-eee-cCCCCeecc-eEEE-cccCCCCCCCCeEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--K-KKKFETK-VHR-KTLNPVFNE-TFVF-KGVPYADAMNKTLVF   81 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~--~-~~~~~t~-~~~-~~~~p~~~e-~~~f-~~~~~~~~~~~~l~v   81 (128)
                      .+.|+|+|++|++|+..    .+||||++.+.+.  . .++++|+ ++. ++.+|.||| +|.| . +...++  ..|++
T Consensus       677 ~~~L~V~Visa~~L~~~----~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~-v~~~el--~~Lr~  749 (799)
T 2zkm_X          677 ATTLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK-ILMPEL--ASLRV  749 (799)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEE-ESSGGG--CEEEE
T ss_pred             eeeEEEEEEeccccCcc----CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEE-EccCCc--cEEEE
Confidence            45799999999999853    6799999999642  2 2357899 776 468999999 7999 6 655544  47999


Q ss_pred             EEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         82 AIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        82 ~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      .|||++    ++++|++.++|..+..|.   .|++|.+..+
T Consensus       750 ~V~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~~~~g  783 (799)
T 2zkm_X          750 AVMEEG----NKFLGHRIIPINALNSGY---HHLCLHSESN  783 (799)
T ss_dssp             EEEETT----TEEEEEEEEEGGGBCCEE---EEEEEECTTC
T ss_pred             EEEEeC----CCccceEeeehhhcCCCc---EEEeccCCCC
Confidence            999986    789999999999997764   4677766543

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.47  E-value=7.5e-13  Score=96.58  Aligned_cols=101  Identities=24%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--C--Ceeecceeec-CCCCeecce-EEEcccCCCCCCCCeEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--K--KKFETKVHRK-TLNPVFNET-FVFKGVPYADAMNKTLVFAI   83 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~--~~~~t~~~~~-~~~p~~~e~-~~f~~~~~~~~~~~~l~v~v   83 (128)
                      ..|+|+|++|++|+..    .+||||++.+.+..  .  .+++|+++.. +.+|.|||+ |.|..+...++  ..|++.|
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V  723 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIV  723 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEE
Confidence            5799999999999754    57999999996422  2  4678999885 599999997 99873433333  5799999


Q ss_pred             EEccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         84 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        84 ~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      ||++    ++++|++.++|..+..|.   .+++|.+..++
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~  756 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKPGY---RHVPLRNESNR  756 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCCEE---EEEEEECTTSC
T ss_pred             EecC----CCeeeEEEEEHHHcCCcc---eEEEEeCCCCC
Confidence            9974    789999999999998775   35677665443

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.47  E-value=7.2e-13  Score=97.25  Aligned_cols=100  Identities=24%  Similarity=0.353  Sum_probs=77.3

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCC--CC-Ceeecceeec-CCCCeecc-eEEEcccCCCCCCCCeEEEEEE
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KK-KKFETKVHRK-TLNPVFNE-TFVFKGVPYADAMNKTLVFAIF   84 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~--~~-~~~~t~~~~~-~~~p~~~e-~~~f~~~~~~~~~~~~l~v~v~   84 (128)
                      ..|+|+|++|++|+..    .+||||++.+.+.  .. .+++|+++.+ +.+|.||| +|.|..+...++  ..|++.||
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~  798 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAF  798 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEE
Confidence            3799999999999853    5799999999642  22 3468999875 59999998 699973333333  47999999


Q ss_pred             EccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         85 DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        85 ~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |++    ++++|++.++|..+..|..   +++|.+..+
T Consensus       799 D~d----ddfiG~~~lpL~~L~~GyR---~vpL~~~~g  829 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAIRSGYH---YVCLRNEAN  829 (885)
T ss_dssp             ETT----TEEEEEEEEETTTCCCEEE---EEEEECTTS
T ss_pred             cCC----ccEEeeEEEEHHHcCCCce---EEEecCCCC
Confidence            986    7899999999999987743   566666544

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.17  E-value=7.7e-10  Score=62.96  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=72.7

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC-Ceeec-ceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEc
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK-KKFET-KVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDF   86 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~-~~~~t-~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~   86 (128)
                      ...|+|.+.+..--+........||||.+.+...-. ...+| ...+.+..|.|++.|.-. +.    +...|.+.|++.
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~-V~----~Gr~l~i~Vfh~   79 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAH-IY----EGRVIQIVLMRA   79 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEE-CC----TTCEEEEEEEEE
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEee-ee----CCEEEEEEEEcC
Confidence            456888887654322222234679999998842111 12234 556689999999999877 54    246799999965


Q ss_pred             cCCCCCceeEEEEEecccccc-----cccccceEecccccC
Q psy12095         87 DRFSKHDQIGEVKVALCQIDL-----AQTIEEWRELQSVEG  122 (128)
Q Consensus        87 ~~~~~~~~lG~~~~~l~~l~~-----~~~~~~w~~L~~~~~  122 (128)
                      ..    +|++.+.+++.++..     +...+-|++|.+.++
T Consensus        80 a~----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~Gk  116 (126)
T 1yrk_A           80 AE----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAK  116 (126)
T ss_dssp             TT----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSSCE
T ss_pred             CC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccCcE
Confidence            54    899999999999863     344567999999764

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.12  E-value=1.4e-09  Score=62.75  Aligned_cols=105  Identities=17%  Similarity=0.232  Sum_probs=73.5

Q ss_pred             CCEEEEEEEEecCCCCCC-CCCCCCCeEEEEEeCCCC-Ceeec-ceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK-KKFET-KVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD   85 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~-~~~~~~p~~~~~~~~~~~-~~~~t-~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~   85 (128)
                      ...|+|.+.+..--+... .....||||.+.+...-. ...+| ...+.+..|.|++.|.-. +.    +...|.|.|++
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~-V~----~Gr~l~i~Vfh   83 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAH-IN----KGRVMQIIVKG   83 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEEC-CC----SSCEEEEEEEC
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeee-EE----CCeEEEEEEEc
Confidence            456888887765433221 123579999998842211 12445 566678999999999887 54    24679999996


Q ss_pred             ccCCCCCceeEEEEEecccccc-----cccccceEecccccC
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDL-----AQTIEEWRELQSVEG  122 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~-----~~~~~~w~~L~~~~~  122 (128)
                      ...    +|++.+.+.+.++..     +...+-|++|.+.++
T Consensus        84 ~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~Gk  121 (138)
T 2enj_A           84 KNV----DLISETTVELYSLAERCRKNNGKTEIWLELKPQGR  121 (138)
T ss_dssp             SSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSSCE
T ss_pred             CCC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccCcE
Confidence            543    799999999999863     344578999999764

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=96.80  E-value=0.04  Score=34.57  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             eeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC----CCCceeEEEEEeccc
Q psy12095         46 KFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALCQ  104 (128)
Q Consensus        46 ~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~----~~~~~lG~~~~~l~~  104 (128)
                      ..+|.+...+.+|.|+|++-+. ++.+......|.+.+++...-    ..+..+|-+.++|-.
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~-LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVA-IPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEE-ECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eEEEEEEEcCCCCCceEeEEEe-eChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            4567777778999999999999 998887778899998875531    223479999999753

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=96.04  E-value=0.14  Score=38.85  Aligned_cols=93  Identities=16%  Similarity=0.222  Sum_probs=61.5

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCC-CCCeEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADA-MNKTLVFAIF   84 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~   84 (128)
                      ...++|+|..+.++...   ...+.|+.+.+--++.   ....|..+....+|.|+|...|+ +...++ ....|.+.+|
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~-i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFD-ISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEE-EEGGGCCTTCEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcc-cccccCCcccEEEEEEE
Confidence            45789999999988644   2456788877643332   12335555556789999999998 665543 3466899999


Q ss_pred             EccCC--C----------CCceeEEEEEecccc
Q psy12095         85 DFDRF--S----------KHDQIGEVKVALCQI  105 (128)
Q Consensus        85 ~~~~~--~----------~~~~lG~~~~~l~~l  105 (128)
                      +...-  +          ....+|.+.++|-+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECC
Confidence            85321  1          234899999998775

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=94.79  E-value=0.64  Score=35.96  Aligned_cols=94  Identities=15%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC---eeecceeecCCCCeecceEEEcccCCCCC-CCCeEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKGVPYADA-MNKTLVFAIF   84 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~---~~~t~~~~~~~~p~~~e~~~f~~~~~~~~-~~~~l~v~v~   84 (128)
                      ...++|+|..+.++.... ....+.|+.+.+.-++..   ...|.... ..++.|+|...|+ +...++ ....|.+.+|
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~-i~i~dLPr~arL~~tl~  430 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYD-IYIPDLPRAARLCLSIC  430 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEE-EEGGGCCTTCEEEEEEC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEec-CccccCChhcEEEEEEE
Confidence            457899999998875332 234578988887533322   22343333 3467799999998 665554 3466899999


Q ss_pred             EccCC----CCCceeEEEEEecccc
Q psy12095         85 DFDRF----SKHDQIGEVKVALCQI  105 (128)
Q Consensus        85 ~~~~~----~~~~~lG~~~~~l~~l  105 (128)
                      +....    .....+|.+.++|-+.
T Consensus       431 ~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          431 SVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCCC-------CCEEEEEESBCT
T ss_pred             EecCccCcccccceeEEeeeeeEcc
Confidence            85532    1235799999998875

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=93.01  E-value=0.22  Score=38.46  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC---CeeecceeecCCCCeecceEEEcccCCCCCC-CCeEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKGVPYADAM-NKTLVFAIF   84 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~---~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~-~~~l~v~v~   84 (128)
                      ...++|+|..+.++...   ...+.|+.+.+--++.   ....|..+....+|.|+|...|+ +...++. ...|.+.+|
T Consensus       352 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~-i~~~dLPr~a~L~~ti~  427 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFD-INICDLPRMARLCFAVY  427 (1092)
T ss_dssp             CSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEE-EESSSCCTTCEEEEECC
T ss_pred             CCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeC-CccccCChhcEEEEEEE
Confidence            45788999998887644   2456777765532221   12334445556789999999998 6665543 466889999


Q ss_pred             EccCC----------------------CCCceeEEEEEecccc
Q psy12095         85 DFDRF----------------------SKHDQIGEVKVALCQI  105 (128)
Q Consensus        85 ~~~~~----------------------~~~~~lG~~~~~l~~l  105 (128)
                      +....                      +....+|.+.++|-+.
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  470 (1092)
T 2y3a_A          428 AVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDF  470 (1092)
T ss_dssp             CC------------------------------CCEEEEESBCT
T ss_pred             EecCccccccccccccccccccccccccccceeEEEeeeeECC
Confidence            85210                      1123799999998775

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=90.31  E-value=1.2  Score=26.46  Aligned_cols=113  Identities=15%  Similarity=0.125  Sum_probs=67.0

Q ss_pred             ecCCCEEEEEEEEecCCCCC-CCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCC-----CCCeE
Q psy12095          6 DFNANSLSVTVIQAEDLPAL-DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADA-----MNKTL   79 (128)
Q Consensus         6 ~~~~~~l~v~i~~a~~l~~~-~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~-----~~~~l   79 (128)
                      .+..+.+.+.|.++.--+.. ...+..+|...+.+.--....+.|.+.. ..+|.++.+-.+. +..++.     ....+
T Consensus        14 ~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~-V~~d~~fl~yL~~~~l   91 (156)
T 2yrb_A           14 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYL-VHVNDLFLQYIQKNTI   91 (156)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEE-ECCSHHHHHHHHHCCE
T ss_pred             cCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEE-EEeCHHHHHHHhcCCE
Confidence            35667888999988632211 0112335655555532233345566555 6789999888877 543321     12568


Q ss_pred             EEEEEEccCCCCCceeEEEEEeccccccc-ccccceEeccccc
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWRELQSVE  121 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~-~~~~~w~~L~~~~  121 (128)
                      .++++.... ..-+.+|.++|+|..+... ....+-..|.+..
T Consensus        92 ~lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~  133 (156)
T 2yrb_A           92 TLEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGTK  133 (156)
T ss_dssp             EEEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSS
T ss_pred             EEEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCC
Confidence            888887643 3445799999999987533 2234455565543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-37
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	5e-37
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	4e-36
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-32
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-30
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-29
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-29
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	9e-29
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-28
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	5e-28
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-27
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	9e-25
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-21
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-19
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-17
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-15
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-14
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	6e-14
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-11

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  122 bits (306), Expect = 2e-37
 Identities = 83/119 (69%), Positives = 94/119 (78%), Gaps = 1/119 (0%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
             L+YDF  N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVF
Sbjct: 25  YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF 84

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 119
           NE F FK VPY++   KTLV A++DFDRFSKHD IGE KV +  +D     EEWR+LQS
Sbjct: 85  NEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 5e-37
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 5/122 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK--FETKVHRKTLNP 58
           +KL +D   + L VT++ A+DLP+ + G   +PYVK+Y LPD+  K    TK  +KTL P
Sbjct: 5   IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 64

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQIDLAQTIEEWRE 116
            +N+TF++  V   +   + L   ++D  R  +   + +GE+ + L    L      W +
Sbjct: 65  KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYK 123

Query: 117 LQ 118
           LQ
Sbjct: 124 LQ 125

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 4e-36
 Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 2/121 (1%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV 59
             LEY+F   +  V + +A  LPA+D    TSDPY+K+ +LP+KK K +T+V RKTL+P 
Sbjct: 13  FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA 72

Query: 60  FNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQ 118
           F+ETF F G+PY       L F I  FDRFS+ D IGEV + L  I+L++  +   RE+ 
Sbjct: 73  FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132

Query: 119 S 119
           S
Sbjct: 133 S 133

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (271), Expect = 4e-32
 Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 58
           + L Y    N+L+V V++A  LP  D+ G SDPYVKV L   KK+  K +T V + T N 
Sbjct: 6   VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA 65

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
           VFNE FVF  +P       ++ F + D +R S+++ IG + +             W+E+ 
Sbjct: 66  VFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT--AEGSGGGHWKEIC 122

Query: 119 S 119
            
Sbjct: 123 D 123

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 1e-30
 Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 11/130 (8%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK-----------KKKFET 49
           ++L+ +++  +L + ++QA +L   D  G SDP+VKVYLLP +           + K  T
Sbjct: 9   IQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT 68

Query: 50  KVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 109
           K  +K+LNP +N+T ++K +     M KTL   ++D+DRFS +D +GEV + L       
Sbjct: 69  KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128

Query: 110 TIEEWRELQS 119
               W  L+ 
Sbjct: 129 NTPRWYPLKE 138

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (254), Expect = 1e-29
 Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 5/125 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 58
           + L Y      L V +I+   L A+D  G SDP+VK++L PD   K K +T++ +KTLNP
Sbjct: 6   VSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNP 65

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
            FNE F +  + ++D   K+L  +++D+D    +D IG  ++ +      + ++ W E  
Sbjct: 66  EFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AKGERLKHWYECL 122

Query: 119 SVEGE 123
             + +
Sbjct: 123 KNKDK 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (253), Expect = 1e-29
 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 6/126 (4%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK--FETKVHRKTLNP 58
           + ++   +   L V V  A++L  +D  G SDPYVK+ L+PD K +   +TK  + +LNP
Sbjct: 6   IYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNP 65

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
            +NETF F+ +  +D  ++ L   I+D+D  S++D +G +   + ++  A  ++ W +L 
Sbjct: 66  EWNETFRFQ-LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLL 122

Query: 119 SV-EGE 123
           S  EGE
Sbjct: 123 SQEEGE 128

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 9e-29
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 2   KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPVF 60
            L+YD     L VT ++A      +  G  D YV+  +       + +T + ++ L+  +
Sbjct: 18  CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTW 74

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
            E  V   +   +    TL   +   DRFS+H   GE+++ L    +     +W EL++ 
Sbjct: 75  EEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133

Query: 121 EGEGG 125
               G
Sbjct: 134 GPSSG 138

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.5 bits (247), Expect = 2e-28
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 15/135 (11%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKF--ETKVHRKTLNP 58
             L Y   A  L+V +++A++L  +D+GG SDPYVK++L+ + K+    +T + + TLNP
Sbjct: 16  FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP 75

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA---------- 108
            +NE+F F+ VP+       +V  + D+D+  K+D IG+V V                  
Sbjct: 76  YYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLAN 134

Query: 109 --QTIEEWRELQSVE 121
             + I +W  LQ  E
Sbjct: 135 PRRPIAQWHTLQVEE 149

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.7 bits (242), Expect = 5e-28
 Identities = 62/121 (51%), Positives = 82/121 (67%), Gaps = 3/121 (2%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
             L Y + ++ L V ++QA DLPA D  G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+F
Sbjct: 9   FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIF 68

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE--WRELQ 118
           NETF F  VP A+   + L F+++DFDRFS+HD IG+V +        Q  +   WR++ 
Sbjct: 69  NETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127

Query: 119 S 119
            
Sbjct: 128 E 128

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.6 bits (242), Expect = 1e-27
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 1   MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNP 58
             L Y   A  L+VT+I+A +L A+D+ G SDPYVK  L+ + +  KK +T + + TLNP
Sbjct: 11  FSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNP 70

Query: 59  VFNETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 118
            +NE  VF  V      N  L  A+ D+D    ++ IG  +V     D     E W E+ 
Sbjct: 71  TYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEML 128

Query: 119 S 119
           +
Sbjct: 129 A 129

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 9e-25
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 9   ANSLSVTVIQAEDLP---ALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFV 65
           ++  +V V++A  +      DM  T DPYV++++      +  T+     +NPV+NETF 
Sbjct: 2   SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61

Query: 66  FKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 120
           F   P  + + +     + D +     + +G     +  + + +  E       V
Sbjct: 62  FILDPNQENVLE---ITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV 112

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 81.3 bits (200), Expect = 2e-21
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V ++ A+ L   D     DPYV++      +K            P +NETF+F     
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIF----T 65

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE-EWRELQSVEGEGGQLL 128
                  L   IFD D  ++ D +GE  + L  + +  +I      +   E   G++ 
Sbjct: 66  VSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIW 123

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.3 bits (187), Expect = 1e-19
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 12  LSVTVIQAEDLPALDM--GGTSDPYVKVYLLP---DKKKKFETKVHRKTLNPVFNETFVF 66
           L V +I  + LP ++       DP V V +     D   +    +     NP ++  F F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 67  KGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 123
                       + F + D+D  SK+D IG+  +    +   +       L S  G+
Sbjct: 66  ---EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL---KQGYRHVHLLSKNGD 116

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 1e-17
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V V++A DL A D  G SDP+  +        + +T    K LNP +N+ F F     
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLE---LGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 64

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG 124
            D +       +FD D     D +G+V + L  I   Q       L++ + E 
Sbjct: 65  HDVL----EVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKNKDLEQ 111

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 65.7 bits (159), Expect = 2e-15
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 20/120 (16%)

Query: 12  LSVTVIQAEDLPALDM-----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 60
           L + + +A  L                    DPY+ +    D  +  +T   +KT +P +
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN--VDDSRIGQTATKQKTNSPAW 65

Query: 61  NETFVFKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQ 118
           ++ FV           + +  A+F        D +    +   ++     +  E+W +L+
Sbjct: 66  HDEFVTD-----VCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 3e-15
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L +TVI A+            PYV+V +    KK    +    T +P + +         
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKT---EKCNNTNSPKWKQPLTVIVT-- 62

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 105
                  L F ++          +G   + + + 
Sbjct: 63  ---PVSKLHFRVWSHQTLKSDVLLGTAALDIYET 93

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (154), Expect = 1e-14
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 11  SLSVTVIQAEDLPALDMGGTSDPYVKVYLL-----PDKKKKFETKVHRKTLNPVFNETFV 65
           +LS+TVI  + L           YV+V L      P ++ + +      ++NPV+ E   
Sbjct: 2   TLSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEP- 56

Query: 66  FKGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 125
           F           +L  A+ +      +  +G   + +  ++            ++     
Sbjct: 57  FVFEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSESNMPLTMP 112

Query: 126 QLL 128
            L 
Sbjct: 113 ALF 115

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 6e-14
 Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 8/110 (7%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVFNETFVFKGV 69
           L ++    E          S P+  V +       +       + T+ P +  TF     
Sbjct: 5   LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH-- 62

Query: 70  PYADAMNKTLVFAIFDFDRFSKHD-QIGEVKVALCQIDLAQTIEEWRELQ 118
                  + +   +         +  +G   +A          E W +LQ
Sbjct: 63  ---IYEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ 109

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (132), Expect = 2e-11
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 15/119 (12%)

Query: 12  LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPY 71
           L V V +A+   A +     + YV    L  +  K  T    +   P + + F+F+    
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVT---LKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56

Query: 72  ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS-VEGEGGQL 127
              +       +++         +G V + L  I  +  +   EW  L S       ++
Sbjct: 57  DLGL----TVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEI 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.96
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.96
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.95
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.94
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.94
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.94
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.94
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.94
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.94
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.93
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.93
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.9
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.9
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.87
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.87
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.84
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.83
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.83
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.69
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.66
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.87

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=5.9e-29  Score=146.68  Aligned_cols=119  Identities=70%  Similarity=1.136  Sum_probs=107.8

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |++.|++..+.|+|+|++|++|+.++..+.+|||+++.+.+.+....+|+++.++.+|.|+|.|.|. +...++....|.
T Consensus        25 ~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~-i~~~~l~~~~L~  103 (143)
T d1rsya_          25 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLV  103 (143)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-CCHHHHTTCEEE
T ss_pred             EEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEE-EEeeccCCceEE
Confidence            4789999999999999999999998888899999999998877778899999999999999999998 766555667899


Q ss_pred             EEEEEccCCCCCceeEEEEEecccccccccccceEecccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV  120 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~  120 (128)
                      |.|||++.++++++||.+.++|.++..+....+|++|+.+
T Consensus       104 i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~sa  143 (143)
T d1rsya_         104 MAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  143 (143)
T ss_dssp             EEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             EEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCCC
Confidence            9999999999999999999999999888888899999753

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.8e-28  Score=141.05  Aligned_cols=120  Identities=51%  Similarity=0.871  Sum_probs=103.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLV   80 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~   80 (128)
                      |+++|++..+.|.|+|.+|++|+..+..+.+|||+++.+.+++.++.+|+++.++.+|.|+|+|.|. +...++....|.
T Consensus         9 ~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~~~~~~L~   87 (130)
T d1dqva1           9 FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-VPLAELAQRKLH   87 (130)
T ss_dssp             EEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-CCGGGGSSCCCE
T ss_pred             EEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEE-EchHHcCCCeEE
Confidence            5799999999999999999999998888899999999997776678899999999999999999998 776666667899


Q ss_pred             EEEEEccCCCCCceeEEEEEeccc-cc-ccccccceEeccccc
Q psy12095         81 FAIFDFDRFSKHDQIGEVKVALCQ-ID-LAQTIEEWRELQSVE  121 (128)
Q Consensus        81 v~v~~~~~~~~~~~lG~~~~~l~~-l~-~~~~~~~w~~L~~~~  121 (128)
                      |+|||++.++++++||++.|++.. +. .......|++|.+.+
T Consensus        88 v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~G  130 (130)
T d1dqva1          88 FSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG  130 (130)
T ss_dssp             EEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS
T ss_pred             EEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccCC
Confidence            999999999999999999997543 32 233455799998753

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.4e-27  Score=136.57  Aligned_cols=120  Identities=23%  Similarity=0.371  Sum_probs=105.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC-CeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK-KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~-~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      |++.|++..+.|.|+|++|++|..   .+.+||||++.+.+... ...+|+++.++.+|.|+|.|.|. +...++....|
T Consensus        17 ~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~-v~~~~l~~~~L   92 (138)
T d1wfma_          17 YCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP-LAEEELPTATL   92 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE-CCTTSSTTCEE
T ss_pred             EEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEE-eeehhccceEE
Confidence            579999999999999999999954   35679999999976543 35779999999999999999999 87777777889


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEecccccCCC
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEG  124 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~~  124 (128)
                      .|+||+++.++++++||++.|+|.++..+...++|++|.+.....
T Consensus        93 ~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~~~  137 (138)
T d1wfma_          93 TLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSS  137 (138)
T ss_dssp             EEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSCCC
T ss_pred             EEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCCCCC
Confidence            999999999999999999999999998788889999999876544

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=132.62  Aligned_cols=117  Identities=34%  Similarity=0.595  Sum_probs=96.4

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCC--CeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~--~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      +++.|++..+.|.|+|.+|++|++.+..+.+|||+++.+.++..  ..++|++++.+.+|.|+|+|.|..+...++....
T Consensus         5 l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~   84 (125)
T d2bwqa1           5 IKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERM   84 (125)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCE
T ss_pred             EEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCE
Confidence            47999999999999999999999988888999999999976543  4678999999999999999999746666666678


Q ss_pred             EEEEEEEccCCC--CCceeEEEEEecccccccccccceEecc
Q psy12095         79 LVFAIFDFDRFS--KHDQIGEVKVALCQIDLAQTIEEWRELQ  118 (128)
Q Consensus        79 l~v~v~~~~~~~--~~~~lG~~~~~l~~l~~~~~~~~w~~L~  118 (128)
                      |.|+|||++.+.  ++++||++.++|.++.... ..+||+|+
T Consensus        85 L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          85 LEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             EEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             EEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            999999998753  4569999999999986544 46899985

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=5.3e-27  Score=138.09  Aligned_cols=120  Identities=37%  Similarity=0.663  Sum_probs=102.1

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC-----------eeecceeecCCCCeecceEEEccc
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFETKVHRKTLNPVFNETFVFKGV   69 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~-----------~~~t~~~~~~~~p~~~e~~~f~~~   69 (128)
                      |++.|+  .+.|.|+|++|++|+.++..+.+|||+++.+.+....           +.+|+++.++.+|.|+|.|.|..+
T Consensus        11 lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~   88 (142)
T d1rh8a_          11 LQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSI   88 (142)
T ss_dssp             EEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSC
T ss_pred             EEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeee
Confidence            467775  6899999999999999988899999999998654322           356888888999999999999845


Q ss_pred             CCCCCCCCeEEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         70 PYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        70 ~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      ...++....|.|.|||++.++++++||++.++|.++..+....+||+|.++..
T Consensus        89 ~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~~  141 (142)
T d1rh8a_          89 SMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             CHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred             cccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcCC
Confidence            54555567899999999999999999999999999988888889999998764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.2e-27  Score=136.50  Aligned_cols=119  Identities=33%  Similarity=0.599  Sum_probs=102.4

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      ++++|++..+.|.|+|.+|++|+..+..+.+|||+++.+.+++  ..+++|+++..+.+|.|+|.|.|. ++..++....
T Consensus         6 l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~   84 (137)
T d2cm5a1           6 VSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKS   84 (137)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCE
T ss_pred             EEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEE-eEHHHccccE
Confidence            5799999999999999999999988888899999999997654  346789999999999999999999 8777776788


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.|.+|+++..+++++||++.+++.++.  ....+|++|.+.+.
T Consensus        85 l~v~v~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~  126 (137)
T d2cm5a1          85 LDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKD  126 (137)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTT
T ss_pred             EEEEeeeCCCCCCCCEEEEEEeCccccC--cchhhhhhHhhCCC
Confidence            9999999999999999999999998753  34567888776543

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=6.4e-26  Score=132.81  Aligned_cols=116  Identities=36%  Similarity=0.575  Sum_probs=93.5

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+|+|++..+.|.|+|.+|++|++.+..+.+|||+++.+.+.+..  +.+|+++..+.+|.|+|+|.|. ++..++....
T Consensus         6 ~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~-v~~~~~~~~~   84 (138)
T d1w15a_           6 VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-IPCESLEEIS   84 (138)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-CCSSSSTTEE
T ss_pred             EEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEE-ecHHHhCccE
Confidence            589999999999999999999999888888999999999765543  5679999999999999999998 8777777778


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEeccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS  119 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~  119 (128)
                      |.|.|||++.++++++||++.+++....  ....+|++|..
T Consensus        85 l~i~v~d~~~~~~~~~iG~~~i~l~~~~--~~~~hW~~ll~  123 (138)
T d1w15a_          85 VEFLVLDSERGSRNEVIGRLVLGATAEG--SGGGHWKEICD  123 (138)
T ss_dssp             EEEEEEECCTTSCCEEEEEEEESTTCCS--HHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCCCEEEEEEEcchhCC--chHHHHHHHHh
Confidence            9999999999999999999999987642  23445666543

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=3.7e-26  Score=132.93  Aligned_cols=118  Identities=34%  Similarity=0.576  Sum_probs=99.7

Q ss_pred             eEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          2 KLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         2 ~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      .+.+....+.|.|+|.+|++|+.++..+.+||||++.+.+.+  ..+.+|+++..+.+|.|+|.|.|. +..... ...|
T Consensus         7 ~l~~~~~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~L   84 (132)
T d1a25a_           7 YIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-LKESDK-DRRL   84 (132)
T ss_dssp             EEEEEESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-CCSGGG-GCEE
T ss_pred             EEEEEecCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEE-eEcccc-CCEE
Confidence            456666789999999999999999888899999999997644  346789999999999999999998 654332 3479


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      .|.|||++.+++|++||.+.++|.++..+ ..++||+|.+.+.
T Consensus        85 ~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~  126 (132)
T d1a25a_          85 SVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEE  126 (132)
T ss_dssp             EEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHH
T ss_pred             eEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCC
Confidence            99999999999999999999999998654 4689999988654

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-25  Score=131.56  Aligned_cols=121  Identities=45%  Similarity=0.784  Sum_probs=101.5

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCC-CCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeE
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTL   79 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~-~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l   79 (128)
                      |+|.|++..+.|.|+|++|++|+..+..+ .+|||+++.+.+......+|+++..+.+|.|+|+|.|..++..++....|
T Consensus        13 ~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L   92 (138)
T d1ugka_          13 FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELAL   92 (138)
T ss_dssp             EEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEE
T ss_pred             EEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceE
Confidence            58999999999999999999999876554 47999999998877778899999999999999999996466666666789


Q ss_pred             EEEEEEccCCCCCceeEEEEEecccccccc-cccceEeccccc
Q psy12095         80 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQSVE  121 (128)
Q Consensus        80 ~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~-~~~~w~~L~~~~  121 (128)
                      .|+|||++.++++++||.+.++|.++...+ ....|..+...+
T Consensus        93 ~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~p  135 (138)
T d1ugka_          93 HFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             EEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             EEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccCCC
Confidence            999999999999999999999999985443 344566654433

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.8e-25  Score=133.50  Aligned_cols=120  Identities=37%  Similarity=0.692  Sum_probs=102.2

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+|+|.+..++|.|+|.+|++|+..+..+.+||||++.+.+.+..  ..+|++.+++.+|.|+|+|.|. ++..++....
T Consensus        16 ~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~-v~~~~l~~~~   94 (157)
T d1uowa_          16 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQ   94 (157)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCE
T ss_pred             EEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEE-ecHHHcCccE
Confidence            579999999999999999999998888889999999999766543  4579999999999999999998 8777766678


Q ss_pred             EEEEEEEccCCCCCceeEEEEEeccccc------------ccccccceEeccccc
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQID------------LAQTIEEWRELQSVE  121 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~------------~~~~~~~w~~L~~~~  121 (128)
                      |.|.||+++.++++++||++.|++....            ......+|+.|.+..
T Consensus        95 l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~~  149 (157)
T d1uowa_          95 VVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (157)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             EEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCCc
Confidence            9999999999999999999999987632            123446799887654

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.2e-26  Score=137.00  Aligned_cols=120  Identities=35%  Similarity=0.563  Sum_probs=102.7

Q ss_pred             CeEEEecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCC--eeecceeecCCCCeecceEEEcccCCCCCCCCe
Q psy12095          1 MKLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKGVPYADAMNKT   78 (128)
Q Consensus         1 ~~~~y~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~--~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~   78 (128)
                      |+|+|.+..+.|.|+|.+|++|+..+..+.+|||+++.+.+.+..  +.+|+++..+.+|.|+|.|.|. ++..++....
T Consensus        11 ~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~-v~~~~~~~~~   89 (145)
T d1dqva2          11 FSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VAPESVENVG   89 (145)
T ss_dssp             EEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-CCSGGGGSCC
T ss_pred             EEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEE-EehhhcCCCE
Confidence            589999999999999999999998888888999999998765443  5789999999999999999998 7776666778


Q ss_pred             EEEEEEEccCCCCCceeEEEEEecccccccccccceEecccccC
Q psy12095         79 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG  122 (128)
Q Consensus        79 l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~  122 (128)
                      |.|.+|+++..+++++||++.|+++.+. .....+|++|...++
T Consensus        90 l~v~v~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~l~~~p~  132 (145)
T d1dqva2          90 LSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEMLANPR  132 (145)
T ss_dssp             CCCEEEECCSSSCCEEEEECCCSSCTTC-HHHHHHHHTSSSSSS
T ss_pred             EEEEEEecCCCCCCcEEEEEEECchHcC-chhhHHHHHHHhCCC
Confidence            9999999999999999999999998763 334567888766544

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-24  Score=123.23  Aligned_cols=111  Identities=21%  Similarity=0.360  Sum_probs=93.0

Q ss_pred             CCEEEEEEEEecCCCCCC---CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEE
Q psy12095          9 ANSLSVTVIQAEDLPALD---MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFD   85 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~---~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~   85 (128)
                      .++|+|+|++|++|+...   ..+.+|||+++.+.+...++.+|+++.++.+|.|+|+|.|. +..  .....|.|.|||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~-i~~--~~~~~L~v~V~d   78 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDP--NQENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-ECT--TSCCEEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeec-ccC--cccCcEEEEEEE
Confidence            578999999999998643   24688999999986655667889999999999999999998 543  234679999999


Q ss_pred             ccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         86 FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        86 ~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      ++.. +|++||++.++|.++..+.....||+|.+.++.
T Consensus        79 ~d~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g  115 (126)
T d1rlwa_          79 ANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM  115 (126)
T ss_dssp             CCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEE
T ss_pred             CCCC-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeE
Confidence            9875 578999999999999888888899999876543

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=120.73  Aligned_cols=105  Identities=30%  Similarity=0.462  Sum_probs=90.3

Q ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEcc
Q psy12095          8 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFD   87 (128)
Q Consensus         8 ~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~   87 (128)
                      +-|.|+|+|.+|++|+.++..+.+||||++.+   +..+++|+++.++.+|.|+|.|.|. +...   ...|.|+|||++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~---~~~~~~T~~~~~t~nP~wne~f~f~-v~~~---~~~L~i~V~d~~   76 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLEL---GNDRLQTHTVYKNLNPEWNKVFTFP-IKDI---HDVLEVTVFDED   76 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE---TTEEEECCCCSSCSSCCCCEEEEEE-ESCT---TCEEEEEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEc---CCeEEEEEeeCCceeEEEEEEEEEE-Eecc---CceeEEEEEEcc
Confidence            45789999999999999988899999999998   4567889999999999999999998 6532   257999999999


Q ss_pred             CCCCCceeEEEEEecccccccccccceEeccccc
Q psy12095         88 RFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE  121 (128)
Q Consensus        88 ~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~  121 (128)
                      .++++++||++.++|.++..+.  .+|+.|....
T Consensus        77 ~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~  108 (126)
T d2ep6a1          77 GDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD  108 (126)
T ss_dssp             TTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC
T ss_pred             CCcCcceEEEEEEEHHHCCCCC--ceEEEccccC
Confidence            9999999999999999986654  4788886554

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=6.4e-23  Score=119.60  Aligned_cols=113  Identities=25%  Similarity=0.336  Sum_probs=91.1

Q ss_pred             ecCCCEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceee-cCCCCeecceEEEcccCCCCCCCCeEEEEEE
Q psy12095          6 DFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKGVPYADAMNKTLVFAIF   84 (128)
Q Consensus         6 ~~~~~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~-~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~   84 (128)
                      ..+.|.|+|+|++|++|+..+..+.+||||++.+   +....+|+++. .+.+|.|+|+|.|. +...   ...|.|+||
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~---~~~~~~t~~~~~~~~nP~Wne~f~f~-v~~~---~~~L~v~V~   78 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC---RTQDQKSNVAEGMGTTPEWNETFIFT-VSEG---TTELKAKIF   78 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEES---SSCEEECCCCTTCCSSCEEEEEEEEE-EESS---CCEEEEEEC
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEE---eeeeEEEEEEecCCCcEEEeeEEEEE-EcCc---cceEEEEEE
Confidence            3456899999999999999988899999999998   34566788776 58899999999998 6532   256999999


Q ss_pred             EccCCCCCceeEEEEEecccccc-cccccceEecccccCCCC
Q psy12095         85 DFDRFSKHDQIGEVKVALCQIDL-AQTIEEWRELQSVEGEGG  125 (128)
Q Consensus        85 ~~~~~~~~~~lG~~~~~l~~l~~-~~~~~~w~~L~~~~~~~~  125 (128)
                      |++.+++|++||++.++|.++.. +.....|+.|....+..|
T Consensus        79 d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G  120 (136)
T d1wfja_          79 DKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKG  120 (136)
T ss_dssp             CSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEE
T ss_pred             EecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCE
Confidence            99999999999999999998743 344467998865544333

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.87  E-value=5.9e-22  Score=115.44  Aligned_cols=106  Identities=19%  Similarity=0.327  Sum_probs=86.9

Q ss_pred             CCEEEEEEEEecCCCCCC-----------CCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCC
Q psy12095          9 ANSLSVTVIQAEDLPALD-----------MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNK   77 (128)
Q Consensus         9 ~~~l~v~i~~a~~l~~~~-----------~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~   77 (128)
                      .|.|+|+|.+|++|++.+           ..+.+||||.+.+  +.....+|++...+.+|.|+|.|.|. +..    ..
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l--~~~~~~~T~~~~~t~~P~Wne~f~f~-v~~----~~   77 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPAWHDEFVTD-VCN----GR   77 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEE-EEE----EC
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe--CCCcCcEeeEEcCCCCccCccEEEEE-Eec----CC
Confidence            478999999999998742           3456899999999  23345678888899999999999998 652    25


Q ss_pred             eEEEEEEEccCCCCCceeEEEEEecccccccc--cccceEeccccc
Q psy12095         78 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQSVE  121 (128)
Q Consensus        78 ~l~v~v~~~~~~~~~~~lG~~~~~l~~l~~~~--~~~~w~~L~~~~  121 (128)
                      .|.|+|||++.+++|++||.+.++|+++....  ..+.|++|.+.+
T Consensus        78 ~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p~G  123 (136)
T d1gmia_          78 KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEG  123 (136)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSSC
T ss_pred             ceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCCCc
Confidence            79999999999999999999999999985543  356899998754

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=4.6e-20  Score=106.69  Aligned_cols=108  Identities=26%  Similarity=0.376  Sum_probs=83.5

Q ss_pred             CEEEEEEEEecCCCCC--CCCCCCCCeEEEEEeCC--CCCeeecceeec-CCCCeecceEEEcccCCCCCCCCeEEEEEE
Q psy12095         10 NSLSVTVIQAEDLPAL--DMGGTSDPYVKVYLLPD--KKKKFETKVHRK-TLNPVFNETFVFKGVPYADAMNKTLVFAIF   84 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~--~~~~~~~p~~~~~~~~~--~~~~~~t~~~~~-~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~   84 (128)
                      ..|+|+|++|++|+..  +..+.+|||+++.+.+.  +..+.+|++++. +.+|.|+|+|.|. +...+  ...|.++||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~-~~~~~--~~~L~~~V~   80 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPD--LALVRFMVE   80 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEE-ESCGG--GCEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEE-EEcch--hceEEEEEE
Confidence            4799999999999753  45677899999998643  345678888764 4799999999997 54433  256999999


Q ss_pred             EccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         85 DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        85 ~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      |++..++|++||++.++|..+..|.   .|++|.+..+.
T Consensus        81 D~d~~~~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~  116 (131)
T d1qasa2          81 DYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGD  116 (131)
T ss_dssp             ECCTTTCCEEEEEEEEEGGGBCCEE---EEEEEECTTSC
T ss_pred             EecCCCCCcEEEEEEEEEeccCCCC---EEEECCCCCcC
Confidence            9999999999999999999996653   58888765543

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.8e-20  Score=106.36  Aligned_cols=100  Identities=22%  Similarity=0.293  Sum_probs=80.0

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      +.|.|+|.+|++|.+.+   ..||||.+.+   +..+.+|.+.+ +.+|.|+|.|.|. +...   ...|.|+|||++..
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~---~~~k~~T~~~k-~~nP~Wne~f~f~-v~~~---~~~L~v~V~d~~~~   70 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKV---QNVKSTTIAVR-GSQPSWEQDFMFE-INRL---DLGLTVEVWNKGLI   70 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEE---TTEEEECCCEE-SSSCEEEEEEEEE-ECCC---SSEEEEEEEECCSS
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEe---CCEEEEEEEec-CCCCeEEEEEEEe-eccc---cceEEEEEEeCCCc
Confidence            46899999999999876   5799999999   44577788776 4589999999999 5432   35799999999876


Q ss_pred             CCCceeEEEEEeccccccc--ccccceEeccccc
Q psy12095         90 SKHDQIGEVKVALCQIDLA--QTIEEWRELQSVE  121 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~~~--~~~~~w~~L~~~~  121 (128)
                       .|++||.+.|+|+++...  ....+|+.|..+.
T Consensus        71 -~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~  103 (128)
T d2cjta1          71 -WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA  103 (128)
T ss_dssp             -CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC--
T ss_pred             -CCcceEEEEEEehhhccCCCCCCCeeEECCccc
Confidence             588999999999998543  3456899997653

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.6e-20  Score=107.38  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=77.5

Q ss_pred             CEEEEEEEEecCCCCCCCCCCCCCeEEEEEeCCCCCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         10 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        10 ~~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      ++|.|+|++|+++...+..+.+|||+.+.+   +.+..+|++..++.+|.|+|.|.|. +..    ...|.|+|||++.+
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~---~~~~~kT~v~~~t~nP~wne~f~f~-~~~----~~~l~~~V~d~d~~   77 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTV---DGQSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSHQTL   77 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEE---TTEEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEECCSS
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEE---CCeEEeeEEEEecccEEEcceEEEE-EEe----cceeEEEEEEccCC
Confidence            679999999999998887888999999998   4567889999999999999999998 653    25799999999999


Q ss_pred             CCCceeEEEEEeccccc
Q psy12095         90 SKHDQIGEVKVALCQID  106 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~  106 (128)
                      ++|++||.+.++|.++.
T Consensus        78 ~~d~~iG~~~i~L~~l~   94 (133)
T d2nq3a1          78 KSDVLLGTAALDIYETL   94 (133)
T ss_dssp             SCCEEEEEEEEEHHHHH
T ss_pred             CCCceEEEEEEEHHHhh
Confidence            99999999999998873

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-16  Score=89.43  Aligned_cols=100  Identities=26%  Similarity=0.428  Sum_probs=72.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCCeEEEEEeC---CCCCeeecce--eecCCCCeecce-EEEcccCCCCCCCCeEEEEEE
Q psy12095         11 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLP---DKKKKFETKV--HRKTLNPVFNET-FVFKGVPYADAMNKTLVFAIF   84 (128)
Q Consensus        11 ~l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~---~~~~~~~t~~--~~~~~~p~~~e~-~~f~~~~~~~~~~~~l~v~v~   84 (128)
                      .|+|+|++|++|+..    ..|||+++.+.+   +..++.+|++  ..++.+|.|||. |.|..+...+  -..|.+.||
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~--l~~L~f~V~   75 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE--LASLRVAVM   75 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG--GCEEEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCc--ccEEEEEEE
Confidence            589999999999755    579999999853   2233344444  357889999965 4443233333  257999999


Q ss_pred             EccCCCCCceeEEEEEecccccccccccceEecccccCC
Q psy12095         85 DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE  123 (128)
Q Consensus        85 ~~~~~~~~~~lG~~~~~l~~l~~~~~~~~w~~L~~~~~~  123 (128)
                      |++    ++++|++.++|+.+..|.   +|++|.+..++
T Consensus        76 D~d----~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~  107 (122)
T d2zkmx2          76 EEG----NKFLGHRIIPINALNSGY---HHLCLHSESNM  107 (122)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCEE---EEEEEECTTCC
T ss_pred             CCC----CCEEEEEEEEcccCcCCc---eEEEccCCCcC
Confidence            975    789999999999997775   56677665443

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=7.4e-16  Score=87.74  Aligned_cols=101  Identities=17%  Similarity=0.221  Sum_probs=72.3

Q ss_pred             EEEEEEEecCCCCCCCCCCCCCeEEEEEeCCC--CCeeecceeecCCCCeecceEEEcccCCCCCCCCeEEEEEEEccCC
Q psy12095         12 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKGVPYADAMNKTLVFAIFDFDRF   89 (128)
Q Consensus        12 l~v~i~~a~~l~~~~~~~~~~p~~~~~~~~~~--~~~~~t~~~~~~~~p~~~e~~~f~~~~~~~~~~~~l~v~v~~~~~~   89 (128)
                      ++|.|....--+.....+.+||||.+.+.+..  .+..+|++.+.+.+|.|||+|.|. +..    ...+.|.||+++  
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~-v~~----~~~l~i~V~d~d--   77 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAA--   77 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEET--
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEE-Ecc----ccEEEEEEEEcc--
Confidence            44554433222223346788999999996432  234567788899999999999998 542    357999999975  


Q ss_pred             CCCceeEEEEEeccccc-----ccccccceEeccccc
Q psy12095         90 SKHDQIGEVKVALCQID-----LAQTIEEWRELQSVE  121 (128)
Q Consensus        90 ~~~~~lG~~~~~l~~l~-----~~~~~~~w~~L~~~~  121 (128)
                        ++++|.+.+.+..+.     .+...+.|++|.+.+
T Consensus        78 --d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~~G  112 (123)
T d1bdya_          78 --EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQA  112 (123)
T ss_dssp             --TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSSC
T ss_pred             --ccccCccEEehhheeeccccCCCcccEEEeCCCCE
Confidence              789999999988773     344566899997654